RNASEL
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Summary
RNASEL (ribonuclease L, HGNC:10050) is a protein-coding gene on chromosome 1q25.3, encoding 2-5A-dependent ribonuclease (Q05823). Endoribonuclease that functions in the interferon (IFN) antiviral response.
This gene encodes a component of the interferon-regulated 2-5A system that functions in the antiviral and antiproliferative roles of interferons. The protein is involved in innate immunity and is active against multiple RNA viruses, including the influenza and SARS-CoV-2 viruses. Mutations in this gene have been associated with predisposition to prostate cancer and this gene is a candidate for the hereditary prostate cancer 1 (HPC1) allele.
Source: NCBI Gene 6041 — RefSeq curated summary.
At a glance
- Gene–disease (curated): multisystem inflammatory syndrome in children and adults (Moderate, GenCC) — +1 more curated relationship
- GWAS associations: 2
- Clinical variants (ClinVar): 169 total — 1 pathogenic, 2 likely-pathogenic
- Phenotypes (HPO): 3
- Druggable target: yes
- MANE Select transcript:
NM_021133
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:10050 |
| Approved symbol | RNASEL |
| Name | ribonuclease L |
| Location | 1q25.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000135828 |
| Ensembl biotype | protein_coding |
| OMIM | 180435 |
| Entrez | 6041 |
Gene structure
Transcript identifiers
Ensembl transcripts: 4 — 4 protein_coding
ENST00000367559, ENST00000539397, ENST00000890859, ENST00000946546
RefSeq mRNA: 1 — MANE Select: NM_021133
NM_021133
CCDS: CCDS1347
Canonical transcript exons
ENST00000367559 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000922066 | 182584081 | 182584166 |
| ENSE00001445028 | 182585327 | 182586970 |
| ENSE00001445029 | 182589167 | 182589256 |
| ENSE00001818322 | 182573634 | 182575578 |
| ENSE00002328872 | 182582053 | 182582258 |
| ENSE00002350700 | 182581225 | 182581357 |
| ENSE00002416678 | 182576256 | 182576389 |
Expression profiles
Bgee: expression breadth ubiquitous, 249 present calls, max score 90.81.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 4.9815 / max 88.6392, expressed in 1427 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 16158 | 3.7430 | 1302 |
| 16157 | 0.7507 | 390 |
| 16159 | 0.4565 | 266 |
| 16156 | 0.0313 | 13 |
Top tissues by expression
281 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| amniotic fluid | UBERON:0000173 | 90.81 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 87.85 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 86.15 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 86.02 | gold quality |
| blood | UBERON:0000178 | 85.78 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 84.49 | gold quality |
| visceral pleura | UBERON:0002401 | 83.58 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 83.55 | gold quality |
| jejunal mucosa | UBERON:0000399 | 83.52 | gold quality |
| parietal pleura | UBERON:0002400 | 83.30 | gold quality |
| bronchial epithelial cell | CL:0002328 | 82.94 | gold quality |
| seminal vesicle | UBERON:0000998 | 82.91 | gold quality |
| corpus epididymis | UBERON:0004359 | 82.90 | gold quality |
| monocyte | CL:0000576 | 82.82 | gold quality |
| leukocyte | CL:0000738 | 82.81 | gold quality |
| tibia | UBERON:0000979 | 82.78 | gold quality |
| mononuclear cell | CL:0000842 | 82.64 | gold quality |
| pleura | UBERON:0000977 | 82.42 | gold quality |
| caput epididymis | UBERON:0004358 | 81.76 | gold quality |
| granulocyte | CL:0000094 | 81.47 | gold quality |
| calcaneal tendon | UBERON:0003701 | 81.44 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 81.17 | gold quality |
| adrenal tissue | UBERON:0018303 | 80.83 | gold quality |
| colonic mucosa | UBERON:0000317 | 80.81 | gold quality |
| rectum | UBERON:0001052 | 80.30 | gold quality |
| tendon | UBERON:0000043 | 79.66 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 79.65 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 79.58 | gold quality |
| oral cavity | UBERON:0000167 | 79.57 | gold quality |
| stromal cell of endometrium | CL:0002255 | 79.30 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 4.35 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): BRCA1, MYC
miRNA regulators (miRDB)
100 targeting RNASEL, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-29A-3P | 100.00 | 73.11 | 1835 |
| HSA-MIR-29B-3P | 100.00 | 73.18 | 1833 |
| HSA-MIR-29C-3P | 100.00 | 73.15 | 1833 |
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-450A-1-3P | 100.00 | 69.33 | 1837 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-103A-3P | 99.98 | 69.14 | 1595 |
| HSA-MIR-107 | 99.98 | 69.14 | 1595 |
| HSA-MIR-34C-5P | 99.97 | 70.45 | 1577 |
| HSA-MIR-449B-5P | 99.97 | 70.26 | 1580 |
| HSA-MIR-3688-3P | 99.97 | 72.02 | 2834 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-548AT-5P | 99.96 | 70.83 | 2666 |
| HSA-MIR-1468-3P | 99.96 | 72.74 | 3797 |
| HSA-MIR-545-3P | 99.95 | 70.74 | 2783 |
| HSA-MIR-185-3P | 99.95 | 67.01 | 1743 |
| HSA-MIR-498-3P | 99.91 | 71.27 | 1114 |
| HSA-MIR-106A-5P | 99.90 | 73.94 | 2683 |
| HSA-MIR-9902 | 99.89 | 69.15 | 2250 |
| HSA-MIR-5682 | 99.89 | 72.56 | 1005 |
| HSA-MIR-17-5P | 99.89 | 73.83 | 2665 |
| HSA-MIR-302A-3P | 99.89 | 71.23 | 1777 |
Literature-anchored findings (GeneRIF, showing 40)
- Germline alterations of the RNASEL gene, a candidate HPC1 gene at 1q25, in patients and families with prostate cancer. (PMID:11941539)
- Analysis of the RNASEL gene in familial and sporadic prostate cancer. A total of six variants were identified, including one intronic and five exonic changes (three missense and two silent alterations). (PMID:12022038)
- Structural and functional features of the 37-kDa 2-5A-dependent RNase L in chronic fatigue syndrome (PMID:12034027)
- physical performance and prediction of 2-5A synthetase antiviral pathway activity in patients with chronic fatigue syndrome. (PMID:12073768)
- in rRNA and small nucleolar RNA maturation, not in telomere elongation inhibition (PMID:12118002)
- A novel founder mutation in the RNASEL gene, 471delAAAG, is associated with prostate cancer in Ashkenazi Jews. (PMID:12145743)
- The variant Arg462Gln has 3X less enzymatic activity than the wildtype and is significantly associated with prostate cancer risk (P=0.007). (PMID:12415269)
- Author reviews the tumor suppressor role of RNase L, proposing that it functions in counteracting prostate cancer by virtue of its ability to degrade RNA, thus initiating a cellular stress response that leads to apoptosis. (PMID:12590567)
- A genome-wide scan of high risk prostate cancer families in North America has demonstrated linkage of a particular marker to chromosme 1q(HPC1). (PMID:12653398)
- polymorphic changes within the RNASEL gene may be associated with familial prostate cancer risk (PMID:12915880)
- JNK and RNase L function in an integrated signaling pathway during the IFN response that leads to elimination of virus-infected cells through apoptosis (PMID:14570908)
- RNASEL may function as a tumor suppressor in prostate cancer. (PMID:14695991)
- does not constitute a major cell defence mechanism against the varicella-zoster virus infection (PMID:15107989)
- Studies report an association between the RNASEL G1385A variant and prostate cancer risk; this variant does not appear to be implicated in the development of breast cancer. (PMID:15330212)
- RNASEL does not have a major role in prostate cancer etiology (PMID:15534086)
- These results indicated that the ankyrin-repeat domain of RNase L constricts its structure by binding of 2-5A. This observation suggests a revised model of the 2-5A-induced activation of RNase L. (PMID:15849753)
