RILP
gene geneOn this page
Also known as FLJ31193
Summary
RILP (Rab interacting lysosomal protein, HGNC:30266) is a protein-coding gene on chromosome 17p13.3, encoding Rab-interacting lysosomal protein (Q96NA2). Rab effector playing a role in late endocytic transport to degradative compartments.
This gene encodes a lysosomal protein that interacts with RAB7, a small GTPase that controls transport to endocytic degradative compartments. Studies using mutant forms of the two proteins suggest that this protein represents a downstream effector for RAB7, and both proteins act together in the regulation of late endocytic traffic. A unique region of this protein has also been shown to be involved in the regulation of lysosomal morphology.
Source: NCBI Gene 83547 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 64 total
- MANE Select transcript:
NM_031430
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:30266 |
| Approved symbol | RILP |
| Name | Rab interacting lysosomal protein |
| Location | 17p13.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ31193 |
| Ensembl gene | ENSG00000167705 |
| Ensembl biotype | protein_coding |
| OMIM | 607848 |
| Entrez | 83547 |
Gene structure
Transcript identifiers
Ensembl transcripts: 11 — 9 protein_coding, 2 retained_intron
ENST00000301336, ENST00000570858, ENST00000573398, ENST00000574810, ENST00000898468, ENST00000898469, ENST00000898470, ENST00000898471, ENST00000931214, ENST00000946792, ENST00000946793
RefSeq mRNA: 1 — MANE Select: NM_031430
NM_031430
CCDS: CCDS11009
Canonical transcript exons
ENST00000301336 — 8 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001198710 | 1648799 | 1649044 |
| ENSE00001198713 | 1649200 | 1649306 |
| ENSE00001198717 | 1649412 | 1649505 |
| ENSE00001307433 | 1646150 | 1646619 |
| ENSE00001312933 | 1649577 | 1649866 |
| ENSE00003590495 | 1646906 | 1646989 |
| ENSE00003596432 | 1647835 | 1647957 |
| ENSE00003690521 | 1648350 | 1648495 |
Expression profiles
Bgee: expression breadth ubiquitous, 135 present calls, max score 97.87.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 8.6203 / max 143.3783, expressed in 1662 samples.
FANTOM5 promoters (9 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 163759 | 3.6598 | 1349 |
| 163763 | 1.5084 | 371 |
| 163760 | 1.0293 | 598 |
| 163767 | 0.6591 | 247 |
| 163764 | 0.5697 | 195 |
| 163761 | 0.5361 | 232 |
| 163762 | 0.4188 | 176 |
| 163766 | 0.1485 | 51 |
| 163765 | 0.0904 | 45 |
Top tissues by expression
135 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| apex of heart | UBERON:0002098 | 97.87 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 95.02 | gold quality |
| heart left ventricle | UBERON:0002084 | 94.83 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 93.36 | gold quality |
| gastrocnemius | UBERON:0001388 | 92.72 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 92.44 | gold quality |
| muscle of leg | UBERON:0001383 | 92.33 | gold quality |
| thyroid gland | UBERON:0002046 | 92.00 | gold quality |
| blood | UBERON:0000178 | 91.69 | gold quality |
| right atrium auricular region | UBERON:0006631 | 91.67 | gold quality |
| heart | UBERON:0000948 | 91.47 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 91.30 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 90.84 | gold quality |
| right lobe of liver | UBERON:0001114 | 90.47 | gold quality |
| duodenum | UBERON:0002114 | 90.18 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 88.60 | gold quality |
| liver | UBERON:0002107 | 88.33 | gold quality |
