RHEB
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Summary
RHEB (Ras homolog, mTORC1 binding, HGNC:10011) is a protein-coding gene on chromosome 7q36.1, encoding GTP-binding protein Rheb (Q15382). Small GTPase that acts as an allosteric activator of the canonical mTORC1 complex, an evolutionarily conserved central nutrient sensor that stimulates anabolic reactions and macromolecule biosynthesis to promote cellular biomass generation and growth. It is a selective cancer dependency (DepMap: 40.6% of cell lines).
This gene is a member of the small GTPase superfamily and encodes a lipid-anchored, cell membrane protein with five repeats of the RAS-related GTP-binding region. This protein is vital in regulation of growth and cell cycle progression due to its role in the insulin/TOR/S6K signaling pathway. The protein has GTPase activity and shuttles between a GDP-bound form and a GTP-bound form, and farnesylation of the protein is required for this activity. Three pseudogenes have been mapped, two on chromosome 10 and one on chromosome 22.
Source: NCBI Gene 6009 — RefSeq curated summary.
At a glance
- Gene–disease (curated): complex neurodevelopmental disorder (Limited, GenCC)
- GWAS associations: 2
- Clinical variants (ClinVar): 34 total — 6 pathogenic, 1 likely-pathogenic
- Druggable target: yes
- Cancer dependency (DepMap): dependent in 40.6% of screened cell lines
- MANE Select transcript:
NM_005614
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:10011 |
| Approved symbol | RHEB |
| Name | Ras homolog, mTORC1 binding |
| Location | 7q36.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000106615 |
| Ensembl biotype | protein_coding |
| OMIM | 601293 |
| Entrez | 6009 |
Gene structure
Transcript identifiers
Ensembl transcripts: 9 — 6 protein_coding, 2 retained_intron, 1 nonsense_mediated_decay
ENST00000262187, ENST00000470072, ENST00000470370, ENST00000472642, ENST00000478470, ENST00000482053, ENST00000496004, ENST00000876654, ENST00000924902
RefSeq mRNA: 1 — MANE Select: NM_005614
NM_005614
CCDS: CCDS5927
Canonical transcript exons
ENST00000262187 — 8 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001200523 | 151519460 | 151519895 |
| ENSE00001321653 | 151466012 | 151467211 |
| ENSE00003459693 | 151484737 | 151484804 |
| ENSE00003462668 | 151470571 | 151470652 |
| ENSE00003464369 | 151490943 | 151491014 |
| ENSE00003489666 | 151471394 | 151471441 |
| ENSE00003529508 | 151477333 | 151477415 |
| ENSE00003576426 | 151471549 | 151471605 |
Expression profiles
Bgee: expression breadth ubiquitous, 218 present calls, max score 99.19.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 4.7442 / max 108.5483, expressed in 1673 samples.
FANTOM5 promoters (7 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 86907 | 1.8292 | 1252 |
| 86909 | 1.5371 | 933 |
| 86908 | 0.7085 | 423 |
| 86905 | 0.5520 | 222 |
| 86906 | 0.0910 | 45 |
| 86902 | 0.0194 | 9 |
| 86903 | 0.0070 | 2 |
Top tissues by expression
252 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| ventricular zone | UBERON:0003053 | 99.19 | gold quality |
| embryo | UBERON:0000922 | 98.55 | gold quality |
| ganglionic eminence | UBERON:0004023 | 98.55 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 98.52 | gold quality |
| lower esophagus | UBERON:0013473 | 98.51 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 98.45 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 98.41 | gold quality |
| mucosa of stomach | UBERON:0001199 | 98.38 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 98.32 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 98.32 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 98.22 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 98.16 | gold quality |
| left adrenal gland | UBERON:0001234 | 98.15 | gold quality |
| right frontal lobe | UBERON:0002810 | 98.14 | gold quality |
| body of uterus | UBERON:0009853 | 98.12 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 98.10 | gold quality |
| left uterine tube | UBERON:0001303 | 98.07 | gold quality |
| popliteal artery | UBERON:0002250 | 98.05 | gold quality |
| tibial artery | UBERON:0007610 | 98.05 | gold quality |
| right adrenal gland | UBERON:0001233 | 97.99 | gold quality |
| tibial nerve | UBERON:0001323 | 97.99 | gold quality |
| right atrium auricular region | UBERON:0006631 | 97.99 | gold quality |
| right lung | UBERON:0002167 | 97.96 | gold quality |
| islet of Langerhans | UBERON:0000006 | 97.95 | gold quality |
| left coronary artery | UBERON:0001626 | 97.88 | gold quality |
| ascending aorta | UBERON:0001496 | 97.85 | gold quality |
| adenohypophysis | UBERON:0002196 | 97.85 | gold quality |
| thoracic aorta | UBERON:0001515 | 97.83 | gold quality |
| aorta | UBERON:0000947 | 97.78 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 97.77 | gold quality |
Single-cell (SCXA)
Detected in 8 experiment(s), a significant marker in 7.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-8142 | yes | 65.12 |
| E-GEOD-137537 | yes | 30.09 |
| E-MTAB-7316 | yes | 23.43 |
| E-CURD-46 | yes | 10.33 |
| E-CURD-114 | yes | 10.18 |
| E-HCAD-13 | yes | 7.32 |
| E-GEOD-81383 | no | 353.64 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
74 targeting RHEB, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-5193 | 100.00 | 67.26 | 1744 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-4803 | 99.98 | 71.99 | 3117 |