- Human translation termination factor eRF3/GSPT1 is an interacting partner of RNase L. (PMID:15908960)
- results suggest that RNASEL variants Glu265X and Arg462Gln may contribute to the tumorigenesis of sporadic and familial pancreatic cancer (PMID:15981205)
- Single nucleotide polymorphisms associated with hereditary prostate cancer. (PMID:16114055)
- Hepatitis c virus polyprotein expression caused a severe cytopathological effect in human cells as a result of inhibition of protein synthesis and apoptosis induction, triggered by the activation of the IFN-induced enzymes PKR and RNase L systems. (PMID:16156900)
- androgen receptor and the interferon-activated RNase L interact with each other in a ligand-dependent manner (PMID:16166078)
- 2’-5’-linked oligoadenylate activation of RNase L produces a remarkable stimulation of transcription (>/=20-fold) for genes that suppress virus replication and prostate cancer. (PMID:16203993)
- characterization of 2’,5’-linked oligoadenylate binding determinant of human RNase L (PMID:16234235)
- single nucleotide polymorphisms (SNPs) identified in RNASEL exons in hospitalized patients with West Nile Virus infection (PMID:16235172)
- RNASEL genetic alterations does not support a significant role in prostate cancer predisposition in Israeli Ashkenazi Jews. (PMID:16537704)
- Data suggest that the primary role of double-stranded RNA binding by the NS1A protein in virus-infected cells is to sequester dsRNA away from RNAse L. (PMID:16627618)
- Gene is associated with inherited prostatic cancer. [review] (PMID:16869093)
- A silent polymorphism in the RNASEL gene occurs more prevalently in high-risk Ashkenazi breast/ovarian cancer patients without a BRCA1/2 mutation. (PMID:16944274)
- Compared with the genotype Asp/Asp, the Glu variant at the Asp541Glu polymorphism increases prostate cancer risk by <2-fold in Caucasians, regardless of family history of the disease. (PMID:17020975)
- Report of the crystal structure of the N-terminal ankyrin repeat domain of human RNase L complexed with an activator molecule containing a 5’-phosphorylated 2’,5’-linked oligoadenylate, [(pp)p(A2’p5’)(n)A]. (PMID:17150764)
- the IFN-inducible RNase L may play an important role during stress-response through RNA-degradation and apoptosis (PMID:17200614)
- study indicated only p53 & RNASEL genotypes had significant influence on age of onset of Lynch syndrome in an additive mode of inheritance & that effects of both variants are purely additive supporting the notion (PMID:17224235)
- Positive association between higher trans-fatty acid consumption and prostate cancer may be modified by the functional RNASEL variant R462Q. (PMID:17234723)
- HuR-dependent regulation of RNase-L enhances its antiviral activity, demonstrating the functional significance of this regulation (PMID:17237228)
- the effects of oligo A synthetase/RNase on the replication cycle of parainfluenza virus type 5 (PMID:17307214)
- RNase L could have a role in cancer biology and evidence of a tumor suppressor function of RNase L has emerged from studies on the genetics of hereditary prostate cancer [review] (PMID:17400356)
- results suggest that the RNASEL Gln/Gln genotype does not play an important role in the etiology of prostate cancer in the general population (PMID:17407163)
- RNASEL has a role as a predisposition gene for prostate cancer in African Americans and Hispanic Caucasians (PMID:17908993)
- common variation in the putative prostate cancer susceptibility gene, RNASEL, or its inhibitor does not contribute significantly to prostate cancer risk in Tobago Afro-Caribbean population (PMID:18189233)
- This prospective study suggests that prostate cancer in patients with the R462Q allelic variant of the HPC1/RNASEL gene is not associated with more aggressive clinical or pathological features in radical prostatectomy specimens. (PMID:18289577)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Rnasel | ENSMUSG00000066800 |
| rattus_norvegicus | Rnasel | ENSRNOG00000027017 |
Protein
Protein identifiers
2-5A-dependent ribonuclease — Q05823 (reviewed: Q05823)
Alternative names: Ribonuclease 4, Ribonuclease L
All UniProt accessions (1): Q05823
UniProt curated annotations — full annotation on UniProt →
Function. Endoribonuclease that functions in the interferon (IFN) antiviral response. In INF treated and virus infected cells, RNASEL probably mediates its antiviral effects through a combination of direct cleavage of single-stranded viral RNAs, inhibition of protein synthesis through the degradation of rRNA, induction of apoptosis, and induction of other antiviral genes. RNASEL mediated apoptosis is the result of a JNK-dependent stress-response pathway leading to cytochrome c release from mitochondria and caspase-dependent apoptosis. Therefore, activation of RNASEL could lead to elimination of virus infected cells under some circumstances. In the crosstalk between autophagy and apoptosis proposed to induce autophagy as an early stress response to small double-stranded RNA and at later stages of prolonged stress to activate caspase-dependent proteolytic cleavage of BECN1 to terminate autophagy and promote apoptosis. Might play a central role in the regulation of mRNA turnover. Cleaves 3’ of UpNp dimers, with preference for UU and UA sequences, to sets of discrete products ranging from between 4 and 22 nucleotides in length. Involved in intercellular immune signaling. Cross-activated by 2’,5’-oligoadenylates (2-5A) previously generated in RNA virus-infected cells, triggers type I interferon signaling in uninfected neighboring cells to limit local spread of infection.
Subunit / interactions. Monomer (inactive form) or homodimer. Interacts with ABCE1; this interaction inhibits the RNASEL.
Subcellular location. Cytoplasm. Mitochondrion.
Tissue specificity. Highly expressed in spleen and thymus followed by prostate, testis, uterus, small intestine, colon and peripheral blood leukocytes.
Disease relevance. Prostate cancer, hereditary, 1 (HPC1) [MIM:601518] A condition associated with familial predisposition to cancer of the prostate. Most prostate cancers are adenocarcinomas that develop in the acini of the prostatic ducts. Other rare histopathologic types of prostate cancer that occur in approximately 5% of patients include small cell carcinoma, mucinous carcinoma, prostatic ductal carcinoma, transitional cell carcinoma, squamous cell carcinoma, basal cell carcinoma, adenoid cystic carcinoma (basaloid), signet-ring cell carcinoma and neuroendocrine carcinoma. Disease susceptibility is associated with variants affecting the gene represented in this entry.
Activity regulation. After binding to 2-5A (5’-phosphorylated 2’,5’-linked oligoadenylates) the homodimerization and subsequent activation occurs. Inhibited by RNASEL inhibitor ABCE1/RLI, a cytoplasmic member of the ATP-binding cassette (ABC) transporter family.
Cofactor. Manganese or magnesium. Required for optimal RNA cleavage rates.
Domain organisation. The nine ankyrin repeats also called 2-5A sensor constitute the N-terminus 2-5A binding domain. The protein kinase domain is predicted to be catalytically inactive. It allows the homodimerization. The ribonuclease domain is located in the C-terminus. A single active nuclease domain in a dimer is sufficient for ribonuclease activity.
Induction. By interferons. Virus replication in higher vertebrates is restrained by IFNs that cause cells to transcribe genes encoding antiviral proteins, such as 2’-5’ oligoadenylate synthetases (OASs). oligoadenylate synthetase is stimulated by dsRNA to produce 5’-phosphorylated, 2’-5’-linked oligoadenylates (2-5A), whose function is to activate RNASEL.
