RIOK2
gene geneOn this page
Also known as FLJ11159
Summary
RIOK2 (RIO kinase 2, HGNC:18999) is a protein-coding gene on chromosome 5q15, encoding Serine/threonine-protein kinase RIO2 (Q9BVS4). Serine/threonine-protein kinase involved in the final steps of cytoplasmic maturation of the 40S ribosomal subunit. It is a common-essential gene (DepMap: required in 95.6% of cancer cell lines).
Predicted to enable protein kinase activity. Involved in several processes, including positive regulation of rRNA processing; positive regulation of ribosomal small subunit export from nucleus; and regulation of mitotic metaphase/anaphase transition. Located in cytoplasm. Part of preribosome, small subunit precursor.
Source: NCBI Gene 55781 — RefSeq curated summary.
At a glance
- Gene–disease (curated): male infertility with azoospermia or oligozoospermia due to single gene mutation (Limited, GenCC)
- GWAS associations: 2
- Clinical variants (ClinVar): 92 total
- Druggable target: yes — 17 molecules with ChEMBL bioactivity
- Cancer dependency (DepMap): dependent in 95.6% of screened cell lines (common-essential)
- MANE Select transcript:
NM_018343
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:18999 |
| Approved symbol | RIOK2 |
| Name | RIO kinase 2 |
| Location | 5q15 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ11159 |
| Ensembl gene | ENSG00000058729 |
| Ensembl biotype | protein_coding |
| OMIM | 617754 |
| Entrez | 55781 |
Gene structure
Transcript identifiers
Ensembl transcripts: 11 — 8 protein_coding, 2 retained_intron, 1 nonsense_mediated_decay
ENST00000283109, ENST00000508447, ENST00000508991, ENST00000510384, ENST00000511012, ENST00000511293, ENST00000511920, ENST00000902084, ENST00000924329, ENST00000924330, ENST00000924331
RefSeq mRNA: 2 — MANE Select: NM_018343
NM_001159749, NM_018343
CCDS: CCDS4089, CCDS54884
Canonical transcript exons
ENST00000283109 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000908295 | 97173175 | 97173263 |
| ENSE00000908296 | 97171206 | 97171397 |
| ENSE00000908297 | 97168760 | 97168852 |
| ENSE00000908298 | 97167467 | 97167991 |
| ENSE00000908299 | 97165051 | 97165147 |
| ENSE00001159839 | 97183126 | 97183247 |
| ENSE00001175067 | 97177116 | 97177291 |
| ENSE00001229156 | 97160867 | 97163225 |
| ENSE00003509929 | 97177732 | 97177848 |
| ENSE00003656941 | 97179055 | 97179193 |
Expression profiles
Bgee: expression breadth ubiquitous, 267 present calls, max score 94.87.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 21.9749 / max 598.3145, expressed in 1795 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 62717 | 21.9749 | 1795 |
Top tissues by expression
283 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| oocyte | CL:0000023 | 94.87 | gold quality |
| secondary oocyte | CL:0000655 | 94.36 | gold quality |
| calcaneal tendon | UBERON:0003701 | 92.43 | gold quality |
| ganglionic eminence | UBERON:0004023 | 92.14 | gold quality |
| stromal cell of endometrium | CL:0002255 | 91.19 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 91.18 | gold quality |
| adrenal tissue | UBERON:0018303 | 90.37 | gold quality |
| ventricular zone | UBERON:0003053 | 90.04 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 89.53 | gold quality |
| cortical plate | UBERON:0005343 | 89.40 | gold quality |
| body of pancreas | UBERON:0001150 | 88.95 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 88.27 | gold quality |
| islet of Langerhans | UBERON:0000006 | 87.74 | gold quality |
| gastrocnemius | UBERON:0001388 | 87.68 | gold quality |
| pancreas | UBERON:0001264 | 87.55 | gold quality |
| muscle of leg | UBERON:0001383 | 87.32 | gold quality |
| embryo | UBERON:0000922 | 86.33 | gold quality |
| left ovary | UBERON:0002119 | 86.24 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 86.22 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 86.04 | gold quality |
| right lobe of liver | UBERON:0001114 | 85.95 | gold quality |
| right ovary | UBERON:0002118 | 85.94 | gold quality |
| omental fat pad | UBERON:0010414 | 85.92 | gold quality |
| right adrenal gland | UBERON:0001233 | 85.87 | gold quality |
| peritoneum | UBERON:0002358 | 85.86 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 85.67 | gold quality |
| ovary | UBERON:0000992 | 85.63 | gold quality |
| body of stomach | UBERON:0001161 | 85.57 | gold quality |
| left adrenal gland | UBERON:0001234 | 85.54 | gold quality |
| rectum | UBERON:0001052 | 85.46 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-124858 | no | 637.84 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
92 targeting RIOK2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-4776-3P | 100.00 | 68.73 | 1340 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-6758-5P | 100.00 | 66.21 | 1470 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-144-3P | 99.94 | 73.98 | 2698 |
| HSA-MIR-3682-5P | 99.93 | 67.97 | 1163 |
| HSA-MIR-22-3P | 99.93 | 68.13 | 917 |
| HSA-MIR-1305 | 99.91 | 71.43 | 3443 |
| HSA-MIR-3529-3P | 99.90 | 73.55 | 3045 |
| HSA-MIR-7162-3P | 99.89 | 68.16 | 1682 |
| HSA-MIR-182-5P | 99.87 | 74.03 | 2589 |
| HSA-MIR-6124 | 99.87 | 69.78 | 3551 |
| HSA-MIR-4503 | 99.85 | 71.45 | 1869 |
| HSA-MIR-202-3P | 99.84 | 71.41 | 1290 |
| HSA-MIR-944 | 99.82 | 70.85 | 3042 |
| HSA-MIR-4307 | 99.82 | 70.45 | 3374 |
| HSA-MIR-4760-5P | 99.80 | 69.88 | 1619 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 95.6% of screened cell lines, common-essential.
