RNF149
gene geneOn this page
Also known as FLJ90504
Summary
RNF149 (ring finger protein 149, HGNC:23137) is a protein-coding gene on chromosome 2q11.2, encoding E3 ubiquitin-protein ligase RNF149 (Q8NC42). E3 ubiquitin-protein ligase.
Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within cellular response to xenobiotic stimulus; negative regulation of MAPK cascade; and regulation of protein stability. Located in membrane.
Source: NCBI Gene 284996 — RefSeq curated summary.
At a glance
- GWAS associations: 2
- Clinical variants (ClinVar): 37 total
- Druggable target: yes
- MANE Select transcript:
NM_173647
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:23137 |
| Approved symbol | RNF149 |
| Name | ring finger protein 149 |
| Location | 2q11.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ90504 |
| Ensembl gene | ENSG00000163162 |
| Ensembl biotype | protein_coding |
| Entrez | 284996 |
Gene structure
Transcript identifiers
Ensembl transcripts: 14 — 9 protein_coding, 3 retained_intron, 1 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined
ENST00000295317, ENST00000424632, ENST00000463726, ENST00000478404, ENST00000485752, ENST00000490553, ENST00000878916, ENST00000878917, ENST00000878918, ENST00000878919, ENST00000878920, ENST00000878921, ENST00000878922, ENST00000963872
RefSeq mRNA: 1 — MANE Select: NM_173647
NM_173647
CCDS: CCDS2051
Canonical transcript exons
ENST00000295317 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001072165 | 101294014 | 101294082 |
| ENSE00001072167 | 101294931 | 101295181 |
| ENSE00001072168 | 101288973 | 101289055 |
| ENSE00001130251 | 101286081 | 101286177 |
| ENSE00001164142 | 101275601 | 101277281 |
| ENSE00001783996 | 101308129 | 101308701 |
| ENSE00003577829 | 101281859 | 101282057 |
Expression profiles
Bgee: expression breadth ubiquitous, 262 present calls, max score 99.16.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 52.1482 / max 3238.0759, expressed in 1821 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 29937 | 51.0007 | 1821 |
| 29938 | 1.0168 | 778 |
| 29939 | 0.1307 | 55 |
Top tissues by expression
262 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| blood | UBERON:0000178 | 99.16 | gold quality |
| monocyte | CL:0000576 | 98.52 | gold quality |
| leukocyte | CL:0000738 | 98.48 | gold quality |
| spleen | UBERON:0002106 | 98.01 | gold quality |
| granulocyte | CL:0000094 | 97.99 | gold quality |
| right lung | UBERON:0002167 | 97.69 | gold quality |
| bone marrow cell | CL:0002092 | 97.56 | gold quality |
| oviduct epithelium | UBERON:0004804 | 97.24 | gold quality |
| buccal mucosa cell | CL:0002336 | 97.11 | gold quality |
| upper arm skin | UBERON:0004263 | 96.96 | gold quality |
| vermiform appendix | UBERON:0001154 | 96.80 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 96.80 | gold quality |
| bone marrow | UBERON:0002371 | 96.79 | gold quality |
| upper lobe of lung | UBERON:0008948 | 96.59 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 96.32 | gold quality |
| pericardium | UBERON:0002407 | 96.31 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 96.26 | gold quality |
| penis | UBERON:0000989 | 96.07 | gold quality |
| cartilage tissue | UBERON:0002418 | 96.06 | gold quality |
| skin of abdomen | UBERON:0001416 | 96.03 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 96.00 | gold quality |
| esophagus mucosa | UBERON:0002469 | 95.85 | gold quality |
| skin of leg | UBERON:0001511 | 95.77 | gold quality |
| lower lobe of lung | UBERON:0008949 | 95.74 | gold quality |
| zone of skin | UBERON:0000014 | 95.70 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 95.61 | gold quality |
| vagina | UBERON:0000996 | 95.58 | gold quality |
| body of pancreas | UBERON:0001150 | 95.47 | gold quality |
