RNF157
gene geneOn this page
Also known as KIAA1917
Summary
RNF157 (ring finger protein 157, HGNC:29402) is a protein-coding gene on chromosome 17q25.1, encoding E3 ubiquitin ligase RNF157 (Q96PX1). E3 ubiquitin ligase that ubiquitinates APBB1 for its degradation by the proteasome and thus prevents apoptosis and promotes survival of neurons.
Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in negative regulation of apoptotic process; positive regulation of dendrite extension; and protein ubiquitination. Predicted to be located in cell body. Predicted to be active in cytoplasm.
Source: NCBI Gene 114804 — RefSeq curated summary.
At a glance
- GWAS associations: 7
- Clinical variants (ClinVar): 120 total — 1 pathogenic
- MANE Select transcript:
NM_052916
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:29402 |
| Approved symbol | RNF157 |
| Name | ring finger protein 157 |
| Location | 17q25.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA1917 |
| Ensembl gene | ENSG00000141576 |
| Ensembl biotype | protein_coding |
| OMIM | 621044 |
| Entrez | 114804 |
Gene structure
Transcript identifiers
Ensembl transcripts: 12 — 8 protein_coding, 3 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000269391, ENST00000319945, ENST00000589317, ENST00000589912, ENST00000591355, ENST00000591615, ENST00000592271, ENST00000592869, ENST00000593155, ENST00000647930, ENST00000970079, ENST00000970080
RefSeq mRNA: 2 — MANE Select: NM_052916
NM_001330501, NM_052916
CCDS: CCDS32740, CCDS82208
Canonical transcript exons
ENST00000269391 — 19 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000949858 | 76164748 | 76164795 |
| ENSE00000949859 | 76162552 | 76162623 |
| ENSE00000949860 | 76161843 | 76162002 |
| ENSE00000949862 | 76161535 | 76161647 |
| ENSE00001058576 | 76152355 | 76152465 |
| ENSE00001058579 | 76154283 | 76154328 |
| ENSE00001058580 | 76158393 | 76158501 |
| ENSE00001058582 | 76165502 | 76165545 |
| ENSE00001058584 | 76166461 | 76166527 |
| ENSE00001058585 | 76173702 | 76173790 |
| ENSE00001118002 | 76156210 | 76156321 |
| ENSE00001167011 | 76167009 | 76167126 |
| ENSE00001167040 | 76167651 | 76167797 |
| ENSE00001194206 | 76159335 | 76159573 |
| ENSE00001907496 | 76142474 | 76145353 |
| ENSE00002501603 | 76212364 | 76212482 |
| ENSE00002766067 | 76240153 | 76240493 |
| ENSE00003475346 | 76155562 | 76155734 |
| ENSE00003651252 | 76155252 | 76155317 |
Expression profiles
Bgee: expression breadth ubiquitous, 208 present calls, max score 97.36.
FANTOM5 (CAGE): breadth broad, TPM avg 9.7722 / max 170.3981, expressed in 908 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 168184 | 5.1371 | 840 |
| 168183 | 3.9325 | 639 |
| 168185 | 0.3066 | 139 |
| 168178 | 0.1672 | 71 |
| 168182 | 0.1433 | 89 |
| 208379 | 0.0854 | 33 |
Top tissues by expression
257 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| lateral nuclear group of thalamus | UBERON:0002736 | 97.36 | gold quality |
| right frontal lobe | UBERON:0002810 | 96.26 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 95.99 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 95.80 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 95.54 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 95.29 | gold quality |
| prefrontal cortex | UBERON:0000451 | 95.28 | gold quality |
| frontal cortex | UBERON:0001870 | 95.15 | gold quality |
| neocortex | UBERON:0001950 | 94.99 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 94.67 | gold quality |
| gastrocnemius | UBERON:0001388 | 94.61 | gold quality |
| Ammon’s horn | UBERON:0001954 | 94.59 | gold quality |
| cerebral cortex | UBERON:0000956 | 94.53 | gold quality |
| postcentral gyrus | UBERON:0002581 | 94.42 | gold quality |
