RHD
gene geneOn this page
Also known as Rh30aRh4RhPIRhIIDIIIcCD240DSLC42A5
Summary
RHD (Rh blood group D antigen, HGNC:10009) is a protein-coding gene on chromosome 1p36.11, encoding Blood group Rh(D) polypeptide (Q02161). May be part of an oligomeric complex which is likely to have a transport or channel function in the erythrocyte membrane.
The Rh blood group system is the second most clinically significant of the blood groups, second only to ABO. It is also the most polymorphic of the blood groups, with variations due to deletions, gene conversions, and missense mutations. The Rh blood group includes this gene, which encodes the RhD protein, and a second gene that encodes both the RhC and RhE antigens on a single polypeptide. The two genes, and a third unrelated gene, are found in a cluster on chromosome 1. The classification of Rh-positive and Rh-negative individuals is determined by the presence or absence of the highly immunogenic RhD protein on the surface of erythrocytes. Multiple transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 6007 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Rh deficiency syndrome (Supportive, GenCC)
- GWAS associations: 7
- Clinical variants (ClinVar): 61 total
- Phenotypes (HPO): 28
- Druggable target: yes
- MANE Select transcript:
NM_016124
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:10009 |
| Approved symbol | RHD |
| Name | Rh blood group D antigen |
| Location | 1p36.11 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | Rh30a, Rh4, RhPI, RhII, DIIIc, CD240D, SLC42A5 |
| Ensembl gene | ENSG00000187010 |
| Ensembl biotype | protein_coding |
| OMIM | 111680 |
| Entrez | 6007 |
Gene structure
Transcript identifiers
Ensembl transcripts: 11 — 9 protein_coding, 1 protein_coding_CDS_not_defined, 1 retained_intron
ENST00000328664, ENST00000342055, ENST00000357542, ENST00000417538, ENST00000423253, ENST00000423810, ENST00000454452, ENST00000564398, ENST00000568195, ENST00000622561, ENST00000648012
RefSeq mRNA: 8 — MANE Select: NM_016124
NM_001127691, NM_001282867, NM_001282868, NM_001282869, NM_001282870, NM_001282871, NM_001282872, NM_016124
CCDS: CCDS262, CCDS53285, CCDS60027, CCDS60028, CCDS60029, CCDS60030, CCDS60031
Canonical transcript exons
ENST00000328664 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001333242 | 25306596 | 25306729 |
| ENSE00001653457 | 25328898 | 25330445 |
| ENSE00001686760 | 25321889 | 25321962 |
| ENSE00003511155 | 25284573 | 25284759 |
| ENSE00003524278 | 25290641 | 25290791 |
| ENSE00003585230 | 25272509 | 25272695 |
| ENSE00003644044 | 25301520 | 25301686 |
| ENSE00003669934 | 25300946 | 25301093 |
| ENSE00003680748 | 25317000 | 25317079 |
| ENSE00003682971 | 25303322 | 25303459 |
Expression profiles
Bgee: expression breadth ubiquitous, 170 present calls, max score 89.16.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.6300 / max 227.0801, expressed in 77 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 1494 | 0.2134 | 47 |
| 1491 | 0.1257 | 50 |
| 1493 | 0.1100 | 33 |
| 1495 | 0.0913 | 26 |
| 201411 | 0.0483 | 14 |
| 1492 | 0.0413 | 16 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| buccal mucosa cell | CL:0002336 | 89.16 | silver quality |
| trabecular bone tissue | UBERON:0002483 | 80.67 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 80.14 | gold quality |
| monocyte | CL:0000576 | 79.65 | gold quality |
| mononuclear cell | CL:0000842 | 79.38 | gold quality |
| leukocyte | CL:0000738 | 79.14 | gold quality |
| granulocyte | CL:0000094 | 78.76 | gold quality |