| omental fat pad | UBERON:0010414 | 95.40 | gold quality |
| peritoneum | UBERON:0002358 | 95.39 | gold quality |
Single-cell (SCXA)
Detected in 7 experiment(s), a significant marker in 7.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-15 | yes | 1100.04 |
| E-MTAB-7052 | yes | 464.15 |
| E-CURD-46 | yes | 16.06 |
| E-MTAB-9801 | yes | 8.57 |
| E-CURD-88 | yes | 4.34 |
| E-CURD-119 | yes | 4.31 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): STAT3
miRNA regulators (miRDB)
108 targeting RNF149, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-3120-5P | 100.00 | 65.56 | 965 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-LET-7F-2-3P | 99.98 | 70.98 | 2588 |
| HSA-MIR-1185-1-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-1185-2-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-4666A-3P | 99.96 | 71.71 | 3434 |
| HSA-MIR-1250-3P | 99.96 | 70.04 | 4038 |
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-548AA | 99.96 | 70.64 | 3753 |
| HSA-MIR-548AP-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-548T-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-548AB | 99.95 | 71.31 | 3488 |
| HSA-MIR-559 | 99.95 | 72.28 | 3609 |
| HSA-MIR-548A-5P | 99.94 | 71.27 | 3482 |
| HSA-MIR-548AD-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AE-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AK | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AM-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AP-5P | 99.94 | 71.14 | 3489 |
| HSA-MIR-548AQ-5P | 99.94 | 71.34 | 3426 |
Literature-anchored findings (GeneRIF, showing 1)
- Data show that RNF149 (RING finger protein 149) interacts with wild-type BRAF. (PMID:22628551)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Rnf149 | ENSMUSG00000048234 |
| rattus_norvegicus | Rnf149 | ENSRNOG00000013946 |
Paralogs (9): RNF13 (ENSG00000082996), RNF215 (ENSG00000099999), ZNRF4 (ENSG00000105428), RNF167 (ENSG00000108523), RNF130 (ENSG00000113269), RNF128 (ENSG00000133135), RNF150 (ENSG00000170153), RNF133 (ENSG00000188050), RNF148 (ENSG00000235631)
Protein
Protein identifiers
E3 ubiquitin-protein ligase RNF149 — Q8NC42 (reviewed: Q8NC42)
Alternative names: DNA polymerase-transactivated protein 2, RING finger protein 149, RING-type E3 ubiquitin transferase RNF149
All UniProt accessions (2): Q8NC42, F8WCD0
UniProt curated annotations — full annotation on UniProt →
Function. E3 ubiquitin-protein ligase. Ubiquitinates BRAF, inducing its proteasomal degradation.
Subcellular location. Membrane.
Domain organisation. The RING-type zinc finger domain mediates binding to an E2 ubiquitin-conjugating enzyme.
Pathway. Protein modification; protein ubiquitination.
RefSeq proteins (1): NP_775918* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001841 | Znf_RING | Domain |
| IPR003137 | PA_domain | Domain |
| IPR013083 | Znf_RING/FYVE/PHD | Homologous_superfamily |
| IPR042712 | RNF149_RING-H2 | Domain |
| IPR046450 | PA_dom_sf | Homologous_superfamily |
Pfam: PF02225, PF13639
UniProt features (15 total): sequence variant 4, glycosylation site 2, compositionally biased region 2, signal peptide 1, chain 1, transmembrane region 1, domain 1, zinc finger region 1, region of interest 1, modified residue 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8NC42-F1 | 75.15 | 0.37 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 345
Glycosylation sites (2): 145, 52
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 245 (showing top):
GSE45365_NK_CELL_VS_CD11B_DC_DN, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, MCBRYAN_TERMINAL_END_BUD_UP, GOBP_NEGATIVE_REGULATION_OF_MAPK_CASCADE, BRUECKNER_TARGETS_OF_MIRLET7A3_DN, GOBP_NEGATIVE_REGULATION_OF_INTRACELLULAR_SIGNAL_TRANSDUCTION, FOSTER_TOLERANT_MACROPHAGE_DN, MARTINEZ_RB1_TARGETS_DN, MCBRYAN_PUBERTAL_BREAST_3_4WK_UP, MCBRYAN_PUBERTAL_BREAST_5_6WK_UP, GOBP_POST_TRANSLATIONAL_PROTEIN_MODIFICATION, GOBP_REGULATION_OF_PROTEIN_STABILITY, GUO_HEX_TARGETS_DN, GRYDER_PAX3FOXO1_ENHANCERS_IN_TADS, CHANDRAN_METASTASIS_UP