| parietal lobe | UBERON:0001872 | 94.36 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 94.33 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 94.26 | gold quality |
| amygdala | UBERON:0001876 | 94.19 | gold quality |
| putamen | UBERON:0001874 | 94.05 | gold quality |
| caudate nucleus | UBERON:0001873 | 93.99 | gold quality |
| substantia nigra | UBERON:0002038 | 93.77 | gold quality |
| hypothalamus | UBERON:0001898 | 93.57 | gold quality |
| pons | UBERON:0000988 | 93.56 | gold quality |
| muscle of leg | UBERON:0001383 | 93.51 | gold quality |
| midbrain | UBERON:0001891 | 93.45 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 93.30 | gold quality |
| skeletal muscle organ | UBERON:0014892 | 93.21 | gold quality |
| nucleus accumbens | UBERON:0001882 | 92.99 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 92.88 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 92.67 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 4.69 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
133 targeting RNF157, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4476 | 100.00 | 68.18 | 2030 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-432-3P | 100.00 | 67.86 | 705 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-1193 | 100.00 | 65.93 | 529 |
| HSA-MIR-1252-5P | 100.00 | 69.80 | 2774 |
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-4534 | 99.99 | 66.58 | 1907 |
| HSA-MIR-32-5P | 99.98 | 75.21 | 1964 |
| HSA-MIR-92A-3P | 99.98 | 75.21 | 1960 |
| HSA-MIR-92B-3P | 99.98 | 75.25 | 1955 |
| HSA-MIR-103A-3P | 99.98 | 69.14 | 1595 |
| HSA-MIR-107 | 99.98 | 69.14 | 1595 |
| HSA-MIR-25-3P | 99.98 | 74.60 | 1817 |
| HSA-MIR-363-3P | 99.98 | 74.72 | 1821 |
| HSA-MIR-367-3P | 99.98 | 74.83 | 1819 |
| HSA-MIR-4650-5P | 99.98 | 64.69 | 999 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-MIR-3605-5P | 99.96 | 67.12 | 932 |
| HSA-MIR-6778-3P | 99.96 | 67.29 | 2693 |
| HSA-MIR-4267 | 99.96 | 66.53 | 2368 |
| HSA-MIR-8082 | 99.95 | 67.27 | 1170 |
| HSA-MIR-6721-5P | 99.93 | 68.92 | 2981 |
| HSA-MIR-539-5P | 99.93 | 70.30 | 2855 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-605-3P | 99.88 | 69.22 | 1833 |
Literature-anchored findings (GeneRIF, showing 1)
- Data suggest that RNF157 plays role as downstream effector of both PI3K signaling and MAPK signaling in melanoma cell line; regulation of RNF157 expression is cell-cycle-dependent in melanoma cell line; both CDH1 and CDK2 are involved in modulation of RNF157 stability during melanoma cell proliferation. (PI3K = phosphatidylinositol 3-kinase; CDH1 = E-cadherin; CDK2 = cyclin-dependent kinase 2) (PMID:28655764)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | rnf157 | ENSDARG00000057481 |
| mus_musculus | Rnf157 | ENSMUSG00000052949 |
| rattus_norvegicus | Rnf157 | ENSRNOG00000049862 |
| drosophila_melanogaster | Mrgn1 | FBGN0030514 |
| caenorhabditis_elegans | WBGENE00007529 |
Paralogs (1): MGRN1 (ENSG00000102858)
Protein
Protein identifiers
E3 ubiquitin ligase RNF157 — Q96PX1 (reviewed: Q96PX1)
Alternative names: RING finger protein 157, RING-type E3 ubiquitin transferase RNF157
All UniProt accessions (5): A0A3B3ISM3, Q96PX1, K7EKB4, K7ENU4, K7ER42
UniProt curated annotations — full annotation on UniProt →
Function. E3 ubiquitin ligase that ubiquitinates APBB1 for its degradation by the proteasome and thus prevents apoptosis and promotes survival of neurons. Has a dual role in neurons as it is also required for dendrite growth and maintenance for which its ligase activity is not critical. May act as a scaffold molecule to regulate this process. Acts as a downstream effector of the interconnected PI3K and MAPK signaling pathways and thus participates in the regulation of the cell cycle.