Similarity. Belongs to the protein kinase superfamily.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q05823-1 | 1 | yes |
| Q05823-2 | 2 |
RefSeq proteins (1): NP_066956* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000719 | Prot_kinase_dom | Domain |
| IPR002110 | Ankyrin_rpt | Repeat |
| IPR010513 | KEN_dom | Domain |
| IPR011009 | Kinase-like_dom_sf | Homologous_superfamily |
| IPR036770 | Ankyrin_rpt-contain_sf | Homologous_superfamily |
| IPR038357 | KEN_sf | Homologous_superfamily |
| IPR042745 | RNase-L_RNase | Domain |
Pfam: PF00069, PF06479, PF12796, PF13857
Enzyme classification (BRENDA):
- EC 4.6.1.19 — ribonuclease T2 (BRENDA: 54 organisms, 147 substrates, 64 inhibitors, 73 Km, 16 kcat entries)
Substrate kinetics (BRENDA)
30 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| CPU | 0.076–20 | 11 |
| APG | 0.003–1.14 | 4 |
| APA | 0.005–0.065 | 3 |
| APC | 0.025–0.13 | 3 |
| APU | 0.03–0.078 | 3 |
| CPG | 0.11–2.15 | 3 |
| GPA | 0.02–0.072 | 3 |
| GPC | 0.107–0.11 | 3 |
| GPG | 0.044–0.71 | 3 |
| GPU | 0.075–0.12 | 3 |
| UPA | 0.05–0.144 | 3 |
| UPG | 0.06–0.69 | 3 |
| UPU | 0.113–0.22 | 3 |
| 2’,3’-CCMP | 0.16–0.4 | 2 |
| 2’,3’-CUMP | 0.43–6.1 | 2 |
UniProt features (97 total): helix 43, strand 12, repeat 9, mutagenesis site 9, sequence variant 7, turn 5, region of interest 4, domain 2, splice variant 2, chain 1, zinc finger region 1, compositionally biased region 1, modified residue 1
Structure
Experimental structures (PDB)
5 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 1WDY | X-RAY DIFFRACTION | 1.8 |
| 4OAV | X-RAY DIFFRACTION | 2.1 |
| 4G8K | X-RAY DIFFRACTION | 2.4 |
| 4OAU | X-RAY DIFFRACTION | 2.6 |
| 4G8L | X-RAY DIFFRACTION | 2.8 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q05823-F1 | 91.96 | 0.83 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 684
Mutagenesis-validated functional residues (9):
| Position | Phenotype |
|---|---|
| 240 | reduced 2-5a binding activity; almost complete loss of 2-5a binding activity; when associated with n-274. |
| 274 | reduced 2-5a binding activity; almost complete loss of 2-5a binding activity; when associated with n-240. |
| 392 | complete loss of enzymatic activity and enzyme dimerization. no change in binding to 2-5a and rna. |
| 583 | no change in enzymatic activity. |
| 584 | no change in enzymatic activity. |
| 632 | no change in enzymatic activity. |
| 661 | complete loss of enzymatic activity. |
| 667 | complete loss of enzymatic activity. no change in 2-5a binding and enzyme dimerization. |
| 672 | complete loss of enzymatic activity. no change in 2-5a binding activity and enzyme dimerization. |
Function
Pathways and Gene Ontology
Reactome pathways
6 pathways
| ID | Pathway |
|---|---|
| R-HSA-8983711 | OAS antiviral response |
| R-HSA-909733 | Interferon alpha/beta signaling |
| R-HSA-1169410 | Antimicrobial mechanism of IFN-stimulated genes |
| R-HSA-1280215 | Cytokine Signaling in Immune system |
| R-HSA-168256 | Immune System |
| R-HSA-913531 | Interferon Signaling |
MSigDB gene sets: 221 (showing top):
GOBP_RIBOSOME_BIOGENESIS, GOBP_CARBOHYDRATE_TRANSPORT, GOMF_ENDONUCLEASE_ACTIVITY, GOMF_RNA_NUCLEASE_ACTIVITY, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOBP_REGULATION_OF_MRNA_CATABOLIC_PROCESS, MODULE_255, GOMF_NUCLEASE_ACTIVITY, MODULE_64, GOBP_NEGATIVE_REGULATION_OF_VIRAL_PROCESS, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, MODULE_317, TAKADA_GASTRIC_CANCER_COPY_NUMBER_DN, GOBP_POSITIVE_REGULATION_OF_TRANSMEMBRANE_TRANSPORT, GOBP_POST_TRANSCRIPTIONAL_REGULATION_OF_GENE_EXPRESSION
GO Biological Process (12): rRNA processing (GO:0006364), RNA processing (GO:0006396), mRNA processing (GO:0006397), protein phosphorylation (GO:0006468), regulation of mRNA stability (GO:0043488), negative regulation of viral genome replication (GO:0045071), fat cell differentiation (GO:0045444), positive regulation of transcription by RNA polymerase II (GO:0045944), positive regulation of D-glucose import across plasma membrane (GO:0046326), defense response to virus (GO:0051607), regulation of gene expression (GO:0010468), regulation of RNA metabolic process (GO:0051252)
GO Molecular Function (15): RNA binding (GO:0003723), RNA endonuclease activity (GO:0004521), RNA nuclease activity (GO:0004540), protein kinase activity (GO:0004672), ATP binding (GO:0005524), zinc ion binding (GO:0008270), hydrolase activity (GO:0016787), rRNA binding (GO:0019843), identical protein binding (GO:0042802), ribonucleoprotein complex binding (GO:0043021), nucleotide binding (GO:0000166), nuclease activity (GO:0004518), endonuclease activity (GO:0004519), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (5): mitochondrial matrix (GO:0005759), cytosol (GO:0005829), nuclear matrix (GO:0016363), cytoplasm (GO:0005737), mitochondrion (GO:0005739)
Reactome top-level categories
Rollup of top-4 pathways:
| Category | Pathways |
|---|---|
| Interferon Signaling | 2 |
| Antimicrobial mechanism of IFN-stimulated genes | 1 |
| Immune System | 1 |
| Cytokine Signaling in Immune system | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| RNA processing | 2 |
| gene expression | 2 |
| nuclease activity | 2 |
| cytoplasm | 2 |
| rRNA metabolic process | 1 |
| ribosome biogenesis | 1 |
| RNA biosynthetic process | 1 |
| primary metabolic process | 1 |
| mRNA metabolic process | 1 |
| phosphorylation | 1 |
| protein modification process | 1 |
| regulation of RNA stability | 1 |
| regulation of mRNA catabolic process | 1 |
| viral genome replication | 1 |
| regulation of viral genome replication | 1 |
| negative regulation of viral process | 1 |
| cell differentiation | 1 |
| regulation of transcription by RNA polymerase II | 1 |
| transcription by RNA polymerase II | 1 |
| positive regulation of DNA-templated transcription | 1 |
| positive regulation of D-glucose transmembrane transport | 1 |
| regulation of D-glucose import across plasma membrane | 1 |
| D-glucose import across plasma membrane | 1 |
| defense response | 1 |
| response to virus | 1 |
| regulation of macromolecule biosynthetic process | 1 |
| RNA metabolic process | 1 |
| regulation of nucleobase-containing compound metabolic process | 1 |
| regulation of macromolecule metabolic process | 1 |
| nucleic acid binding | 1 |
| endonuclease activity | 1 |
| RNA nuclease activity | 1 |
| catalytic activity, acting on RNA | 1 |
| kinase activity | 1 |
| phosphotransferase activity, alcohol group as acceptor | 1 |
| catalytic activity, acting on a protein | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| transition metal ion binding | 1 |
Protein interactions and networks
STRING
6792 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RNASEL | OAS1 | P00973 | 924 |