Literature-anchored findings (GeneRIF, showing 11)
- Results show that the protein kinase human Rio2 (hRio2) is part of a late 40S preribosomal particle in human cells. (PMID:19564402)
- Plk1-mediated phosphorylation of Rio2 regulates metaphase-anaphase transition during mitotic progression. (PMID:21880710)
- reduced expression of RIOK1 or RIOK2 disrupted Akt signaling and caused cell cycle exit, apoptosis, and chemosensitivity in glioblastoma cells (PMID:23459592)
- As RIO2 is involved in the biosynthesis of the ribosome and cell cycle regulation, our selective ligand may be useful for the delineation of the biological role of this kinase. (PMID:25891899)
- These results suggested that RIOK2 and NOB1 may be potential targets in the treatment of Non-small cell lung cancer (NSCLC), and miR145 may be considered a therapeutic inhibitor of both genes. (PMID:29749434)
- Results describe three atomic structures of RIO2 kinase showing that it forms homodimer in vitro. Upon self-association, each protomer ATP-binding pocket is partially remodeled. The homodimerization is mediated by key residues previously shown to be responsible for ATP binding and catalysis. This data reveals an intricate mechanism where identical residues are involved in substrate binding and oligomeric state formation. (PMID:31390939)
- RIOK2 is negatively regulated by miR-4744 and promotes glioma cell migration/invasion through epithelial-mesenchymal transition. (PMID:32125767)
- BYSL contributes to tumor growth by cooperating with the mTORC2 complex in gliomas. (PMID:33628587)
- RIOK2 phosphorylation by RSK promotes synthesis of the human small ribosomal subunit. (PMID:34125833)
- Identification of RIOK2 as a master regulator of human blood cell development. (PMID:34937919)
- RIOK2 Contributes to Cell Growth and Protein Synthesis in Human Oral Squamous Cell Carcinoma. (PMID:36661680)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | riok2 | ENSDARG00000035264 |
| mus_musculus | Riok2 | ENSMUSG00000116564 |
| rattus_norvegicus | Riok2 | ENSRNOG00000012692 |
| drosophila_melanogaster | RIOK2 | FBGN0039306 |
| caenorhabditis_elegans | riok-2 | WBGENE00013688 |
Paralogs (3): RIOK3 (ENSG00000101782), RIOK1 (ENSG00000124784), ATMIN (ENSG00000166454)
Protein
Protein identifiers
Serine/threonine-protein kinase RIO2 — Q9BVS4 (reviewed: Q9BVS4)
Alternative names: RIO kinase 2
All UniProt accessions (4): Q9BVS4, D6RB96, H0Y8R4, H0Y919
UniProt curated annotations — full annotation on UniProt →
Function. Serine/threonine-protein kinase involved in the final steps of cytoplasmic maturation of the 40S ribosomal subunit. Involved in export of the 40S pre-ribosome particles (pre-40S) from the nucleus to the cytoplasm. Its kinase activity is required for the release of NOB1, PNO1 and LTV1 from the late pre-40S and the processing of 18S-E pre-rRNA to the mature 18S rRNA. Regulates the timing of the metaphase-anaphase transition during mitotic progression, and its phosphorylation, most likely by PLK1, regulates this function.
Subunit / interactions. Associated with late 40S pre-ribosomal particles. Interacts with PLK1 (via its N-terminus).
Subcellular location. Cytoplasm.
Post-translational modifications. Autophosphorylated (in vitro). Phosphorylation at Ser-335, Ser-380, Ser-548 by PLK1 affects the timing of the metaphase-anaphase transition.
Similarity. Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9BVS4-1 | 1 | yes |
| Q9BVS4-2 | 2 |
RefSeq proteins (2): NP_001153221, NP_060813* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000687 | RIO_kinase | Domain |
| IPR011009 | Kinase-like_dom_sf | Homologous_superfamily |
| IPR015285 | RIO2_wHTH_N | Domain |
| IPR018934 | RIO_dom | Domain |
| IPR018935 | RIO_kinase_CS | Conserved_site |
| IPR030484 | Rio2 | Domain |
| IPR036388 | WH-like_DNA-bd_sf | Homologous_superfamily |
| IPR036390 | WH_DNA-bd_sf | Homologous_superfamily |
Pfam: PF01163, PF09202
Catalyzed reactions (Rhea), 2 shown:
- L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+) (RHEA:17989)
- L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+) (RHEA:46608)
UniProt features (72 total): helix 15, modified residue 14, strand 14, sequence variant 11, mutagenesis site 10, turn 2, chain 1, domain 1, splice variant 1, short sequence motif 1, active site 1, binding site 1
Structure
Experimental structures (PDB)
10 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6FDM | X-RAY DIFFRACTION | 2.1 |
| 5DHF | X-RAY DIFFRACTION | 2.29 |
| 6HK6 | X-RAY DIFFRACTION | 2.35 |
| 7VBT | X-RAY DIFFRACTION | 2.54 |