Subunit / interactions. Interacts with APBB1. Interacts with CHD1; CHD1-binding controls RNF157 stability. Interacts with ATRN, MEGF8, TECR, MSI2, PLRG1, BYSL, MTERF3, PSMA1, MRPS18B, PRPF4, FASTKD2, SLC25A1, SMU1, CNOT9, MRPS2, MAGT1, FXR2, EMD, PSMD8, HDAC1, RAN, HSD17B12, TXNDC5 and MRPL19.
Subcellular location. Cytoplasm.
Post-translational modifications. Phosphorylation at Ser-660, Ser-661, Ser-662 and Ser-663 downstream of the PI3K and MAPK pathways influences the E3 ligase activity and stability of RNF157 during the cell cycle in an anaphase-promoting complex/cyclosome-CDH1-dependent manner.
Domain organisation. The D-box motifs play a key role in RNF157 stabilization.
Induction. Expression is cell cycle-specific with higher levels in cells arrested in G1/S and G2/M.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q96PX1-1 | 1 | yes |
| Q96PX1-2 | 2 |
RefSeq proteins (2): NP_001317430, NP_443148* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001841 | Znf_RING | Domain |
| IPR013083 | Znf_RING/FYVE/PHD | Homologous_superfamily |
| IPR045194 | MGRN1/RNF157-like | Family |
| IPR058981 | MGRN1/RNF157-like_N | Domain |
Pfam: PF13920, PF26192
UniProt features (20 total): modified residue 4, compositionally biased region 3, sequence variant 3, region of interest 3, short sequence motif 2, initiator methionine 1, chain 1, lipid moiety-binding region 1, splice variant 1, zinc finger region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96PX1-F1 | 61.06 | 0.27 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (5): 660, 661, 662, 663, 2
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 165 (showing top):
GSE45365_NK_CELL_VS_CD8A_DC_DN, GOBP_REGULATION_OF_CELL_MORPHOGENESIS, GOBP_NEURON_PROJECTION_EXTENSION, GOBP_REGULATION_OF_DEVELOPMENTAL_GROWTH, GOBP_GROWTH, GOBP_NEUROGENESIS, PATIL_LIVER_CANCER, GOBP_POSITIVE_REGULATION_OF_CELL_GROWTH, GOBP_POST_TRANSLATIONAL_PROTEIN_MODIFICATION, GOBP_POSITIVE_REGULATION_OF_DEVELOPMENTAL_GROWTH, GOBP_POSITIVE_REGULATION_OF_GROWTH, GOBP_DEVELOPMENTAL_CELL_GROWTH, GOBP_CELL_PROJECTION_ORGANIZATION, GOBP_POSITIVE_REGULATION_OF_DEVELOPMENTAL_PROCESS, BREDEMEYER_RAG_SIGNALING_NOT_VIA_ATM_UP
GO Biological Process (3): protein ubiquitination (GO:0016567), negative regulation of apoptotic process (GO:0043066), positive regulation of dendrite extension (GO:1903861)
GO Molecular Function (5): zinc ion binding (GO:0008270), ubiquitin protein ligase activity (GO:0061630), ubiquitin-protein transferase activity (GO:0004842), transferase activity (GO:0016740), metal ion binding (GO:0046872)
GO Cellular Component (2): cytoplasm (GO:0005737), cell body (GO:0044297)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| protein modification by small protein conjugation | 1 |
| apoptotic process | 1 |
| regulation of apoptotic process | 1 |
| negative regulation of programmed cell death | 1 |
| positive regulation of cell growth | 1 |
| positive regulation of developmental growth | 1 |
| dendrite extension | 1 |
| regulation of dendrite extension | 1 |
| transition metal ion binding | 1 |
| ubiquitin-protein transferase activity | 1 |
| ubiquitin-like protein ligase activity | 1 |
| ubiquitin-like protein transferase activity | 1 |
| catalytic activity | 1 |
| cation binding | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
608 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RNF157 | MOSMO | Q8NHV5 | 616 |