| bone marrow | UBERON:0002371 | 73.71 | gold quality |
| blood | UBERON:0000178 | 72.36 | gold quality |
| minor salivary gland | UBERON:0001830 | 71.88 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 71.09 | gold quality |
| right uterine tube | UBERON:0001302 | 69.95 | gold quality |
| bone marrow cell | CL:0002092 | 68.86 | gold quality |
| stromal cell of endometrium | CL:0002255 | 68.71 | gold quality |
| right ovary | UBERON:0002118 | 68.71 | gold quality |
| endocervix | UBERON:0000458 | 68.13 | gold quality |
| left ovary | UBERON:0002119 | 67.75 | gold quality |
| mouth mucosa | UBERON:0003729 | 67.75 | gold quality |
| spleen | UBERON:0002106 | 67.69 | gold quality |
| right coronary artery | UBERON:0001625 | 67.20 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 66.98 | gold quality |
| ectocervix | UBERON:0012249 | 66.08 | gold quality |
| right lobe of liver | UBERON:0001114 | 65.63 | gold quality |
| right lung | UBERON:0002167 | 65.58 | gold quality |
| right atrium auricular region | UBERON:0006631 | 65.55 | gold quality |
| body of uterus | UBERON:0009853 | 65.10 | gold quality |
| cerebellar cortex | UBERON:0002129 | 64.93 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 64.92 | gold quality |
| popliteal artery | UBERON:0002250 | 64.46 | gold quality |
| tibial artery | UBERON:0007610 | 64.46 | gold quality |
Single-cell (SCXA)
Detected in 6 experiment(s), a significant marker in 4.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-10042 | yes | 43.52 |
| E-MTAB-9388 | yes | 8.53 |
| E-ANND-3 | yes | 5.23 |
| E-HCAD-10 | yes | 3.23 |
| E-MTAB-9067 | no | 3.07 |
| E-MTAB-9801 | no | 3.02 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AR, CEBPB, EGR1, ESR2, GATA5, JUN, MEF2A, MEF2B, NFATC3, NFKB, NR2F1, NR5A1, OTX2, PBX1, RUNX1
miRNA regulators (miRDB)
82 targeting RHD, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-4455 | 100.00 | 65.48 | 1587 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-4650-5P | 99.98 | 64.69 | 999 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-1250-3P | 99.96 | 70.04 | 4038 |
| HSA-MIR-1297 | 99.91 | 73.41 | 3162 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-6780A-5P | 99.88 | 66.69 | 2776 |
| HSA-MIR-182-5P | 99.87 | 74.03 | 2589 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-4495 | 99.82 | 72.08 | 3080 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-139-5P | 99.80 | 69.50 | 1399 |
| HSA-MIR-26A-5P | 99.78 | 73.52 | 2303 |
| HSA-MIR-26B-5P | 99.78 | 73.51 | 2305 |
| HSA-MIR-148A-3P | 99.74 | 73.77 | 1700 |
| HSA-MIR-148B-3P | 99.74 | 73.75 | 1700 |
| HSA-MIR-152-3P | 99.74 | 73.75 | 1703 |
| HSA-MIR-4465 | 99.71 | 72.56 | 2096 |
Literature-anchored findings (GeneRIF, showing 40)
- Molecular basis of D antigenic epitopes (PMID:10590042)
- Epitope mapping of four monoclonal antibodies specific for the human RhD antigen (PMID:11716963)
- RHCE represents the ancestral RH position, while RHD is the duplicated gene (PMID:11902138)
- characterization of 5 new RHD alleles, dubbed DAU-0 to DAU-4, that share a T379M substitution and occurr in a cDe haplotype. (PMID:12070041)
- Molecular analysis of Hor+, Mol+ variants revealed a hybrid gene structure RHCe-D(5)-Ce, in which exon 5 of RHCE (RHCe allele) was replaced by exon 5 of RHD (the so-called RHCeVA allele resulting in several AA alterations in the external loop 4 CeVA. (PMID:12084172)
- Cell-surface expression of RhD blood group polypeptide is posttranscriptionally regulated by the RhAG glycoprotein. (PMID:12130520)