GO Biological Process (5): ubiquitin-dependent protein catabolic process (GO:0006511), protein ubiquitination (GO:0016567), regulation of protein stability (GO:0031647), negative regulation of MAPK cascade (GO:0043409), cellular response to xenobiotic stimulus (GO:0071466)
GO Molecular Function (4): zinc ion binding (GO:0008270), ubiquitin protein ligase activity (GO:0061630), transferase activity (GO:0016740), metal ion binding (GO:0046872)
GO Cellular Component (5): cytoplasm (GO:0005737), late endosome (GO:0005770), endoplasmic reticulum (GO:0005783), Golgi apparatus (GO:0005794), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| cytoplasm | 2 |
| endomembrane system | 2 |
| intracellular membrane-bounded organelle | 2 |
| protein ubiquitination | 1 |
| modification-dependent protein catabolic process | 1 |
| protein modification by small protein conjugation | 1 |
| regulation of biological quality | 1 |
| MAPK cascade | 1 |
| regulation of MAPK cascade | 1 |
| negative regulation of intracellular signal transduction | 1 |
| response to xenobiotic stimulus | 1 |
| cellular response to chemical stimulus | 1 |
| transition metal ion binding | 1 |
| ubiquitin-protein transferase activity | 1 |
| ubiquitin-like protein ligase activity | 1 |
| catalytic activity | 1 |
| cation binding | 1 |
| intracellular anatomical structure | 1 |
| endosome | 1 |
Protein interactions and networks
STRING
824 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RNF149 | ZNF319 | Q9P2F9 | 517 |
| RNF149 | KAAG1 | Q9UBP8 | 433 |
| RNF149 | TBC1D8 | O95759 | 409 |
| RNF149 | ZNF805 | Q5CZA5 | 400 |
| RNF149 | ZNF207 | O43670 | 383 |
| RNF149 | FAM151B | Q6UXP7 | 378 |
| RNF149 | JOSD1 | Q15040 | 365 |
| RNF149 | SETDB2 | Q96T68 | 362 |
| RNF149 | RNFT1 | Q5M7Z0 | 358 |
| RNF149 | RNF25 | Q96BH1 | 347 |
| RNF149 | LRRC57 | Q8N9N7 | 346 |
| RNF149 | ANO10 | Q9NW15 | 338 |
| RNF149 | LONRF3 | Q496Y0 | 336 |
| RNF149 | UBA2 | Q9UBT2 | 334 |
| RNF149 | B3GNT4 | Q9C0J1 | 325 |
IntAct
101 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| LSMEM2 | STX7 | psi-mi:“MI:0914”(association) | 0.740 |
| SLC20A1 | LIN7A | psi-mi:“MI:0914”(association) | 0.640 |
| PDGFRB | PIK3R2 | psi-mi:“MI:0914”(association) | 0.610 |
| MANSC1 | KLRG2 | psi-mi:“MI:0914”(association) | 0.530 |
| TSPAN3 | MAP1LC3B2 | psi-mi:“MI:0914”(association) | 0.530 |
| TSPAN17 | UPK3BL1 | psi-mi:“MI:0914”(association) | 0.530 |
| PCDHB7 | C2CD2L | psi-mi:“MI:0914”(association) | 0.530 |
| ACVR1 | BMPR1A | psi-mi:“MI:0914”(association) | 0.530 |
| MRAP2 | GOLIM4 | psi-mi:“MI:0914”(association) | 0.530 |
| MRAP2 | PODXL | psi-mi:“MI:0914”(association) | 0.530 |
| DLK1 | SCAMP3 | psi-mi:“MI:0914”(association) | 0.530 |
| HFE | ADAM10 | psi-mi:“MI:0914”(association) | 0.530 |
| KCNE3 | RIOK3 | psi-mi:“MI:0914”(association) | 0.530 |
| SNAP23 | psi-mi:“MI:0914”(association) | 0.350 | |
| LAMP1 | HAX1 | psi-mi:“MI:0914”(association) | 0.350 |
| BTNL8 | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| TNFRSF10A | MAP1LC3B2 | psi-mi:“MI:0914”(association) | 0.350 |
| RUSF1 | MAP1LC3B2 | psi-mi:“MI:0914”(association) | 0.350 |
| TPCN2 | DDX11L8 | psi-mi:“MI:0914”(association) | 0.350 |
| PCDHGB4 | FAM171A2 | psi-mi:“MI:0914”(association) | 0.350 |
| TMEM30A | UPK3BL1 | psi-mi:“MI:0914”(association) | 0.350 |
| SLC20A1 | MPP2 | psi-mi:“MI:0914”(association) | 0.350 |
| MRAP2 | GOSR1 | psi-mi:“MI:0914”(association) | 0.350 |
| LITAF | SDCBP | psi-mi:“MI:0914”(association) | 0.350 |
| ARRDC3 | ZNF593 | psi-mi:“MI:0914”(association) | 0.350 |
| HEPACAM2 | TNFRSF10B | psi-mi:“MI:0914”(association) | 0.350 |