| RNF157 | MEGF8 | Q7Z7M0 | 575 |
| RNF157 | CRACD | Q6ZU35 | 548 |
| RNF157 | PRPSAP1 | Q14558 | 496 |
| RNF157 | GPR61 | Q9BZJ8 | 487 |
| RNF157 | BORCS8 | Q96FH0 | 479 |
| RNF157 | SAMD3 | Q8N6K7 | 450 |
| RNF157 | ZNF594 | Q96JF6 | 447 |
| RNF157 | UNC45B | Q8IWX7 | 435 |
| RNF157 | ATRN | O75882 | 434 |
| RNF157 | PABIR3 | Q6P4D5 | 424 |
| RNF157 | GKAP1 | Q5VSY0 | 383 |
| RNF157 | NPIPB15 | A6NHN6 | 380 |
| RNF157 | ATRNL1 | Q5VV63 | 374 |
| RNF157 | FRMD4A | Q9P2Q2 | 372 |
IntAct
5 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ANKRD46 | ATRN | psi-mi:“MI:0914”(association) | 0.640 |
| FBXO2 | TMEM131L | psi-mi:“MI:0914”(association) | 0.530 |
| RNF157 | UBE2G2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| RNF157 | ATRN | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (48): RNF157 (Affinity Capture-Western), RNF157 (Affinity Capture-Western), ATRN (Affinity Capture-MS), MEGF8 (Affinity Capture-MS), TECR (Affinity Capture-MS), MSI2 (Affinity Capture-MS), PLRG1 (Affinity Capture-MS), BYSL (Affinity Capture-MS), MTERF3 (Affinity Capture-MS), PSMA1 (Affinity Capture-MS), MRPS18B (Affinity Capture-MS), PRPF4 (Affinity Capture-MS), FASTKD2 (Affinity Capture-MS), SLC25A1 (Affinity Capture-MS), SMU1 (Affinity Capture-MS)
ESM2 similar proteins: A0A8M3AJY3, A5WUN7, A6QLR3, B5X1P9, E2AB17, F1MJR8, F1QB81, M0R5D6, O00443, O43310, O60291, P03122, P11299, P15304, P42859, P51111, P59438, Q15018, Q1HKZ5, Q1LUT1, Q1LVP6, Q28HX0, Q2PFD7, Q2T9I9, Q3TCJ1, Q3TEL6, Q3UPF5, Q535K8, Q5E9P1, Q5I0F1, Q5RD34, Q5VUB5, Q5XIQ4, Q5ZHS0, Q61194, Q6GR31, Q6INH1, Q6P4W0, Q6PEE2, Q6UWZ7
Diamond homologs: A8MQ27, O60291, O76050, Q0MW30, Q0WS06, Q3TEL6, Q4FE47, Q557E7, Q5M870, Q5XIQ4, Q6INH1, Q6R7D2, Q7ZUL9, Q84ME1, Q8CJC5, Q8VCM5, Q923S6, Q94HV7, Q96EH8, Q96PX1, Q9BR09, Q9D074, Q9D0S4, M0R5D6, Q8LA32, Q9LFH6, Q9S752, A1E2V0, O10296, P41435, P41437, Q4R1J6, Q62210, Q6UWE0, Q8W5R5, Q95M71, Q95M72, Q96P09, Q9FW70, Q9LYW5
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| Ub:E2 | “up-regulates activity” | RNF157 | ubiquitination |
| CDK2 | “up-regulates activity” | RNF157 | phosphorylation |
Disease & clinical
Clinical variants and AI predictions
ClinVar
120 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 86 |
| Likely benign | 4 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 3780010 | NM_052916.3(RNF157):c.207+16830_207+16831del | Pathogenic |
SpliceAI
4372 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:76155651:C:CT | acceptor_gain | 1.0000 |
| 17:76158388:ATTAC:A | donor_loss | 1.0000 |
| 17:76158389:TTA:T | donor_loss | 1.0000 |
| 17:76158390:TA:T | donor_loss | 1.0000 |
| 17:76158392:C:CG | donor_loss | 1.0000 |
| 17:76158392:CCT:C | donor_gain | 1.0000 |
| 17:76159333:A:AC | donor_gain | 1.0000 |
| 17:76159334:C:CC | donor_gain | 1.0000 |
| 17:76159574:C:CC | acceptor_gain | 1.0000 |
| 17:76161528:AACTT:A | donor_loss | 1.0000 |
| 17:76161529:ACTTA:A | donor_loss | 1.0000 |
| 17:76161530:CTT:C | donor_loss | 1.0000 |
| 17:76161531:TTAC:T | donor_loss | 1.0000 |
| 17:76161532:TA:T | donor_loss | 1.0000 |
| 17:76161533:A:AC | donor_gain | 1.0000 |
| 17:76161533:AC:A | donor_loss | 1.0000 |
| 17:76161534:C:CA | donor_gain | 1.0000 |
| 17:76161534:CTGG:C | donor_gain | 1.0000 |
| 17:76161643:GAAGG:G | acceptor_gain | 1.0000 |
| 17:76161644:AAGG:A | acceptor_gain | 1.0000 |