| muscle tissue | UBERON:0002385 | 88.11 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 88.06 | gold quality |
| right adrenal gland | UBERON:0001233 | 87.95 | gold quality |
| transverse colon | UBERON:0001157 | 87.58 | gold quality |
| left adrenal gland | UBERON:0001234 | 87.50 | gold quality |
| right lung | UBERON:0002167 | 87.00 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 86.59 | gold quality |
| adipose tissue | UBERON:0001013 | 86.56 | gold quality |
| omental fat pad | UBERON:0010414 | 86.53 | gold quality |
| monocyte | CL:0000576 | 86.38 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 86.21 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 86.21 | gold quality |
| spleen | UBERON:0002106 | 86.19 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 12.03 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
12 targeting RILP, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6758-5P | 100.00 | 66.21 | 1470 |
| HSA-MIR-6856-5P | 100.00 | 65.47 | 1298 |
| HSA-MIR-556-3P | 99.74 | 68.75 | 1203 |
| HSA-MIR-7112-5P | 99.59 | 65.76 | 104 |
| HSA-MIR-223-5P | 99.24 | 68.82 | 1206 |
| HSA-MIR-6791-5P | 99.16 | 65.92 | 1844 |
| HSA-MIR-1972 | 97.67 | 67.38 | 1172 |
| HSA-MIR-490-5P | 96.75 | 65.81 | 661 |
| HSA-MIR-6726-5P | 95.97 | 63.72 | 841 |
| HSA-MIR-920 | 95.97 | 63.95 | 811 |
| HSA-MIR-4300 | 95.85 | 64.56 | 1003 |
| HSA-MIR-5591-5P | 95.85 | 64.76 | 1002 |
Literature-anchored findings (GeneRIF, showing 20)
- Unique region in RILP responsible for its specific role in regulating lysosomal morphology as well as in its interaction with Rab7 and Rab34. (PMID:14668488)
- The crystal structure of Rab7-GTP in complex with the Rab7 binding domain of RILP reveals that Rab7 interacts with RILP specifically via two distinct areas. (PMID:15933719)
- The data together indicate that RILP, as already demonstrated for several other Rab effector proteins, is capable of self-association, thus probably forming a homo-dimer. (PMID:15996637)
- RILP indeed prenylated, while phosphorylation analysis showed that the two protein kinase A sites are phosphorylated. (PMID:16417580)
- Hence, RILPsv provides an extra dimension to the control of vesicle fusion and transport by the small GTPase Rab7. (PMID:16631113)
- we have isolated, using the yeast two-hybrid system, the EAP30/SNF8/VPS22 subunit of the ESCRT-II complex as a RILP interacting protein. (PMID:16857164)
- These results establish that RILP is required for biogenesis of multivesicular endosomes and degradative trafficking of EGFRs but not for trafficking of transferrin receptors through early endosomes. (PMID:17959629)
- REST/NRSF, dynactin p150(Glued), huntingtin, HAP1, and RILP form a complex involved in the translocation of REST/NRSF into the nucleus and HAP1 controls REST/NRSF cellular localization in neurons (PMID:18922795)
- Results describe how ORP1L contacts VAP to control Rab7-RILP-p150 Glued and late endosome positioning. (PMID:19564404)
- RILP directly and concomitantly binds the tethering HOPS complex and the p150(Glued) subunit of the dynein motor. ORP1L then functions as a cholesterol-sensing switch controlling RILP-HOPS-p150(Glued) interactions. (PMID:23729732)
- RILP regulates the activity of the V-ATPase through its interaction with V1G1. (PMID:24762812)
- VPS41 subunit of HOPS complex was defined to be the major partner for interacting with RILP. (PMID:25445562)
- RILP regulates vacuolar ATPase through interaction with the V1G1 subunit (PMID:26180254)