| RNASEL | ABCE1 | P61221 | 918 |
| RNASEL | OASL | Q15646 | 915 |
| RNASEL | OAS3 | Q9Y6K5 | 908 |
| RNASEL | EIF2AK2 | P19525 | 902 |
| RNASEL | OAS2 | P29728 | 859 |
| RNASEL | RIGI | O95786 | 835 |
| RNASEL | IFIH1 | Q9BYX4 | 809 |
| RNASEL | ELAC2 | Q9BQ52 | 759 |
| RNASEL | ANG | P03950 | 740 |
| RNASEL | PDE12 | Q6L8Q7 | 718 |
| RNASEL | IFNB1 | P01574 | 705 |
| RNASEL | IFNAR2 | P48551 | 693 |
| RNASEL | MTIF2 | P46199 | 688 |
| RNASEL | MX1 | P20591 | 688 |
IntAct
45 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| HIF1AN | APBA3 | psi-mi:“MI:0914”(association) | 0.850 |
| HIF1AN | GMDS | psi-mi:“MI:0914”(association) | 0.640 |
| LPAR4 | POTEF | psi-mi:“MI:0914”(association) | 0.530 |
| SLC15A1 | METTL15 | psi-mi:“MI:0914”(association) | 0.530 |
| IL13RA2 | METTL15 | psi-mi:“MI:0914”(association) | 0.530 |
| SYP | APBB1 | psi-mi:“MI:0914”(association) | 0.530 |
| RNASEL | IQGAP1 | psi-mi:“MI:0914”(association) | 0.500 |
| RNASEL | IQGAP1 | psi-mi:“MI:0915”(physical association) | 0.500 |
| TP53 | MDM2 | psi-mi:“MI:0914”(association) | 0.350 |
| HIF1AN | CNOT1 | psi-mi:“MI:0914”(association) | 0.350 |
| ST8SIA4 | NRP1 | psi-mi:“MI:0914”(association) | 0.350 |
| SYP | APBB1 | psi-mi:“MI:0914”(association) | 0.350 |
| DOCK5 | DPYSL4 | psi-mi:“MI:0914”(association) | 0.350 |
| SLC37A3 | CYB5R3 | psi-mi:“MI:0914”(association) | 0.350 |
| HIF1AN | ST13 | psi-mi:“MI:0914”(association) | 0.350 |
| M | psi-mi:“MI:0914”(association) | 0.350 | |
| RNASEL | UNC119B | psi-mi:“MI:0914”(association) | 0.350 |
| ATG16L1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| SV2A | ILVBL | psi-mi:“MI:0914”(association) | 0.350 |
| S100A2 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| ST8SIA4 | FAM234B | psi-mi:“MI:0914”(association) | 0.350 |
| PTH2R | METTL15 | psi-mi:“MI:0914”(association) | 0.350 |
| PRKY | METTL15 | psi-mi:“MI:0914”(association) | 0.350 |
| SLC18A2 | UBXN8 | psi-mi:“MI:0914”(association) | 0.350 |
| HNRNPCL2 | SMCHD1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (52): TCF12 (Two-hybrid), RNASEL (Affinity Capture-MS), RNASEL (Affinity Capture-MS), RNASEL (Affinity Capture-MS), RNASEL (Affinity Capture-MS), RNASEL (Affinity Capture-MS), RNASEL (Affinity Capture-MS), RNASEL (Affinity Capture-MS), RNASEL (Affinity Capture-MS), RNASEL (Affinity Capture-MS), RNASEL (Affinity Capture-MS), RNASEL (Affinity Capture-RNA), RNASEL (Affinity Capture-MS), RNASEL (Affinity Capture-MS), RNASEL (Affinity Capture-MS)
ESM2 similar proteins: A0A1L8GXY4, A4IIK1, A6NGH8, B0R160, C6FG12, E7F654, O12990, O19064, O60674, O62471, P32019, Q05823, Q09178, Q1EHT7, Q1L8H0, Q20CR4, Q2T9W8, Q32KX5, Q38SD2, Q3TX51, Q3UHC2, Q3UV48, Q3V1N1, Q4VSN2, Q4VSN5, Q5RB23, Q5XUN4, Q62120, Q62689, Q641X1, Q6GLE8, Q6GM71, Q6X9E4, Q6XUX3, Q75R65, Q7KLI1, Q86V97, Q86X40, Q8BWR4, Q8C4V4
Diamond homologs: A0A072VIM5, A0A0K0PU92, A2CIR7, B9DHT4, C9JJ37, E7BQV0, G3LSH3, G8GTN7, Q05823, Q0JJ01, Q2HW56, Q2QXZ2, Q2RAQ5, Q5D0W8, Q5ICL9, Q5XIU1, Q75HA6, Q8L746, Q96BM1, Q96DX5, Q99LJ2, Q9FDY4, Q9M1I7, Q9SZI3, Q9ZVC2, S4VGD0, Q5R4S6, Q8R179, Q9N010, Q9NVX7, A0M8T3, A1X154, A4D7T3, C9JTQ0, Q00PJ3, Q05921, Q07DV3, Q07DX6, Q07DY6, Q07DZ7
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| BRCA1 | “up-regulates quantity by expression” | RNASEL | “transcriptional regulation” |
Disease & clinical
Clinical variants and AI predictions
ClinVar
169 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 2 |
| Uncertain significance | 136 |
| Likely benign | 12 |
| Benign | 8 |
Top pathogenic / likely-pathogenic (3)
| Variant ID | HGVS | Classification |
|---|---|---|
| 13005 | NM_021133.4(RNASEL):c.3G>A (p.Met1Ile) | Pathogenic |
| 2445339 | NM_021133.4(RNASEL):c.1115C>A (p.Ala372Asp) | Likely pathogenic |
| 2445376 | NM_021133.4(RNASEL):c.1469A>G (p.Asn490Ser) | Likely pathogenic |
SpliceAI
1112 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:182576251:CTTA:C | donor_gain | 1.0000 |
| 1:182576254:A:AC | donor_gain | 1.0000 |
| 1:182576254:ACTTT:A | donor_loss | 1.0000 |
| 1:182576255:C:CA | donor_gain | 1.0000 |
| 1:182576255:CT:C | donor_gain | 1.0000 |
| 1:182576255:CTT:C | donor_gain | 1.0000 |
| 1:182576255:CTTT:C | donor_gain | 1.0000 |
| 1:182576255:CTTTT:C | donor_gain | 1.0000 |
| 1:182576385:TTAAT:T | acceptor_gain | 1.0000 |
| 1:182576386:TAAT:T | acceptor_gain | 1.0000 |
| 1:182576386:TAATC:T | acceptor_loss | 1.0000 |
| 1:182576387:AAT:A | acceptor_gain | 1.0000 |
| 1:182576387:AATC:A | acceptor_loss | 1.0000 |
| 1:182576388:AT:A | acceptor_gain | 1.0000 |
| 1:182576389:TCT:T | acceptor_loss | 1.0000 |
| 1:182576390:C:CC | acceptor_gain | 1.0000 |
| 1:182576390:CTAA:C | acceptor_loss | 1.0000 |
| 1:182582052:CCT:C | donor_gain | 1.0000 |
| 1:182582256:GTCC:G | acceptor_loss | 1.0000 |
| 1:182582257:TCCT:T | acceptor_loss | 1.0000 |
| 1:182576391:T:A | acceptor_loss | 0.9900 |
| 1:182579772:T:A | donor_gain | 0.9900 |
| 1:182582048:CTTA:C | donor_loss | 0.9900 |
| 1:182582049:TTA:T | donor_loss | 0.9900 |
| 1:182582050:TA:T | donor_loss | 0.9900 |
| 1:182582051:A:AC | donor_gain | 0.9900 |
| 1:182582052:C:CC | donor_gain | 0.9900 |
| 1:182582052:C:CT | donor_loss | 0.9900 |
| 1:182582052:CCTCT:C | donor_gain | 0.9900 |
| 1:182582255:GGTC:G | acceptor_gain | 0.9900 |
AlphaMissense
4931 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:182586429:G:C | F126L | 0.985 |
| 1:182586429:G:T | F126L | 0.985 |
| 1:182586431:A:G | F126L | 0.985 |
| 1:182581236:A:G | W632R | 0.983 |
| 1:182581236:A:T | W632R | 0.983 |
| 1:182576295:C:G | R667P | 0.979 |
| 1:182582140:A:G | L562P | 0.970 |
| 1:182586611:C:G | A66P | 0.970 |
| 1:182581234:C:A | W632C | 0.969 |
| 1:182581234:C:G | W632C | 0.969 |
| 1:182585631:C:A | K392N | 0.965 |
| 1:182585631:C:G | K392N | 0.965 |
| 1:182586413:C:G | A132P | 0.965 |
| 1:182582245:A:G | L527P | 0.964 |
| 1:182585639:C:G | A390P | 0.962 |
| 1:182576310:A:G | L662P | 0.961 |
| 1:182575530:A:C | F696L | 0.958 |
| 1:182575530:A:T | F696L | 0.958 |
| 1:182575532:A:G | F696L | 0.958 |
| 1:182581243:A:C | F629L | 0.957 |
| 1:182581243:A:T | F629L | 0.957 |
| 1:182581245:A:G | F629L | 0.957 |
| 1:182585625:G:C | F394L | 0.956 |
| 1:182585625:G:T | F394L | 0.956 |
| 1:182585627:A:G | F394L | 0.956 |
| 1:182586424:G:T | A128D | 0.956 |
| 1:182575522:A:G | L699P | 0.955 |
| 1:182582066:A:G | W587R | 0.955 |
| 1:182582066:A:T | W587R | 0.955 |
| 1:182586629:A:G | W60R | 0.955 |
dbSNP variants (sampled 300 via entrez): RS1000067288 (1:182589895 A>G), RS1000125889 (1:182574262 C>T), RS1000280983 (1:182590620 C>T), RS1000336757 (1:182590119 C>A,T), RS1000377925 (1:182581723 A>C,G,T), RS1000396228 (1:182582993 A>T), RS1000428041 (1:182576827 G>A,T), RS1000707032 (1:182585252 T>C), RS1000800351 (1:182576976 A>C), RS1000943502 (1:182588679 C>A), RS1001398265 (1:182573965 T>C), RS1001477950 (1:182588391 T>C), RS1001519295 (1:182579515 G>A,C,T), RS1001742513 (1:182577367 A>G), RS1001870470 (1:182573586 C>T)