- RHD maternal-fetal genotype incompatibility increases schizophrenia susceptibility (PMID:12439825)
- evaluation of posttransplant sensitization in blood this group-negative renal transplantation recipients (PMID:12493401)
- strong selection might be working to maintain the RHCE/RHD antigen variation in the two-locus system (PMID:12857961)
- Fetal RHD was detected in all 23 mothers with RhD pos child. (PMID:15112469)
- CD5+ CLL cells are the most effective cell type in processing and presenting purified Rh protein to autoreactive T helper cells. (PMID:15284121)
- Five new RHD alleles were characterized carrying 399G > T, 680T > C, 833G > A, 851C > T, and 1015G > A, respectively. (PMID:15318849)
- Review. The genetic, structural, and immunologic features of RHD are reviewed. (PMID:15373666)
- 6 new alleles are described: A1226T, T667G,G697C,T1136C,G998A,and C674T. (PMID:16181204)
- 2 new weak D types (31 & 32)were found, C17T & A1121T, coding for amino acid exchanges in predicted intracellular RhD polypeptide stretches, with antigen densities of approximately 130 & 50 D sites per red blood cell, respectively. (PMID:16181207)
- The transcripts with exon 9, exons 8 and 9, exons 7 and 9, and exons 7-9 spliced out compared normal RhD mRNA. (PMID:16510313)
- By describing the RHD(F223V) (602C>G) and RHD(T201R, F223V) (602C>G and 667T>G) alleles formal proof is given for the origin of the non-Eurasian cluster. (PMID:16584437)
- A novel pattern of RhD exon amplification was detected, characterized, and named (DVI type 4). This novel structure is the most frequent cause of DVI in Spain. (PMID:16584438)
- Review. 3-D models of the subunit and oligomeric architecture are proposed, using hydrophobic cluster analysis. (PMID:16584906)
- RHD 1227A allele is an important genetic marker of Rh DEL phenotype; RHD 1227A is recessive to normal RHD allele and dominant to RHd allele; RHD 1227A allele is an ancestral, but not a spontaneously mutated allele. (PMID:17029203)
- the mRNA splicing mechanism of RHD gene was very complex, and nine novel alternative splicing isoforms were identified (PMID:17035176)
- In this [Portuguese] population, 1.3% of the serologic RhD-negative women have an RHD-positive allele. (PMID:17497744)
- DCS-1, DCS-2, and DFV carry amino acid substitutions at the extracellular vestibule, visualized by 3-dimensional modeling. (PMID:17900276)
- The investigators analyzed the admixture genetic components of the Rh blood group in two socioeconomic groups in Venezuela. (PMID:18027815)
- RHD genes in population of Fujian Province are polymorphic. (PMID:18426681)
- Anti-Rh(D) may have application for islet cell proliferation in diabetes mellitus treatment for Rh(D)-positive subjects. (PMID:18544617)
- relatively high perioperative transfusion needs of D- orthotopic liver transplantation recipients can be safely met with D+ components with very low risk of inducing anti-D with the newer, mycophenolate mofetil-centered immune suppression regimen (PMID:19055536)
- 74 blood donor samples carrying weak D and DEL phenotypes with the potential of causing secondary immunizations in recipients were reclassified as D+. (PMID:19170995)
- variant sequences in Intron 7 of Rh blood group D antigen nucleotides AG-GT at both sides of the segment may be related to this molecular even as AG-GT may cut intron 7 with its normal splicing site (GT-AG) into two “new introns” (PMID:19364677)