- RILP suppresses the invasion of breast cancer cells by interacting with RalGDS to inhibit its guanine nucleotide exchange factor activity for RalA. (PMID:26469971)
- Hepatitis C virus (HCV) modifies cellular trafficking by cleaving Rab interacting lysosomal protein (RILP), which serves to redirect ras-related protein Rab-7 (Rab7)-containing vesicles to a kinesin-dependent trafficking mode promoting virion secretion. (PMID:27791088)
- structural and biochemical investigation of the Rab7-ORP1L interaction revealed architecture that leaves the canonical effector-interacting switch regions available for RILP binding and thus allows formation of the ORP1L-Rab7-RILP tripartite complex. (PMID:30012887)
- Caspase-1 regulates cellular trafficking via cleavage of the Rab7 adaptor protein RILP in cultured neoplastic epithelial cells has been reported. (PMID:30100068)
- Methylation of RILP in lung cancer promotes tumor cell proliferation and invasion. (PMID:33128214)
- RILP inhibits proliferation, migration, and invasion of PC3 prostate cancer cells. (PMID:35981451)
- RILP Induces Cholesterol Accumulation in Lysosomes by Inhibiting Endoplasmic Reticulum-Endolysosome Interactions. (PMID:39195203)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | rilp | ENSDARG00000074660 |
| mus_musculus | Rilp | ENSMUSG00000038195 |
| rattus_norvegicus | Rilp | ENSRNOG00000003784 |
| drosophila_melanogaster | Rilpl | FBGN0024985 |
| caenorhabditis_elegans | WBGENE00007860 |
Paralogs (4): DZIP1 (ENSG00000134874), RILPL2 (ENSG00000150977), DZIP1L (ENSG00000158163), RILPL1 (ENSG00000188026)
Protein
Protein identifiers
Rab-interacting lysosomal protein — Q96NA2 (reviewed: Q96NA2)
All UniProt accessions (2): Q96NA2, I3L1U0
UniProt curated annotations — full annotation on UniProt →
Function. Rab effector playing a role in late endocytic transport to degradative compartments. Involved in the regulation of lysosomal morphology and distribution. Induces recruitment of dynein-dynactin motor complexes to Rab7A-containing late endosome and lysosome compartments. Promotes centripetal migration of phagosomes and the fusion of phagosomes with the late endosomes and lysosomes.
Subunit / interactions. Homodimer. Interacts with RAB7A. Interacts with RAB34. Identified in a complex with MREG and DCTN1; interacts directly with MREG. Interacts with CLN3. Interacts with FLCN; the interaction is direct and promotes association between RILP and RAB34.
Subcellular location. Late endosome membrane. Lysosome membrane. Cytoplasmic vesicle. Phagosome membrane.
Tissue specificity. Ubiquitous. Strongly expressed in fetal heart, heart, stomach, spleen, adrenal gland, thyroid gland, salivary gland, fetal liver, liver and lung. Poorly expressed in brain.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q96NA2-1 | 1 | yes |
| Q96NA2-2 | 2 |
RefSeq proteins (1): NP_113618* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR021563 | RILP_dimer | Domain |
| IPR034743 | RH1 | Domain |
| IPR034744 | RH2 | Domain |
| IPR051241 | DZIP_RILPL | Family |
Pfam: PF09744, PF11461
UniProt features (27 total): mutagenesis site 8, modified residue 3, region of interest 3, domain 2, splice variant 2, sequence variant 2, helix 2, compositionally biased region 2, chain 1, sequence conflict 1, coiled-coil region 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 1YHN | X-RAY DIFFRACTION | 3 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96NA2-F1 | 71.72 | 0.38 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (3): 314, 315, 308
