RMND5B
gene geneOn this page
Also known as FLJ22318GID2GID2B
Summary
RMND5B (required for meiotic nuclear division 5 homolog B, HGNC:26181) is a protein-coding gene on chromosome 5q35.3, encoding E3 ubiquitin-protein transferase RMND5B (Q96G75). Core component of the CTLH E3 ubiquitin-protein ligase complex that selectively accepts ubiquitin from UBE2H and mediates ubiquitination and subsequent proteasomal degradation of the transcription factor HBP1.
Predicted to enable ubiquitin protein ligase activity and zinc ion binding activity. Predicted to contribute to ubiquitin-protein transferase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Located in cytosol.
Source: NCBI Gene 64777 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 86 total
- MANE Select transcript:
NM_022762
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:26181 |
| Approved symbol | RMND5B |
| Name | required for meiotic nuclear division 5 homolog B |
| Location | 5q35.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ22318, GID2, GID2B |
| Ensembl gene | ENSG00000145916 |
| Ensembl biotype | protein_coding |
| Entrez | 64777 |
Gene structure
Transcript identifiers
Ensembl transcripts: 45 — 39 protein_coding, 4 retained_intron, 2 nonsense_mediated_decay
ENST00000313386, ENST00000502814, ENST00000507457, ENST00000507575, ENST00000507937, ENST00000508647, ENST00000512663, ENST00000512811, ENST00000513162, ENST00000515098, ENST00000515360, ENST00000542098, ENST00000890008, ENST00000890009, ENST00000890010, ENST00000890011, ENST00000890012, ENST00000890013, ENST00000890014, ENST00000890015, ENST00000890016, ENST00000890017, ENST00000890018, ENST00000890019, ENST00000890020, ENST00000940695, ENST00000940696, ENST00000940697, ENST00000940698, ENST00000940699, ENST00000940700, ENST00000940701, ENST00000940702, ENST00000940703, ENST00000940704, ENST00000949843, ENST00000949844, ENST00000949845, ENST00000949846, ENST00000949847, ENST00000949848, ENST00000949849, ENST00000949850, ENST00000949851, ENST00000949852
RefSeq mRNA: 3 — MANE Select: NM_022762
NM_001288794, NM_001288795, NM_022762
CCDS: CCDS4431, CCDS75382
Canonical transcript exons
ENST00000313386 — 11 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001021501 | 178131237 | 178131376 |
| ENSE00001369432 | 178147969 | 178150568 |
| ENSE00002024404 | 178131014 | 178131054 |
| ENSE00003481209 | 178143627 | 178143727 |
| ENSE00003485257 | 178146114 | 178146279 |
| ENSE00003491258 | 178142852 | 178142992 |
| ENSE00003565715 | 178142583 | 178142728 |
| ENSE00003577204 | 178143942 | 178144108 |
| ENSE00003577478 | 178138108 | 178138258 |
| ENSE00003598669 | 178147533 | 178147635 |
| ENSE00003686173 | 178147729 | 178147883 |
Expression profiles
Bgee: expression breadth ubiquitous, 273 present calls, max score 97.63.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 9.5374 / max 135.7269, expressed in 1759 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 60517 | 8.0904 | 1748 |
| 60518 | 1.0944 | 527 |
| 60519 | 0.3525 | 162 |
Top tissues by expression
286 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| lower esophagus mucosa | UBERON:0035834 | 97.63 | gold quality |
| left testis | UBERON:0004533 | 97.06 | gold quality |
| right testis | UBERON:0004534 | 96.90 | gold quality |
| esophagus mucosa | UBERON:0002469 | 95.67 | gold quality |
| testis | UBERON:0000473 | 94.83 | gold quality |
| apex of heart | UBERON:0002098 | 94.00 | gold quality |
| esophagus | UBERON:0001043 | 93.64 | gold quality |
| gastrocnemius | UBERON:0001388 | 93.04 | gold quality |
