RNASE7
gene geneOn this page
Also known as RAE1
Summary
RNASE7 (ribonuclease A family member 7, HGNC:19278) is a protein-coding gene on chromosome 14q11.2, encoding Ribonuclease 7 (Q9H1E1). Exhibits a potent RNase activity.
The protein encoded by this gene belongs to the pancreatic ribonuclease family, a subset of the ribonuclease A superfamily. The protein has broad-spectrum antimicrobial activity against bacteria and fungi.
Source: NCBI Gene 84659 — RefSeq curated summary.
At a glance
- MANE Select transcript:
NM_032572
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:19278 |
| Approved symbol | RNASE7 |
| Name | ribonuclease A family member 7 |
| Location | 14q11.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | RAE1 |
| Ensembl gene | ENSG00000165799 |
| Ensembl biotype | protein_coding |
| OMIM | 612484 |
| Entrez | 84659 |
Gene structure
Transcript identifiers
Ensembl transcripts: 2 — 1 protein_coding, 1 nonsense_mediated_decay
ENST00000298690, ENST00000481538
RefSeq mRNA: 1 — MANE Select: NM_032572
NM_032572
CCDS: CCDS41914
Canonical transcript exons
ENST00000298690 — 2 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001096676 | 21042953 | 21044233 |
| ENSE00001309496 | 21042362 | 21042442 |
Expression profiles
Bgee: expression breadth ubiquitous, 107 present calls, max score 91.56.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 1.5228 / max 152.9456, expressed in 96 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 138501 | 1.0283 | 87 |
| 138499 | 0.2514 | 65 |
| 138500 | 0.2022 | 59 |
| 138498 | 0.0408 | 26 |
Top tissues by expression
226 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| upper arm skin | UBERON:0004263 | 91.56 | gold quality |
| amniotic fluid | UBERON:0000173 | 86.69 | gold quality |
| gall bladder | UBERON:0002110 | 81.64 | gold quality |
| skin of leg | UBERON:0001511 | 81.21 | gold quality |
| oral cavity | UBERON:0000167 | 81.01 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 80.89 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 78.42 | gold quality |
| zone of skin | UBERON:0000014 | 76.78 | gold quality |
| buccal mucosa cell | CL:0002336 | 75.76 | gold quality |
| esophagus mucosa | UBERON:0002469 | 73.92 | gold quality |
| skin of abdomen | UBERON:0001416 | 71.03 | gold quality |
| tonsil | UBERON:0002372 | 65.72 | gold quality |
| islet of Langerhans | UBERON:0000006 | 64.69 | gold quality |
| minor salivary gland | UBERON:0001830 | 63.29 | gold quality |
| vagina | UBERON:0000996 | 62.91 | gold quality |
| penis | UBERON:0000989 | 62.87 | gold quality |
| mouth mucosa | UBERON:0003729 | 62.75 | gold quality |
| upper leg skin | UBERON:0004262 | 61.78 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 61.41 | gold quality |
| pancreatic ductal cell | CL:0002079 | 60.22 | silver quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 59.47 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 57.99 | gold quality |
| esophagus | UBERON:0001043 | 57.70 | gold quality |
| right lobe of liver | UBERON:0001114 | 56.95 | gold quality |
| tibialis anterior | UBERON:0001385 | 56.95 | silver quality |
| rectum | UBERON:0001052 | 55.82 | gold quality |
| pancreas | UBERON:0001264 | 55.10 | gold quality |
| mammalian vulva | UBERON:0000997 | 54.95 | silver quality |
| epithelial cell of pancreas | CL:0000083 | 54.68 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 54.34 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 2.29 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