Disease associations
OMIM: gene MIM:180435 | disease phenotypes: MIM:601518, MIM:167000
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| multisystem inflammatory syndrome in children and adults | Moderate | Autosomal recessive |
| prostate cancer, hereditary, 1 | Limited | Autosomal dominant |
Mondo (4): prostate cancer (MONDO:0008315), prostate cancer, hereditary, 1 (MONDO:0011098), ovarian cancer (MONDO:0008170), multisystem inflammatory syndrome in children and adults (MONDO:0035375)
Orphanet (2): Familial prostate cancer (Orphanet:1331), Rare ovarian cancer (Orphanet:213500)
HPO phenotypes
3 total (3 of 3 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0003581 | Adult onset |
| HP:0012125 | Prostate cancer |
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001860_11 | Multiple sclerosis | 6.000000e-09 |
| GCST003429_2 | Morning vs. evening chronotype | 7.000000e-18 |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D010051 | Ovarian Neoplasms | C04.588.322.455; C12.050.351.500.056.630.705; C12.050.351.937.418.685; C12.100.250.056.630.705; C12.900.418.685; C19.344.410; C19.391.630.705 |
| D011471 | Prostatic Neoplasms | C04.588.945.440.770; C12.100.500.260.750; C12.100.500.565.625; C12.200.294.260.750; C12.200.294.565.625; C12.200.758.409.750; C12.900.619.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL3575 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
61 potent at pChembl≥5 of 81 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 10.40 | Kd | 0.04 | nM | CHEMBL404038 |
| 9.89 | EC50 | 0.13 | nM | CHEMBL402676 |
| 9.82 | EC50 | 0.15 | nM | CHEMBL414948 |
| 9.70 | EC50 | 0.2 | nM | CHEMBL414948 |
| 9.70 | EC50 | 0.2 | nM | CHEMBL402676 |
| 9.68 | EC50 | 0.21 | nM | CHEMBL414948 |
| 9.66 | Kd | 0.22 | nM | CHEMBL404038 |
| 9.62 | EC50 | 0.24 | nM | CHEMBL214603 |
| 9.52 | EC50 | 0.3 | nM | CHEMBL214603 |
| 9.35 | EC50 | 0.45 | nM | CHEMBL3817920 |
| 9.30 | EC50 | 0.5 | nM | CHEMBL404038 |
| 9.17 | EC50 | 0.68 | nM | CHEMBL405496 |
| 9.15 | EC50 | 0.7 | nM | CHEMBL384725 |
| 9.14 | IC50 | 0.72 | nM | CHEMBL214603 |
| 9.10 | EC50 | 0.8 | nM | CHEMBL405496 |
| 9.08 | EC50 | 0.84 | nM | CHEMBL384725 |
| 8.96 | IC50 | 1.1 | nM | CHEMBL414948 |
| 8.64 | EC50 | 2.3 | nM | CHEMBL601938 |
| 8.62 | EC50 | 2.4 | nM | CHEMBL3818262 |
| 8.60 | EC50 | 2.5 | nM | CHEMBL601938 |
| 8.60 | EC50 | 2.5 | nM | CHEMBL591446 |
| 8.59 | IC50 | 2.6 | nM | CHEMBL402676 |
| 8.57 | EC50 | 2.7 | nM | CHEMBL3819183 |
| 8.40 | EC50 | 4 | nM | CHEMBL410213 |
| 8.38 | EC50 | 4.2 | nM | CHEMBL2058766 |
| 8.34 | EC50 | 4.6 | nM | CHEMBL410213 |
| 8.21 | EC50 | 6.1 | nM | CHEMBL2414867 |
| 8.19 | EC50 | 6.5 | nM | CHEMBL2058765 |
| 8.14 | IC50 | 7.3 | nM | CHEMBL414948 |
| 8.01 | EC50 | 9.7 | nM | CHEMBL601940 |
| 7.89 | EC50 | 12.9 | nM | CHEMBL601940 |
| 7.89 | IC50 | 13 | nM | CHEMBL414948 |
| 7.82 | EC50 | 15 | nM | CHEMBL2058764 |
| 7.80 | EC50 | 16 | nM | CHEMBL407239 |
| 7.77 | EC50 | 17 | nM | CHEMBL601940 |
| 7.72 | EC50 | 19.1 | nM | CHEMBL2414866 |
| 7.70 | IC50 | 20 | nM | CHEMBL414948 |
| 7.69 | EC50 | 20.3 | nM | CHEMBL3818726 |
| 7.62 | IC50 | 24 | nM | CHEMBL405496 |
| 7.52 | EC50 | 30 | nM | CHEMBL407239 |
| 7.28 | EC50 | 53 | nM | CHEMBL2057900 |
| 7.24 | IC50 | 57 | nM | CHEMBL384725 |
| 7.08 | EC50 | 84 | nM | CHEMBL3819262 |
| 6.98 | IC50 | 105 | nM | CHEMBL410213 |
| 6.87 | EC50 | 134 | nM | CHEMBL3818137 |
| 6.70 | EC50 | 200 | nM | CHEMBL2058187 |
| 6.68 | IC50 | 210 | nM | CHEMBL1159914 |
| 6.62 | EC50 | 241 | nM | CHEMBL2414865 |
| 6.52 | EC50 | 300 | nM | CHEMBL2058191 |
| 6.52 | EC50 | 300 | nM | CHEMBL2057902 |
PubChem BioAssay actives
60 with measured affinity, of 242 total; 33 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| [[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] phosphono hydrogen phosphate | 319035: Binding affinity to human recombinant RNase L | kd | <0.0001 | uM |
| [(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methyl [(2R,3R,4R,5R)-2-(6-aminopurin-9-yl)-4-hydroxy-5-(phosphonooxymethyl)oxolan-3-yl] hydrogen phosphate | 197821: Activation of purified recombinant human Ribonuclease L by the compound was measured as degradation of poly (U) 3’[32P]p5’C3’p | ec50 | 0.0001 | uM |
| [(2R,3R,4R,5R)-4-[[(2R,3S,4R,5R)-5-(6-amino-2-methylpurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)-3-hydroxyoxolan-2-yl]methyl [(2R,3R,4R,5R)-2-(6-aminopurin-9-yl)-4-hydroxy-5-(phosphonooxymethyl)oxolan-3-yl] hydrogen phosphate | 197821: Activation of purified recombinant human Ribonuclease L by the compound was measured as degradation of poly (U) 3’[32P]p5’C3’p | ec50 | 0.0001 | uM |
| [[(2R,3R,4R,5R)-4-[[(2R,3R,4R,5R)-4-[[(2R,3S,4R,5R)-5-(6-amino-2-methylpurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] phosphono hydrogen phosphate | 197821: Activation of purified recombinant human Ribonuclease L by the compound was measured as degradation of poly (U) 3’[32P]p5’C3’p | ec50 | 0.0002 | uM |
| [(2R,3R,4R,5R)-4-[[(2R,3R,4R,5R)-4-[[(2R,3S,4R,5R)-5-(6-amino-8-methylpurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)-3-hydroxyoxolan-2-yl]methyl [(2R,3R,4R,5R)-2-(5-fluoro-2,4-dioxopyrimidin-1-yl)-4-hydroxy-5-methyloxolan-3-yl] hydrogen phosphate | 1309499: Induction of recombinant human RNase L activity expressed in Escherichia coli using F-5’-r(C11U2C7)-3’ as substrate by polyacrylamide gel electrophoresis | ec50 | 0.0004 | uM |
| [[(2R,3R,4R,5R)-5-(6-amino-2-methylpurin-9-yl)-4-[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] phosphono hydrogen phosphate | 197821: Activation of purified recombinant human Ribonuclease L by the compound was measured as degradation of poly (U) 3’[32P]p5’C3’p | ec50 | 0.0007 | uM |
| [(2R,3R,4R,5R)-2-(6-amino-2-methylpurin-9-yl)-4-hydroxy-5-(phosphonooxymethyl)oxolan-3-yl] [(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methyl hydrogen phosphate | 197820: Activation of purified recombinant human Ribonuclease L by the compound was measured as degradation of [32P]-pC11U2C7 | ec50 | 0.0007 | uM |
| [(2R,3R,4R,5R)-4-[[(2R,3R,4R,5R)-4-[[(2R,3S,4R,5R)-5-(6-amino-8-methylpurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)-3-hydroxyoxolan-2-yl]methyl [(2R,3R,4R,5R)-2-(6-aminopurin-9-yl)-4-hydroxy-5-(hydroxymethyl)oxolan-3-yl] hydrogen phosphate | 1309499: Induction of recombinant human RNase L activity expressed in Escherichia coli using F-5’-r(C11U2C7)-3’ as substrate by polyacrylamide gel electrophoresis | ec50 | 0.0023 | uM |