- The proximal RHD/RHCE promoter regions contain cis-regulatory binding motifs and an internal sequence-dependent region that together regulate transcription suggesting that this region may be relevant in the weak expression of RhD (PMID:19374729)
- More precise determination of D antigen helps to reveal the Rhesus factor (PMID:19388479)
- Molecular bases of unexpressed RHD alleles in Chinese D- persons. (PMID:19392776)
- combined haplotype of 1227G>A and IVS7 923C>T alleles was apparent in >95% DEL Chinese individuals. RHD1227A mutation significantly increased aberrant mRNA splicing, producing a hybrid RHD mRNA lacking exon (PMID:20188798)
- four RhD protein varients possessed amino acid substititions at postions 114 and 122 (PMID:20233350)
- These results indicate that RhD phenotype might influence not only the effect of toxoplasmosis but also the effect of aging on specific personality traits. (PMID:20608477)
- 4 novel RHD alleles were identified: RHD(S256P), RHD(L390L), RHD(F410V), and RHD(IVS4-2a>g). (PMID:20723165)
- This QF-PCR method accurately determines RHD zygosity and will help predict the risk that a fetus will inherit RHD. (PMID:21072752)
- next-generation sequencing offers a new development for high-throughput and clonal sequencing for molecular RHD genotyping. (PMID:21133932)
- Distribution of weak D types in the Croatian population. (PMID:21269342)
- The use of cell-free fetal DNA in prenatal noninvasive early detection of fetal RhD status and gender by real-time PCR is highly sensitive and accurate as early as the 11th week of gestation for RhD status and the 7th week of gestation for fetal sex. (PMID:21488716)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | rhd | ENSDARG00000002194 |
| mus_musculus | Rhd | ENSMUSG00000028825 |
| rattus_norvegicus | Rhd | ENSRNOG00000017130 |
| drosophila_melanogaster | Rh50 | FBGN0028699 |
| caenorhabditis_elegans | WBGENE00004358 | |
| caenorhabditis_elegans | WBGENE00004359 |
Paralogs (4): RHAG (ENSG00000112077), RHBG (ENSG00000132677), RHCG (ENSG00000140519), RHCE (ENSG00000188672)
Protein
Protein identifiers
Blood group Rh(D) polypeptide — Q02161 (reviewed: Q02161)
Alternative names: RHXIII, Rh polypeptide 2, Rhesus D antigen
All UniProt accessions (6): A0A1B1R0Y1, A0A3B3IU43, E7EVW1, Q02161, H3BT10, Q5XLT3
UniProt curated annotations — full annotation on UniProt →
Function. May be part of an oligomeric complex which is likely to have a transport or channel function in the erythrocyte membrane.
Subcellular location. Cell membrane.
Tissue specificity. Restricted to tissues or cell lines expressing erythroid characters.
Post-translational modifications. Palmitoylated.
Disease relevance. Hemolytic disease of fetus and newborn, RH-induced (HDFNRH) [MIM:619462] A disease that occurs in pregnancies in which mothers who lack the D antigen (RhD) of the Rh blood group have been exposed to the RhD-positive red cells of the fetus. The resulting maternal autoantibodies cross the placenta and destroy fetal red cells. The disease is caused by variants affecting the gene represented in this entry.
Polymorphism. RHD and RHCE are responsible for the Rh blood group system. The molecular basis of the Tar=Rh40 blood group antigen is a variant in position 110. Homozygous deletion of the RHD gene results in Rh-negative (dd) individuals. Some polymorhisms lead to weak RHD expression. This phenotype called weak D, formerly known as D(u), is observed in about 0.2% to 1% of Caucasians. Moderately decreased RHD expression results in a phenotype called DHMi.
Similarity. Belongs to the ammonium transporter (TC 2.A.49) family. Rh subfamily.