| 17:76161645:AGG:A | acceptor_gain | 1.0000 |
| 17:76161645:AGGC:A | acceptor_loss | 1.0000 |
| 17:76161646:GG:G | acceptor_gain | 1.0000 |
| 17:76161646:GGCT:G | acceptor_loss | 1.0000 |
| 17:76161647:GCT:G | acceptor_loss | 1.0000 |
| 17:76161648:C:CC | acceptor_gain | 1.0000 |
| 17:76161650:G:C | acceptor_gain | 1.0000 |
| 17:76161650:G:GC | acceptor_gain | 1.0000 |
| 17:76161837:GCTTA:G | donor_loss | 1.0000 |
| 17:76161838:CTTAC:C | donor_loss | 1.0000 |
AlphaMissense
4430 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:76161632:A:G | L323P | 1.000 |
| 17:76161635:A:G | L322P | 1.000 |
| 17:76161643:G:C | F319L | 1.000 |
| 17:76161643:G:T | F319L | 1.000 |
| 17:76161645:A:G | F319L | 1.000 |
| 17:76161850:G:C | C315W | 1.000 |
| 17:76161851:C:A | C315F | 1.000 |
| 17:76161851:C:G | C315S | 1.000 |
| 17:76161851:C:T | C315Y | 1.000 |
| 17:76161852:A:G | C315R | 1.000 |
| 17:76161852:A:T | C315S | 1.000 |
| 17:76161854:A:C | I314S | 1.000 |
| 17:76161854:A:G | I314T | 1.000 |
| 17:76161854:A:T | I314N | 1.000 |
| 17:76161857:G:T | P313H | 1.000 |
| 17:76161858:G:A | P313S | 1.000 |
| 17:76161859:G:C | C312W | 1.000 |
| 17:76161860:C:A | C312F | 1.000 |
| 17:76161860:C:G | C312S | 1.000 |
| 17:76161860:C:T | C312Y | 1.000 |
| 17:76161861:A:C | C312G | 1.000 |
| 17:76161861:A:G | C312R | 1.000 |
| 17:76161861:A:T | C312S | 1.000 |
| 17:76161881:A:G | L305P | 1.000 |
| 17:76161881:A:T | L305Q | 1.000 |
| 17:76161892:A:C | C301W | 1.000 |
| 17:76161893:C:A | C301F | 1.000 |
| 17:76161893:C:G | C301S | 1.000 |
| 17:76161893:C:T | C301Y | 1.000 |
| 17:76161894:A:G | C301R | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000050774 (17:76144509 G>A), RS1000063858 (17:76217754 C>T), RS1000083361 (17:76195684 G>A), RS1000108575 (17:76178752 C>A,T), RS1000109133 (17:76188417 C>T), RS1000144384 (17:76150352 T>A,C), RS1000169277 (17:76218295 A>T), RS1000172232 (17:76211561 A>G), RS1000207778 (17:76149903 G>A), RS1000286339 (17:76194308 C>G,T), RS1000291720 (17:76162030 A>G,T), RS1000309375 (17:76236377 T>G), RS1000318899 (17:76144598 C>T), RS1000351144 (17:76200114 C>G,T), RS1000376538 (17:76168490 G>C)
Disease associations
OMIM: gene MIM:621044 | disease phenotypes: MIM:194050, MIM:306400
GenCC curated gene-disease
Mondo (2): Williams syndrome (MONDO:0008678), chronic granulomatous disease (MONDO:0018305)
Orphanet (2): Chronic granulomatous disease (Orphanet:379), Williams syndrome (Orphanet:904)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
7 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006396_7 | Disrupted circadian rhythm (low relative amplitude of rest-activity cycles) | 5.000000e-07 |
| GCST90020025_1460 | Waist-to-hip ratio adjusted for BMI | 8.000000e-11 |
| GCST90020025_1461 | Waist-to-hip ratio adjusted for BMI | 2.000000e-15 |
| GCST90020025_1509 | Waist-to-hip ratio adjusted for BMI | 1.000000e-09 |
| GCST90020027_534 | Waist-hip index | 2.000000e-09 |
| GCST90020027_535 | Waist-hip index | 1.000000e-10 |
| GCST90020027_536 | Waist-hip index | 3.000000e-15 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007788 | BMI-adjusted waist-hip ratio |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D006105 | Granulomatous Disease, Chronic | C15.378.553.774.535; C16.320.322.233; C20.673.774.535; C23.550.291.500.423 |
| D018980 | Williams Syndrome | C10.597.606.360.970; C14.280.484.048.750.535.960; C16.131.260.970; C16.320.180.970 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