| muscle of leg | UBERON:0001383 | 92.42 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 91.85 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 91.72 | gold quality |
| lower esophagus | UBERON:0013473 | 91.49 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 91.47 | gold quality |
| prefrontal cortex | UBERON:0000451 | 91.26 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 91.09 | gold quality |
| skin of leg | UBERON:0001511 | 91.05 | gold quality |
| adenohypophysis | UBERON:0002196 | 91.04 | gold quality |
| ectocervix | UBERON:0012249 | 91.02 | gold quality |
| popliteal artery | UBERON:0002250 | 91.01 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 91.01 | gold quality |
| tibial artery | UBERON:0007610 | 91.00 | gold quality |
| thoracic aorta | UBERON:0001515 | 90.98 | gold quality |
| ascending aorta | UBERON:0001496 | 90.96 | gold quality |
| aorta | UBERON:0000947 | 90.92 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 90.91 | gold quality |
| right adrenal gland | UBERON:0001233 | 90.90 | gold quality |
| body of stomach | UBERON:0001161 | 90.82 | gold quality |
| skin of abdomen | UBERON:0001416 | 90.80 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 90.73 | gold quality |
| right frontal lobe | UBERON:0002810 | 90.65 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 5.28 |
| E-CURD-112 | yes | 3.73 |
| E-GEOD-86618 | no | 87.57 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
26 targeting RMND5B, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-7106-5P | 99.53 | 67.47 | 3574 |
| HSA-MIR-7159-5P | 99.53 | 72.12 | 2472 |
| HSA-MIR-4284 | 99.36 | 65.25 | 1293 |
| HSA-MIR-485-5P | 99.10 | 64.78 | 1889 |
| HSA-MIR-6884-5P | 99.10 | 64.50 | 1987 |
| HSA-MIR-4651 | 99.06 | 67.57 | 2002 |
| HSA-MIR-6770-5P | 98.97 | 66.76 | 1853 |
| HSA-MIR-3154 | 98.94 | 66.55 | 1455 |
| HSA-MIR-608 | 98.93 | 67.83 | 2013 |
| HSA-MIR-181A-2-3P | 98.91 | 67.60 | 1168 |
| HSA-MIR-4755-3P | 98.77 | 65.59 | 1915 |
| HSA-MIR-4436B-3P | 98.25 | 65.26 | 1494 |
| HSA-MIR-6735-5P | 98.24 | 65.36 | 1488 |
| HSA-MIR-6771-3P | 98.20 | 66.53 | 971 |
| HSA-MIR-1233-5P | 98.19 | 66.71 | 1201 |
| HSA-MIR-6778-5P | 98.19 | 66.59 | 1239 |
| HSA-MIR-7843-5P | 98.12 | 65.26 | 1421 |
| HSA-MIR-4632-5P | 97.82 | 65.38 | 1470 |
| HSA-MIR-6879-5P | 97.77 | 65.52 | 1521 |
| HSA-MIR-4287 | 97.55 | 67.24 | 1247 |
| HSA-MIR-4685-3P | 97.55 | 67.35 | 1255 |
| HSA-MIR-5089-3P | 97.50 | 67.82 | 758 |
| HSA-MIR-194-3P | 97.36 | 65.96 | 1027 |
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | rmnd5b | ENSDARG00000043359 |
| mus_musculus | Rmnd5b | ENSMUSG00000001054 |
| rattus_norvegicus | Rmnd5b | ENSRNOG00000047396 |
| drosophila_melanogaster | Sou | FBGN0034573 |
| caenorhabditis_elegans | WBGENE00020301 |
Paralogs (2): MAEA (ENSG00000090316), RMND5A (ENSG00000153561)
Protein
Protein identifiers
E3 ubiquitin-protein transferase RMND5B — Q96G75 (reviewed: Q96G75)
Alternative names: Protein RMD5 homolog B
All UniProt accessions (7): D6R9A2, D6RER3, D6RFE6, D6RFK1, Q96G75, D6RIF9, F5H6G4
UniProt curated annotations — full annotation on UniProt →
Function. Core component of the CTLH E3 ubiquitin-protein ligase complex that selectively accepts ubiquitin from UBE2H and mediates ubiquitination and subsequent proteasomal degradation of the transcription factor HBP1. MAEA and RMND5A are both required for catalytic activity of the CTLH E3 ubiquitin-protein ligase complex. Catalytic activity of the complex is required for normal cell proliferation. The CTLH E3 ubiquitin-protein ligase complex is not required for the degradation of enzymes involved in gluconeogenesis, such as FBP1.