| 6FDO | X-RAY DIFFRACTION | 2.6 |
| 6FDN | X-RAY DIFFRACTION | 2.9 |
| 9F81 | X-RAY DIFFRACTION | 3.02 |
| 7WU0 | ELECTRON MICROSCOPY | 3.3 |
| 6G18 | ELECTRON MICROSCOPY | 3.6 |
| 6G51 | ELECTRON MICROSCOPY | 4.1 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9BVS4-F1 | 67.80 | 0.32 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 228 (proton acceptor)
Ligand- & substrate-binding residues (1): 123
Post-translational modifications (14): 380, 382, 385, 390, 412, 417, 442, 445, 548, 332, 335, 337, 350, 362
Mutagenesis-validated functional residues (10):
| Position | Phenotype |
|---|---|
| 123 | abolishes autophosphorylation; impairs release of pre-40s trans-acting factors and rrna processing; when associated with |
| 246 | abolishes autophosphorylation; impairs release of pre-40s trans-acting factors and rrna processing; when associated with |
| 335 | does not affect autophosphorylation activity; when associated with a-380 and a-548. does not affect the timing of metaph |
| 335 | increases time spent in metaphase; when associated with d-380 and d-548. |
| 380 | does not affect autophosphorylation activity; when associated with a-335 and a-548. does not affect the timing of metaph |
| 380 | increases time spent in metaphase; when associated with d-335 and d-548. |
| 400 | nuclear relocalization; when associated with a-403. |
| 403 | nuclear relocalization; when associated with a-400. |
| 548 | does not affect autophosphorylation activity; when associated with a-335 and a-380. does not affect the timing of metaph |
| 548 | increases time spent in metaphase; when associated with d-335 and d-380. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-6791226 | Major pathway of rRNA processing in the nucleolus and cytosol |
MSigDB gene sets: 165 (showing top):
GOBP_CHROMOSOME_ORGANIZATION, GOBP_RIBOSOME_BIOGENESIS, RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP, GOBP_MATURATION_OF_SSU_RRNA, GRAESSMANN_APOPTOSIS_BY_SERUM_DEPRIVATION_UP, GOBP_CELL_CYCLE_PHASE_TRANSITION, GOBP_POSITIVE_REGULATION_OF_INTRACELLULAR_TRANSPORT, GOBP_NUCLEAR_TRANSPORT, WEI_MYCN_TARGETS_WITH_E_BOX, MARTINEZ_RB1_TARGETS_UP, GOBP_REGULATION_OF_CHROMOSOME_SEGREGATION, GOBP_REGULATION_OF_NUCLEOCYTOPLASMIC_TRANSPORT, GOBP_RIBOSOMAL_SMALL_SUBUNIT_BIOGENESIS, GOBP_REGULATION_OF_CELLULAR_LOCALIZATION, GOBP_REGULATION_OF_CELL_CYCLE
GO Biological Process (8): regulation of mitotic metaphase/anaphase transition (GO:0030071), maturation of SSU-rRNA (GO:0030490), ribosomal small subunit biogenesis (GO:0042274), protein autophosphorylation (GO:0046777), positive regulation of ribosomal small subunit export from nucleus (GO:2000208), positive regulation of rRNA processing (GO:2000234), protein phosphorylation (GO:0006468), ribosome biogenesis (GO:0042254)
GO Molecular Function (10): protein kinase activity (GO:0004672), protein serine/threonine kinase activity (GO:0004674), ATP binding (GO:0005524), metal ion binding (GO:0046872), protein serine kinase activity (GO:0106310), nucleotide binding (GO:0000166), catalytic activity (GO:0003824), protein binding (GO:0005515), kinase activity (GO:0016301), transferase activity (GO:0016740)
GO Cellular Component (5): nucleus (GO:0005634), nucleoplasm (GO:0005654), cytoplasm (GO:0005737), cytosol (GO:0005829), preribosome, small subunit precursor (GO:0030688)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| rRNA processing in the nucleus and cytosol | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| rRNA processing | 2 |
| ribonucleoprotein complex biogenesis | 2 |
| protein kinase activity | 2 |
| metaphase/anaphase transition of mitotic cell cycle | 1 |
| regulation of mitotic cell cycle phase transition | 1 |
| regulation of metaphase/anaphase transition of cell cycle | 1 |
| ribosomal small subunit biogenesis | 1 |
| ribosome biogenesis | 1 |
| protein phosphorylation | 1 |
| ribosomal small subunit export from nucleus | 1 |
| positive regulation of ribosomal subunit export from nucleus | 1 |
| regulation of ribosomal small subunit export from nucleus | 1 |
| positive regulation of RNA metabolic process | 1 |
| regulation of rRNA processing | 1 |
| phosphorylation | 1 |
| protein modification process | 1 |
| kinase activity | 1 |
| phosphotransferase activity, alcohol group as acceptor | 1 |
| catalytic activity, acting on a protein | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| cation binding | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| molecular_function | 1 |
| binding | 1 |