| HSA-MIR-302C-5P | 99.97 | 72.56 | 3642 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-4666A-3P | 99.96 | 71.71 | 3434 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-MIR-1250-3P | 99.96 | 70.04 | 4038 |
| HSA-MIR-141-3P | 99.94 | 72.79 | 2421 |
| HSA-MIR-200A-3P | 99.94 | 72.68 | 2420 |
| HSA-MIR-3143 | 99.93 | 71.96 | 3104 |
| HSA-MIR-4778-3P | 99.93 | 70.40 | 1818 |
| HSA-MIR-338-5P | 99.92 | 72.34 | 2951 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-1323 | 99.83 | 69.89 | 2471 |
| HSA-MIR-4694-3P | 99.79 | 69.53 | 2640 |
| HSA-MIR-4517 | 99.76 | 69.19 | 1867 |
| HSA-MIR-6885-3P | 99.75 | 70.36 | 3187 |
| HSA-MIR-548O-3P | 99.74 | 69.30 | 2228 |
| HSA-MIR-4428 | 99.73 | 66.41 | 1733 |
| HSA-MIR-6757-3P | 99.63 | 66.88 | 1089 |
| HSA-MIR-142-3P | 99.62 | 71.30 | 974 |
| HSA-MIR-7112-5P | 99.59 | 65.76 | 104 |
| HSA-MIR-3682-3P | 99.58 | 67.63 | 865 |
| HSA-MIR-510-3P | 99.54 | 70.06 | 2965 |
| HSA-MIR-6733-3P | 99.54 | 67.80 | 1281 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 40.6% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 40)
- Rheb binds tuberous sclerosis complex 2 (TSC2) and promotes S6 kinase activation in a rapamycin- and farnesylation-dependent manner (PMID:12842888)
- transient expression of the wild type Rheb1 or Rheb2 causes activation of p70S6K, while expression of Rheb1D60K mutant results in inhibition of basal level activity of p70S6K (PMID:12869548)
- Rheb acts downstream of TSC1/TSC2 and upstream of mTOR to regulate cell growth (PMID:12869586)
- Rheb has a role in regulation of B-Raf kinase activity along with tuberin but without involvement of mTOR (PMID:15150271)
- To investigate the function of TSC2 and Rheb in mTOR signaling, we analyzed the TSC2-stimulated Rheb GTPase activity. (PMID:15340059)
- The GTPase domain of human Rheb (hRheb) has been recombinantly expressed in Escherichia coli, purified and cocrystallized in complexes with GDP, GTP and GppNHp. (PMID:15388940)
- Rheb forms a new group of the Ras/Rap subfamily and uses a novel GTP hydrolysis mechanism that utilizes Asn1643 of the tuberous sclerosis complex 2 GTPase-activating protein domain instead of Gln64 of Rheb as the catalytic residue (PMID:15728574)
- results suggest that Rheb regulates endocytic trafficking pathway independent of the previously identified mTOR pathway. (PMID:15809346)
- The target of rapamycin (TOR) complex 1 is a direct target of Rheb-GTP, whose binding enables activation of the TOR kinase. (PMID:15854902)
- binding of Rheb to endogenous and recombinant mTOR is reversibly inhibited by withdrawal of all extracellular amino acids or just leucine (PMID:15878852)
- Data show that the farnesyl transferase inhibitor (FTI) SCH66336 (lonafarnib) inhibits Rheb farnesylation and mTOR signaling. (PMID:16006564)
- Data show that Rheb like-1 protein (RhebL1) rescues mTOR signaling during nutrient withdrawal, and identify critical residues in Rheb and RhebL1 which are required for their efficient activation of mTOR signaling. (PMID:16098514)
- Our results demonstrate that Ebp1 is a new dsRNA-binding protein that acts as a cellular inhibitor of eIF2alpha phosphorylation suggesting that it could be involved in protein translation control (PMID:16631613)
- Rheb has a central role in the regulation of the Ras/B-Raf/C-Raf/MEK signaling network (PMID:16803888)
- The TSC/Rheb/mTOR pathway plays a critical role in the regulation of E(2)-induced proliferation. (PMID:17018601)
- Rheb signaling to mTOR in vivo requires a Rheb switch 2-dependent interaction with an element other than the three known polypeptide components of TOR complex 1 (PMID:17470430)
- Bnip3, a hypoxia-inducible Bcl-2 homology 3 domain-containing protein, directly binds Rheb and inhibits the mTOR pathway. (PMID:17928295)
- findings suggest that FKBP38 is an endogenous inhibitor of mTOR, whose inhibitory activity is antagonized by Rheb in response to growth factor stimulation and nutrient availability (PMID:17991864)
- RHEB could be used cytopathologically to distinguish fibroadenoma from malignant breast carcinomas as a secondary diagnostic tool. (PMID:18324915)
- Constitutively active Rheb induces oncogenic transformation. (PMID:18521078)
- PLD1 is required for Rheb activation of the mTOR pathway. (PMID:18550814)
- ATF6alpha-Rheb-mTOR signaling promotes survival of dormant tumor cells in vivo (PMID:18650380)
- FKBP38 is a bona fide effector of Rheb and the ability to interact with FKBP38 is important for Rheb as an activator of mTOR (PMID:18658153)
- Rheb overexpression is associated with prostate cancer (PMID:18708577)
- RHEB overexpression accelerates lymphomagenesis in the Eu-myc model (PMID:18708578)
- Inhibition of PI3K or mTOR reduced the level of Rap1B, which acts downstream of Rheb and mTOR. The ubiquitin E3 ligase Smurf2 mediates the restriction of Rap1B by initiating its degradation. (PMID:18842593)
- RalGDS and RalA act downstream of Rheb and that RalA activation is a crucial step in nutrient-induced mTORC1 activation (PMID:18948269)
- FKBP38 is not the long-sought Rheb effector linking Rheb to mTORC1 activation. (PMID:19222999)
- TCTP interacts with hRheb and accelerates its GDP release in vitro. (PMID:19570981)
- Backbone and side chain assignments were obtained from three dimensional NMR spectra. (PMID:19636822)
- Data inidicate that FTS could be a promising treatment for Rheb- and mTOR-dependent cancers. (PMID:19838215)
