RGS17
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Also known as RGSZ2RGS-17
Summary
RGS17 (regulator of G protein signaling 17, HGNC:14088) is a protein-coding gene on chromosome 6q25.2, encoding Regulator of G-protein signaling 17 (Q9UGC6). Regulates G protein-coupled receptor signaling cascades, including signaling via muscarinic acetylcholine receptor CHRM2 and dopamine receptor DRD2.
This gene encodes a member of the regulator of G-protein signaling family. This protein contains a conserved, 120 amino acid motif called the RGS domain and a cysteine-rich region. The protein attenuates the signaling activity of G-proteins by binding to activated, GTP-bound G alpha subunits and acting as a GTPase activating protein (GAP), increasing the rate of conversion of the GTP to GDP. This hydrolysis allows the G alpha subunits to bind G beta/gamma subunit heterodimers, forming inactive G-protein heterotrimers, thereby terminating the signal.
Source: NCBI Gene 26575 — RefSeq curated summary.
At a glance
- GWAS associations: 19
- Clinical variants (ClinVar): 20 total
- Druggable target: yes — 2 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_012419
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:14088 |
| Approved symbol | RGS17 |
| Name | regulator of G protein signaling 17 |
| Location | 6q25.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | RGSZ2, RGS-17 |
| Ensembl gene | ENSG00000091844 |
| Ensembl biotype | protein_coding |
| OMIM | 607191 |
| Entrez | 26575 |
Gene structure
Transcript identifiers
Ensembl transcripts: 3 — 3 protein_coding
ENST00000206262, ENST00000367225, ENST00000914255
RefSeq mRNA: 1 — MANE Select: NM_012419
NM_012419
CCDS: CCDS5244
Canonical transcript exons
ENST00000206262 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001240271 | 153131124 | 153131282 |
| ENSE00003890589 | 153024262 | 153024496 |
| ENSE00003891788 | 153004459 | 153011762 |
| ENSE00003894299 | 153043900 | 153044043 |
| ENSE00003895490 | 153026454 | 153026543 |
Expression profiles
Bgee: expression breadth ubiquitous, 227 present calls, max score 86.43.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 4.7485 / max 101.8326, expressed in 1130 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 76275 | 4.7485 | 1130 |
Top tissues by expression
260 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| cortical plate | UBERON:0005343 | 86.43 | gold quality |
| buccal mucosa cell | CL:0002336 | 84.72 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 83.69 | gold quality |
| cartilage tissue | UBERON:0002418 | 82.00 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 78.24 | gold quality |
| islet of Langerhans | UBERON:0000006 | 77.61 | gold quality |
| ganglionic eminence | UBERON:0004023 | 76.19 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 75.24 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 75.14 | silver quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 74.54 | gold quality |
| pancreatic ductal cell | CL:0002079 | 74.54 | silver quality |
| amniotic fluid | UBERON:0000173 | 74.20 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 73.72 | gold quality |
| cerebellar vermis | UBERON:0004720 | 73.58 | gold quality |
| entorhinal cortex | UBERON:0002728 | 72.80 | gold quality |
| ventricular zone | UBERON:0003053 | 72.69 | gold quality |
| cerebellum | UBERON:0002037 | 72.54 | gold quality |
| cerebellar cortex | UBERON:0002129 | 72.35 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 72.22 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 71.93 | gold quality |
| sperm | CL:0000019 | 71.20 | silver quality |
| right hemisphere of cerebellum | UBERON:0014890 | 71.16 | gold quality |