Subunit / interactions. Identified in the CTLH complex that contains GID4, RANBP9 and/or RANBP10, MKLN1, MAEA, RMND5A (or alternatively its paralog RMND5B), GID8, ARMC8, WDR26 and YPEL5. Within this complex, MAEA, RMND5A (or alternatively its paralog RMND5B), GID8, WDR26, and RANBP9 and/or RANBP10 form the catalytic core, while GID4, MKLN1, ARMC8 and YPEL5 have ancillary roles.
Subcellular location. Cytoplasm. Cytosol.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q96G75-1 | 1 | yes |
| Q96G75-2 | 2 |
RefSeq proteins (3): NP_001275723, NP_001275724, NP_073599* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR006594 | LisH | Conserved_site |
| IPR006595 | CTLH_C | Domain |
| IPR013144 | CRA_dom | Domain |
| IPR024964 | CTLH/CRA | Domain |
| IPR027370 | Znf-RING_euk | Domain |
| IPR037681 | RMD5B_dRING | Domain |
| IPR044063 | ZF_RING_GID | Domain |
| IPR045098 | Fyv10_fam | Family |
Pfam: PF10607, PF13445
UniProt features (6 total): domain 2, chain 1, zinc finger region 1, modified residue 1, splice variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96G75-F1 | 90.58 | 0.69 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 1
Function
Pathways and Gene Ontology
Reactome pathways
4 pathways
| ID | Pathway |
|---|---|
| R-HSA-9861718 | Regulation of pyruvate metabolism |
| R-HSA-1428517 | Aerobic respiration and respiratory electron transport |
| R-HSA-1430728 | Metabolism |
| R-HSA-70268 | Pyruvate metabolism |
MSigDB gene sets: 165 (showing top):
STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, MARTINEZ_RB1_TARGETS_UP, MUELLER_PLURINET, GCM_DDX11, DOUGLAS_BMI1_TARGETS_DN, NRF2_01, GCM_NF2, GOBP_PROTEASOMAL_PROTEIN_CATABOLIC_PROCESS, GOBP_PROTEIN_CATABOLIC_PROCESS, GOCC_TRANSFERASE_COMPLEX, REACTOME_PYRUVATE_METABOLISM, CHARAFE_BREAST_CANCER_LUMINAL_VS_MESENCHYMAL_UP, MARSON_BOUND_BY_FOXP3_UNSTIMULATED, GOBP_PROTEOLYSIS
GO Biological Process (1): proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161)
GO Molecular Function (6): zinc ion binding (GO:0008270), ubiquitin protein ligase activity (GO:0061630), ubiquitin-protein transferase activity (GO:0004842), protein binding (GO:0005515), transferase activity (GO:0016740), metal ion binding (GO:0046872)
GO Cellular Component (4): nucleus (GO:0005634), cytoplasm (GO:0005737), cytosol (GO:0005829), GID complex (GO:0034657)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| Pyruvate metabolism | 1 |
| Metabolism | 1 |
| Aerobic respiration and respiratory electron transport | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| ubiquitin-dependent protein catabolic process | 1 |
| proteasomal protein catabolic process | 1 |
| transition metal ion binding | 1 |
| ubiquitin-protein transferase activity | 1 |
| ubiquitin-like protein ligase activity | 1 |
| ubiquitin-like protein transferase activity | 1 |
| binding | 1 |
| catalytic activity | 1 |
| cation binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| ubiquitin ligase complex | 1 |