| TMEM231 | TNFRSF10B | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (640): RNF149 (Affinity Capture-MS), RNF149 (Affinity Capture-MS), RNF149 (Affinity Capture-MS), RNF149 (Affinity Capture-MS), RNF149 (Affinity Capture-MS), RNF149 (Affinity Capture-MS), RNF149 (Affinity Capture-MS), RNF149 (Affinity Capture-MS), RNF149 (Affinity Capture-MS), RNF149 (Affinity Capture-MS), RNF149 (Affinity Capture-MS), RNF149 (Affinity Capture-MS), RNF149 (Affinity Capture-MS), RNF149 (Affinity Capture-MS), RNF149 (Affinity Capture-MS)
ESM2 similar proteins: A1L3I3, A2A699, A2AWH2, A4IHZ3, A6NKQ9, A6QNY1, A8MVW0, B4R1D8, B6VH76, B6VH77, B6VH79, D3YY23, O00220, O43278, O55034, O75074, O88204, O95502, P08751, P21563, P22618, P48778, Q04756, Q3U2C5, Q3U4N7, Q496H8, Q4R6Y5, Q4TUC0, Q5HZW5, Q6QNF4, Q7TPG6, Q7TQH7, Q7Z4F1, Q86T13, Q86VZ4, Q8BY98, Q8C2B3, Q8C4W3, Q8CB67, Q8IXA5
Diamond homologs: A5WWA0, E9QAU8, G3X9R7, O22197, O22755, O43567, O54965, O64763, P0C034, P0CH30, P0DPR2, Q06003, Q07G42, Q08D68, Q0II22, Q0VD51, Q10R93, Q14B02, Q29RU0, Q2TA44, Q3U2C5, Q4KLR8, Q4R6Y5, Q5NCP0, Q5RCV8, Q5RF74, Q5SPX3, Q5SSZ7, Q5XF85, Q641J8, Q66HG0, Q68DV7, Q69U49, Q6AY01, Q6DIP3, Q6IRP0, Q6NML0, Q6NQG7, Q6NRX0, Q6Y290
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| Ub:E2 | “up-regulates activity” | RNF149 | ubiquitination |
| RNF149 | “down-regulates quantity by destabilization” | BRAF | polyubiquitination |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 123 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Interferon gamma signaling | 6 | 10.8× | 2e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| T cell receptor signaling pathway | 8 | 12.2× | 3e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
37 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 26 |
| Likely benign | 2 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1362 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:101281853:GCTCA:G | donor_loss | 1.0000 |
| 2:101281854:CTCA:C | donor_loss | 1.0000 |
| 2:101281855:TCA:T | donor_loss | 1.0000 |
| 2:101281856:CACCT:C | donor_loss | 1.0000 |
| 2:101281857:A:AC | donor_gain | 1.0000 |
| 2:101281858:C:CC | donor_gain | 1.0000 |
| 2:101281858:C:CG | donor_loss | 1.0000 |
| 2:101282054:CTCC:C | acceptor_gain | 1.0000 |
| 2:101282059:T:TC | acceptor_gain | 1.0000 |
| 2:101282066:T:C | acceptor_gain | 1.0000 |
| 2:101282066:T:TC | acceptor_gain | 1.0000 |
| 2:101282072:C:CT | acceptor_gain | 1.0000 |
| 2:101288971:A:AC | donor_gain | 1.0000 |
| 2:101288972:C:CC | donor_gain | 1.0000 |
| 2:101294084:T:C | acceptor_gain | 1.0000 |
| 2:101295177:TGTTC:T | acceptor_gain | 1.0000 |
| 2:101295180:TC:T | acceptor_gain | 1.0000 |
| 2:101295181:CC:C | acceptor_gain | 1.0000 |
| 2:101295181:CCTG:C | acceptor_loss | 1.0000 |
| 2:101295182:C:CC | acceptor_gain | 1.0000 |
| 2:101281858:CCTAG:C | donor_gain | 0.9900 |
| 2:101281862:G:C | donor_gain | 0.9900 |
| 2:101282053:TCTCC:T | acceptor_gain | 0.9900 |
| 2:101282054:CTCCC:C | acceptor_gain | 0.9900 |
| 2:101282055:TCC:T | acceptor_gain | 0.9900 |
| 2:101282055:TCCC:T | acceptor_gain | 0.9900 |
| 2:101282056:CC:C | acceptor_gain | 0.9900 |
| 2:101282056:CCC:C | acceptor_gain | 0.9900 |
| 2:101282057:CC:C | acceptor_gain | 0.9900 |
| 2:101282058:C:CC | acceptor_gain | 0.9900 |
AlphaMissense
2597 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 2:101286115:C:G | C309S | 1.000 |
| 2:101286116:A:T | C309S | 1.000 |
| 2:101286125:A:G | C306R | 1.000 |
| 2:101286144:C:A | W299C | 1.000 |
| 2:101286144:C:G | W299C | 1.000 |
| 2:101286146:A:G | W299R | 1.000 |
| 2:101286146:A:T | W299R | 1.000 |
| 2:101286156:G:C | C295W | 1.000 |
| 2:101286157:C:T | C295Y | 1.000 |
| 2:101286158:A:G | C295R | 1.000 |
| 2:101286168:A:C | F291L | 1.000 |
| 2:101286168:A:T | F291L | 1.000 |