| postcentral gyrus | UBERON:0002581 | 71.12 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 70.42 | gold quality |
| parietal lobe | UBERON:0001872 | 70.07 | gold quality |
| embryo | UBERON:0000922 | 70.02 | gold quality |
| primary visual cortex | UBERON:0002436 | 69.90 | gold quality |
| male germ cell | CL:0000015 | 69.54 | silver quality |
| prefrontal cortex | UBERON:0000451 | 69.30 | gold quality |
| tendon | UBERON:0000043 | 68.45 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 5.05 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
78 targeting RGS17, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3925-3P | 100.00 | 69.95 | 1237 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-32-5P | 99.98 | 75.21 | 1964 |
| HSA-MIR-92A-3P | 99.98 | 75.21 | 1960 |
| HSA-MIR-92B-3P | 99.98 | 75.25 | 1955 |
| HSA-MIR-25-3P | 99.98 | 74.60 | 1817 |
| HSA-MIR-363-3P | 99.98 | 74.72 | 1821 |
| HSA-MIR-367-3P | 99.98 | 74.83 | 1819 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-MIR-34C-5P | 99.97 | 70.45 | 1577 |
| HSA-MIR-449B-5P | 99.97 | 70.26 | 1580 |
| HSA-MIR-6888-3P | 99.97 | 65.95 | 1170 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-96-5P | 99.95 | 72.80 | 2140 |
| HSA-MIR-9983-3P | 99.94 | 71.48 | 3631 |
| HSA-MIR-144-3P | 99.94 | 73.98 | 2698 |
| HSA-MIR-6845-3P | 99.94 | 66.88 | 1439 |
| HSA-MIR-4760-3P | 99.93 | 70.50 | 2385 |
| HSA-MIR-12133 | 99.92 | 71.82 | 2006 |
| HSA-MIR-515-5P | 99.92 | 69.82 | 2343 |
| HSA-MIR-519E-5P | 99.92 | 69.62 | 2358 |
| HSA-MIR-1271-5P | 99.91 | 71.99 | 1972 |
| HSA-MIR-3529-3P | 99.90 | 73.55 | 3045 |
| HSA-MIR-129-5P | 99.88 | 70.26 | 3273 |
Literature-anchored findings (GeneRIF, showing 16)
- RGS17 is a new RZ member that preferentially inhibits receptor signaling via G(i/o), G(z), and G(q) over G(s) to enhance cAMP-dependent signaling and inhibit calcium signaling (PMID:15096504)
- RGS17, an overexpressed gene in human lung and prostate cancer, induces tumor cell proliferation through the cyclic AMP-PKA-CREB pathway. (PMID:19244110)
- RGS17 is a major candidate for the familial lung cancer susceptibility locus on chromosome 6q23-25. (PMID:19351763)
- Taken together, these data have provided the first evidence of miRNA regulation of RGS17 expression in lung cancer. (PMID:20420807)
- Results establish RGS10 and RGS17 as novel regulators of cell survival and chemoresistance in ovarian cancer cells and suggest that their reduced expression may be diagnostic of chemoresistance. (PMID:21044322)
- RGS17 is differentially expressed in hepatocellular carcinoma cells and plays a central role in regulating transformed hepatocyte tumorgenicity. (PMID:21620966)
- Two single nucleotide polymorphisms in the regulator of G-protein signaling 17 gene are associated with smoking initiation. (PMID:22006218)
- Variation in RGS17 was associated with risk for substance dependence diagnoses in both African American and European American populations. (PMID:22591552)
- data suggest that RGS17 is overexpressed in colorectal carcinoma and promotes cell proliferation, migration, and invasion (PMID:28337960)
- Taken together, the results suggested that expression of miR-203 inhibited non-small-cell lung cancer tumor growth and metastasis by targeting RGS17 (PMID:28921827)
- A screen of over 60,000 small molecules led to the identification of five hit compounds that inhibit the RGS17-Galphao protein-protein interaction. (PMID:29351497)
- Results showed that RGS17 overexpression promoted hepatocarcinoma (HCC) cell proliferation, migration, and invasion, and reversed the miR-199 mediated inhibition of proliferation, migration, and invasion. (PMID:29559347)