Isoforms (6)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q02161-1 | 1, Long | yes |
| Q02161-2 | 2, Short 1 | |
| Q02161-3 | 3, Short 2 | |
| Q02161-4 | 4 | |
| Q02161-5 | 5 | |
| Q02161-6 | 6 |
RefSeq proteins (8): NP_001121163, NP_001269796, NP_001269797, NP_001269798, NP_001269799, NP_001269800, NP_001269801, NP_057208* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002229 | RhesusRHD | Family |
| IPR024041 | NH4_transpt_AmtB-like_dom | Domain |
| IPR029020 | Ammonium/urea_transptr | Homologous_superfamily |
Pfam: PF00909
UniProt features (58 total): sequence variant 30, transmembrane region 11, sequence conflict 8, splice variant 7, initiator methionine 1, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q02161-F1 | 84.91 | 0.47 |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-9037628 | Rhesus blood group biosynthesis |
MSigDB gene sets: 192 (showing top):
GSE45365_HEALTHY_VS_MCMV_INFECTION_CD8_TCELL_IFNAR_KO_DN, GSE45365_NK_CELL_VS_CD8A_DC_DN, E2F_Q4, IVANOVA_HEMATOPOIESIS_MATURE_CELL, GOLDRATH_ANTIGEN_RESPONSE, GNF2_ANK1, E2F_Q3, GATA3_01, MORI_SMALL_PRE_BII_LYMPHOCYTE_DN, GNF2_SPTA1, GNF2_PCAF, GOBP_TRANSMEMBRANE_TRANSPORT, GATA_Q6, GNF2_MAP2K3, REACTOME_METABOLISM_OF_CARBOHYDRATES_AND_CARBOHYDRATE_DERIVATIVES
GO Biological Process (2): ammonium transmembrane transport (GO:0072488), ammonium homeostasis (GO:0097272)
GO Molecular Function (2): ammonium channel activity (GO:0008519), protein binding (GO:0005515)
GO Cellular Component (2): plasma membrane (GO:0005886), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Blood group systems biosynthesis | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| transmembrane transport | 1 |
| nitrogen compound transport | 1 |
| inorganic ion homeostasis | 1 |
| channel activity | 1 |
| ammonium transmembrane transport | 1 |
| binding | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
0 interactions, top by confidence (×1000):
IntAct
1 interactions, top by confidence:
BioGRID (9): RHD (Two-hybrid), RHD (Two-hybrid), RHD (Two-hybrid), RHD (Two-hybrid), RHD (Two-hybrid), RHD (Two-hybrid), RHD (Two-hybrid), RHD (Affinity Capture-MS), RHD (Affinity Capture-Western)
ESM2 similar proteins: O88298, P18577, P58873, Q02094, Q02161, Q0IIV2, Q18PF6, Q19KI0, Q20CR3, Q28426, Q28427, Q28446, Q28481, Q28812, Q28813, Q28814, Q28849, Q2T9S6, Q3BBX8, Q3BCQ4, Q3BCQ5, Q3BCQ7, Q4VUI0, Q4VUZ1, Q5NVA3, Q5U4V1, Q68FT6, Q69D47, Q6DCG4, Q6WRY0, Q7T070, Q7TNK7, Q7TNN9, Q8BUX5, Q8CBB2, Q8CF94, Q8JI14, Q8WMW0, Q8WMW2, Q8WNQ5
Diamond homologs: O88298, P18577, Q02094, Q02161, Q0IIV2, Q18PF5, Q18PF6, Q19KH7, Q19KI0, Q20CR3, Q28426, Q28427, Q28446, Q28481, Q28812, Q28813, Q28814, Q28849, Q2T9S6, Q3BBX7, Q3BBX8, Q3BCQ4, Q3BCQ5, Q3BCQ7, Q4VUI0, Q4VUZ1, Q5NVA3, Q5U4V1, Q68FT6, Q69D47, Q69D48, Q6DCG4, Q6WRY0, Q6XL41, Q7T070, Q7T3R4, Q7TNK7, Q7TNN9, Q8BUX5, Q8CF94
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
61 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 27 |
| Likely benign | 10 |