Mutagenesis-validated functional residues (8):
| Position | Phenotype |
|---|---|
| 248 | strongly reduces dimerization and localization to late endosomal/lysosomal compartments. |
| 251 | abolishes dimerization, interaction with rab7a and localization to late endosomal/lysosomal compartments. |
| 252 | abolishes interaction with rab7a and localization to late endosomal/lysosomal compartments. |
| 255 | abolishes dimerization, interaction with rab7a and localization to late endosomal/lysosomal compartments. |
| 258 | reduces dimerization, interaction with rab7a and localization to late endosomal/lysosomal compartments. |
| 304 | abolishes interaction with rab7a and localization to late endosomal/lysosomal compartments. |
| 305 | abolishes interaction with rab7a and localization to late endosomal/lysosomal compartments. |
| 306 | abolishes interaction with rab7a and localization to late endosomal/lysosomal compartments. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-2132295 | MHC class II antigen presentation |
MSigDB gene sets: 108 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_COLON_TUMORAL_MACROPHAGE_DN, GOBP_LYSOSOMAL_TRANSPORT, GOBP_ENDOSOME_ORGANIZATION, REACTOME_ADAPTIVE_IMMUNE_SYSTEM, GOCC_VACUOLAR_MEMBRANE, GOBP_VESICLE_ORGANIZATION, GOBP_ENDOSOME_TO_LYSOSOME_TRANSPORT, GOBP_POSITIVE_REGULATION_OF_PROTEIN_CATABOLIC_PROCESS, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, GOBP_VACUOLAR_TRANSPORT, TGACCTY_ERR1_Q2, GOBP_VESICLE_MEDIATED_TRANSPORT, GOMF_GTPASE_BINDING, GOBP_NEGATIVE_REGULATION_OF_PROTEIN_CATABOLIC_PROCESS, GOCC_MICROTUBULE_ORGANIZING_CENTER
GO Biological Process (8): endosome to lysosome transport (GO:0008333), protein transport (GO:0015031), endosome transport via multivesicular body sorting pathway (GO:0032509), negative regulation of protein catabolic process (GO:0042177), early endosome to late endosome transport (GO:0045022), positive regulation of protein catabolic process (GO:0045732), cilium assembly (GO:0060271), intralumenal vesicle formation (GO:0070676)
GO Molecular Function (4): small GTPase binding (GO:0031267), protein dimerization activity (GO:0046983), dynein light intermediate chain binding (GO:0051959), protein binding (GO:0005515)
GO Cellular Component (11): cytoplasm (GO:0005737), lysosome (GO:0005764), lysosomal membrane (GO:0005765), late endosome (GO:0005770), phagocytic vesicle membrane (GO:0030670), late endosome membrane (GO:0031902), protein-containing complex (GO:0032991), ciliary basal body (GO:0036064), endosome (GO:0005768), membrane (GO:0016020), cytoplasmic vesicle (GO:0031410)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Adaptive Immune System | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| protein catabolic process | 2 |
| regulation of protein catabolic process | 2 |
| cytoplasm | 2 |
| endosome membrane | 2 |
| protein binding | 2 |
| cellular anatomical structure | 2 |
| lysosomal transport | 1 |
| intercellular transport | 1 |
| vesicle-mediated transport | 1 |
| transport | 1 |
| intracellular protein localization | 1 |
| establishment of protein localization | 1 |
| endosomal transport | 1 |
| multivesicular body sorting pathway | 1 |
| negative regulation of catabolic process | 1 |
| negative regulation of protein metabolic process | 1 |
| vesicle-mediated transport between endosomal compartments | 1 |
| positive regulation of catabolic process | 1 |
| positive regulation of protein metabolic process | 1 |
| axoneme assembly | 1 |