- these findings suggest that Ca(2+) positively regulates RGS17, which may represent a general mechanism by which increased Ca(2+) concentration promotes the GAP activity of the RZ subfamily, leading to RZ-mediated inhibition of Ca(2+) signaling. (PMID:30940727)
- Knock-down of Long non-coding RNA Linc00483 inhibited the development of cervical cancer by regulating miR-508-3p/RGS17 axis. (PMID:31454494)
- MiR-203 inhibits cell proliferation, invasion, and migration of ovarian cancer through regulating RGS17. (PMID:34002599)
- Hsa_circ_0000285-Mediated miR-599/RGS17 Axis Participates in the Pathogenesis of Abdominal Aortic Aneurysm by Regulating the Functions of Vascular Smooth Muscle Cells. (PMID:37094862)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | rgs17 | ENSDARG00000039435 |
| mus_musculus | Rgs17 | ENSMUSG00000019775 |
| rattus_norvegicus | Rgs17 | ENSRNOG00000018690 |
| drosophila_melanogaster | Dhit | FBGN0028743 |
Paralogs (23): RGS11 (ENSG00000076344), RGS1 (ENSG00000090104), AXIN1 (ENSG00000103126), RGS9 (ENSG00000108370), RGS2 (ENSG00000116741), RGS4 (ENSG00000117152), RGSL1 (ENSG00000121446), RGS13 (ENSG00000127074), RGS22 (ENSG00000132554), RGS8 (ENSG00000135824), RGS3 (ENSG00000138835), RGS5 (ENSG00000143248), RGS16 (ENSG00000143333), RGS20 (ENSG00000147509), RGS10 (ENSG00000148908), RGS18 (ENSG00000150681), RGS12 (ENSG00000159788), AXIN2 (ENSG00000168646), RGS14 (ENSG00000169220), RGS19 (ENSG00000171700), RGS6 (ENSG00000182732), RGS7 (ENSG00000182901), RGS21 (ENSG00000253148)
Protein
Protein identifiers
Regulator of G-protein signaling 17 — Q9UGC6 (reviewed: Q9UGC6)
All UniProt accessions (1): Q9UGC6
UniProt curated annotations — full annotation on UniProt →
Function. Regulates G protein-coupled receptor signaling cascades, including signaling via muscarinic acetylcholine receptor CHRM2 and dopamine receptor DRD2. Inhibits signal transduction by increasing the GTPase activity of G protein alpha subunits, thereby driving them into their inactive GDP-bound form. Binds selectively to GNAZ and GNAI2 subunits, accelerates their GTPase activity and regulates their signaling activities. Negatively regulates mu-opioid receptor-mediated activation of the G-proteins.
Subunit / interactions. Interacts with GNAI1 and GNAQ. Interacts with GNAZ and GNAI2. Interacts with OPRM1. Forms a complex with mu-opioid receptors and G(alpha)z/i2 subunits, including GNAZ and GNAI2; the formation of this complex results in mu-opioid receptor desensitization. Interacts with HINT1.
Subcellular location. Membrane. Synapse. Synaptosome. Nucleus. Cytoplasm.
Tissue specificity. Predominantly expressed in the cerebellum. Also expressed in the cortex and medulla. Weakly expressed in a number of peripheral tissues notably spleen, lung and leukocytes.
Post-translational modifications. N- and O-glycosylated in synapsomal membranes. Serine phosphorylated in synapsomal membranes. Sumoylated with SUMO1 and SUM02 in synaptosomes. The sumoylated forms act as a scaffold for sequestering mu-opioid receptor-activated G(alpha) subunits. Desumoylated by HINT1.
RefSeq proteins (1): NP_036551* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR016137 | RGS | Domain |
| IPR036305 | RGS_sf | Homologous_superfamily |
| IPR044926 | RGS_subdomain_2 | Homologous_superfamily |
Pfam: PF00615
UniProt features (15 total): helix 10, chain 1, domain 1, turn 1, region of interest 1, modified residue 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6AM3 | X-RAY DIFFRACTION | 1.53 |
| 1ZV4 | X-RAY DIFFRACTION | 2.4 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9UGC6-F1 | 79.82 | 0.64 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 137
Function
Pathways and Gene Ontology
Reactome pathways
3 pathways
| ID | Pathway |
|---|---|