| Benign | 5 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1928 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:25300944:A:AG | acceptor_gain | 1.0000 |
| 1:25300945:G:GG | acceptor_gain | 1.0000 |
| 1:25300945:GACA:G | acceptor_gain | 1.0000 |
| 1:25301089:GCTGG:G | donor_gain | 1.0000 |
| 1:25301093:GGT:G | donor_loss | 1.0000 |
| 1:25301094:GTAAG:G | donor_loss | 1.0000 |
| 1:25301514:CCCCA:C | acceptor_loss | 1.0000 |
| 1:25301516:CCA:C | acceptor_loss | 1.0000 |
| 1:25301517:CAGG:C | acceptor_loss | 1.0000 |
| 1:25301518:A:AG | acceptor_gain | 1.0000 |
| 1:25301518:A:T | acceptor_loss | 1.0000 |
| 1:25301519:G:GC | acceptor_loss | 1.0000 |
| 1:25301519:G:GG | acceptor_gain | 1.0000 |
| 1:25301519:GGC:G | acceptor_gain | 1.0000 |
| 1:25301683:CAAGG:C | donor_loss | 1.0000 |
| 1:25301685:AGGT:A | donor_loss | 1.0000 |
| 1:25301687:GTGA:G | donor_loss | 1.0000 |
| 1:25301688:T:A | donor_loss | 1.0000 |
| 1:25303317:TGCAG:T | acceptor_loss | 1.0000 |
| 1:25303318:GCAG:G | acceptor_loss | 1.0000 |
| 1:25303319:CAG:C | acceptor_loss | 1.0000 |
| 1:25303320:A:G | acceptor_loss | 1.0000 |
| 1:25303321:G:GC | acceptor_loss | 1.0000 |
| 1:25303321:GACTT:G | acceptor_gain | 1.0000 |
| 1:25284543:C:A | acceptor_gain | 0.9900 |
| 1:25284552:C:CA | acceptor_gain | 0.9900 |
| 1:25284572:G:GA | acceptor_gain | 0.9900 |
| 1:25284736:G:T | donor_gain | 0.9900 |
| 1:25290639:A:AG | acceptor_gain | 0.9900 |
| 1:25290640:G:GG | acceptor_gain | 0.9900 |
AlphaMissense
2711 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:25301627:A:C | S248R | 0.953 |
| 1:25301629:C:A | S248R | 0.953 |
| 1:25301629:C:G | S248R | 0.953 |
| 1:25300994:T:C | F179L | 0.930 |
| 1:25300996:T:A | F179L | 0.930 |
| 1:25300996:T:G | F179L | 0.930 |
| 1:25300982:T:C | F175L | 0.920 |
| 1:25300984:C:A | F175L | 0.920 |
| 1:25300984:C:G | F175L | 0.920 |
| 1:25284647:A:C | S75R | 0.902 |
| 1:25284649:C:A | S75R | 0.902 |
| 1:25284649:C:G | S75R | 0.902 |
| 1:25284692:T:A | W90R | 0.897 |
| 1:25284692:T:C | W90R | 0.897 |
| 1:25284659:T:C | F79L | 0.894 |
| 1:25284661:C:A | F79L | 0.894 |
| 1:25284661:C:G | F79L | 0.894 |
| 1:25301534:T:A | W217R | 0.890 |
| 1:25301534:T:C | W217R | 0.890 |
| 1:25328919:T:C | F417L | 0.885 |
| 1:25328921:T:A | F417L | 0.885 |
| 1:25328921:T:G | F417L | 0.885 |
| 1:25284614:T:C | F64L | 0.878 |
| 1:25284616:C:A | F64L | 0.878 |
| 1:25284616:C:G | F64L | 0.878 |
| 1:25328898:T:C | F410L | 0.875 |
| 1:25328900:T:A | F410L | 0.875 |
| 1:25328900:T:G | F410L | 0.875 |
| 1:25321954:T:C | F407L | 0.874 |
| 1:25321956:C:A | F407L | 0.874 |
dbSNP variants (sampled 300 via entrez): RS1000107327 (1:25294833 G>C), RS1000138074 (1:25320263 A>G), RS1000178233 (1:25300020 G>A), RS1000854848 (1:25273836 G>C), RS1000885917 (1:25272839 C>T), RS1001712617 (1:25291321 T>A,C), RS1001807263 (1:25314201 G>A), RS1001890617 (1:25307988 T>C), RS1002152448 (1:25309365 C>T), RS1002186066 (1:25290213 G>C), RS1002223763 (1:25273176 C>T), RS1002456051 (1:25286257 G>C), RS1003105544 (1:25324505 G>A), RS1003561665 (1:25302844 CA>C,CAA), RS1003725543 (1:25281735 G>A)