| transferase activity, transferring phosphorus-containing groups | 1 |
| catalytic activity | 1 |
| intracellular membrane-bounded organelle | 1 |
| nuclear lumen | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| preribosome | 1 |
Protein interactions and networks
STRING
2573 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RIOK2 | LTV1 | Q96GA3 | 943 |
| RIOK2 | BYSL | Q13895 | 942 |
| RIOK2 | TSR1 | Q2NL82 | 937 |
| RIOK2 | PNO1 | Q9NRX1 | 902 |
| RIOK2 | NOB1 | Q9ULX3 | 894 |
| RIOK2 | RRP12 | Q5JTH9 | 842 |
| RIOK2 | RIOK3 | O14730 | 775 |
| RIOK2 | BMS1 | Q14692 | 764 |
| RIOK2 | RIOK1 | Q9BRS2 | 725 |
| RIOK2 | NMD3 | Q96D46 | 723 |
| RIOK2 | XPO1 | O14980 | 699 |
| RIOK2 | RPS10 | P46783 | 675 |
| RIOK2 | RPS3 | P23396 | 667 |
| RIOK2 | LSG1 | Q9H089 | 658 |
| RIOK2 | DHX15 | O43143 | 647 |
IntAct
76 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| NUP50 | KPNA3 | psi-mi:“MI:0914”(association) | 0.780 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| SRPK1 | SNRPC | psi-mi:“MI:0914”(association) | 0.640 |
| BYSL | PARN | psi-mi:“MI:0914”(association) | 0.640 |
| RIOK2 | psi-mi:“MI:0915”(physical association) | 0.560 | |
| RIOK2 | BYSL | psi-mi:“MI:0914”(association) | 0.530 |
| MINK1 | CNOT1 | psi-mi:“MI:0914”(association) | 0.530 |
| TMEM63A | AP3D1 | psi-mi:“MI:0914”(association) | 0.530 |
| MYO1C | TMOD1 | psi-mi:“MI:0914”(association) | 0.530 |
| GHITM | MFN2 | psi-mi:“MI:0914”(association) | 0.530 |
| DDX21 | MED19 | psi-mi:“MI:2364”(proximity) | 0.480 |
| CSNK2A1 | RIOK2 | psi-mi:“MI:0217”(phosphorylation reaction) | 0.440 |
| RIOK2 | SMAD3 | psi-mi:“MI:0915”(physical association) | 0.370 |
| RELA | RIOK2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| RIOK2 | GFUS | psi-mi:“MI:0915”(physical association) | 0.370 |
| RIOK2 | RPRD1A | psi-mi:“MI:0915”(physical association) | 0.370 |
| Rpl35 | RPS6 | psi-mi:“MI:0914”(association) | 0.350 |
| Cep120 | TBC1D31 | psi-mi:“MI:0914”(association) | 0.350 |
| VPS16 | TTC31 | psi-mi:“MI:0914”(association) | 0.350 |
| HNRNPU | psi-mi:“MI:0914”(association) | 0.350 | |
| Xpo1 | IFT56 | psi-mi:“MI:0914”(association) | 0.350 |
| TAFA3 | FUOM | psi-mi:“MI:0914”(association) | 0.350 |
| GRB7 | RIOK3 | psi-mi:“MI:0914”(association) | 0.350 |
| P | psi-mi:“MI:0914”(association) | 0.350 | |
| RYBP | PIPSL | psi-mi:“MI:0914”(association) | 0.350 |
| RIOK2 | MACROH2A1 | psi-mi:“MI:0914”(association) | 0.350 |
| BYSL | RPS3A | psi-mi:“MI:0914”(association) | 0.350 |
| CAPZB | ENAH | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (145): TSR1 (Co-fractionation), RIOK2 (Proximity Label-MS), RIOK2 (Affinity Capture-MS), RIOK2 (Affinity Capture-MS), RIOK2 (Affinity Capture-MS), RIOK2 (Affinity Capture-MS), RIOK2 (Affinity Capture-MS), RIOK2 (Affinity Capture-MS), RIOK2 (Affinity Capture-MS), RIOK2 (Affinity Capture-MS), RIOK2 (Affinity Capture-MS), RIOK2 (Affinity Capture-MS), RIOK2 (Affinity Capture-MS), RIOK2 (Affinity Capture-MS), RIOK2 (Affinity Capture-MS)
ESM2 similar proteins: A1ZAJ2, A8WRG3, A8XQD5, E7F187, G5EEM9, G5EFD2, I2HAA0, O01583, O01991, O43166, O43314, O45818, O60333, O80528, O82486, O88658, P24583, P43125, P50526, P91309, P91682, Q06685, Q10003, Q11186, Q14149, Q17BU3, Q28WQ1, Q4R8E0, Q5R9Y9, Q5REW0, Q60575, Q60L58, Q61T02, Q640I9, Q6GQT0, Q6NSI8, Q6P158, Q7PHR1, Q7YZT6, Q8C0T5
Diamond homologs: A5UAM9, A5UG81, A6VQT5, B0RTE2, B0U358, B2FR65, B2I5R8, B2SLU1, B4SLP5, O86224, P58551, Q2P6W5, Q3BWM9, Q4QNS8, Q4URM8, Q5H410, Q65R39, Q6LVM6, Q7MPR5, Q87C81, Q87T74, Q8DDZ1, Q8PBX3, Q8PNH3, Q9BVS4, Q9CLD5, Q9CQS5, Q9KVB9, Q9PBJ1, Q9UYB9, P40160, Q54T05, Q58473, Q95Q34, Q9P7W5, O30245, Q57886, D4GYY1
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| PLK1 | “up-regulates activity” | RIOK2 | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 109 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Eukaryotic Translation Initiation | 6 | 24.7× | 4e-06 |
| Cap-dependent Translation Initiation | 6 | 24.7× | 4e-06 |
| SARS-CoV-1 modulates host translation machinery | 6 | 24.7× | 4e-06 |
| Formation of the ternary complex, and subsequently, the 43S complex | 8 | 23.0× | 4e-07 |
| Eukaryotic Translation Elongation | 6 | 22.3× | 7e-06 |
| Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S | 6 | 21.8× | 8e-06 |
| Translation initiation complex formation | 8 | 20.3× | 6e-07 |
| Ribosomal scanning and start codon recognition | 8 | 20.3× | 6e-07 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 5 | 34.8× | 7e-05 |
| ribosomal small subunit biogenesis | 8 | 18.8× | 7e-06 |
| cytoplasmic translation | 8 | 15.3× | 2e-05 |