| R-HSA-416476 | G alpha (q) signalling events |
| R-HSA-418594 | G alpha (i) signalling events |
| R-HSA-418597 | G alpha (z) signalling events |
MSigDB gene sets: 150 (showing top):
GSE37336_LY6C_POS_VS_NEG_NAIVE_CD4_TCELL_UP, RNGTGGGC_UNKNOWN, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, YAGI_AML_WITH_INV_16_TRANSLOCATION, GOBP_RESPONSE_TO_AMINE, REACTOME_G_ALPHA_Z_SIGNALLING_EVENTS, AAAYRNCTG_UNKNOWN, chr6q25, GOBP_RESPONSE_TO_AMPHETAMINE, DELYS_THYROID_CANCER_DN, ONDER_CDH1_TARGETS_2_UP, YAMASHITA_METHYLATED_IN_PROSTATE_CANCER, GOCC_NEURON_PROJECTION, GRYDER_PAX3FOXO1_ENHANCERS_IN_TADS, CUI_TCF21_TARGETS_2_UP
GO Biological Process (3): response to amphetamine (GO:0001975), G protein-coupled receptor signaling pathway (GO:0007186), negative regulation of signal transduction (GO:0009968)
GO Molecular Function (3): GTPase activity (GO:0003924), GTPase activator activity (GO:0005096), protein binding (GO:0005515)
GO Cellular Component (6): nucleus (GO:0005634), cytoplasm (GO:0005737), plasma membrane (GO:0005886), neuron projection (GO:0043005), synapse (GO:0045202), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| GPCR downstream signalling | 3 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| signal transduction | 2 |
| cellular anatomical structure | 2 |
| response to amine | 1 |
| G protein-coupled receptor activity | 1 |
| regulation of signal transduction | 1 |
| negative regulation of cell communication | 1 |
| negative regulation of signaling | 1 |
| negative regulation of response to stimulus | 1 |
| ribonucleoside triphosphate phosphatase activity | 1 |
| GTPase activity | 1 |
| enzyme activator activity | 1 |
| GTPase regulator activity | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| membrane | 1 |
| cell periphery | 1 |
| plasma membrane bounded cell projection | 1 |
| cell junction | 1 |
Protein interactions and networks
STRING
1296 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RGS17 | GNB5 | O14775 | 878 |
| RGS17 | SUCLG2 | Q96I99 | 853 |
| RGS17 | GNAQ | P50148 | 789 |
| RGS17 | ARHGEF1 | Q92888 | 788 |
| RGS17 | ARHGEF11 | O15085 | 785 |
| RGS17 | RGSL1 | A5PLK6 | 776 |
| RGS17 | GRK2 | P25098 | 770 |
| RGS17 | RGS7BP | Q6MZT1 | 725 |
| RGS17 | MCF2 | P10911 | 707 |
| RGS17 | GNA13 | Q14344 | 707 |
| RGS17 | SUCLG1 | P53597 | 695 |
| RGS17 | PLEK | P08567 | 689 |
| RGS17 | AKAP10 | O43572 | 671 |
| RGS17 | PLEK2 | Q9NYT0 | 668 |
| RGS17 | ARHGEF25 | Q86VW2 | 664 |
IntAct
156 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| RGS17 | AQP1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| OTX1 | RGS17 | psi-mi:“MI:0915”(physical association) | 0.720 |
| RGS17 | HOXA1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| RPL10A | RGS17 | psi-mi:“MI:0915”(physical association) | 0.720 |
| AQP1 | RGS17 | psi-mi:“MI:0915”(physical association) | 0.720 |
| RGS17 | OTX1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| RGS17 | RPL10A | psi-mi:“MI:0915”(physical association) | 0.720 |
| HOXA1 | RGS17 | psi-mi:“MI:0915”(physical association) | 0.720 |
| NUFIP2 | RGS17 | psi-mi:“MI:0915”(physical association) | 0.560 |
| RGS17 | GNAI3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SMCP | RGS17 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GNAI1 | RGS17 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PTGER3 | RGS17 | psi-mi:“MI:0915”(physical association) | 0.560 |
| RGS17 | LCE3C | psi-mi:“MI:0915”(physical association) | 0.560 |
| RGS17 | LCE4A | psi-mi:“MI:0915”(physical association) | 0.560 |
| RGS17 | LCE2A | psi-mi:“MI:0915”(physical association) | 0.560 |
| RGS17 | psi-mi:“MI:0915”(physical association) | 0.560 | |
| RGS17 | psi-mi:“MI:0915”(physical association) | 0.560 | |