| [(2R,3R,4R,5R)-4-[[(2R,3R,4R,5R)-4-[[(2R,3S,4R,5R)-5-(6-amino-8-methylpurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)-3-hydroxyoxolan-2-yl]methyl [(2R,3R,4R,5R)-2-(2,4-dioxopyrimidin-1-yl)-4-hydroxy-5-(hydroxymethyl)oxolan-3-yl] hydrogen phosphate | 1309499: Induction of recombinant human RNase L activity expressed in Escherichia coli using F-5’-r(C11U2C7)-3’ as substrate by polyacrylamide gel electrophoresis | ec50 | 0.0024 | uM |
| [(2R,3R,4R,5R)-4-[[(2R,3R,4R,5R)-4-[[(2R,3S,4R,5R)-5-(6-amino-8-methylpurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)-3-hydroxyoxolan-2-yl]methyl [(2R,3R,4R,5R)-2-(6-aminopurin-9-yl)-4-hydroxy-5-(phosphonooxymethyl)oxolan-3-yl] hydrogen phosphate | 457411: Inhibition of human RNaseL ANK domain expressed in Escherichia coli assessed as 5’ flurescein-r(C11U2C7)-3’ RNA cleavage | ec50 | 0.0025 | uM |
| [(2R,3R,4R,5R)-4-[[(2R,3R,4R,5R)-4-[[(2R,3S,4R,5R)-5-(6-amino-8-methylpurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)-3-hydroxyoxolan-2-yl]methyl [(2R,3R,4R,5R)-2-(2,4-dioxopyrimidin-1-yl)-4-hydroxy-5-(phosphonooxymethyl)oxolan-3-yl] hydrogen phosphate | 1309499: Induction of recombinant human RNase L activity expressed in Escherichia coli using F-5’-r(C11U2C7)-3’ as substrate by polyacrylamide gel electrophoresis | ec50 | 0.0027 | uM |
| [[(2R,3R,4R,5R)-5-(6-amino-2-methylpurin-9-yl)-4-[[(2R,3R,4R,5R)-5-(6-amino-2-methylpurin-9-yl)-4-[[(2R,3S,4R,5R)-5-(6-amino-2-methylpurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] phosphono hydrogen phosphate | 197820: Activation of purified recombinant human Ribonuclease L by the compound was measured as degradation of [32P]-pC11U2C7 | ec50 | 0.0040 | uM |
| [(2R,3R,4R,5R)-2-(6-aminopurin-9-yl)-5-[[[(2R,3R,4R,5R)-2-(6-aminopurin-9-yl)-5-[[[(2R,3R,4R,5R)-2-(6-aminopurin-9-yl)-4-hydroxy-5-(phosphonooxymethyl)oxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]-4-hydroxyoxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]-4-hydroxyoxolan-3-yl]oxy-[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxymethyl]phosphinic acid | 671695: Activation of human RNase L expressed in Escherichia coli BL21 (DE3) cells assessed as RNA cleavage using Cy5-rC11-UU-C7-BHQ2 as substrate by FRET assay | ec50 | 0.0042 | uM |
| [[(2R,3R,4R,5R)-5-(6-aminopurin-7-yl)-4-[[(2R,3R,4R,5R)-5-(6-aminopurin-7-yl)-4-[[(2R,3R,4R,5R)-5-(6-aminopurin-7-yl)-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-7-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] phosphono hydrogen phosphate | 763856: Activation of human recombinant RNase L endonuclease activity using 6-FAM-UUA UCA AAU UCU UAU UUG CCC CAU UUU UUU GGU UUA-BHQ-1 as substrate assessed as substrate cleavage measured for 50 mins by FRET assay | ec50 | 0.0061 | uM |
| [(2R,3R,4R,5R)-2-(6-aminopurin-9-yl)-5-[[[(2R,3R,4R,5R)-2-(6-aminopurin-9-yl)-5-[[[(2R,3R,4R,5R)-2-(6-aminopurin-9-yl)-4-hydroxy-5-(phosphonooxymethyl)oxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]-4-hydroxyoxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]-4-hydroxyoxolan-3-yl]oxy-[[(2R,3S,4S,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxymethyl]phosphinic acid | 671695: Activation of human RNase L expressed in Escherichia coli BL21 (DE3) cells assessed as RNA cleavage using Cy5-rC11-UU-C7-BHQ2 as substrate by FRET assay | ec50 | 0.0065 | uM |
| [(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methyl [(2R,3R,4R,5R)-2-(6-aminopurin-9-yl)-4-hydroxy-5-(phosphonooxymethyl)oxolan-3-yl] hydrogen phosphate | 457411: Inhibition of human RNaseL ANK domain expressed in Escherichia coli assessed as 5’ flurescein-r(C11U2C7)-3’ RNA cleavage | ec50 | 0.0097 | uM |
| [(2R,3R,4R,5R)-2-(6-aminopurin-9-yl)-5-[[[(2R,3R,4R,5R)-2-(6-aminopurin-9-yl)-5-[[[(2R,3R,4R,5R)-2-(6-aminopurin-9-yl)-4-hydroxy-5-(phosphonooxymethyl)oxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]-4-hydroxyoxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]-4-hydroxyoxolan-3-yl]oxy-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxymethyl]phosphinic acid | 671695: Activation of human RNase L expressed in Escherichia coli BL21 (DE3) cells assessed as RNA cleavage using Cy5-rC11-UU-C7-BHQ2 as substrate by FRET assay | ec50 | 0.0150 | uM |
| [(2R,3R,4R,5R)-5-(6-amino-2-methylpurin-9-yl)-4-[[(2R,3S,4R,5R)-5-(6-amino-2-methylpurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methyl [(2R,3R,4R,5R)-2-(6-amino-2-methylpurin-9-yl)-4-hydroxy-5-(phosphonooxymethyl)oxolan-3-yl] hydrogen phosphate | 197821: Activation of purified recombinant human Ribonuclease L by the compound was measured as degradation of poly (U) 3’[32P]p5’C3’p | ec50 | 0.0160 | uM |
| [(2R,3S,4R,5R)-5-(6-aminopurin-7-yl)-2-[[[(2R,3R,4R,5R)-2-(6-aminopurin-7-yl)-5-[[[(2R,3R,4R,5R)-2-(6-aminopurin-7-yl)-4-(2,2-dimethylpropanoyloxymethoxy)-5-[[hydroxy-[hydroxy(phosphonooxy)phosphoryl]oxyphosphoryl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]-4-(2,2-dimethylpropanoyloxymethoxy)oxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]-4-hydroxyoxolan-3-yl]oxymethyl 2,2-dimethylpropanoate | 763856: Activation of human recombinant RNase L endonuclease activity using 6-FAM-UUA UCA AAU UCU UAU UUG CCC CAU UUU UUU GGU UUA-BHQ-1 as substrate assessed as substrate cleavage measured for 50 mins by FRET assay | ec50 | 0.0191 | uM |
| [(2R,3R,4R,5R)-4-[[(2R,3R,4R,5R)-4-[[(2R,3S,4R,5R)-5-(6-amino-8-methylpurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)-3-hydroxyoxolan-2-yl]methyl [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl] hydrogen phosphate | 1309499: Induction of recombinant human RNase L activity expressed in Escherichia coli using F-5’-r(C11U2C7)-3’ as substrate by polyacrylamide gel electrophoresis | ec50 | 0.0203 | uM |
| [(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methoxymethylphosphonic acid | 671695: Activation of human RNase L expressed in Escherichia coli BL21 (DE3) cells assessed as RNA cleavage using Cy5-rC11-UU-C7-BHQ2 as substrate by FRET assay | ec50 | 0.0530 | uM |
| [(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methyl [(2R,3R,4R,5R)-2-(2,4-dioxopyrimidin-1-yl)-4-hydroxy-5-(phosphonooxymethyl)oxolan-3-yl] hydrogen phosphate | 1309499: Induction of recombinant human RNase L activity expressed in Escherichia coli using F-5’-r(C11U2C7)-3’ as substrate by polyacrylamide gel electrophoresis | ec50 | 0.0840 | uM |
| [(2R,3R,4R,5R)-4-[[(2R,3R,4R,5R)-4-[[(2R,3S,4R,5R)-5-(6-amino-8-methylpurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)-3-hydroxyoxolan-2-yl]methyl [(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl] hydrogen phosphate | 1309499: Induction of recombinant human RNase L activity expressed in Escherichia coli using F-5’-r(C11U2C7)-3’ as substrate by polyacrylamide gel electrophoresis | ec50 | 0.1340 | uM |