| translation | 8 | 8.5× | 9e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
92 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 72 |
| Likely benign | 3 |
| Benign | 4 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1384 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 5:97163223:TTCC:T | acceptor_loss | 1.0000 |
| 5:97163226:C:CC | acceptor_gain | 1.0000 |
| 5:97163226:C:CG | acceptor_loss | 1.0000 |
| 5:97163227:T:A | acceptor_loss | 1.0000 |
| 5:97165044:TACTT:T | donor_loss | 1.0000 |
| 5:97165045:ACTTA:A | donor_loss | 1.0000 |
| 5:97165046:CT:C | donor_loss | 1.0000 |
| 5:97165047:TTACT:T | donor_loss | 1.0000 |
| 5:97165048:TA:T | donor_loss | 1.0000 |
| 5:97165049:A:AC | donor_gain | 1.0000 |
| 5:97165050:C:CT | donor_gain | 1.0000 |
| 5:97165050:CT:C | donor_gain | 1.0000 |
| 5:97165050:CTG:C | donor_gain | 1.0000 |
| 5:97165050:CTGG:C | donor_gain | 1.0000 |
| 5:97165050:CTGGA:C | donor_gain | 1.0000 |
| 5:97165143:CATCT:C | acceptor_gain | 1.0000 |
| 5:97165146:CT:C | acceptor_gain | 1.0000 |
| 5:97165148:C:CC | acceptor_gain | 1.0000 |
| 5:97165148:CTAAA:C | acceptor_loss | 1.0000 |
| 5:97167989:CTC:C | acceptor_gain | 1.0000 |
| 5:97167990:TC:T | acceptor_gain | 1.0000 |
| 5:97167991:CC:C | acceptor_gain | 1.0000 |
| 5:97167992:C:CC | acceptor_gain | 1.0000 |
| 5:97168755:CAAA:C | donor_loss | 1.0000 |
| 5:97168756:AAACC:A | donor_loss | 1.0000 |
| 5:97168757:AAC:A | donor_loss | 1.0000 |
| 5:97168758:A:AT | donor_loss | 1.0000 |
| 5:97168759:C:CA | donor_loss | 1.0000 |
| 5:97171204:A:AC | donor_gain | 1.0000 |
| 5:97171205:C:CC | donor_gain | 1.0000 |
AlphaMissense
3671 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 5:97171289:A:C | F232L | 1.000 |
| 5:97171289:A:T | F232L | 1.000 |
| 5:97171291:A:G | F232L | 1.000 |
| 5:97171302:T:A | D228V | 1.000 |
| 5:97177166:A:G | W150R | 1.000 |
| 5:97177166:A:T | W150R | 1.000 |
| 5:97179162:A:T | V33D | 1.000 |
| 5:97168839:C:G | D265H | 0.999 |
| 5:97171238:C:A | Q249H | 0.999 |
| 5:97171238:C:G | Q249H | 0.999 |
| 5:97171247:A:C | D246E | 0.999 |
| 5:97171247:A:T | D246E | 0.999 |
| 5:97171248:T:A | D246V | 0.999 |
| 5:97171248:T:C | D246G | 0.999 |
| 5:97171248:T:G | D246A | 0.999 |
| 5:97171249:C:G | D246H | 0.999 |
| 5:97171284:A:G | L234P | 0.999 |
| 5:97171286:A:C | N233K | 0.999 |
| 5:97171286:A:T | N233K | 0.999 |
| 5:97171288:T:C | N233D | 0.999 |
| 5:97171301:A:C | D228E | 0.999 |
| 5:97171301:A:T | D228E | 0.999 |
| 5:97171302:T:C | D228G | 0.999 |
| 5:97171302:T:G | D228A | 0.999 |
| 5:97171303:C:G | D228H | 0.999 |
| 5:97171314:A:G | L224P | 0.999 |
| 5:97173214:C:G | R183P | 0.999 |
| 5:97173215:G:T | R183S | 0.999 |
| 5:97173238:A:T | V175D | 0.999 |
| 5:97177141:G:T | A158D | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000092017 (5:97185099 A>G), RS1000123404 (5:97184954 C>A,G), RS1000449841 (5:97174313 G>C), RS1000500450 (5:97174607 T>A,C,G), RS1000509148 (5:97160526 C>A,G,T), RS1000690652 (5:97166967 G>A,T), RS1000698878 (5:97167369 T>C,G), RS1000701141 (5:97174345 G>A), RS1001123959 (5:97166742 G>T), RS1001368713 (5:97172701 A>G), RS1001426337 (5:97179583 C>T), RS1001780151 (5:97165978 A>G), RS1001930198 (5:97168654 C>A,T), RS1001991177 (5:97161248 A>G), RS1002020244 (5:97160864 G>A)
Disease associations
OMIM: gene MIM:617754 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| male infertility with azoospermia or oligozoospermia due to single gene mutation | Limited | Autosomal recessive |
Mondo (1): (MONDO:0018393)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST008708_1 | Chronic mountain sickness | 7.000000e-06 |
| GCST009391_2148 | Metabolite levels | 7.000000e-06 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0010143 | chronic mountain sickness |
| EFO:0010551 | xanthurenate measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL6000 (SINGLE PROTEIN), CHEMBL6195604 (PROTEIN-PROTEIN INTERACTION)
Molecules with ChEMBL bioactivity
17 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 139,815 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1287853 | FEDRATINIB | 4 | 3,554 |
| CHEMBL1789941 | RUXOLITINIB | 4 | 11,547 |
| CHEMBL477772 | PAZOPANIB | 4 | 15,540 |
| CHEMBL535 | SUNITINIB | 4 | 79,020 |
| CHEMBL608533 | MIDOSTAURIN | 4 | 7,259 |
| CHEMBL1908391 | MASITINIB | 3 | 2,808 |
| CHEMBL522892 | DOVITINIB | 3 | 4,944 |
| CHEMBL603469 | LESTAURTINIB | 3 | |
| CHEMBL1721885 | SU-014813 | 2 | 363 |
| CHEMBL230011 | TG100-115 | 2 | 1,504 |
| CHEMBL475251 | R-406 | 2 | 762 |
| CHEMBL521851 | PICTILISIB | 2 | 6,071 |