- Rheb GTPase controls apoptosis by regulating interaction of FKBP38 with Bcl-2 and Bcl-XL (PMID:20048149)
- integrity of late endosomes is essential for amino acid- and insulin-stimulated mTORC1 signaling and blocking the early/late endosomal conversion prevents mTOR from interacting with Rheb in the late endosomal compartment (PMID:20053679)
- Rheb potentiates proliferation of prostate cancer cells (PMID:20127734)
- Findings illustrate a mechanism for the cardioprotective effects of lovastatin through inhibition of Rheb and mTORC1 and promotion of a differentiated vascular smooth muscle cell phenotype. (PMID:20375271)
- RHEB is an MTOR activator that facilitates multistage carcinogenesis through induction of multiple oncogenic mechanisms (PMID:20388784)
- Results suggest that Rheb is a critical target for farnesyltransferase inhibitor therapy in non-small cell lung cancer cells. (PMID:20554106)
- Ras homolog enriched in brain (Rheb) enhances apoptotic signaling (PMID:20685651)
- The activating transcription factor (ATF)6alpha/Rheb pathway is altered in Huntington’s disease, as the decrease in ATF6alpha processing is accompanied by a decrease in the accumulation of Rheb. (PMID:20732420)
- Rheb controls proliferation of TSC2-deficient cells by a mechanism that involves regulation of AMPK and p27, and that Rheb is a potential target for TSC/LAM therapy. (PMID:20818424)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Rheb | ENSMUSG00000028945 |
| rattus_norvegicus | Rheb | ENSRNOG00000050578 |
Paralogs (35): RALA (ENSG00000006451), REM1 (ENSG00000088320), RASL10A (ENSG00000100276), RASD2 (ENSG00000100302), RASL12 (ENSG00000103710), RASD1 (ENSG00000108551), RERGL (ENSG00000111404), RAP1A (ENSG00000116473), RASL11A (ENSG00000122035), RAP2C (ENSG00000123728), RAP2A (ENSG00000125249), RRAS (ENSG00000126458), RAP1B (ENSG00000127314), RASL11B (ENSG00000128045), KRAS (ENSG00000133703), RRAS2 (ENSG00000133818), RERG (ENSG00000134533), REM2 (ENSG00000139890), RIT1 (ENSG00000143622), RALB (ENSG00000144118), RIT2 (ENSG00000152214), MRAS (ENSG00000158186), DIRAS3 (ENSG00000162595), GEM (ENSG00000164949), DIRAS2 (ENSG00000165023), RRAD (ENSG00000166592), RHEBL1 (ENSG00000167550), NKIRAS2 (ENSG00000168256), HRAS (ENSG00000174775), DIRAS1 (ENSG00000176490), RAP2B (ENSG00000181467), ERAS (ENSG00000187682), NKIRAS1 (ENSG00000197885), NRAS (ENSG00000213281), RASL10B (ENSG00000270885)
Protein
Protein identifiers
GTP-binding protein Rheb — Q15382 (reviewed: Q15382)
Alternative names: Ras homolog enriched in brain
All UniProt accessions (5): Q15382, A0A090N900, C9J469, C9J931, F8WBL3
UniProt curated annotations — full annotation on UniProt →
Function. Small GTPase that acts as an allosteric activator of the canonical mTORC1 complex, an evolutionarily conserved central nutrient sensor that stimulates anabolic reactions and macromolecule biosynthesis to promote cellular biomass generation and growth. In response to nutrients, growth factors or amino acids, specifically activates the protein kinase activity of MTOR, the catalytic component of the mTORC1 complex: acts by causing a conformational change that allows the alignment of residues in the active site of MTOR, thereby enhancing the phosphorylation of ribosomal protein S6 kinase (RPS6KB1 and RPS6KB2) and EIF4EBP1 (4E-BP1). RHEB is also required for localization of the TSC-TBC complex to lysosomal membranes. In response to starvation, RHEB is inactivated by the TSC-TBC complex, preventing activation of mTORC1. Has low intrinsic GTPase activity.
Subunit / interactions. Associates with the mTORC1 complex (MTOR, MLST8 and RPTOR) in a guanyl nucleotide-independent manner. Interacts with TSC2. Interacts with MCRS1; the interaction maintains RHEB at the lysosome in its active GTP-bound form and prevents its interaction with the mTORC1 complex inhibitor TSC2, ensuring activation of the mTORC1 complex by RHEB. Interacts (when prenylated) with PDE6D; this promotes release from membranes.
Subcellular location. Endomembrane system. Lysosome membrane. Golgi apparatus membrane. Endoplasmic reticulum membrane. Cytoplasm. Cytosol.
Tissue specificity. Ubiquitous. Highest levels observed in skeletal and cardiac muscle.
Post-translational modifications. Farnesylation is important for efficiently activating mTORC1-mediated signaling. Polyubiquitinated in response to amino acid, promoting its interaction with MTOR and mTORC1 activation. Deubiquitination by ATXN3 promotes recruitment of the TSC-TBC complex and RHEB inactivation by TSC2. Monoubiquitinated at Lys-8 by RNF152, promoting its association with the TSC-TBC complex. Deubiquitinated at Lys-8 by USP4, promoting mTORC1 activation. Phosphorylation by MAPKAPK5 impairs GTP-binding and inactivation.
Activity regulation. Alternates between an inactive form bound to GDP and an active form bound to GTP. Inactivated by the TSC-TBC complex via the GTPase activating protein (GAP) domain of TSC2. Autoinhibited by Tyr-35, which constrains the active site conformation, restricting the access of the catalytic Asp-65 to the nucleotide-binding pocket. Specifically inhibited by NR1 (4-bromo-6-(3,4-dichlorophenylthio)-1-(4-(dimethylcarbamoyl)benzyl)-1H-indole-2-carboxylic acid).
Miscellaneous. The conserved catalytic Gln-64 found in other Ras-like GTPases does not seem to be involved in GTP hydrolysis in RHEB.
Similarity. Belongs to the small GTPase superfamily. Rheb family.