| RGS17 | NUFIP2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| RGS17 | GNAI1 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (52): RGS17 (Two-hybrid), RGS17 (Two-hybrid), RGS17 (Two-hybrid), RGS17 (Two-hybrid), RGS17 (Two-hybrid), RGS17 (Two-hybrid), RGS17 (Two-hybrid), RGS17 (Two-hybrid), NUFIP2 (Two-hybrid), DHX37 (Two-hybrid), TBC1D16 (Two-hybrid), LCE4A (Two-hybrid), LCE2A (Two-hybrid), LCE3C (Two-hybrid), RGS17 (Two-hybrid)
ESM2 similar proteins: A1A643, O08849, O08850, O14921, O15539, O35119, O43665, O46470, O54829, P34295, P41220, P49758, P49800, P49802, P49803, P49806, P49808, P49809, P79100, P97844, Q08116, Q09777, Q0P5H5, Q10955, Q2KHW7, Q2M5E4, Q3S853, Q3T0T8, Q4L0E8, Q5M8L6, Q62240, Q6DGI0, Q6RG78, Q864Z2, Q8K443, Q8VYB9, Q99PG4, Q9CQE5, Q9FLY5, Q9JHX0
Diamond homologs: A1A643, F1S668, O08773, O08774, O08849, O08850, O08899, O14921, O14924, O15169, O15492, O15539, O35625, O42400, O43566, O43665, O46469, O46470, O46471, O54828, O54829, O70239, O70240, O70521, O75916, O76081, O88566, O94810, P34295, P41220, P49758, P49795, P49796, P49797, P49798, P49799, P49800, P49802, P49803, P49804
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 47 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Formation of the cornified envelope | 14 | 36.2× | 2e-17 |
| Keratinization | 18 | 29.5× | 4e-21 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| keratinization | 14 | 88.6× | 2e-22 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
20 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 18 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1015 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 6:153024307:AG:A | donor_gain | 0.9900 |
| 6:153026447:CA:C | donor_gain | 0.9900 |
| 6:153026448:ACTC:A | donor_loss | 0.9900 |
| 6:153026449:C:CG | donor_loss | 0.9900 |
| 6:153026450:TCAC:T | donor_loss | 0.9900 |
| 6:153026452:A:AC | donor_gain | 0.9900 |
| 6:153026453:C:A | donor_loss | 0.9900 |
| 6:153026453:C:CC | donor_gain | 0.9900 |
| 6:153026453:CCATT:C | donor_gain | 0.9900 |
| 6:153026478:T:A | donor_gain | 0.9900 |
| 6:153026539:TGAGG:T | acceptor_gain | 0.9900 |
| 6:153026540:GAGG:G | acceptor_gain | 0.9900 |
| 6:153026541:AGGCT:A | acceptor_loss | 0.9900 |
| 6:153026542:GG:G | acceptor_gain | 0.9900 |
| 6:153026542:GGCTG:G | acceptor_loss | 0.9900 |
| 6:153026544:C:CC | acceptor_gain | 0.9900 |
| 6:153026544:C:G | acceptor_loss | 0.9900 |
| 6:153026545:T:A | acceptor_loss | 0.9900 |
| 6:153026549:A:AC | acceptor_gain | 0.9900 |
| 6:153011675:T:C | donor_gain | 0.9800 |
| 6:153024261:CCT:C | donor_gain | 0.9800 |
| 6:153024494:TGG:T | acceptor_gain | 0.9800 |
| 6:153024497:C:CC | acceptor_gain | 0.9800 |
| 6:153025863:T:TG | acceptor_gain | 0.9800 |
| 6:153026446:ACAC:A | donor_loss | 0.9800 |
| 6:153026541:AGG:A | acceptor_gain | 0.9800 |
| 6:153026549:A:C | acceptor_gain | 0.9800 |
| 6:153024303:T:TA | donor_gain | 0.9700 |
| 6:153024492:TTTGG:T | acceptor_gain | 0.9700 |
| 6:153024493:TTGG:T | acceptor_gain | 0.9700 |
AlphaMissense
1401 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 6:153011637:A:C | F190L | 1.000 |
| 6:153011637:A:T | F190L | 1.000 |
| 6:153011638:A:G | F190S | 1.000 |
| 6:153011639:A:G | F190L | 1.000 |
| 6:153011640:C:A | R189S | 1.000 |
| 6:153011640:C:G | R189S | 1.000 |
| 6:153011641:C:A | R189M | 1.000 |
| 6:153011641:C:G | R189T | 1.000 |
| 6:153011642:T:A | R189W | 1.000 |
| 6:153011642:T:C | R189G | 1.000 |
| 6:153011650:G:A | S186F | 1.000 |
| 6:153011652:A:C | D185E | 1.000 |
| 6:153011652:A:T | D185E | 1.000 |
| 6:153011653:T:A | D185V | 1.000 |
| 6:153011653:T:C | D185G | 1.000 |
| 6:153011653:T:G | D185A | 1.000 |
| 6:153011654:C:A | D185Y | 1.000 |
| 6:153011654:C:G | D185H | 1.000 |