| intraciliary transport involved in cilium assembly | 1 |
| cilium organization | 1 |
| protein localization to cilium | 1 |
| organelle assembly | 1 |
| trans-Golgi to periciliary membrane compartment transport | 1 |
| plasma membrane bounded cell projection assembly | 1 |
| ciliary transition zone assembly | 1 |
| vesicle budding from membrane | 1 |
| endosome organization | 1 |
| GTPase binding | 1 |
| binding | 1 |
| intracellular anatomical structure | 1 |
| lytic vacuole | 1 |
| lysosome | 1 |
| lytic vacuole membrane | 1 |
| endosome | 1 |
| endocytic vesicle membrane | 1 |
| phagocytic vesicle | 1 |
| late endosome | 1 |
| cellular_component | 1 |
Protein interactions and networks
STRING
743 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RILP | RAB34 | Q9BZG1 | 922 |
| RILP | RAB7A | P51149 | 788 |
| RILP | DCTN1 | Q14203 | 765 |
| RILP | OSBPL1A | Q9BXW6 | 703 |
| RILP | RDX | P35241 | 689 |
| RILP | MSN | P26038 | 674 |
| RILP | RAB36 | O95755 | 656 |
| RILP | RILPL2 | Q969X0 | 623 |
| RILP | FYCO1 | Q9BQS8 | 619 |
| RILP | EZR | P15311 | 588 |
| RILP | MREG | Q8N565 | 587 |
| RILP | ATP6V1G1 | O75348 | 573 |
| RILP | SNAP29 | O95721 | 557 |
| RILP | VAMP8 | Q9BV40 | 552 |
| RILP | ARL8B | Q9NVJ2 | 524 |
IntAct
44 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| RILP | RAB7A | psi-mi:“MI:0407”(direct interaction) | 0.930 |
| RILP | RAB7A | psi-mi:“MI:0915”(physical association) | 0.930 |
| RAB7A | RILP | psi-mi:“MI:0915”(physical association) | 0.930 |
| EIF2S1 | EIF2S3 | psi-mi:“MI:0914”(association) | 0.820 |
| OSBPL1A | RAB7A | psi-mi:“MI:0915”(physical association) | 0.670 |
| RILP | VPS41 | psi-mi:“MI:0915”(physical association) | 0.570 |
| RILP | VPS41 | psi-mi:“MI:0403”(colocalization) | 0.570 |
| RILP | VPS41 | psi-mi:“MI:0407”(direct interaction) | 0.570 |
| TGFBR2 | RILP | psi-mi:“MI:0915”(physical association) | 0.560 |
| SPRED1 | RILP | psi-mi:“MI:0915”(physical association) | 0.560 |
| INSR | ACTB | psi-mi:“MI:0914”(association) | 0.530 |
| RILP | VPS16 | psi-mi:“MI:0915”(physical association) | 0.460 |
| RILP | VPS18 | psi-mi:“MI:0915”(physical association) | 0.460 |
| RILP | VPS11 | psi-mi:“MI:0915”(physical association) | 0.460 |
| RILP | VPS39 | psi-mi:“MI:0915”(physical association) | 0.460 |
| RILP | VPS18 | psi-mi:“MI:0403”(colocalization) | 0.460 |
| VPS39 | RILP | psi-mi:“MI:0403”(colocalization) | 0.460 |
| RILP | VPS16 | psi-mi:“MI:0403”(colocalization) | 0.460 |
| RILP | VPS11 | psi-mi:“MI:0403”(colocalization) | 0.460 |
| RAB7A | psi-mi:“MI:0407”(direct interaction) | 0.440 |
BioGRID (41): RILP (Two-hybrid), VPS11 (Reconstituted Complex), VPS16 (Reconstituted Complex), VPS18 (Reconstituted Complex), VPS39 (Reconstituted Complex), VPS41 (Reconstituted Complex), RILP (Reconstituted Complex), RAB7A (Reconstituted Complex), RILP (Affinity Capture-MS), RAB7A (Affinity Capture-Western), RILP (Affinity Capture-Western), RAB7A (Affinity Capture-Western), RILP (Two-hybrid), RAB7A (Affinity Capture-Western), RILP (Two-hybrid)
ESM2 similar proteins: A0A140LIT1, A0A1B0GVG4, A0A494C0Y3, A0JNH6, A0JNN8, A1A5D9, A2ARS0, A5A769, A5PJP1, A6NC98, A7YWC8, C9JTQ0, O15049, O35764, O95502, P0C7N4, P0DPE3, P58660, Q0P5D1, Q1HCM0, Q2TAC2, Q3LUD3, Q3LUD4, Q3TMW1, Q3UMT1, Q4QRL3, Q5BLP8, Q5JTB6, Q6QNY0, Q6QZQ4, Q8BP01, Q8C7U1, Q8CHW5, Q8K262, Q8N283, Q8N6Y0, Q8TAT2, Q8TER5, Q8TF21, Q91XV7
Diamond homologs: A0PJT0, Q17QG3, Q5EBL4, Q5ND29, Q96NA2
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 25 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| endosomal vesicle fusion | 5 | 244.2× | 2e-09 |