RefSeq proteins (1): NP_005605* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001806 | Small_GTPase | Family |
| IPR005225 | Small_GTP-bd | Domain |
| IPR020849 | Small_GTPase_Ras-type | Family |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
Pfam: PF00071
Enzyme classification (BRENDA):
- EC 3.6.5.2 — small monomeric GTPase (BRENDA: 49 organisms, 138 substrates, 55 inhibitors, 5 Km, 1 kcat entries)
Substrate kinetics (BRENDA)
1 substrates with measured Km, best-characterized 1. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| GTP | — | 0 |
Catalyzed reactions (Rhea), 1 shown:
- GTP + H2O = GDP + phosphate + H(+) (RHEA:19669)
UniProt features (73 total): mutagenesis site 26, binding site 24, strand 7, helix 6, modified residue 2, chain 1, propeptide 1, short sequence motif 1, site 1, lipid moiety-binding region 1, cross-link 1, sequence variant 1, sequence conflict 1
Structure
Experimental structures (PDB)
15 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6BSX | X-RAY DIFFRACTION | 1.65 |
| 3T5G | X-RAY DIFFRACTION | 1.7 |
| 1XTQ | X-RAY DIFFRACTION | 2 |
| 3SEA | X-RAY DIFFRACTION | 2 |
| 7BTD | X-RAY DIFFRACTION | 2 |
| 5YXH | X-RAY DIFFRACTION | 2.04 |
| 7BTC | X-RAY DIFFRACTION | 2.1 |
| 6BT0 | X-RAY DIFFRACTION | 2.6 |
| 7BTA | X-RAY DIFFRACTION | 2.6 |
| 1XTR | X-RAY DIFFRACTION | 2.65 |
| 1XTS | X-RAY DIFFRACTION | 2.8 |
| 9ED7 | ELECTRON MICROSCOPY | 3.16 |
| 9ED4 | ELECTRON MICROSCOPY | 3.23 |
| 9ED8 | ELECTRON MICROSCOPY | 3.61 |
| 6BCU | ELECTRON MICROSCOPY | 3.8 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q15382-F1 | 92.93 | 0.85 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 35 (important for autoinhibition of gtpase activity)
Ligand- & substrate-binding residues (24): 20; 20; 20; 21; 21; 32; 32; 33; 35; 38; 38; 119 …
Post-translational modifications (4): 130, 181, 181, 8
Mutagenesis-validated functional residues (26):
| Position | Phenotype |
|---|---|
| 8 | decreased ubiquitination by rnf152. does not affect polyubiquitination in response to amino acids. |
| 15 | partially resistant to inactivation by tsc1-tsc2. |
| 20 | deficient in guanine nucleotide binding. unable to rescue rps6kb1 from inactivation by amino-acid withdrawal. reduces af |
| 35 | increased gtpase activity; insensitive to tsc2 regulation, leading to impaired regulation of mtorc1 signaling. |
| 35 | dominant mutant, which can activate mtorc1 in both gdp- and gtp-bound forms. |
| 38 | slightly impairs signaling through mtorc1, but still binds guanine nucleotides normally. |
| 39 | impairs rps6kb1 activation, but still binds guanine nucleotides normally. slightly reduces interaction with mcrs1. |
| 40 | no effect. |
| 41 | impairs interaction with mtor. impairs signaling through mtorc1, but still binds guanine nucleotides normally. |
| 43 | no effect. |
| 46 | causes slight reduction in rps6kb1 activation. |
| 48 | causes slightly reduced phosphorylation of eif4ebp1. |
| 49 | causes slightly reduced phosphorylation of eif4ebp1. |
| 53 | causes slightly reduced phosphorylation of eif4ebp1. |
| 54 | partially deficient in guanine nucleotide binding. fully impairs eif4ebp1 phosphorylation and rps6kb1 activation. |
| 56 | partially deficient in guanine nucleotide binding. fully impairs eif4ebp1 phosphorylation and rps6kb1 activation. |
| 60 | unstable protein, which cannot load gtp. |
| 60 | deficient in guanine nucleotide binding. unable to rescue rps6kb1 from inactivation by amino-acid withdrawal. significan |
| 60 | unable to bind mg(2+), preventing nucleotide-binding. |
| 64 | has a higher basal gtpase level, however, is still sensitive to tsc2 gap activity. increases affinity for mcrs1. |
| 65 | renders rheb insensitive to tsc2 regulation, leading to impaired regulation of mtorc1 signaling. |
| 109 | decreased ubiquitination in response to amino acids; when associated with r-135, r-151 and r-178. |
| 135 | decreased ubiquitination in response to amino acids; when associated with r-109, r-151 and r-178. |
| 151 | decreased ubiquitination in response to amino acids; when associated with r-109, r-135 and r-178. |
| 178 | decreased ubiquitination in response to amino acids; when associated with r-109, r-135 and r-151. |
Function
Pathways and Gene Ontology
Reactome pathways
7 pathways
| ID | Pathway |
|---|---|
| R-HSA-1632852 | Macroautophagy |
| R-HSA-165159 | MTOR signalling |
| R-HSA-166208 | mTORC1-mediated signalling |
| R-HSA-380972 | Energy dependent regulation of mTOR by LKB1-AMPK |
| R-HSA-5628897 | TP53 Regulates Metabolic Genes |
| R-HSA-8943724 | Regulation of PTEN gene transcription |
| R-HSA-9639288 | Amino acids regulate mTORC1 |
MSigDB gene sets: 316 (showing top):
GSE37336_LY6C_POS_VS_NEG_NAIVE_CD4_TCELL_UP, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_REGULATION_OF_AUTOPHAGY, GOBP_EPITHELIAL_CELL_DEVELOPMENT, GOCC_VACUOLAR_MEMBRANE, STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN, ROVERSI_GLIOMA_COPY_NUMBER_UP, GOBP_POSITIVE_REGULATION_OF_TOR_SIGNALING, GOBP_POSITIVE_REGULATION_OF_GLIAL_CELL_DIFFERENTIATION, GOBP_TYPE_B_PANCREATIC_CELL_DEVELOPMENT, MORF_RAD21, GOBP_NEUROGENESIS, GOBP_REGULATION_OF_NERVOUS_SYSTEM_DEVELOPMENT, GOBP_POSITIVE_REGULATION_OF_NERVOUS_SYSTEM_DEVELOPMENT, GOBP_MACROAUTOPHAGY
GO Biological Process (19): signal transduction (GO:0007165), small GTPase-mediated signal transduction (GO:0007264), response to virus (GO:0009615), regulation of macroautophagy (GO:0016241), cellular response to nutrient levels (GO:0031669), positive regulation of TOR signaling (GO:0032008), oligodendrocyte differentiation (GO:0048709), positive regulation of oligodendrocyte differentiation (GO:0048714), regulation of cell cycle (GO:0051726), negative regulation of cold-induced thermogenesis (GO:0120163), positive regulation of TORC1 signaling (GO:1904263), regulation of type B pancreatic cell development (GO:2000074), autophagosome assembly (GO:0000045), cytoplasmic translation (GO:0002181), negative regulation of autophagy (GO:0010507), regulation of TOR signaling (GO:0032006), TORC1 signaling (GO:0038202), negative regulation of translational initiation (GO:0045947), positive regulation of translational initiation (GO:0045948)