38 targeting RNASE7, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6758-5P | 100.00 | 66.21 | 1470 |
| HSA-MIR-6856-5P | 100.00 | 65.47 | 1298 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-4725-3P | 99.96 | 69.53 | 2520 |
| HSA-MIR-6780B-5P | 99.96 | 69.60 | 2562 |
| HSA-MIR-6772-5P | 99.94 | 67.01 | 577 |
| HSA-MIR-4760-3P | 99.93 | 70.50 | 2385 |
| HSA-MIR-4271 | 99.88 | 68.32 | 2244 |
| HSA-MIR-4517 | 99.76 | 69.19 | 1867 |
| HSA-MIR-4320 | 99.75 | 65.80 | 793 |
| HSA-MIR-3059-5P | 99.70 | 69.93 | 2491 |
| HSA-MIR-1284 | 99.67 | 73.56 | 1353 |
| HSA-MIR-3120-3P | 99.54 | 70.28 | 2669 |
| HSA-MIR-6505-3P | 99.34 | 67.39 | 1071 |
| HSA-MIR-4795-5P | 99.11 | 66.90 | 876 |
| HSA-MIR-4254 | 99.11 | 65.15 | 1315 |
| HSA-MIR-670-3P | 99.03 | 68.88 | 2404 |
| HSA-MIR-3124-3P | 98.87 | 68.95 | 2123 |
| HSA-MIR-873-5P | 98.84 | 66.90 | 1348 |
| HSA-MIR-4451 | 98.82 | 68.17 | 1455 |
| HSA-MIR-6501-3P | 98.71 | 67.45 | 1480 |
| HSA-MIR-6776-5P | 98.54 | 67.43 | 1304 |
| HSA-MIR-6873-5P | 98.45 | 66.14 | 1417 |
| HSA-MIR-6072 | 98.00 | 66.47 | 804 |
| HSA-MIR-204-3P | 97.80 | 66.84 | 1656 |
| HSA-MIR-7111-3P | 97.80 | 66.75 | 1467 |
| HSA-MIR-4646-5P | 97.70 | 66.84 | 1692 |
| HSA-MIR-4637 | 97.69 | 68.14 | 632 |
| HSA-MIR-8057 | 97.64 | 66.54 | 897 |
| HSA-MIR-3157-5P | 97.41 | 67.61 | 998 |
Literature-anchored findings (GeneRIF, showing 26)
- RNase 7 is an antimicrobial protein that plays an important role in the innate immune defense system of human epithelia. (PMID:12244054)
- proteases contribute indirectly to the defense function of the stratum corneum by releasing the RNase inhibitor mediated inhibition of RNase 5 and RNase 7. (PMID:19262607)
- Using phospholipid vesicles as membrane models, RNase 3 triggers first the vesicle aggregation, while RNase 7 induces leakage well before the aggregation step. (PMID:19366593)
- data indicate that RNase 7 contributes to the E. faecium-killing activity of skin extracts and suggest an important role for RNase 7 in the protection of human skin against E. faecium colonization (PMID:19641608)
- These findings suggest that antimicrobial peptides found at high baseline levels in healthy skin, such as RNase 7, confer protection against Staphylococcus aureus infection of the skin. (PMID:19919305)
- RNASE7 prevents staphylococcal skin infections (PMID:20668470)
- RNase 7 expression is increased in the urinary tract with infection and has antibacterial activity against uropathogens at micromolar concentrations. (PMID:23302724)
- a complex relationship between tear induction of miR-762, its modulation of innate defense genes, and P. aeruginosa internalization (PMID:23469087)
- Suggest that RNase 7 may function as antimicrobial peptide with a role in the differentiation and development of the primitive epidermis. (PMID:23545750)
- the influence of STAT3 on the IL-17A/IFN-gamma -mediated RNase 7 induction (PMID:23555696)
- Levels of psoriasin, RNase 7 and hBD-3 expression - assessed by immunohistochemistry - varied between different body localisations. (PMID:23614747)
- RNH1 bound to RNase 7 and suppressed its antimicrobial activity by blocking its ability to bind the cell wall of uropathogenic bacteria. (PMID:24107847)
- epidermal growth factor-dependent RNase 7 and human beta-defensin-3 expression upon infection with Trichophytum rubrum (PMID:24747887)