Protein interactions and networks
STRING
518 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RMND5B | ARMC8 | Q8IUR7 | 894 |
| RMND5B | GID4 | Q8IVV7 | 840 |
| RMND5B | WDR26 | Q9H7D7 | 836 |
| RMND5B | GID8 | Q9NWU2 | 776 |
| RMND5B | RANBP10 | Q6VN20 | 716 |
| RMND5B | YPEL5 | P62699 | 676 |
| RMND5B | MKLN1 | Q9UL63 | 665 |
| RMND5B | UBE2H | P37286 | 645 |
| RMND5B | MAEA | Q7L5Y9 | 577 |
| RMND5B | RANBP9 | Q96S59 | 569 |
| RMND5B | UBE2D2 | P51669 | 554 |
| RMND5B | SCFD1 | Q8WVM8 | 534 |
| RMND5B | RNF150 | Q9ULK6 | 514 |
| RMND5B | TACC2 | O95359 | 447 |
| RMND5B | ZMYND19 | Q96E35 | 424 |
IntAct
74 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ARMC8 | HTRA2 | psi-mi:“MI:0914”(association) | 0.750 |
| CRIPTO | AIP | psi-mi:“MI:0914”(association) | 0.640 |
| CCDC120 | AIP | psi-mi:“MI:0914”(association) | 0.640 |
| GID8 | HTRA2 | psi-mi:“MI:0914”(association) | 0.610 |
| RMND5B | SPRED1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TARDBP | RMND5B | psi-mi:“MI:0915”(physical association) | 0.560 |
| PRG3 | ZNF324 | psi-mi:“MI:0914”(association) | 0.530 |
| PIGT | ZNF609 | psi-mi:“MI:0914”(association) | 0.530 |
| BMP1 | TLL1 | psi-mi:“MI:0914”(association) | 0.530 |
| EMILIN3 | ZZEF1 | psi-mi:“MI:0914”(association) | 0.530 |
| MRPL18 | GTPBP10 | psi-mi:“MI:0914”(association) | 0.530 |
| INSL6 | MYCBP2 | psi-mi:“MI:0914”(association) | 0.530 |
| GNLY | YPEL5 | psi-mi:“MI:0914”(association) | 0.530 |
| MAEA | HTRA2 | psi-mi:“MI:0914”(association) | 0.510 |
| RMND5B | PSMA7 | psi-mi:“MI:0914”(association) | 0.510 |
| RMND5B | UBE2D2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| RMND5B | UBE2D3 | psi-mi:“MI:0915”(physical association) | 0.370 |
| UBE2D4 | RMND5B | psi-mi:“MI:0915”(physical association) | 0.370 |
| UBE2E1 | RMND5B | psi-mi:“MI:0915”(physical association) | 0.370 |
| UBE2E3 | RMND5B | psi-mi:“MI:0915”(physical association) | 0.370 |
| RMND5B | UBE2W | psi-mi:“MI:0915”(physical association) | 0.370 |
| RMND5B | CDK9 | psi-mi:“MI:0915”(physical association) | 0.370 |
| SMAD4 | RMND5B | psi-mi:“MI:0915”(physical association) | 0.370 |
BioGRID (63): RMND5B (Affinity Capture-MS), RMND5B (Two-hybrid), RMND5B (Affinity Capture-MS), RMND5B (Affinity Capture-MS), RMND5B (Affinity Capture-MS), RMND5B (Affinity Capture-MS), RMND5B (Affinity Capture-MS), MAEA (Affinity Capture-MS), ARMC8 (Affinity Capture-MS), PGRMC2 (Affinity Capture-MS), YPEL5 (Affinity Capture-MS), RANBP9 (Affinity Capture-MS), WDR26 (Affinity Capture-MS), PSMD6 (Affinity Capture-MS), UCK2 (Affinity Capture-MS)
ESM2 similar proteins: A2AWP8, A2RSQ0, A5PJM7, A6QL63, D4ABL6, E9PTA2, F1LTE0, O60941, O94759, P42229, P42231, P84060, Q29RM4, Q32PF0, Q3UFK8, Q3UMR5, Q4R4U1, Q4V8I4, Q5R5F8, Q5R5M3, Q5T6S3, Q5ZJA4, Q68FF6, Q6DDJ3, Q6DFV5, Q6DJB3, Q6GQW0, Q6ZN54, Q6ZPY2, Q6ZUT9, Q7T0P6, Q7Z6G3, Q8CIQ7, Q8CIW5, Q8IZD9, Q8TBP0, Q8VCX6, Q91YD4, Q923S8, Q96G75
Diamond homologs: Q640V2, Q6GLP4, Q80YQ8, Q91YQ7, Q96G75, Q9H871, Q9T075, O59668, Q11072