GO Molecular Function (11): magnesium ion binding (GO:0000287), GTPase activity (GO:0003924), GTP binding (GO:0005525), GDP binding (GO:0019003), protein kinase binding (GO:0019901), protein kinase activator activity (GO:0030295), protein serine/threonine kinase activator activity (GO:0043539), nucleotide binding (GO:0000166), protein binding (GO:0005515), hydrolase activity (GO:0016787), metal ion binding (GO:0046872)
GO Cellular Component (15): Golgi membrane (GO:0000139), spliceosomal complex (GO:0005681), lysosomal membrane (GO:0005765), endoplasmic reticulum membrane (GO:0005789), cytosol (GO:0005829), plasma membrane (GO:0005886), endomembrane system (GO:0012505), postsynaptic density (GO:0014069), membrane (GO:0016020), extracellular exosome (GO:0070062), cytoplasm (GO:0005737), lysosome (GO:0005764), endoplasmic reticulum (GO:0005783), Golgi apparatus (GO:0005794), synapse (GO:0045202)
Reactome top-level categories
Rollup of top-6 pathways:
| Category | Pathways |
|---|---|
| MTOR signalling | 2 |
| Autophagy | 1 |
| Signal Transduction | 1 |
| Transcriptional Regulation by TP53 | 1 |
| PTEN Regulation | 1 |
| Cellular response to starvation | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| TOR signaling | 3 |
| cytoplasm | 3 |
| regulation of cellular process | 2 |
| cellular response to stimulus | 2 |
| regulation of autophagy | 2 |
| translational initiation | 2 |
| regulation of translational initiation | 2 |
| guanyl ribonucleotide binding | 2 |
| endomembrane system | 2 |
| intracellular membrane-bounded organelle | 2 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| intracellular signaling cassette | 1 |
| response to other organism | 1 |
| macroautophagy | 1 |
| response to nutrient levels | 1 |
| regulation of TOR signaling | 1 |
| positive regulation of intracellular signal transduction | 1 |
| central nervous system development | 1 |
| glial cell differentiation | 1 |
| positive regulation of glial cell differentiation | 1 |
| oligodendrocyte differentiation | 1 |
| regulation of oligodendrocyte differentiation | 1 |
| cell cycle | 1 |
| negative regulation of multicellular organismal process | 1 |
| cold-induced thermogenesis | 1 |
| regulation of cold-induced thermogenesis | 1 |
| positive regulation of TOR signaling | 1 |
| TORC1 signaling | 1 |
| regulation of TORC1 signaling | 1 |
| type B pancreatic cell development | 1 |
| regulation of cell development | 1 |
| Atg12 activating enzyme activity | 1 |
| protein-phosphatidylethanolamide deconjugating activity | 1 |
| Atg12 conjugating enzyme activity | 1 |
| Atg12 ligase activity | 1 |
| organelle assembly | 1 |
| Atg1/ULK1 kinase complex assembly | 1 |
Protein interactions and networks
STRING
3439 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RHEB | RPTOR | Q8N122 | 998 |
| RHEB | TSC2 | P49815 | 997 |
| RHEB | MTOR | P42345 | 997 |
| RHEB | MLST8 | Q9BVC4 | 984 |
| RHEB | BNIP3 | Q12983 | 981 |
| RHEB | AKT1S1 | Q96B36 | 980 |
| RHEB | TSC1 | Q92574 | 977 |
| RHEB | BNIP3L | O60238 | 967 |
| RHEB | GAPDH | P00354 | 945 |
| RHEB | RRAGC | Q9HB90 | 942 |
| RHEB | RRAGB | Q5VZM2 | 940 |
| RHEB | RRAGA | Q7L523 | 939 |
| RHEB | FKBP8 | Q14318 | 931 |
| RHEB | RRAGD | Q9NQL2 | 928 |
| RHEB | RPS6KB1 | P23443 | 923 |
IntAct
127 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| RELL2 | OXSR1 | psi-mi:“MI:0914”(association) | 0.830 |
| RAC1 | RAP1GDS1 | psi-mi:“MI:0914”(association) | 0.800 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| LAMP2 | RHEB | psi-mi:“MI:0915”(physical association) | 0.670 |
| EIF4EBP1 | MTOR | psi-mi:“MI:0915”(physical association) | 0.660 |
| RHEB | MTOR | psi-mi:“MI:0915”(physical association) | 0.590 |
| MTOR | RHEB | psi-mi:“MI:0915”(physical association) | 0.590 |
| RHEB | TPT1 | psi-mi:“MI:0407”(direct interaction) | 0.560 |
| RHEB | APPBP2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CASP6 | RHEB | psi-mi:“MI:0915”(physical association) | 0.560 |
| RHEB | CCK | psi-mi:“MI:0915”(physical association) | 0.560 |
| RHEB | psi-mi:“MI:0915”(physical association) | 0.560 | |
| RHEB | FGFR3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GRIN2C | RHEB | psi-mi:“MI:0915”(physical association) | 0.560 |
| HIP1 | RHEB | psi-mi:“MI:0915”(physical association) | 0.560 |
| RAN | RHEB | psi-mi:“MI:0915”(physical association) | 0.560 |
| UBQLN1 | RHEB | psi-mi:“MI:0915”(physical association) | 0.560 |
| PRPF40A | RHEB | psi-mi:“MI:0915”(physical association) | 0.560 |
| CCK | RHEB | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (173): PLD1 (Affinity Capture-Western), MTOR (Affinity Capture-Western), RHEB (Reconstituted Complex), RHEB (Biochemical Activity), PLD1 (Biochemical Activity), RHEB (Affinity Capture-Western), RHEB (Affinity Capture-MS), RHEB (Affinity Capture-MS), RHEB (Affinity Capture-MS), RHEB (Co-fractionation), RHEB (Co-fractionation), RHEB (Two-hybrid), RPTOR (Co-localization), RHEB (Affinity Capture-MS), RHEB (Affinity Capture-MS)
ESM2 similar proteins: A1XQR9, B5FYY5, F1QGW6, F6RQL9, O35900, O93377, P41091, P61599, P61600, P62308, P62309, P62310, P62311, P81795, Q09028, Q0VC00, Q13126, Q13888, Q15382, Q17QI2, Q2KHU8, Q2PFM2, Q2TBV5, Q32PE9, Q3MHL3, Q3ZBL0, Q4KLK9, Q58ED9, Q5M7K4, Q5R797, Q5RF92, Q5ZJQ7, Q60972, Q62639, Q6INH0, Q6P1K8, Q6P3H7, Q6P632, Q7ZUG0, Q7ZXR3