- This article provides an overview about the role of RNase 7 in cutaneous defense with focus on the molecular mechanism of the antimicrobial activity of RNase 7, the regulation of RNase 7 expression, and the role of RNase 7 in skin diseases. [review] (PMID:27089327)
- Insulin and PI3K/AKT signaling are essential for RNase 7 expression and increased infection risks in diabetic patients may be secondary to suppressed RNase 7 production. (PMID:27401534)
- Our results indicate that RNase 7 is an important factor released by keratinocytes to control the growth of P. aeruginosa on the skin surface. (PMID:27513608)
- RNase 7 has immunomodulatory functions on TH2 cells and decreases the production of TH2 cytokines in the skin. (PMID:28378334)
- RNase 7 may function as important effector molecule to control the growth of corynebacteria on human skin (PMID:29066761)
- RNase 7 exhibits potent immunomodulatory functions and supports the efficient recognition of microbial infections by human skin-infiltrating pDCs. (PMID:29157732)
- These data suggest that the induction of RNase 7 in response to Mycobacterium tuberculosis could have a role in anti-mycobacterial immunity. (PMID:29346642)
- RAE1 mediated ZEB1 expression promotes epithelial-mesenchymal transition in breast cancer. (PMID:30814639)
- RNase 7 has a role in kidney and bladder host defense against uropathogenic Escherichia coli (PMID:31239387)
- RNase 7 Promotes Sensing of Self-DNA by Human Keratinocytes and Activates an Antiviral Immune Response. (PMID:31978413)
- Involvement of RNase 7 in the malignant potential of oral squamous cell carcinoma cells. (PMID:32705284)
- Ribonuclease 7 polymorphism rs1263872 reduces antimicrobial activity and associates with pediatric urinary tract infections. (PMID:34779412)
- RNase 7 Inhibits Uropathogenic Escherichia coli-Induced Inflammation in Bladder Cells under a High-Glucose Environment by Regulating the JAK/STAT Signaling Pathway. (PMID:35563546)
Cross-species orthologs
0 orthologs
Paralogs (12): RNASE1 (ENSG00000129538), RNASE2 (ENSG00000169385), RNASE3 (ENSG00000169397), RNASE6 (ENSG00000169413), RNASE8 (ENSG00000173431), RNASE11 (ENSG00000173464), RNASE10 (ENSG00000182545), RNASE9 (ENSG00000188655), RNASE13 (ENSG00000206150), ANG (ENSG00000214274), RNASE12 (ENSG00000258436), RNASE4 (ENSG00000258818)
Protein
Protein identifiers
Ribonuclease 7 — Q9H1E1 (reviewed: Q9H1E1)
Alternative names: Skin-derived antimicrobial protein 2
All UniProt accessions (1): Q9H1E1
UniProt curated annotations — full annotation on UniProt →
Function. Exhibits a potent RNase activity. Has broad-spectrum antimicrobial activity against many pathogenic microorganisms including uropathogenic E.coli (UPEC), and remarkably potent activity (lethal dose of 90% < 30 nM) against a vancomycin resistant Enterococcus faecium. Causes loss of bacterial membrane integrity. Probably contributes to urinary tract sterility. Bactericidal activity is independent of RNase activity.
Subcellular location. Secreted.
Tissue specificity. Expressed in collecting ducts in kidney, and in apical uroepithelium in bladder (at protein level). Expressed in various epithelial tissues including skin, respiratory tract, genito-urinary tract and, at a low level, in the gut. Expressed in liver, kidney, skeletal muscle and heart.
Induction. Up-regulated in response to the cytokines IL1B, IFNG and TNF. Strongly up-regulated in response to the bacterium P.aeruginosa. Moderately up-regulated in response to S.aureus, E.coli and S.pyogenes. Up-regulated in kidney in response to infection.
Similarity. Belongs to the pancreatic ribonuclease family.