| 2:101286170:A:G | F291L | 1.000 |
| 2:101289029:A:C | C269W | 1.000 |
| 2:101289031:A:G | C269R | 1.000 |
| 2:101286112:T:A | K310I | 0.999 |
| 2:101286114:A:C | C309W | 0.999 |
| 2:101286115:C:A | C309F | 0.999 |
| 2:101286115:C:T | C309Y | 0.999 |
| 2:101286116:A:G | C309R | 0.999 |
| 2:101286121:G:T | P307Q | 0.999 |
| 2:101286122:G:A | P307S | 0.999 |
| 2:101286123:A:C | C306W | 0.999 |
| 2:101286124:C:G | C306S | 0.999 |
| 2:101286124:C:T | C306Y | 0.999 |
| 2:101286125:A:C | C306G | 0.999 |
| 2:101286125:A:T | C306S | 0.999 |
| 2:101286142:A:G | L300P | 0.999 |
| 2:101286157:C:A | C295F | 0.999 |
| 2:101286157:C:G | C295S | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000017454 (2:101287388 T>C), RS1000051823 (2:101303370 A>C), RS1000112217 (2:101286001 TTGTTTCTAGTCAATAATGAAACTGAA>T), RS1000146863 (2:101294170 G>A), RS1000215349 (2:101296851 T>A), RS1000272204 (2:101302870 C>G,T), RS1000302319 (2:101272201 G>A,T), RS1000388412 (2:101291059 T>A), RS1000413495 (2:101308865 C>T), RS1000414478 (2:101310504 A>G), RS1000489782 (2:101310263 C>T), RS1000669921 (2:101298586 A>C,T), RS1000722437 (2:101304721 T>C), RS1000725474 (2:101277491 C>A,T), RS1000818170 (2:101297165 C>A,T)
Disease associations
OMIM: gene `` | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000745_14 | Pancreatic cancer | 4.000000e-06 |
| GCST009391_1106 | Metabolite levels | 9.000000e-06 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0010447 | 3-hydroxyanthranilic acid measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6195769 (PROTEIN-PROTEIN INTERACTION)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
33 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Cyclosporine | decreases expression, increases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| GSK-J4 | increases expression | 1 |
| ethylbenzene | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| arsenite | increases reaction, affects binding | 1 |
| methylparaben | increases expression | 1 |
| ochratoxin A | decreases expression | 1 |
| 2-xylene | increases expression | 1 |
| beta-methylcholine | affects expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| perfluorooctane sulfonic acid | increases expression | 1 |
| corosolic acid | increases expression | 1 |
| abrine | decreases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Temozolomide | increases expression | 1 |
| Sunitinib | increases expression | 1 |
| Gemcitabine | increases expression | 1 |
| Arsenic | increases expression | 1 |
| Benzene | increases expression | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Calcitriol | increases expression | 1 |
| Gold | decreases expression | 1 |
| Methylene Chloride | increases expression | 1 |
| Phenobarbital | affects expression | 1 |
| Plant Extracts | increases expression, affects cotreatment | 1 |
| Smoke | decreases expression | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
| Toluene | increases expression | 1 |
| Trichloroethylene | increases expression | 1 |
ChEMBL screening assays
11 unique, capped per target: 11 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL6076617 | Binding | SiHyT-mediated degrader activity at RNF149/EGFR mutant in human HCC827 cels assessed as induction of EGFR degradation at 0.1 uM cells incubated in serum-free media for 8 hrs followed by incubation with compound for 24 hrs by western blot an | Development of Novel Silicon-Based Hydrophobic Tags (SiHyT) for Targeted Proteins Degradation. — J Med Chem |
Cellosaurus cell lines
2 cell lines: 1 cancer cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B2DX | Abcam HeLa RNF149 KO | Cancer cell line | Female |
| CVCL_D9QS | Ubigene HEK293 RNF149 KO | Transformed cell line | Female |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.