Diamond homologs: A1DZY4, A6QP66, A8NU18, C4YKT4, O08989, O14807, O35929, O88667, O93856, O94363, P01119, P03967, P08645, P08647, P0CY32, P10114, P10536, P11233, P11234, P15064, P17609, P22124, P22126, P22278, P22279, P22280, P28775, P32254, P36860, P36863, P48555, P59279, P61105, P61225, P61226, P61227, P62070, P62071, P63320, P63321
SIGNOR signaling
13 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| TSC2 | “down-regulates activity” | RHEB | “gtpase-activating protein” |
| RHEB | “up-regulates activity” | MTOR | binding |
| BNIP3 | down-regulates | RHEB | binding |
| RHEB | down-regulates | FKBP8 | binding |
| TSC1 | “down-regulates activity” | RHEB | binding |
| RHEB | up-regulates | PLD1 | binding |
| RHEB | “up-regulates activity” | mTORC1 | |
| RHEB | “down-regulates activity” | FKBP8 | “gtpase-activating protein” |
| TSC | “down-regulates activity” | RHEB | “gtpase-activating protein” |
| MAPKAPK5 | “down-regulates activity” | RHEB | phosphorylation |
| RHEB | “down-regulates activity” | EIF2AK3 | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 110 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Constitutive Signaling by Aberrant PI3K in Cancer | 6 | 10.6× | 3e-03 |
| PIP3 activates AKT signaling | 8 | 7.4× | 3e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| positive regulation of stress fiber assembly | 5 | 15.9× | 7e-03 |
| cellular response to amino acid stimulus | 5 | 15.6× | 7e-03 |
| positive regulation of ERK1 and ERK2 cascade | 8 | 7.0× | 7e-03 |
| positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction | 8 | 6.4× | 7e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
34 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 6 |
| Likely pathogenic | 1 |
| Uncertain significance | 16 |
| Likely benign | 1 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (7)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1068862 | NC_000007.13:g.(?150642443)(151385353_?)del | Pathogenic |
| 1702651 | NM_005614.4(RHEB):c.104A>C (p.Tyr35Ser) | Pathogenic |
| 3238630 | NM_005614.4(RHEB):c.104_105delinsTA (p.Tyr35Leu) | Pathogenic |
| 376516 | NM_005614.4(RHEB):c.104A>G (p.Tyr35Cys) | Pathogenic |
| 4077173 | NM_005614.4(RHEB):c.110C>T (p.Pro37Leu) | Pathogenic |
| 4088138 | NM_005614.4(RHEB):c.202T>C (p.Ser68Pro) | Pathogenic |
| 545666 | NM_005614.4(RHEB):c.119A>T (p.Glu40Val) | Likely pathogenic |
SpliceAI
0 predictions. Top by Δscore:
AlphaMissense
1209 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 7:151471414:C:A | K120N | 1.000 |
| 7:151471414:C:G | K120N | 1.000 |
| 7:151484750:T:C | D60G | 1.000 |
| 7:151490974:A:C | F31L | 1.000 |
| 7:151490974:A:T | F31L | 1.000 |
| 7:151490976:A:G | F31L | 1.000 |
| 7:151519475:C:G | G13R | 1.000 |
| 7:151470584:G:T | A150D | 0.999 |
| 7:151470621:C:G | A138P | 0.999 |
| 7:151470633:C:A | G134W | 0.999 |
| 7:151471406:A:G | L123P | 0.999 |
| 7:151471409:T:G | D122A | 0.999 |
| 7:151471416:T:C | K120E | 0.999 |
| 7:151471421:C:T | G118E | 0.999 |
| 7:151471422:C:A | G118W | 0.999 |
| 7:151471424:A:T | V117D | 0.999 |
| 7:151471605:A:C | S92R | 0.999 |
| 7:151471605:A:T | S92R | 0.999 |
| 7:151477334:T:G | S92R | 0.999 |
| 7:151477343:A:G | S89P | 0.999 |
| 7:151477352:A:G | S86P | 0.999 |
| 7:151484741:C:T | G63E | 0.999 |
| 7:151484742:C:A | G63W | 0.999 |
| 7:151484742:C:G | G63R | 0.999 |
| 7:151484742:C:T | G63R | 0.999 |
| 7:151484744:G:T | A62D | 0.999 |
| 7:151484749:G:C | D60E | 0.999 |
| 7:151484749:G:T | D60E | 0.999 |
| 7:151484750:T:A | D60V | 0.999 |
| 7:151484750:T:G | D60A | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000119426 (7:151476520 C>A), RS1000133483 (7:151495701 A>C), RS1000136631 (7:151485754 T>G), RS1000172151 (7:151476825 A>C), RS1000215601 (7:151510723 A>G), RS1000290831 (7:151521360 G>A,T), RS1000308691 (7:151470268 T>C,G), RS1000319583 (7:151467773 G>A), RS1000350719 (7:151467476 C>G), RS1000398515 (7:151482749 A>G), RS1000429165 (7:151515910 G>T), RS1000466496 (7:151486074 C>G,T), RS1000485867 (7:151495445 G>A), RS1000675200 (7:151521566 G>A,C), RS1000687256 (7:151497532 C>T)
Disease associations
OMIM: gene MIM:601293 | disease phenotypes: MIM:607341
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| complex neurodevelopmental disorder | Limited | Autosomal dominant |
Mondo (5): long QT syndrome (MONDO:0002442), intellectual disability (MONDO:0001071), isolated focal cortical dysplasia type II (MONDO:0011818), hemimegalencephaly (MONDO:0020492), complex neurodevelopmental disorder (MONDO:0100038)
Orphanet (3): Isolated focal cortical dysplasia type II (Orphanet:268994), Hemimegalencephaly (Orphanet:99802), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST005351_5 | Carboplatin disposition in epthelial ovarian cancer | 6.000000e-06 |
| GCST009391_269 | Metabolite levels | 8.000000e-06 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0010427 | triacylglycerol 54:9 measurement |
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D065705 | Hemimegalencephaly | C05.660.207.536.500; C10.500.507.400.249.500; C16.131.621.207.532.500; C16.131.666.507.400.249.500 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D008133 | Long QT Syndrome | C14.280.067.565; C14.280.123.625; C16.131.240.400.715; C23.550.073.547 |
| C537067 | Focal cortical dysplasia of Taylor (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL3108656 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
Binding affinities (BindingDB)
36 measured of 37 human assays (37 total across all organisms); most potent 36 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value | Patent |
|---|---|---|---|