| [(2R,3R,4R,5R)-2-(6-aminopurin-9-yl)-5-[[[(2R,3R,4R,5R)-2-(6-aminopurin-9-yl)-5-[[[(2R,3R,4R,5R)-2-(6-aminopurin-9-yl)-4-hydroxy-5-(phosphonooxymethyl)oxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]-4-hydroxyoxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]-4-hydroxyoxolan-3-yl]oxymethyl-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy]phosphinic acid | 671695: Activation of human RNase L expressed in Escherichia coli BL21 (DE3) cells assessed as RNA cleavage using Cy5-rC11-UU-C7-BHQ2 as substrate by FRET assay | ec50 | 0.2000 | uM |
| [4-(6-aminopurin-9-yl)-3-[[4-(6-aminopurin-9-yl)-2,3-dihydroxycyclopentyl]methoxy-hydroxyphosphoryl]oxy-2-hydroxycyclopentyl]methyl [5-(6-aminopurin-9-yl)-2-hydroxy-3-(phosphonooxymethyl)cyclopentyl] hydrogen phosphate | 166870: Inhibitory activity to prevent binding of added ppp5’A2’p5’A2’pA2’p5’A3’[32P]p5’ (c3 label) to RNase L in human Daudi lymphoblastoid cells | ic50 | 0.2100 | uM |
| [(2R,3S,4R,5R)-5-(6-aminopurin-7-yl)-2-[[[(2R,3R,4R,5R)-2-(6-aminopurin-7-yl)-5-[[[(2R,3R,4R,5R)-2-(6-aminopurin-7-yl)-5-[[[(2R,3R,4R,5R)-2-(6-aminopurin-7-yl)-4-(2,2-dimethylpropanoyloxymethoxy)-5-[[hydroxy-[hydroxy(phosphonooxy)phosphoryl]oxyphosphoryl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]-4-(2,2-dimethylpropanoyloxymethoxy)oxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]-4-(2,2-dimethylpropanoyloxymethoxy)oxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]-4-hydroxyoxolan-3-yl]oxymethyl 2,2-dimethylpropanoate | 763856: Activation of human recombinant RNase L endonuclease activity using 6-FAM-UUA UCA AAU UCU UAU UUG CCC CAU UUU UUU GGU UUA-BHQ-1 as substrate assessed as substrate cleavage measured for 50 mins by FRET assay | ec50 | 0.2410 | uM |
| [(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methoxy-[[(2R,3R,4S,5R)-2-(6-aminopurin-9-yl)-4-hydroxy-5-(phosphonooxymethyl)oxolan-3-yl]oxymethyl]phosphinic acid | 671695: Activation of human RNase L expressed in Escherichia coli BL21 (DE3) cells assessed as RNA cleavage using Cy5-rC11-UU-C7-BHQ2 as substrate by FRET assay | ec50 | 0.3000 | uM |
| [(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methoxymethyl-[(2R,3R,4R,5R)-2-(6-aminopurin-9-yl)-5-[[[(2R,3R,4R,5R)-2-(6-aminopurin-9-yl)-4-hydroxy-5-(phosphonooxymethyl)oxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]-4-hydroxyoxolan-3-yl]oxyphosphinic acid | 671695: Activation of human RNase L expressed in Escherichia coli BL21 (DE3) cells assessed as RNA cleavage using Cy5-rC11-UU-C7-BHQ2 as substrate by FRET assay | ec50 | 0.3000 | uM |
| [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methoxymethylphosphonic acid | 671695: Activation of human RNase L expressed in Escherichia coli BL21 (DE3) cells assessed as RNA cleavage using Cy5-rC11-UU-C7-BHQ2 as substrate by FRET assay | ec50 | 0.3000 | uM |
| [(2R,3S,4R,5R)-2-(6-aminopurin-9-yl)-5-[[[(2R,3R,4R,5R)-2-(6-aminopurin-9-yl)-5-[[[(2R,3R,4R,5R)-2-(6-aminopurin-9-yl)-4-hydroxy-5-(phosphonooxymethyl)oxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]-4-hydroxyoxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]-4-hydroxyoxolan-3-yl]oxymethyl-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy]phosphinic acid | 671695: Activation of human RNase L expressed in Escherichia coli BL21 (DE3) cells assessed as RNA cleavage using Cy5-rC11-UU-C7-BHQ2 as substrate by FRET assay | ec50 | 1.0000 | uM |
| [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methoxymethyl-[(2R,3R,4R,5R)-2-(6-aminopurin-9-yl)-5-[[[(2R,3R,4R,5R)-2-(6-aminopurin-9-yl)-4-hydroxy-5-(phosphonooxymethyl)oxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]-4-hydroxyoxolan-3-yl]oxyphosphinic acid | 671695: Activation of human RNase L expressed in Escherichia coli BL21 (DE3) cells assessed as RNA cleavage using Cy5-rC11-UU-C7-BHQ2 as substrate by FRET assay | ec50 | 1.0000 | uM |
| [(2R,3R,4S,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-hydroxyoxolan-2-yl]methoxymethylphosphonic acid | 671695: Activation of human RNase L expressed in Escherichia coli BL21 (DE3) cells assessed as RNA cleavage using Cy5-rC11-UU-C7-BHQ2 as substrate by FRET assay | ec50 | 1.0000 | uM |
| 2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-3-[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxychromen-4-one | 1820774: Inhibition of full length H-RNAase L expressed in Escherichia coli BL21 (DE3) assessed as inhibition rate incubated for 15 min in presence of 5 nM 2-5A for 15 mins by Coomassie staining based SDS-PAGE analysis | ic50 | 1.3200 | uM |
CTD chemical–gene interactions
34 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| 2’,5’-oligoadenylate | increases uptake, affects binding, increases activity, increases expression | 2 |
| Silicon Dioxide | decreases expression, increases expression | 2 |
| alpha-pinene | affects cotreatment, increases oxidation, increases abundance | 1 |
| pirinixic acid | decreases expression, increases activity, affects binding | 1 |
| bisphenol A | increases expression | 1 |
| trichostatin A | increases expression | 1 |
| sodium arsenite | increases expression | 1 |
| hydroquinone | decreases expression | 1 |
| methacrylaldehyde | increases abundance, affects cotreatment, increases oxidation | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| erastin | increases expression, increases reaction | 1 |
| abrine | decreases expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| Acrolein | increases oxidation, increases abundance, affects cotreatment | 1 |
| Air Pollutants | affects cotreatment, increases abundance, increases oxidation | 1 |
| Air Pollutants, Occupational | decreases expression | 1 |
| Arsenic | affects methylation | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Calcitriol | increases expression, affects cotreatment | 1 |
| Camptothecin | increases expression | 1 |
| Cisplatin | affects cotreatment, increases expression | 1 |
| Doxycycline | increases expression, increases reaction | 1 |
| Glucose | affects binding, increases activity, increases uptake | 1 |
| Nickel | decreases expression | 1 |
| Ozone | affects cotreatment, increases oxidation, increases abundance | 1 |
| Testosterone | increases expression, affects cotreatment | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
| Tretinoin | increases expression | 1 |
| Valproic Acid | increases expression | 1 |
| Cyclosporine | decreases expression | 1 |
ChEMBL screening assays
43 unique, capped per target: 42 binding, 1 functional
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1065130 | Binding | Inhibition of human RNaseL ANK domain expressed in Escherichia coli assessed as 5’ flurescein-r(C11U2C7)-3’ RNA cleavage | 5’-O-dephosphorylated 2’,5’-oligoadenylate (2-5A) with 8-methyladenosine at the 2’-terminus activates human RNase L. — Bioorg Med Chem Lett |