RefSeq proteins (1): NP_115961* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001427 | RNaseA | Family |
| IPR023411 | RNaseA_AS | Active_site |
| IPR023412 | RNaseA_domain | Domain |
| IPR036816 | RNaseA-like_dom_sf | Homologous_superfamily |
Pfam: PF00074
UniProt features (39 total): mutagenesis site 9, strand 7, binding site 6, disulfide bond 4, helix 3, sequence variant 2, region of interest 2, active site 2, signal peptide 1, chain 1, site 1, glycosylation site 1
Structure
Experimental structures (PDB)
3 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9CSM | X-RAY DIFFRACTION | 1.77 |
| 9CSN | X-RAY DIFFRACTION | 2.07 |
| 2HKY | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9H1E1-F1 | 90.87 | 0.82 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (3): 66 (critical for catalytic activity); 43 (proton acceptor); 151 (proton donor)
Ligand- & substrate-binding residues (6): 151; 154; 43; 66; 69; 70
Disulfide bonds (4): 51–109, 65–119, 83–134, 90–97
Glycosylation sites (1): 127
Mutagenesis-validated functional residues (9):
| Position | Phenotype |
|---|---|
| 29–32 | significant loss of bactericidal activity. no effect on catalytic activity. |
| 29 | slight loss of bactericidal activity. no effect on catalytic activity. |
| 31 | significant loss of bactericidal activity. no effect on catalytic activity. |
| 43 | loss of catalytic activity. no effect on bactericidal activity. |
| 60–63 | no significant effect on bactericidal activity or catalytic activity. |
| 66 | loss of catalytic activity. no effect on bactericidal activity. |
| 124–128 | no significant effect on bactericidal activity or catalytic activity. |
| 139–140 | moderate loss of bactericidal activity. no effect on catalytic activity. |
| 151 | loss of catalytic activity. no effect on bactericidal activity. |
Function
Pathways and Gene Ontology
Reactome pathways
3 pathways
| ID | Pathway |
|---|---|
| R-HSA-6803157 | Antimicrobial peptides |
| R-HSA-168249 | Innate Immune System |
| R-HSA-168256 | Immune System |
MSigDB gene sets: 247 (showing top):
GOBP_CHROMOSOME_ORGANIZATION, RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP, GOMF_ENDONUCLEASE_ACTIVITY, REACTOME_INTERACTIONS_OF_VPR_WITH_HOST_CELLULAR_PROTEINS, GOMF_RNA_NUCLEASE_ACTIVITY, REACTOME_INNATE_IMMUNE_SYSTEM, GOBP_ANTIMICROBIAL_HUMORAL_RESPONSE, GOBP_REGULATION_OF_MICROTUBULE_BASED_PROCESS, MORF_RAB5A, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOMF_NUCLEASE_ACTIVITY, ENK_UV_RESPONSE_KERATINOCYTE_UP, REACTOME_VIRAL_MESSENGER_RNA_SYNTHESIS, CHIANG_LIVER_CANCER_SUBCLASS_UNANNOTATED_DN, HEIDENBLAD_AMPLICON_8Q24_DN
GO Biological Process (8): antibacterial humoral response (GO:0019731), innate immune response (GO:0045087), defense response to Gram-negative bacterium (GO:0050829), defense response to Gram-positive bacterium (GO:0050830), defense response to fungus (GO:0050832), cytolysis in another organism (GO:0051715), antimicrobial humoral immune response mediated by antimicrobial peptide (GO:0061844), defense response to bacterium (GO:0042742)
GO Molecular Function (8): lipopolysaccharide binding (GO:0001530), nucleic acid binding (GO:0003676), endonuclease activity (GO:0004519), RNA nuclease activity (GO:0004540), hydrolase activity (GO:0016787), peptidoglycan binding (GO:0042834), nuclease activity (GO:0004518), protein binding (GO:0005515)
GO Cellular Component (3): extracellular region (GO:0005576), obsolete extracellular space (GO:0005615), cytoplasm (GO:0005737)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Innate Immune System | 1 |
| Immune System | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| defense response to bacterium | 3 |
| antimicrobial humoral response | 2 |
| defense response | 2 |
| binding | 2 |