| trans-(1R,3R)-3-[(5,6-dichloro-2-pyridin-4-yl-1H-benzimidazol-4-yl)oxymethyl]cyclohexan-1-ol | IC50 | 51500 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| cis-(1R,3S)-3-[(5,6-dichloro-2-pyridin-4-yl-1H-benzimidazol-4-yl)oxymethyl]cyclohexan-1-ol | IC50 | 51500 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| 1-(6-chloro-4-phenoxy-1H-indol-2-yl)-2-trimethylsilylethanol | IC50 | 55000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| 1-(6-chloro-4-phenoxy-1H-indol-2-yl)ethanol | IC50 | 55000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| 1-(4-bromo-6-phenoxy-1H-indol-2-yl)ethanol | IC50 | 55000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| 1-[5,6-dichloro-4-(cyclohexylmethoxy)-1H-benzimidazol-2-yl]ethane-1,2-diol | IC50 | 55000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| N-[(1R,2S)-2-[[5,6-dichloro-2-(hydroxymethyl)-1H-benzimidazol-4-yl]oxymethyl]cyclohexyl]acetamide | IC50 | 55000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| cis-(1S,2R)-2-[[5,6-dichloro-2-(hydroxymethyl)-1H-benzimidazol-4-yl]oxymethyl]cyclohexan-1-ol | IC50 | 55000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| cis-(1S,2R)-2-[[5,6-dichloro-2-(hydroxymethyl)-1-(2H-tetrazol-5-ylmethyl)benzimidazol-4-yl]oxymethyl]cyclohexan-1-ol | IC50 | 55000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| 3-[[5,6-dichloro-2-(hydroxymethyl)-1H-benzimidazol-4-yl]oxymethyl]cyclohexan-1-ol | IC50 | 55000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| [4-[[(1S,2R)-2-aminocyclohexyl]methoxy]-5,6-dichloro-1H-benzimidazol-2-yl]methanol | IC50 | 200000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| 2-[[6-chloro-2-(hydroxymethyl)-1H-benzimidazol-4-yl]oxymethyl]cyclohexan-1-ol | IC50 | 200000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| [5,6-dichloro-4-(oxolan-2-ylmethoxy)-1H-benzimidazol-2-yl]methanol | IC50 | 200000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| 6-[[5,6-dichloro-2-(hydroxymethyl)-1H-benzimidazol-4-yl]oxymethyl]piperidin-2-one | IC50 | 200000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| 4-bromo-6-(3,4-dichlorophenyl)sulfanyl-N-[[(2R)-1-methylpyrrolidin-2-yl]methyl]-1H-indole-2-carboxamide | IC50 | 550000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| 4-bromo-6-(3,4-dichlorophenyl)sulfanyl-N-[[(2S)-1-methylpyrrolidin-2-yl]methyl]-1H-indole-2-carboxamide | IC50 | 550000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| 1-[6-chloro-4-(4-chlorophenyl)sulfanyl-1H-indole-2-carbonyl]piperidine-3-carboxamide | IC50 | 550000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| N-[(1-benzylpyrrolidin-3-yl)methyl]-6-chloro-4-(4-chlorophenyl)sulfanyl-1H-indole-2-carboxamide | IC50 | 550000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| 6-chloro-4-(4-chlorophenyl)sulfanyl-N-[(5-oxopyrrolidin-2-yl)methyl]-1H-indole-2-carboxamide | IC50 | 550000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| (6-phenoxy-4-piperidin-3-yl-1H-indol-2-yl)methanol | IC50 | 550000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| [6-(benzenesulfinyl)-4-bromo-1H-indol-2-yl]methanol | IC50 | 550000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| 4-(2-chlorophenyl)sulfinyl-1H-indole | IC50 | 550000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| 4-(3-chlorophenyl)sulfinyl-1H-indole | IC50 | 550000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| 4-(5,6-dichloro-1H-benzimidazol-2-yl)-N-[[(2S)-1-methylpyrrolidin-2-yl]methyl]benzamide | IC50 | 550000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| 4-(5,6-dichloro-1H-benzimidazol-2-yl)-N-[[(2R)-1-methylpyrrolidin-2-yl]methyl]benzamide | IC50 | 550000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| 2-[[5,6-dichloro-2-(hydroxymethyl)-1H-benzimidazol-4-yl]oxymethyl]cyclopentan-1-ol | IC50 | 550000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| 4-[[5,6-dichloro-2-(hydroxymethyl)-1H-benzimidazol-4-yl]oxymethyl]oxolan-3-ol | IC50 | 550000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| (3R,4S)-3-[[5,6-dichloro-2-(hydroxymethyl)-1H-benzimidazol-4-yl]oxymethyl]piperidin-4-ol | IC50 | 550000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| (3R,4R)-3-[[5,6-dichloro-2-(hydroxymethyl)-1H-benzimidazol-4-yl]oxymethyl]piperidin-4-ol | IC50 | 550000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| trans-(1R,2R)-2-[[5,6-dichloro-2-(hydroxymethyl)-1H-benzimidazol-4-yl]oxymethyl]cyclohexan-1-ol | IC50 | 550000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| cis-(1S,2R)-2-[[5,6-dichloro-2-(hydroxymethyl)-1-(1H-1,2,4-triazol-5-ylmethyl)benzimidazol-4-yl]oxymethyl]cyclohexan-1-ol | IC50 | 550000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| [5,6-dichloro-4-(oxan-2-ylmethoxy)-1H-benzimidazol-2-yl]methanol | IC50 | 550000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| 5-[[5,6-dichloro-2-(hydroxymethyl)-1H-benzimidazol-4-yl]oxymethyl]pyrrolidin-2-one | IC50 | 550000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| [5,6-dichloro-4-(pyrrolidin-3-ylmethoxy)-1H-benzimidazol-2-yl]methanol | IC50 | 550000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| [5,6-dichloro-4-(piperidin-2-ylmethoxy)-1H-benzimidazol-2-yl]methanol | IC50 | 550000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
| [5,6-dichloro-4-(pyrrolidin-2-ylmethoxy)-1H-benzimidazol-2-yl]methanol | IC50 | 550000 nM | US-11339144: Heteroaryl Rheb inhibitors and uses thereof |
CTD chemical–gene interactions
61 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | increases expression, affects expression, decreases expression | 4 |
| sodium arsenite | decreases expression, increases abundance, increases expression | 4 |
| Tobacco Smoke Pollution | affects expression, increases expression | 3 |
| Valproic Acid | affects expression, increases expression | 3 |
| Benzo(a)pyrene | affects methylation | 2 |
| Cadmium | decreases expression, increases abundance, increases expression | 2 |
| Zinc | decreases expression | 2 |