36 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, affects expression | 7 |
| (+)-JQ1 compound | decreases expression | 2 |
| Arsenic | increases abundance, affects methylation, affects cotreatment, decreases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| methyleugenol | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | affects cotreatment, increases methylation | 1 |
| sodium arsenite | affects cotreatment, decreases expression, increases abundance | 1 |
| manganese chloride | affects cotreatment, decreases expression, increases abundance | 1 |
| potassium chromate(VI) | decreases expression | 1 |
| nickel sulfate | increases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects cotreatment, decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression, increases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression, increases expression | 1 |
| bisphenol S | affects methylation | 1 |
| jinfukang | increases expression | 1 |
| NSC 689534 | affects binding, decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Arsenic Trioxide | increases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Leflunomide | increases expression | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Copper | affects binding, decreases expression | 1 |
| Formaldehyde | decreases expression | 1 |
| Hydrogen Peroxide | decreases expression | 1 |
| Lead | affects expression | 1 |
| Lipopolysaccharides | affects cotreatment, decreases expression | 1 |
| Manganese | affects cotreatment, decreases expression, increases abundance | 1 |
Clinical trials (associated diseases)
93 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00768820 | PHASE4 | RECRUITING | The Psychiatric and Cognitive Phenotypes in Velocardiofacial Syndrome |
| NCT04807517 | PHASE4 | COMPLETED | Buspirone Treatment of Anxiety in Williams Syndrome |
| NCT00001317 | PHASE4 | COMPLETED | A Phase IV Study of Recombinant Human Gamma Interferon in Patients With Chronic Granulomatous Diseases of Childhood |
| NCT00023192 | PHASE3 | COMPLETED | Treatment of Chronic Granulomatous Disease With Allogeneic Stem Cell Transplantation Versus Standard of Care |
| NCT00033982 | PHASE3 | COMPLETED | Posaconazole to Treat Invasive Fungal Infections |
| NCT00876200 | PHASE2 | COMPLETED | Efficacy of Minoxidil in Children With Williams-Beuren Syndrome |
| NCT06087757 | PHASE2 | ACTIVE_NOT_RECRUITING | Clemastine Treatment in Individuals With Williams Syndrome |
| NCT06315699 | PHASE2 | COMPLETED | Clemastine Fumarate in the Treatment of Neurodevelopmental Delays in Williams Syndrome |
| NCT00006417 | PHASE2 | COMPLETED | Modified Stem Cell Transplantation Procedure for Treating Chronic Granulomatous Disease |
| NCT00578643 | PHASE2 | COMPLETED | Matched Unrelated or Non-Genotype Identical Related Donor Transplantation For Chronic Granulomatous Disease |
| NCT00799071 | PHASE2 | COMPLETED | Pharmacokinetics of Posaconazole in Children With Chronic Granulomatous Disease (CGD) |
| NCT01821781 | PHASE2 | ACTIVE_NOT_RECRUITING | Immune Disorder HSCT Protocol |
| NCT01998633 | PHASE2 | COMPLETED | Reduced Intensity Conditioning for Hemophagocytic Syndromes or Selected Primary Immune Deficiencies (BMT CTN 1204) |
| NCT02512679 | PHASE2 | TERMINATED | Related Hematopoietic Stem Cell Transplantation (HSCT) for Genetic Diseases of Blood Cells |