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| Ub:E2 | “up-regulates activity” | RMND5B | ubiquitination |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 70 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Regulation of pyruvate metabolism | 7 | 75.4× | 8e-10 |
| Synthesis of active ubiquitin: roles of E1 and E2 enzymes | 5 | 34.8× | 5e-05 |
| Antigen processing: Ubiquitination & Proteasome degradation | 10 | 7.0× | 1e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| protein K11-linked ubiquitination | 5 | 29.2× | 1e-04 |
| protein K48-linked ubiquitination | 7 | 17.6× | 3e-05 |
| protein polyubiquitination | 6 | 10.3× | 2e-03 |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 11 | 8.6× | 3e-05 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
86 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 67 |
| Likely benign | 4 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1702 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 5:178131363:TCGG:T | donor_gain | 1.0000 |
| 5:178131366:G:GT | donor_gain | 1.0000 |
| 5:178142989:CCAGG:C | donor_loss | 1.0000 |
| 5:178142990:CAGG:C | donor_loss | 1.0000 |
| 5:178142991:AGGTA:A | donor_loss | 1.0000 |
| 5:178142993:GTAC:G | donor_loss | 1.0000 |
| 5:178142994:T:A | donor_loss | 1.0000 |
| 5:178143622:TGTAG:T | acceptor_loss | 1.0000 |
| 5:178143623:GTAGG:G | acceptor_loss | 1.0000 |
| 5:178143624:TAGG:T | acceptor_loss | 1.0000 |
| 5:178143625:AGG:A | acceptor_loss | 1.0000 |
| 5:178143690:G:GT | donor_gain | 1.0000 |
| 5:178143725:GGA:G | donor_gain | 1.0000 |
| 5:178143726:GA:G | donor_gain | 1.0000 |
| 5:178143726:GAG:G | donor_gain | 1.0000 |
| 5:178143728:G:GG | donor_gain | 1.0000 |
| 5:178143733:G:GT | donor_gain | 1.0000 |
| 5:178143940:A:AG | acceptor_gain | 1.0000 |
| 5:178143940:AGAT:A | acceptor_gain | 1.0000 |
| 5:178143940:AGATG:A | acceptor_gain | 1.0000 |
| 5:178143941:G:GG | acceptor_gain | 1.0000 |
| 5:178143941:GA:G | acceptor_gain | 1.0000 |
| 5:178143941:GAT:G | acceptor_gain | 1.0000 |
| 5:178143941:GATG:G | acceptor_gain | 1.0000 |
| 5:178143941:GATGG:G | acceptor_gain | 1.0000 |
| 5:178144065:C:G | donor_gain | 1.0000 |
| 5:178144104:GCGGG:G | donor_gain | 1.0000 |
| 5:178144106:GGG:G | donor_gain | 1.0000 |
| 5:178144106:GGGGT:G | donor_loss | 1.0000 |
| 5:178144107:GG:G | donor_gain | 1.0000 |
AlphaMissense
2561 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 5:178147777:T:C | C338R | 1.000 |
| 5:178147778:G:A | C338Y | 1.000 |
| 5:178147779:C:G | C338W | 1.000 |
| 5:178147784:T:A | I340N | 1.000 |
| 5:178147784:T:C | I340T | 1.000 |
| 5:178147789:C:A | R342S | 1.000 |
| 5:178147817:C:A | P351H | 1.000 |
| 5:178147826:T:C | L354P | 1.000 |
| 5:178147831:T:C | C356R | 1.000 |
| 5:178147832:G:A | C356Y | 1.000 |
| 5:178147837:C:G | H358D | 1.000 |
| 5:178147839:T:A | H358Q | 1.000 |
| 5:178147839:T:G | H358Q | 1.000 |
| 5:178147844:T:A | I360N | 1.000 |
| 5:178147847:C:T | S361F | 1.000 |