| nuclease activity | 2 |
| cellular anatomical structure | 2 |
| immune response | 1 |
| defense response to symbiont | 1 |
| response to fungus | 1 |
| cytolysis | 1 |
| killing of cells of another organism | 1 |
| response to bacterium | 1 |
| lipid binding | 1 |
| carbohydrate derivative binding | 1 |
| catalytic activity, acting on RNA | 1 |
| catalytic activity | 1 |
| glycosaminoglycan binding | 1 |
| catalytic activity, acting on a nucleic acid | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
0 interactions, top by confidence (×1000):
IntAct
80 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PDIK1L | CTDSPL2 | psi-mi:“MI:0914”(association) | 0.840 |
| CCNC | MED19 | psi-mi:“MI:0914”(association) | 0.640 |
| ALDH3A1 | RCCD1 | psi-mi:“MI:0914”(association) | 0.640 |
| CFAP298 | PEX7 | psi-mi:“MI:0914”(association) | 0.620 |
| RNASE7 | RNH1 | psi-mi:“MI:0915”(physical association) | 0.590 |
| MORN3 | ALOXE3 | psi-mi:“MI:0914”(association) | 0.560 |
| ZSCAN12 | A2ML1 | psi-mi:“MI:0914”(association) | 0.530 |
| GMCL1 | A2ML1 | psi-mi:“MI:0914”(association) | 0.530 |
| TBC1D22B | A2ML1 | psi-mi:“MI:0914”(association) | 0.530 |
| DNAAF19 | KLK10 | psi-mi:“MI:0914”(association) | 0.530 |
| KIR3DS1 | PPL | psi-mi:“MI:0914”(association) | 0.530 |
| MMRN1 | CTSV | psi-mi:“MI:0914”(association) | 0.530 |
| DPPA4 | ALOX12B | psi-mi:“MI:0914”(association) | 0.530 |
| B3GALNT1 | DUSP14 | psi-mi:“MI:0914”(association) | 0.530 |
| MRPL38 | DUSP14 | psi-mi:“MI:0914”(association) | 0.530 |
| ZSWIM2 | SEMG1 | psi-mi:“MI:0914”(association) | 0.530 |
| DTL | DNAJA2 | psi-mi:“MI:0914”(association) | 0.530 |
| ZIC1 | CTSV | psi-mi:“MI:0914”(association) | 0.530 |
| MTHFD2L | MTHFD2 | psi-mi:“MI:0914”(association) | 0.530 |
| PI4KA | A2ML1 | psi-mi:“MI:0914”(association) | 0.350 |
| CDK15 | A2ML1 | psi-mi:“MI:0914”(association) | 0.350 |
| DDX19B | IGLL5 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (84): RNASE7 (Affinity Capture-MS), RNASE7 (Affinity Capture-MS), RNASE7 (Affinity Capture-MS), RNASE7 (Affinity Capture-MS), RNASE7 (Affinity Capture-MS), RNH1 (Affinity Capture-MS), RNASE7 (Affinity Capture-MS), RNASE7 (Affinity Capture-MS), RNASE7 (Affinity Capture-MS), RNASE7 (Affinity Capture-MS), RNASE7 (Affinity Capture-MS), RNASE7 (Affinity Capture-MS), RNASE7 (Affinity Capture-MS), RNASE7 (Affinity Capture-MS), RNASE7 (Affinity Capture-MS)
ESM2 similar proteins: A1YLB9, O46525, O46526, O46527, O46528, O46529, O46530, O46531, O46532, O46533, O46534, P00683, P00684, P08904, P39873, P61823, P81649, Q8SPN3, Q8SPN4, Q8SPZ4, Q8SPZ5, Q8SPZ6, Q8SPZ7, Q8SPZ8, Q8SQ04, Q8SQ05, Q8SQ06, Q8SQ08, Q8SQ11, Q8SQ12, Q8TDE3, Q8VD84, Q8VD87, Q8VD89, Q8VD93, Q93091, Q9D244, Q9H1E1, Q9QYX2, Q9QYX3
Diamond homologs: A1YLB9, B3EWJ0, O18937, O35290, O35291, O35292, O46525, O46526, O46527, O46528, O46529, O46530, O46531, O46532, O46533, O46534, O55004, P00657, P00680, P00682, P00685, P03950, P08904, P10153, P12724, P15466, P15467, P15468, P16414, P24717, P34096, P47778, P47779, P47780, P47781, P47782, P47783, P47784, P47785, P47786
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
0 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 0 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
2062 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 20:57351228:G:GT | donor_gain | 1.0000 |
| 20:57354026:TTTTA:T | acceptor_loss | 1.0000 |
| 20:57354027:TTTAG:T | acceptor_loss | 1.0000 |
| 20:57354028:TTAGG:T | acceptor_loss | 1.0000 |
| 20:57354029:TA:T | acceptor_loss | 1.0000 |
| 20:57354031:G:T | acceptor_loss | 1.0000 |
| 20:57354813:TGAT:T | donor_gain | 1.0000 |
| 20:57354814:GAT:G | donor_gain | 1.0000 |
| 20:57354814:GATG:G | donor_gain | 1.0000 |
| 20:57354816:TGTA:T | donor_loss | 1.0000 |