| CHEMBL572878 | TOZASERTIB | 2 | 2,998 |
| CHEMBL1908397 | KW-2449 | 1 | 622 |
| CHEMBL296468 | BMS-387032 | 1 | 2,075 |
| CHEMBL4647810 | ELIMUSERTIB | 1 | 297 |
| CHEMBL574738 | AST-487 | 1 | 451 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — RIO2 subfamily
ChEMBL bioactivities
83 potent at pChembl≥5 of 88 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
PubChem BioAssay actives
74 with measured affinity, of 375 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 8-(6-methoxy-3-pyridinyl)-1-[4-piperazin-1-yl-3-(trifluoromethyl)phenyl]-5H-triazolo[4,5-c]quinolin-4-one | 1910807: Binding affinity to wild-type human partial length RIOK2 (M1 to D313 residues) expressed in mammalian expression system assessed as dissociation constant by KINOMEscan assay | kd | 0.0061 | uM |
| 1-(3-chloro-4-piperazin-1-ylphenyl)-8-(6-methoxy-3-pyridinyl)-5H-triazolo[4,5-c]quinolin-4-one | 1910807: Binding affinity to wild-type human partial length RIOK2 (M1 to D313 residues) expressed in mammalian expression system assessed as dissociation constant by KINOMEscan assay | kd | 0.0073 | uM |
| 8-(6-methoxy-3-pyridinyl)-1-(3-methyl-4-piperazin-1-ylphenyl)-5H-triazolo[4,5-c]quinolin-4-one | 1910807: Binding affinity to wild-type human partial length RIOK2 (M1 to D313 residues) expressed in mammalian expression system assessed as dissociation constant by KINOMEscan assay | kd | 0.0084 | uM |
| 1-(3-fluoro-4-piperazin-1-ylphenyl)-8-(6-methoxy-3-pyridinyl)-5H-triazolo[4,5-c]quinolin-4-one | 1910807: Binding affinity to wild-type human partial length RIOK2 (M1 to D313 residues) expressed in mammalian expression system assessed as dissociation constant by KINOMEscan assay | kd | 0.0180 | uM |
| 8-(6-methoxy-3-pyridinyl)-1-[4-piperazin-1-yl-3-(trifluoromethyl)phenyl]-5H-pyrazolo[4,5-c]quinolin-4-one | 1977525: Binding affinity to RIOK2 (unknown origin) assessed as dissociation constant by KINOMEscan assay | kd | 0.0190 | uM |
| 1-(3-methoxy-4-piperazin-1-ylphenyl)-8-(6-methoxy-3-pyridinyl)-5H-triazolo[4,5-c]quinolin-4-one | 1910807: Binding affinity to wild-type human partial length RIOK2 (M1 to D313 residues) expressed in mammalian expression system assessed as dissociation constant by KINOMEscan assay | kd | 0.0475 | uM |
| 8-(6-methoxy-3-pyridinyl)-3-methyl-1-[4-piperazin-1-yl-3-(trifluoromethyl)phenyl]-5H-imidazo[4,5-c]quinoline-2,4-dione | 1977525: Binding affinity to RIOK2 (unknown origin) assessed as dissociation constant by KINOMEscan assay | kd | 0.0480 | uM |
| 8-(6-methoxy-3-pyridinyl)-5-methyl-1-[4-piperazin-1-yl-3-(trifluoromethyl)phenyl]triazolo[4,5-c]quinolin-4-one | 1910807: Binding affinity to wild-type human partial length RIOK2 (M1 to D313 residues) expressed in mammalian expression system assessed as dissociation constant by KINOMEscan assay | kd | 0.0490 | uM |
| Sunitinib | 508063: Binding affinity to RIOK2 | kd | 0.0490 | uM |
| 8-(6-methoxy-3-pyridinyl)-1-[4-piperazin-1-yl-3-(trifluoromethyl)phenyl]-5H-imidazo[1,2-a]quinoxalin-4-one | 1977525: Binding affinity to RIOK2 (unknown origin) assessed as dissociation constant by KINOMEscan assay | kd | 0.0530 | uM |
| 8-(6-methoxy-3-pyridinyl)-1-[4-piperazin-1-yl-3-(trifluoromethyl)phenyl]-5H-imidazo[1,5-a]quinoxalin-4-one | 1977525: Binding affinity to RIOK2 (unknown origin) assessed as dissociation constant by KINOMEscan assay | kd | 0.0560 | uM |
| 8-(6-methoxy-3-pyridinyl)-1-[4-piperazin-1-yl-3-(trifluoromethyl)phenyl]-5H-imidazo[4,5-c]quinolin-4-one | 1977525: Binding affinity to RIOK2 (unknown origin) assessed as dissociation constant by KINOMEscan assay | kd | 0.0620 | uM |
| 8-(6-methoxy-3-pyridinyl)-1-[4-(4-methylpiperazin-1-yl)phenyl]-5H-triazolo[4,5-c]quinolin-4-one | 1910807: Binding affinity to wild-type human partial length RIOK2 (M1 to D313 residues) expressed in mammalian expression system assessed as dissociation constant by KINOMEscan assay | kd | 0.0630 | uM |
| 8-(6-methoxy-3-pyridinyl)-1-(4-piperazin-1-ylphenyl)-5H-triazolo[4,5-c]quinolin-4-one | 1910807: Binding affinity to wild-type human partial length RIOK2 (M1 to D313 residues) expressed in mammalian expression system assessed as dissociation constant by KINOMEscan assay | kd | 0.0630 | uM |
| Midostaurin | 508063: Binding affinity to RIOK2 | kd | 0.0970 | uM |
| 1-(4-methoxyphenyl)-8-(6-methoxy-3-pyridinyl)-5H-triazolo[4,5-c]quinolin-4-one | 1910807: Binding affinity to wild-type human partial length RIOK2 (M1 to D313 residues) expressed in mammalian expression system assessed as dissociation constant by KINOMEscan assay | kd | 0.1200 | uM |