| 5:178147973:A:G | K375E | 1.000 |
| 5:178147975:G:C | K375N | 1.000 |
| 5:178147975:G:T | K375N | 1.000 |
| 5:178147976:T:A | C376S | 1.000 |
| 5:178147976:T:C | C376R | 1.000 |
| 5:178147977:G:C | C376S | 1.000 |
| 5:178147985:T:C | C379R | 1.000 |
| 5:178142683:G:C | K80N | 0.999 |
| 5:178142683:G:T | K80N | 0.999 |
| 5:178142714:A:G | K91E | 0.999 |
| 5:178142716:A:C | K91N | 0.999 |
| 5:178142716:A:T | K91N | 0.999 |
| 5:178142949:T:C | L128P | 0.999 |
| 5:178143943:T:A | W177R | 0.999 |
| 5:178143943:T:C | W177R | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000026529 (5:178138604 T>C), RS1000054862 (5:178137509 G>C), RS1000097282 (5:178144980 T>G), RS1000122032 (5:178131046 C>A,T), RS1000179599 (5:178132041 G>A), RS1000188177 (5:178150382 CTATT>C), RS1000223143 (5:178147620 C>T), RS1000430064 (5:178130838 G>A), RS1000634453 (5:178144677 C>T), RS1000904262 (5:178143764 T>A,C), RS1000963791 (5:178137206 G>A,C), RS1001022910 (5:178140214 C>A,T), RS1001225827 (5:178146471 G>A), RS1001229689 (5:178146129 T>C), RS1001236970 (5:178133464 T>G)
Disease associations
OMIM: gene `` | disease phenotypes: MIM:127550, MIM:224230, MIM:613987
GenCC curated gene-disease
Mondo (3): dyskeratosis congenita (MONDO:0015780), dyskeratosis congenita, autosomal recessive 1 (MONDO:0009136), dyskeratosis congenita, autosomal recessive 2 (MONDO:0013519)
Orphanet (1): Dyskeratosis congenita (Orphanet:1775)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D019871 | Dyskeratosis Congenita | C15.378.190.223.500.750; C16.131.831.150; C16.320.322.108; C16.320.850.235; C17.800.804.150; C17.800.827.235 |
| C565611 | Dyskeratosis Congenita, Autosomal Recessive (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
23 total (human), top 23 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Arsenic | affects methylation, affects cotreatment, decreases expression, increases abundance | 2 |
| Cyclosporine | increases expression | 2 |
| GSK-J4 | decreases expression | 1 |
| sodium arsenite | increases abundance, affects cotreatment, decreases expression | 1 |
| manganese chloride | decreases expression, increases abundance, affects cotreatment | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| methacrylaldehyde | affects cotreatment, decreases expression | 1 |
| epigallocatechin gallate | decreases expression, affects cotreatment | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| Acrolein | affects cotreatment, decreases expression | 1 |
| Calcitriol | increases expression | 1 |
| Estradiol | affects cotreatment, decreases expression | 1 |
| Hydralazine | affects cotreatment, increases expression | 1 |
| Manganese | increases abundance, affects cotreatment, decreases expression | 1 |
| Ozone | affects cotreatment, decreases expression | 1 |
| Smoke | decreases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Valproic Acid | affects cotreatment, increases expression | 1 |
| Copper Sulfate | decreases expression | 1 |