| 6:153011654:C:T | D185N | 1.000 |
| 6:153011655:T:A | R184S | 1.000 |
| 6:153011655:T:G | R184S | 1.000 |
| 6:153011656:C:A | R184I | 1.000 |
| 6:153011656:C:G | R184T | 1.000 |
| 6:153011661:C:A | M182I | 1.000 |
| 6:153011661:C:G | M182I | 1.000 |
| 6:153011661:C:T | M182I | 1.000 |
| 6:153011662:A:C | M182R | 1.000 |
| 6:153011662:A:G | M182T | 1.000 |
| 6:153011662:A:T | M182K | 1.000 |
| 6:153011664:T:A | L181F | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000005373 (6:153008883 A>G), RS1000037762 (6:153040842 T>C), RS1000050965 (6:153054650 C>T), RS1000054607 (6:153009291 C>G), RS1000064636 (6:153084328 A>G,T), RS1000069381 (6:153129791 T>A), RS1000093101 (6:153038052 A>G), RS1000112380 (6:153088852 A>G), RS1000167003 (6:153047537 C>T), RS1000260174 (6:153048654 T>C), RS1000297139 (6:153090659 C>T), RS1000298063 (6:153132423 T>C), RS1000302394 (6:153123847 T>C), RS1000311807 (6:153040934 G>C,T), RS1000352962 (6:153015949 A>G)
Disease associations
OMIM: gene MIM:607191 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
19 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001942_11 | Prostate cancer | 4.000000e-18 |
| GCST003121_10 | Alcohol dependence | 5.000000e-06 |
| GCST003127_8 | Lipoprotein (a) levels | 1.000000e-09 |
| GCST004904_34 | Body mass index | 3.000000e-11 |
| GCST004904_56 | Body mass index | 5.000000e-09 |
| GCST006627_66 | Diastolic blood pressure | 1.000000e-09 |
| GCST007325_198 | General risk tolerance (MTAG) | 2.000000e-08 |
| GCST007565_105 | Morning person | 3.000000e-15 |
| GCST009083_1 | Bacterial meningitis | 7.000000e-08 |
| GCST009086_1 | Pneumococcal meningitis | 4.000000e-07 |
| GCST009151_4 | High density lipoprotein cholesterol levels | 7.000000e-14 |
| GCST009181_9 | Cuneus cortex volume | 7.000000e-06 |
| GCST010241_403 | Apolipoprotein A1 levels | 1.000000e-10 |
| GCST010242_13 | HDL cholesterol levels | 4.000000e-17 |
| GCST010244_120 | Triglyceride levels | 1.000000e-08 |
| GCST010988_379 | Adult body size | 4.000000e-11 |
| GCST011320_12 | Type 2 diabetes or prostate cancer (pleiotropy) | 1.000000e-15 |
| GCST90020025_549 | Waist-to-hip ratio adjusted for BMI | 5.000000e-09 |
| GCST90020027_1026 | Waist-hip index | 6.000000e-09 |
EFO canonical traits (9, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0006925 | lipoprotein A measurement |
| EFO:0004340 | body mass index |
| EFO:0006336 | diastolic blood pressure |
| EFO:0008579 | risk-taking behaviour |
| EFO:0008328 | chronotype measurement |
| EFO:0004612 | high density lipoprotein cholesterol measurement |
| EFO:0004614 | apolipoprotein A 1 measurement |
| EFO:0004530 | triglyceride measurement |
| EFO:0007788 | BMI-adjusted waist-hip ratio |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4295974 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
2 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 12,011 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL417799 | SANGUINARIUM | 2 | 8,822 |
| CHEMBL490129 | SANGUINARIUM CHLORIDE | 2 | 3,189 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
1 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs672170 | Efficacy | 3 | antidepressants | Major Depressive Disorder |
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs672170 | RGS17 | 3 | 0.00 | 1 | antidepressants |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: other protein — RZ family
Most potent curated ligand interactions (8 total), top 8:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| compound I [PMID: 29351497] | Inhibition | 5.02 | pIC50 |
| celastrol | Inhibition | 4.98 | pIC50 |
| compound III [PMID: 29351497] | Inhibition | 4.84 | pIC50 |
| compound V [PMID: 29351497] | Inhibition | 4.84 | pIC50 |