| Cadmium Chloride | decreases expression, increases abundance, increases expression | 2 |
| bisphenol F | increases expression | 1 |
| moringin | affects cotreatment, increases expression | 1 |
| 2,4,6-tribromophenol | decreases expression | 1 |
| methylmercuric chloride | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| decabromobiphenyl ether | decreases expression | 1 |
| arsenite | affects binding, increases reaction | 1 |
| cobaltous chloride | decreases expression, increases expression | 1 |
| tetrabromobisphenol A | decreases expression | 1 |
| ochratoxin A | affects binding | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| isobutyl alcohol | affects cotreatment, increases abundance, increases expression | 1 |
| ochratoxin B | affects binding | 1 |
| chloropicrin | affects expression | 1 |
| lonafarnib | decreases activity, increases response to substance | 1 |
| tipifarnib | decreases activity, increases response to substance | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | increases expression, affects cotreatment | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 1 |
| (4-amino-1,4-dihydro-3-(2-pyridyl)-5-thioxo-1,2,4-triazole)copper(II) | increases expression | 1 |
| pentabrominated diphenyl ether 100 | decreases expression | 1 |
| hexabrominated diphenyl ether 153 | decreases expression | 1 |
| bisphenol S | increases expression | 1 |
ChEMBL screening assays
4 unique, capped per target: 4 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3112177 | Binding | Inhibition of RHEB in human HeLa cells assessed as decrease in phospho-S6 protein level at 100 uM after 4 hrs by Western blotting analysis | Bisphenol A binds to Ras proteins and competes with guanine nucleotide exchange: implications for GTPase-selective antagonists. — J Med Chem |
Clinical trials (associated diseases)
267 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT02513940 | PHASE4 | COMPLETED | Influence of Testosterone Administration on Drug-Induced QT Interval Prolongation and Torsades de Pointes |
| NCT03834883 | PHASE4 | COMPLETED | Reducing the Risk of Drug-Induced QT Interval Lengthening in Women |
| NCT04169100 | PHASE4 | UNKNOWN | Novel Form of Acquired Long QT Syndrome |
| NCT04675788 | PHASE4 | COMPLETED | Novel Approaches for Minimizing Drug-Induced QT Interval Lengthening |
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT02270736 | PHASE3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT01648205 | PHASE2 | COMPLETED | Long-term Efficacy Study of Sodium Channel Blocker in LQT3 Patients |
| NCT02412709 | PHASE2 | UNKNOWN | Long QT Syndrome Screening in Newborns |
| NCT04581408 | PHASE2 | COMPLETED | Mutation-specific Therapy for the Long QT Syndrome |
| NCT02304302 | PHASE2 | COMPLETED | Down Syndrome Memantine Follow-up Study |
| NCT03862950 | PHASE2 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome (Met) |
| NCT04529226 | PHASE2 | UNKNOWN | Study to Compare Clozapine vs Treatment as Usual in People With Intellectual Disability & Treatment-resistant Psychosis |
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| NCT02365532 | PHASE1 | COMPLETED | Effect of Oral GS-6615 on Dofetilide-Induced QT Prolongation, Safety, and Tolerability in Healthy Adults |
| NCT02412098 | PHASE1 | COMPLETED | Pharmacokinetics of Eleclazine in Adults With Normal and Impaired Hepatic Function |
| NCT02441829 | PHASE1 | COMPLETED | Pharmacokinetics of Eleclazine in Adults With Normal and Impaired Renal Function |
| NCT05759962 | PHASE1 | COMPLETED | Phase 1 Study of LQT-1213 in Healthy Adults |
| NCT05273320 | PHASE1 | COMPLETED | Clinical Trial of Nabilone for Aggression in Adults With Intellectual and Developmental Disabilities |
| NCT05301361 | PHASE1 | ENROLLING_BY_INVITATION | Sensitivity of the NIH Toolbox to Stimulant Treatment in Intellectual Disabilities |
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| NCT07531940 | PHASE1 | NOT_YET_RECRUITING | Escalating Doses of Memantine in Down Syndrome (MEDS-123) |
| NCT06310681 | Not specified | COMPLETED | Pilot Testing of a Co-adapted Group Programme for Parents/Carers of Children With Complex Neurodisability |
| NCT07303049 | Not specified | NOT_YET_RECRUITING | Cognitive Benefit of Intensive Rehabilitation Using Rhythmic Music Training in Children With Complex Neurodevelopmental Disorder |
| NCT05906732 | PHASE1/PHASE2 | TERMINATED | Study of LQT-1213 on QTc-induced Prolongation in Healthy Adult Subjects (Part1) and on Congenital Long QT in Patients Diagnosed With Type 2 or 3 Long QT Syndrome (Part 2). |
| NCT00005176 | Not specified | COMPLETED | Long QT Syndrome-Population Genetics and Cardiac Studies |
| NCT00005250 | Not specified | COMPLETED | Linkage Study of Long QT Syndrome In An Amish Kindred |
| NCT00005367 | Not specified | COMPLETED | Epidemiology of Long QTand Asian Sudden Death in Sleep |
| NCT00221832 | Not specified | UNKNOWN | Molecular Genetic Screening and Identification of Congenital Arrhythmogenic Diseases |
| NCT00292032 | Not specified | COMPLETED | Registry of Unexplained Cardiac Arrest |
| NCT00335036 | Not specified | TERMINATED | Pediatric Lead Extractability and Survival Evaluation (PLEASE) |
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| NCT00488254 | Not specified | COMPLETED | The Long QT Syndrome in Pregnancy |
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| NCT01705925 | Not specified | COMPLETED | Multicenter Evaluation of Children and Young Adults With Genotype Positive Long QT Syndrome |
Related Atlas pages
- Associated diseases: complex neurodevelopmental disorder
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): complex neurodevelopmental disorder, hemimegalencephaly, intellectual disability, isolated focal cortical dysplasia type II, long QT syndrome