| Lactic Acid | decreases expression | 1 |
| Acrylamide | decreases expression | 1 |
| tert-Butylhydroperoxide | decreases expression | 1 |
Cellosaurus cell lines
1 cell lines: 1 embryonic stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D8G7 | Ubigene H1 RMND5B KO | Embryonic stem cell | Male |
Clinical trials (associated diseases)
18 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00004787 | PHASE2 | COMPLETED | Phase II Pilot Study of Granulocyte Colony-Stimulating Factor for Inherited Bone Marrow Failure Syndromes |
| NCT01659606 | PHASE2 | ACTIVE_NOT_RECRUITING | Radiation- and Alkylator-free Bone Marrow Transplantation Regimen for Patients With Dyskeratosis Congenita |
| NCT03579875 | PHASE2 | RECRUITING | Alpha/Beta TCD HCT in Patients With Inherited BMF Disorders |
| NCT04232085 | PHASE2 | RECRUITING | Regenerative Medicine to Restore Hematopoiesis and Immune Function in Immunodeficiencies and Inherited Bone Marrow Failures |
| NCT04638517 | PHASE2 | TERMINATED | The TELO-SCOPE Study: Attenuating Telomere Attrition With Danazol. Is There Scope to Dramatically Improve Health Outcomes for Adults and Children With Pulmonary Fibrosis |
| NCT01917708 | PHASE1 | COMPLETED | Bone Marrow Transplant With Abatacept for Non-Malignant Diseases |
| NCT06477614 | PHASE1 | RECRUITING | Anti-cancer DC Cell Vaccination to Treat Solid Tumors |
| NCT06817590 | PHASE1 | RECRUITING | Nucleoside Therapy in Patients With Telomere Biology Disorders |
| NCT00455312 | PHASE2/PHASE3 | COMPLETED | Stem Cell Transplant (SCT) for Dyskeratosis Congenita or SAA |
| NCT01001598 | PHASE1/PHASE2 | TERMINATED | Safety and Efficacy Trial of Danazol in Patients With Fanconi Anemia or Dyskeratosis Congenita |
| NCT00027274 | Not specified | RECRUITING | Cancer in Inherited Bone Marrow Failure Syndromes |
| NCT00499070 | Not specified | COMPLETED | Assessing Immune Function in Young Patients With Cytopenia That Did Not Respond to Treatment |
| NCT01319851 | Not specified | TERMINATED | Alefacept and Allogeneic Hematopoietic Stem Cell Transplantation |
| NCT02162420 | Not specified | COMPLETED | Hematopoietic Stem Cell Transplant for Dyskeratosis Congenita or Severe Aplastic Anemia |
| NCT02720679 | Not specified | RECRUITING | Investigation of the Genetics of Hematologic Diseases |
| NCT03050268 | Not specified | RECRUITING | Familial Investigations of Childhood Cancer Predisposition |
| NCT04959188 | Not specified | COMPLETED | Needs Assessment for Individuals and Families Affected by Dyskeratosis Congenita (DC) and Related Telomere Biology Disorders (TBD) |
| NCT06731036 | Not specified | AVAILABLE | Expanded Access to CD34+ Selection Utilizing Miltenyi CliniMACS Prodigy® for Patients Receiving Peripheral Blood Stem Cell Transplantations and Stem Cell Boosts |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): dyskeratosis congenita, dyskeratosis congenita, autosomal recessive 1, dyskeratosis congenita, autosomal recessive 2