| compound II [PMID: 29351497] | Inhibition | 4.72 | pIC50 |
| compound IV [PMID: 29351497] | Inhibition | 4.51 | pIC50 |
| irigenol | Inhibition | 4.33 | pIC50 |
| pseudochelerythrine | Inhibition | 4.14 | pIC50 |
ChEMBL bioactivities
8 potent at pChembl≥5 of 19 total, top 8 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.37 | IC50 | 423.2 | nM | IRIGENOL |
| 6.15 | Kd | 714 | nM | IRIGENOL |
| 6.00 | Kd | 1000 | nM | SANGUINARIUM |
| 5.99 | Kd | 1020 | nM | SANGUINARIUM CHLORIDE |
| 5.86 | IC50 | 1386 | nM | SANGUINARIUM CHLORIDE |
| 5.22 | IC50 | 6000 | nM | CELASTROL |
| 5.20 | IC50 | 6359 | nM | CELASTROL |
| 5.00 | IC50 | 1e+04 | nM | GAMBOGIC ACID |
PubChem BioAssay actives
3 with measured affinity, of 30 total; 3 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 24-methyl-5,7,18,20-tetraoxa-24-azoniahexacyclo[11.11.0.02,10.04,8.014,22.017,21]tetracosa-1(24),2,4(8),9,11,13,15,17(21),22-nonaene | 1377216: Binding affinity to RGS17 (unknown origin) by ITC method | kd | 1.0000 | uM |
| (2R,4aS,6aR,6aS,14aS,14bR)-10-hydroxy-2,4a,6a,6a,9,14a-hexamethyl-11-oxo-1,3,4,5,6,13,14,14b-octahydropicene-2-carboxylic acid | 1377215: Inhibition of RGS17 (unknown origin) GAP activity in presence of GTP by malachite green dye based assay | ic50 | 6.0000 | uM |
| (Z)-4-[(1S,2S,8R,17S,19R)-12-hydroxy-8,21,21-trimethyl-5-(3-methylbut-2-enyl)-8-(4-methylpent-3-enyl)-14,18-dioxo-3,7,20-trioxahexacyclo[15.4.1.02,15.02,19.04,13.06,11]docosa-4(13),5,9,11,15-pentaen-19-yl]-2-methylbut-2-enoic acid | 1377215: Inhibition of RGS17 (unknown origin) GAP activity in presence of GTP by malachite green dye based assay | ic50 | 10.0000 | uM |
CTD chemical–gene interactions
43 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, increases expression, increases methylation | 3 |
| Particulate Matter | increases abundance, affects cotreatment, increases expression, decreases expression | 3 |
| Benzo(a)pyrene | affects methylation, increases methylation | 2 |
| Cisplatin | increases response to substance, affects cotreatment, decreases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| GSK-J4 | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| terbufos | increases methylation | 1 |
| trichostatin A | increases expression, decreases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| aflatoxin B2 | affects methylation | 1 |
| hydroquinone | increases expression | 1 |
| isobutyl alcohol | affects cotreatment, decreases expression, increases abundance | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| 2,2’,4,4’,5-brominated diphenyl ether | increases expression | 1 |
| abrine | increases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| jinfukang | affects cotreatment, decreases expression | 1 |
| Docetaxel | increases response to substance | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Temozolomide | decreases expression | 1 |
| Fulvestrant | decreases methylation | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
| Arsenic | affects methylation | 1 |
| Vehicle Emissions | increases methylation | 1 |
| Calcitriol | increases expression, affects cotreatment | 1 |
| Diazinon | decreases methylation | 1 |
ChEMBL screening assays
20 unique, capped per target: 20 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4191647 | Binding | Inhibition of RGS17 (unknown origin) GAP activity in presence of GTP by malachite green dye based assay | Natural Products Discovered in a High-Throughput Screen Identified as Inhibitors of RGS17 and as Cytostatic and Cytotoxic Agents for Lung and Prostate Cancer Cell Lines. — J Nat Prod |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): alcohol dependence, bacterial meningitis, pneumococcal meningitis