| CHEMBL2060469 | Functional | Antagonist activity at human RNase L expressed in Escherichia coli BL21 (DE3) cells assessed as RNA cleavage using Cy5-C11-rUU-C7-BHQ2 as substrate by FRET assay in presence of natural activator pAAAA | Activation of human RNase L by 2’- and 5’-O-methylphosphonate-modified oligoadenylates. — Bioorg Med Chem Lett |
Cellosaurus cell lines
4 cell lines: 3 cancer cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D7HC | Ubigene HEK293T RNASEL KO | Transformed cell line | Female |
| CVCL_F1ME | HyCyte A-549 KO-hRNASEL | Cancer cell line | Male |
| CVCL_TJ21 | HAP1 RNASEL (-) 1 | Cancer cell line | Male |
| CVCL_TJ22 | HAP1 RNASEL (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00029224 | PHASE4 | COMPLETED | Treatment With Zoledronic Acid in Patients With Breast Cancer, Multiple Myeloma, and Prostate Cancer With Cancer Related Bone Lesions |
| NCT00035997 | PHASE4 | COMPLETED | Open-label Trial on the Effect of I.V. Zoledronic Acid 4 mg on Bone Density in Hormone Sensitive Prostate Cancer Patients With Bone Metastasis |
| NCT00063609 | PHASE4 | COMPLETED | The Effect of Zoledronic Acid on Bone Loss in Prostate Cancer Patients Undergoing Androgen Deprivation Therapy |
| NCT00103623 | PHASE4 | SUSPENDED | The Plenaxis® Experience Study |
| NCT00106392 | PHASE4 | COMPLETED | A Safety and Efficacy Study of Prograf in the Prevention of Erectile Dysfunction After Radical Prostatectomy |
| NCT00185029 | PHASE4 | UNKNOWN | MR-Lymphography and Lymph Node Staging in Prostate Cancer |
| NCT00199485 | PHASE4 | COMPLETED | Angelica Sinensis for the Treatment of Hot Flashes in Men Undergoing LHRH Therapy for Prostate Cancer |
| NCT00219219 | PHASE4 | COMPLETED | Zoledronic Acid in the Prevention of Skeletal-related Events in Hormone Refractory and Hormone-sensitive Prostate Cancer Patients With Bone Metastases |
| NCT00219271 | PHASE4 | COMPLETED | Effect Of Zoledronic Acid On Circulating And Bone Marrow-Residing Prostate Cancer Cells In Patients With Clinically Localized Prostate Cancer |
| NCT00237146 | PHASE4 | COMPLETED | Study to Evaluate Zoledronic Acid on Quality of Life and Skeletal-related Events as Adjuvant Treatment in Patients With Hormone-naïve Prostate Cancer and Bone Metastasis Who Have Undergone Orchiectomy |
| NCT00242554 | PHASE4 | COMPLETED | Open-label Phase IV Clinical Trial to Evaluate the Safety and Tolerability of Zoledronic Acid in Patients With Prostate Cancer and Bone Metastases |
| NCT00280098 | PHASE4 | COMPLETED | Docetaxel in the Treatment of Hormone Refractory Prostate Cancer |
| NCT00293696 | PHASE4 | COMPLETED | Casodex/Zoladex Biomarkers in Localised Prostate Cancer |
| NCT00334139 | PHASE4 | COMPLETED | Effect of Zoledronic Acid on Bone Metabolism in Patients With Bone Metastasis and Prostate or Breast Cancer |
| NCT00375765 | PHASE4 | COMPLETED | Effects On Dihydrotestosterone Regulated Gene Expression In Benign Prostatic Hyperplasia Or Prostate Cancer |
| NCT00391690 | PHASE4 | COMPLETED | Evaluation of Bone Markers as Diagnostic Tools for Early Detection of Bone Metastases in Patients With High Risk Prostate Cancer |
| NCT00422708 | PHASE4 | COMPLETED | Local Anesthesia for Prostate Biopsy |
| NCT00526331 | PHASE4 | COMPLETED | Evaluation of Arterial Pressure Based Cardiac Output for Goal-Directed Perioperative Therapy |
| NCT00590213 | PHASE4 | COMPLETED | Compare the Value of Prophylactic Versus Therapeutic Breast Radiotherapy in CASODEX |
| NCT00629330 | PHASE4 | TERMINATED | Dissemination of Prostate Cancer Screening to PCP’s in African American Communities |
| NCT00771966 | PHASE4 | COMPLETED | Radical Prostatectomy and Perioperative Fluid Therapy |
| NCT00805701 | PHASE4 | COMPLETED | Study Assessing The Efficacy And Safety Of Avodart (Dutasteride) At Improving Urinary Symptoms In Men With Prostate Cancer Who Are Undergoing Seed Implantation |
| NCT00859027 | PHASE4 | COMPLETED | Effect Of Risedronate On Bone Mass In Older Men Receiving Neoadjuvant Therapy For Prostate Cancer |
| NCT00906269 | PHASE4 | UNKNOWN | Can Hyperbaric Oxygen Improve Erectile Function Following Surgery for Prostate Cancer |
| NCT00953277 | PHASE4 | COMPLETED | Study of Nerve Reconstruction Using AVANCE in Subjects Who Undergo Robotic Assisted Prostatectomy for Treatment of Prostate Cancer |
| NCT00982800 | PHASE4 | COMPLETED | Does Postoperative Gabapentin Reduce Pain, Opioid Consumption and Anxiety and Have a Positive Effect on Health Related Quality of Life After Radical Prostatectomy? |
| NCT01083199 | PHASE4 | COMPLETED | Global Performance Evaluation of the AMS CONTINUUM™ Device |
| NCT01136226 | PHASE4 | COMPLETED | Evaluate Recovery of Testosterone for Patients Using Eligard |
| NCT01161563 | PHASE4 | COMPLETED | Randomized Crossover Trial to Assess the Tolerability of Gonadotropin Releasing Hormone (GnRH) Analogue Administration |
| NCT01230905 | PHASE4 | COMPLETED | Study to Monitor the Effects of Androgen Suppression Treatment on the Heart |
| NCT01296672 | PHASE4 | COMPLETED | 3 Month Finasteride Challenge Test Can Significantly Improve the Performance of Screening for Prostate Cancer |
| NCT01365143 | PHASE4 | TERMINATED | Prospective Randomized Trial Comparing Robotic Versus Open Radical Prostatectomy |
| NCT01379742 | PHASE4 | UNKNOWN | Comparison of Between ThinSeed™ and OncoSeed™ for Permanent Prostate Brachytherapy |
| NCT01486563 | PHASE4 | COMPLETED | Hydroxyethyl Starch and Renal Function After Radical Prostatectomy |
| NCT01511874 | PHASE4 | COMPLETED | Efficacy and Safety Study of ELIGARD 22.5mg With Prostate Cancer |
| NCT01512472 | PHASE4 | TERMINATED | Firmagon (Degarelix) Intermittent Therapy |
| NCT01547416 | PHASE4 | COMPLETED | The Effect of Combined General/Epidural Anesthesia Versus General Anesthesia on Diaphragmatic Function |
| NCT01571544 | PHASE4 | COMPLETED | The Use of Thermal Suits as Preventing Hypothermia During Surgery |
| NCT01581749 | PHASE4 | UNKNOWN | Evaluation of Truebeam for Low-Intermediate Risk Prostate Cancer |
| NCT01649635 | PHASE4 | COMPLETED | Study of Cabazitaxel Combined With Prednisone and Prophylaxis of Neutropenia Complications in the Treatment of Patients With Metastatic Castration-resistant Prostate Cancer |
Related Atlas pages
- Associated diseases: prostate cancer, hereditary, 1, multisystem inflammatory syndrome in children and adults
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): multiple sclerosis, multisystem inflammatory syndrome in children and adults, ovarian cancer, prostate cancer, prostate cancer, hereditary, 1