| 5-(dimethylamino)-2-(pyridin-2-yldiazenyl)phenol;methanesulfonic acid | 1766474: Inhibition of RIOK2 in human VCaP cells after 48 hrs by Western blotting analysis | ic50 | 0.1300 | uM |
| 5-[(Z)-(5-fluoro-2-oxo-1H-indol-3-ylidene)methyl]-N-[(2S)-2-hydroxy-3-morpholin-4-ylpropyl]-2,4-dimethyl-1H-pyrrole-3-carboxamide | 625111: Binding constant for RIOK2 kinase domain | kd | 0.1400 | uM |
| N-(4-methyl-2-pyridinyl)-2-naphthalen-2-ylacetamide | 1685593: Binding affinity to RIOK2 (unknown origin) | kd | 0.1400 | uM |
| 8-(6-methoxy-3-pyridinyl)-1-[4-piperazin-1-yl-3-(trifluoromethyl)phenyl]-5H-pyrrolo[1,2-a]quinoxalin-4-one | 1977525: Binding affinity to RIOK2 (unknown origin) assessed as dissociation constant by KINOMEscan assay | kd | 0.1650 | uM |
| N-(3-methoxy-2-methyl-16-oxo-29-oxa-1,7,17-triazaoctacyclo[12.12.2.12,6.07,28.08,13.015,19.020,27.021,26]nonacosa-8,10,12,14,19,21,23,25,27-nonaen-4-yl)-N-methylbenzamide | 1910805: Binding affinity to RIOK2 (unknown origin) assessed as dissociation constant | kd | 0.2000 | uM |
| 1-[(E)-2-(1,3-thiazol-2-yl)ethenyl]naphthalen-2-ol | 1910807: Binding affinity to wild-type human partial length RIOK2 (M1 to D313 residues) expressed in mammalian expression system assessed as dissociation constant by KINOMEscan assay | kd | 0.2000 | uM |
| 1-(1,3-thiazol-2-yldiazenyl)naphthalen-2-ol | 1977520: Binding affinity to human RIOK2 assessed as dissociation constant by KINOMEscan assay | kd | 0.2000 | uM |
| 8-(6-methoxy-3-pyridinyl)-1-(4-phenylphenyl)-5H-triazolo[4,5-c]quinolin-4-one | 1910807: Binding affinity to wild-type human partial length RIOK2 (M1 to D313 residues) expressed in mammalian expression system assessed as dissociation constant by KINOMEscan assay | kd | 0.2350 | uM |
| N-[4-[4-(4-methylpiperazin-1-yl)-6-[(5-methyl-1H-pyrazol-3-yl)amino]pyrimidin-2-yl]sulfanylphenyl]cyclopropanecarboxamide | 625111: Binding constant for RIOK2 kinase domain | kd | 0.2500 | uM |
| 4-amino-5-fluoro-3-[6-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]-1H-quinolin-2-one | 625111: Binding constant for RIOK2 kinase domain | kd | 0.2600 | uM |
| 8-(6-ethoxy-3-pyridinyl)-1-[4-piperazin-1-yl-3-(trifluoromethyl)phenyl]-5H-triazolo[4,5-c]quinolin-4-one | 1910807: Binding affinity to wild-type human partial length RIOK2 (M1 to D313 residues) expressed in mammalian expression system assessed as dissociation constant by KINOMEscan assay | kd | 0.3850 | uM |
| (2S,3R,4R,6R)-3-methoxy-2-methyl-4-(methylamino)-29-oxa-1,7,17-triazaoctacyclo[12.12.2.12,6.07,28.08,13.015,19.020,27.021,26]nonacosa-8,10,12,14,19,21,23,25,27-nonaen-16-one | 625111: Binding constant for RIOK2 kinase domain | kd | 0.3900 | uM |
| 1-(4-chlorophenyl)-8-(6-methoxy-3-pyridinyl)-5H-triazolo[4,5-c]quinolin-4-one | 1910807: Binding affinity to wild-type human partial length RIOK2 (M1 to D313 residues) expressed in mammalian expression system assessed as dissociation constant by KINOMEscan assay | kd | 0.4550 | uM |
| 1-[4-[(4-ethylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl]-3-[4-[6-(methylamino)pyrimidin-4-yl]oxyphenyl]urea | 625111: Binding constant for RIOK2 kinase domain | kd | 0.5500 | uM |
| 8-(6-methoxy-3-pyridinyl)-1-[4-piperazin-1-yl-2-(trifluoromethyl)phenyl]-5H-triazolo[4,5-c]quinolin-4-one | 1910807: Binding affinity to wild-type human partial length RIOK2 (M1 to D313 residues) expressed in mammalian expression system assessed as dissociation constant by KINOMEscan assay | kd | 0.5750 | uM |
| Pazopanib | 625111: Binding constant for RIOK2 kinase domain | kd | 0.6100 | uM |
| (3R)-3-methyl-4-[4-(2-methylpyrazol-3-yl)-8-(1H-pyrazol-5-yl)-1,7-naphthyridin-2-yl]morpholine | 1652484: Binding affinity to wild-type human partial length RIOK2 (M1 to D313 residues) expressed in mammalian expression system by Kinomescan method | kd | 0.6600 | uM |
| 4-[2-(1H-indazol-4-yl)-6-[(4-methylsulfonylpiperazin-1-yl)methyl]thieno[3,2-d]pyrimidin-4-yl]morpholine | 625111: Binding constant for RIOK2 kinase domain | kd | 0.6700 | uM |
| N-[3-(5-chloro-1H-pyrrolo[2,3-b]pyridine-3-carbonyl)-2,4-difluorophenyl]propane-1-sulfonamide | 625111: Binding constant for RIOK2 kinase domain | kd | 0.7700 | uM |
| 3-(6-morpholin-4-yl-8-oxa-3,5,10-triazatricyclo[7.4.0.02,7]trideca-1(9),2(7),3,5,10,12-hexaen-4-yl)phenol | 625111: Binding constant for RIOK2 kinase domain | kd | 0.7700 | uM |
| 8-(6-methoxy-3-pyridinyl)-1-(4-methylphenyl)-5H-triazolo[4,5-c]quinolin-4-one | 1910807: Binding affinity to wild-type human partial length RIOK2 (M1 to D313 residues) expressed in mammalian expression system assessed as dissociation constant by KINOMEscan assay | kd | 0.8100 | uM |