| endosome to lysosome transport | 6 | 87.9× | 6e-09 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
64 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 53 |
| Likely benign | 3 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
0 predictions. Top by Δscore:
AlphaMissense
2547 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:1648407:C:G | R255P | 0.992 |
| 17:1648398:A:G | L258P | 0.991 |
| 17:1647865:A:G | M305T | 0.990 |
| 17:1649031:A:G | L148P | 0.988 |
| 17:1649710:G:T | A32D | 0.986 |
| 17:1649689:A:G | L39P | 0.985 |
| 17:1647877:A:G | I301T | 0.983 |
| 17:1648365:A:G | L269P | 0.983 |
| 17:1649282:A:G | L116P | 0.983 |
| 17:1649022:A:G | L151P | 0.982 |
| 17:1649001:A:G | L158P | 0.980 |
| 17:1648382:G:C | F263L | 0.979 |
| 17:1648382:G:T | F263L | 0.979 |
| 17:1648384:A:G | F263L | 0.979 |
| 17:1648377:A:G | L265P | 0.978 |
| 17:1648394:T:A | K259N | 0.978 |
| 17:1648394:T:G | K259N | 0.978 |
| 17:1649244:C:G | A129P | 0.978 |
| 17:1647877:A:C | I301S | 0.976 |
| 17:1649258:C:G | R124P | 0.975 |
| 17:1646915:A:G | I340T | 0.974 |
| 17:1648395:T:A | K259I | 0.974 |
| 17:1649249:A:G | L127P | 0.974 |
| 17:1649620:A:G | L62P | 0.972 |
| 17:1647873:C:A | K302N | 0.969 |
| 17:1647873:C:G | K302N | 0.969 |
| 17:1647872:C:G | A303P | 0.968 |
| 17:1647898:A:T | V294D | 0.968 |
| 17:1648371:T:A | E267V | 0.968 |
| 17:1648350:C:G | R274P | 0.967 |
dbSNP variants (sampled 300 via entrez): RS1000325663 (17:1649427 G>A,T), RS1000464998 (17:1647198 G>A), RS1000532766 (17:1648243 T>C), RS1000648800 (17:1648011 T>C,G), RS1001010739 (17:1650260 C>G), RS1001289560 (17:1647276 A>G), RS1001590531 (17:1647510 GAAT>G), RS1002205595 (17:1647094 G>A), RS1002318513 (17:1646891 C>T), RS1002586045 (17:1645832 G>A,T), RS1002769236 (17:1650774 G>A), RS1004418082 (17:1649137 G>A,C), RS1004445334 (17:1649894 T>G), RS1004498685 (17:1650008 C>A,G), RS1004778492 (17:1648600 G>C)
Disease associations
OMIM: gene MIM:607848 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
28 total (human), top 28 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Tobacco Smoke Pollution | decreases methylation, decreases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| triphenyl phosphate | affects expression | 1 |
| propionaldehyde | increases expression | 1 |
| hydroxyhydroquinone | decreases expression, decreases reaction | 1 |
| tris(2-butoxyethyl) phosphate | affects expression | 1 |
| sodium arsenite | increases expression | 1 |
| butyraldehyde | increases expression | 1 |
| 4-aminobenzhydrazide | decreases expression, decreases reaction | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| entinostat | increases expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Benzo(a)pyrene | decreases methylation | 1 |
| Cisplatin | affects cotreatment, increases expression | 1 |
| Dichlorodiphenyl Dichloroethylene | decreases expression | 1 |
| Diazinon | increases methylation | 1 |
| Silicon Dioxide | increases expression | 1 |
| Smoke | decreases expression | 1 |
| Triclosan | decreases expression | 1 |
| Urethane | increases expression | 1 |
| Valproic Acid | decreases expression, increases methylation | 1 |
| 8-Bromo Cyclic Adenosine Monophosphate | increases expression | 1 |
| 1-Methyl-4-phenylpyridinium | increases expression | 1 |
| Aflatoxin B1 | decreases expression | 1 |
| Cadmium Chloride | decreases expression | 1 |
| Copper Sulfate | decreases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.