Disease associations
OMIM: gene MIM:111680 | disease phenotypes: MIM:619462
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Rh deficiency syndrome | Supportive | Autosomal recessive |
Mondo (2): hemolytic disease of fetus and newborn, RH-induced (MONDO:0859172), Rh deficiency syndrome (MONDO:0019107)
Orphanet (0):
HPO phenotypes
28 total (28 of 28 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000952 | Jaundice |
| HP:0001343 | Kernicterus |
| HP:0001433 | Hepatosplenomegaly |
| HP:0001511 | Intrauterine growth retardation |
| HP:0001561 | Polyhydramnios |
| HP:0001562 | Oligohydramnios |
| HP:0001649 | Tachycardia |
| HP:0001744 | Splenomegaly |
| HP:0001789 | Hydrops fetalis |
| HP:0001791 | Fetal ascites |
| HP:0001878 | Hemolytic anemia |
| HP:0001923 | Reticulocytosis |
| HP:0001972 | Macrocytic anemia |
| HP:0002240 | Hepatomegaly |
| HP:0002789 | Tachypnea |
| HP:0002904 | Hyperbilirubinemia |
| HP:0004444 | Spherocytosis |
| HP:0004446 | Stomatocytosis |
| HP:0005268 | Miscarriage |
| HP:0005502 | Increased red cell osmotic fragility |
| HP:0011273 | Anisocytosis |
| HP:0012418 | Hypoxemia |
| HP:0020181 | Reduced haptoglobin level |
| HP:0025435 | Increased circulating lactate dehydrogenase concentration |
| HP:0025671 | Fetal pericardial effusion |
| HP:0025676 | Fetal pleural effusion |
| HP:0032231 | Hypochromia |
| HP:0032366 | Positive direct antiglobulin test |
GWAS associations
7 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST90002391_54 | Mean corpuscular hemoglobin concentration | 5.000000e-45 |
| GCST90002392_155 | Mean corpuscular volume | 6.000000e-68 |
| GCST90002396_117 | Mean reticulocyte volume | 5.000000e-107 |
| GCST90002397_616 | Mean spheric corpuscular volume | 7.000000e-94 |
| GCST90002400_16 | Plateletcrit | 1.000000e-84 |
| GCST90002401_7 | Platelet distribution width | 1.000000e-32 |
| GCST90002402_531 | Platelet count | 6.000000e-27 |
EFO canonical traits (5, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004528 | mean corpuscular hemoglobin concentration |
| EFO:0010701 | mean reticulocyte volume |
| EFO:0007985 | platelet crit |
| EFO:0007984 | platelet component distribution width |
| EFO:0004309 | platelet count |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| C562717 | Rh Deficiency Syndrome (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL3712996 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
6 total (human), top 6 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| triphenyl phosphate | affects expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects cotreatment, increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| Amphotericin B | increases expression | 1 |
| Lipopolysaccharides | affects cotreatment, increases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Associated diseases: Rh deficiency syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): hemolytic disease of fetus and newborn, RH-induced, Rh deficiency syndrome