| NCT03333486 | PHASE2 | TERMINATED | Fludarabine Phosphate, Cyclophosphamide, Total Body Irradiation, and Donor Stem Cell Transplant in Treating Patients With Blood Cancer |
| NCT03547830 | PHASE2 | UNKNOWN | Plerixafor/G-CSF as Additional Agents for Conditioning Before HSCT in CGD Patients |
| NCT03983837 | PHASE2 | COMPLETED | Elemental Diet for Treatment of Inflammatory Bowel Disease in Patients With Chronic Granulomatous Disease |
| NCT07284641 | PHASE2 | RECRUITING | Hematopoietic Stem Cell Transplantation (HSCT) for Common Variable Immunodeficiency (CVID) and Other Autoimmune Manifestations of Primary Immune Regulatory Disorders (PIRD) |
| NCT00001476 | PHASE1 | COMPLETED | Gene Therapy for Chronic Granulomatous Diseases - Long-term Follow-up |
| NCT00001515 | PHASE1 | COMPLETED | Diagnostic Effectiveness of Virtual Bronchoscopy |
| NCT00001765 | PHASE1 | COMPLETED | Stem Cell Transplant Following Low-Intensity Chemotherapy to Treat Chronic Granulomatous Disease |
| NCT01917708 | PHASE1 | COMPLETED | Bone Marrow Transplant With Abatacept for Non-Malignant Diseases |
| NCT02609932 | PHASE1 | COMPLETED | Effect of IFN-γ on Innate Immune Cells |
| NCT05189925 | PHASE1 | RECRUITING | NADPH Oxidase Correction in mRNA-transfected Granulocyte-enriched Cells in Chronic Granulomatous Disease (CGD) |
| NCT00004351 | Not specified | COMPLETED | Study of Phenotype and Genotype Correlations in Patients With Contiguous Gene Deletion Syndromes |
| NCT00013962 | Not specified | COMPLETED | Vitamin D Metabolism and the Williams Syndrome |
| NCT01132885 | Not specified | RECRUITING | Defining the Brain Phenotype of Children With Williams Syndrome |
| NCT01793168 | Not specified | RECRUITING | Rare Disease Patient Registry & Natural History Study - Coordination of Rare Diseases at Sanford |
| NCT01864304 | Not specified | COMPLETED | Fat Distribution and Glucose Metabolism in Williams Syndrome |
| NCT02212314 | Not specified | COMPLETED | Response Inhibition Training for Children With Williams Syndrome |
| NCT02692846 | Not specified | COMPLETED | WS-SAVE Study (Williams Syndrome Skin and Vessel Elasticity Study) |
| NCT02706639 | Not specified | COMPLETED | Williams Syndrome (WS) and Supravalvar Aortic Stenosis (SVAS) DNA and Tissue Bank |
| NCT02840448 | Not specified | COMPLETED | Impact of Elastin Mediated Vascular Stiffness on End Organs |
| NCT03758651 | Not specified | COMPLETED | Williams Syndrome Strength, Hormones, Activity & Adiposity, DNA Programming, Eating Study |
| NCT03827525 | Not specified | UNKNOWN | Cognitive and Behavioral Therapy of Anxiety in Williams Syndrome |
| NCT03836300 | Not specified | ENROLLING_BY_INVITATION | Parent and Infant Inter(X)Action Intervention (PIXI) |
| NCT04051086 | Not specified | UNKNOWN | Quantification of Elastin Markers Synthesis in Williams-Beuren Syndrome and 7q11.23 Micro-duplication Syndrome |
| NCT04095585 | Not specified | COMPLETED | Molecular Characterization of Patients Affected by Williams Syndrome and Autism. |
| NCT04463316 | Not specified | RECRUITING | GROWing Up With Rare GENEtic Syndromes |
| NCT04610424 | Not specified | UNKNOWN | Cooperative Parent Mediated Therapy in Children With Fragile X Syndrome and Williams Syndrome |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): chronic granulomatous disease, Williams syndrome