| 20:57354817:G:GG | donor_gain | 1.0000 |
| 20:57354817:GT:G | donor_loss | 1.0000 |
| 20:57354818:T:A | donor_loss | 1.0000 |
| 20:57354819:AAGT:A | donor_loss | 1.0000 |
| 20:57356435:T:A | acceptor_gain | 1.0000 |
| 20:57356443:CAGG:C | acceptor_loss | 1.0000 |
| 20:57356444:A:AC | acceptor_loss | 1.0000 |
| 20:57356534:GTGAC:G | donor_gain | 1.0000 |
| 20:57356535:TGACG:T | donor_loss | 1.0000 |
| 20:57356536:GAC:G | donor_gain | 1.0000 |
| 20:57356537:ACGTA:A | donor_loss | 1.0000 |
| 20:57356538:CG:C | donor_loss | 1.0000 |
| 20:57356539:G:GG | donor_gain | 1.0000 |
| 20:57356539:GTAC:G | donor_loss | 1.0000 |
| 20:57356540:T:G | donor_loss | 1.0000 |
| 20:57367006:A:AG | acceptor_gain | 1.0000 |
| 20:57367007:G:GG | acceptor_gain | 1.0000 |
| 20:57368699:CCCTA:C | acceptor_loss | 1.0000 |
| 20:57368700:CCTA:C | acceptor_loss | 1.0000 |
| 20:57368701:CTAG:C | acceptor_loss | 1.0000 |
AlphaMissense
1026 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 14:21043203:T:C | F71L | 0.962 |
| 14:21043205:C:A | F71L | 0.962 |
| 14:21043205:C:G | F71L | 0.962 |
| 14:21043107:T:C | F39L | 0.916 |
| 14:21043109:T:A | F39L | 0.916 |
| 14:21043109:T:G | F39L | 0.916 |
| 14:21043204:T:G | F71C | 0.914 |
| 14:21043190:A:C | K66N | 0.889 |
| 14:21043190:A:T | K66N | 0.889 |
| 14:21043290:A:C | S100R | 0.874 |
| 14:21043292:C:A | S100R | 0.874 |
| 14:21043292:C:G | S100R | 0.874 |
| 14:21043185:T:A | C65S | 0.853 |
| 14:21043186:G:C | C65S | 0.853 |
| 14:21043317:T:A | C109S | 0.827 |
| 14:21043318:G:C | C109S | 0.827 |
| 14:21043108:T:G | F39C | 0.824 |
| 14:21043204:T:C | F71S | 0.816 |
| 14:21043189:A:T | K66I | 0.815 |
| 14:21043218:T:C | F76L | 0.807 |
| 14:21043220:C:A | F76L | 0.807 |
| 14:21043220:C:G | F76L | 0.807 |
| 14:21043118:G:C | Q42H | 0.781 |
| 14:21043118:G:T | Q42H | 0.781 |
| 14:21043347:T:A | C119S | 0.780 |
| 14:21043348:G:C | C119S | 0.780 |
| 14:21043392:T:A | C134S | 0.775 |
| 14:21043393:G:C | C134S | 0.775 |
| 14:21043239:T:A | C83S | 0.767 |
| 14:21043240:G:C | C83S | 0.767 |
dbSNP variants (sampled 300 via entrez): RS1000754233 (14:21044137 G>A), RS1001789922 (14:21040621 C>G), RS1002733456 (14:21040956 G>A,T), RS1002791703 (14:21041951 G>A), RS1003709252 (14:21042133 G>A), RS1004344330 (14:21042309 A>G), RS1004738692 (14:21042577 T>C), RS1005332663 (14:21044172 G>A), RS1006835678 (14:21044518 C>T), RS1007723958 (14:21041407 C>G), RS1008315851 (14:21042862 G>C), RS1008684782 (14:21041340 C>G,T), RS1009736381 (14:21044161 T>A,C), RS1011413767 (14:21041270 C>A), RS1011509053 (14:21041064 T>C)
Disease associations
OMIM: gene MIM:612484 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
20 total (human), top 20 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Aflatoxin B1 | decreases methylation, increases expression | 3 |
| Particulate Matter | increases expression, increases abundance | 3 |
| sodium arsenite | increases expression | 2 |
| Benzo(a)pyrene | increases expression, increases methylation, affects methylation, decreases methylation | 2 |
| Formaldehyde | increases expression | 2 |
| Tobacco Smoke Pollution | increases expression | 2 |
| arsenite | increases methylation | 1 |
| hydroquinone | increases expression | 1 |
| perfluorooctane sulfonic acid | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| abrine | increases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Estradiol | affects cotreatment, increases expression | 1 |
| Mustard Gas | increases expression | 1 |
| N-Nitrosopyrrolidine | increases expression | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Tetrachlorodibenzodioxin | increases expression | 1 |
| Cadmium Chloride | increases expression | 1 |
| Lactic Acid | decreases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.