| 1-[4-piperazin-1-yl-3-(trifluoromethyl)phenyl]-8-pyridin-3-yl-5H-triazolo[4,5-c]quinolin-4-one | 1910807: Binding affinity to wild-type human partial length RIOK2 (M1 to D313 residues) expressed in mammalian expression system assessed as dissociation constant by KINOMEscan assay | kd | 0.8400 | uM |
| 2-[4-[(1E)-1-hydroxyimino-2,3-dihydroinden-5-yl]-3-pyridin-4-ylpyrazol-1-yl]ethanol | 625111: Binding constant for RIOK2 kinase domain | kd | 1.2000 | uM |
| Ruxolitinib | 625111: Binding constant for RIOK2 kinase domain | kd | 1.2000 | uM |
| 3-[2,4-diamino-7-(3-hydroxyphenyl)pteridin-6-yl]phenol | 625111: Binding constant for RIOK2 kinase domain | kd | 1.5000 | uM |
| N-[5-[(5-tert-butyl-1,3-oxazol-2-yl)methylsulfanyl]-1,3-thiazol-2-yl]piperidine-4-carboxamide | 625111: Binding constant for RIOK2 kinase domain | kd | 1.5000 | uM |
| 4-[(4-methylpiperazin-1-yl)methyl]-N-[4-methyl-3-[(4-pyridin-3-yl-1,3-thiazol-2-yl)amino]phenyl]benzamide | 625111: Binding constant for RIOK2 kinase domain | kd | 1.7000 | uM |
| 2-[[2-[[1-[2-(dimethylamino)acetyl]-5-methoxy-2,3-dihydroindol-6-yl]amino]-7H-pyrrolo[2,3-d]pyrimidin-4-yl]amino]-6-fluoro-N-methylbenzamide | 625111: Binding constant for RIOK2 kinase domain | kd | 2.0000 | uM |
| N-[[2-methyl-4-[2-[(1-methylpyrazol-4-yl)amino]pyrimidin-4-yl]phenyl]methyl]-3-propan-2-yloxyazetidine-1-carboxamide | 1696278: Binding affinity to wild-type human partial length RIOK2 (M1 to D313 residues) expressed in mammalian expression system by Kinomescan method | kd | 2.4000 | uM |
| Fedratinib | 625111: Binding constant for RIOK2 kinase domain | kd | 2.6000 | uM |
| 6-[[5-fluoro-2-(3,4,5-trimethoxyanilino)pyrimidin-4-yl]amino]-2,2-dimethyl-4H-pyrido[3,2-b][1,4]oxazin-3-one | 625111: Binding constant for RIOK2 kinase domain | kd | 3.4000 | uM |
| [4-[(E)-2-(1H-indazol-3-yl)ethenyl]phenyl]-piperazin-1-ylmethanone | 625111: Binding constant for RIOK2 kinase domain | kd | 5.0000 | uM |
| N-(4-chloro-2-pyridinyl)-2-naphthalen-2-ylacetamide | 1685587: Displacement of tracer K5 from N-terminal nanoluciferase-tagged RIOK2 (unknown origin) expressed in HEK293 cells measured after 2 hrs by NanoBRET assay | ic50 | 5.0000 | uM |
| N-(4-methoxy-2-pyridinyl)-2-naphthalen-2-ylacetamide | 1685587: Displacement of tracer K5 from N-terminal nanoluciferase-tagged RIOK2 (unknown origin) expressed in HEK293 cells measured after 2 hrs by NanoBRET assay | ic50 | 5.2000 | uM |
CTD chemical–gene interactions
42 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Tobacco Smoke Pollution | increases expression | 2 |
| Cadmium Chloride | decreases expression | 2 |
| 3-((6-(2-methoxyphenyl)pyrimidin-4-yl)amino)phenyl)methane sulfonamide | decreases expression | 1 |
| FR900359 | affects phosphorylation | 1 |
| bisphenol F | affects cotreatment, increases expression | 1 |
| dicrotophos | decreases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| methylparaben | decreases expression | 1 |
| sodium arsenite | affects cotreatment, increases abundance, increases expression | 1 |
| zinc chromate | increases abundance, increases expression | 1 |
| manganese chloride | increases expression, affects cotreatment, increases abundance | 1 |
| hydroquinone | decreases expression | 1 |
| beta-methylcholine | affects expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| chromium hexavalent ion | increases abundance, increases expression | 1 |
| perfluorooctane sulfonic acid | increases expression | 1 |
| abrine | increases expression | 1 |
| jinfukang | decreases expression | 1 |
| MT19c compound | increases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Temozolomide | increases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
| Arsenic | affects cotreatment, increases abundance, increases expression | 1 |
| Benzo(a)pyrene | affects methylation, increases methylation | 1 |
| Caffeine | decreases phosphorylation | 1 |
| Dexamethasone | affects cotreatment, increases expression | 1 |
| Dimethyl Sulfoxide | increases expression | 1 |
| Formaldehyde | decreases expression | 1 |
ChEMBL screening assays
156 unique, capped per target: 156 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1052945 | Binding | Inhibition of RIOK2 assessed as enzyme activity at 1 uM relative to untreated control | Selective inhibitors of the mutant B-Raf pathway: discovery of a potent and orally bioavailable aminoisoquinoline. — J Med Chem |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.