RNF207
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Also known as FLJ46380FLJ32096
Summary
RNF207 (ring finger protein 207, HGNC:32947) is a protein-coding gene on chromosome 1p36.31, encoding RING finger protein 207 (Q6ZRF8). Plays a role in cardiac repolarization possibly by stabilizing membrane expression of the potassium channel KCNH2/HERG, or by assisting its synthesis, folding or export from the endoplasmic reticulum, in a heat shock protein-dependent manner.
Enables Hsp70 protein binding activity and transmembrane transporter binding activity. Involved in positive regulation of gene expression. Located in perinuclear region of cytoplasm.
Source: NCBI Gene 388591 — RefSeq curated summary.
At a glance
- Gene–disease (curated): long QT syndrome (Limited, GenCC)
- GWAS associations: 61
- Clinical variants (ClinVar): 149 total — 1 likely-pathogenic
- MANE Select transcript:
NM_207396
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:32947 |
| Approved symbol | RNF207 |
| Name | ring finger protein 207 |
| Location | 1p36.31 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ46380, FLJ32096 |
| Ensembl gene | ENSG00000158286 |
| Ensembl biotype | protein_coding |
| OMIM | 616923 |
| Entrez | 388591 |
Gene structure
Transcript identifiers
Ensembl transcripts: 27 — 19 protein_coding, 6 retained_intron, 2 protein_coding_CDS_not_defined
ENST00000377939, ENST00000463453, ENST00000466994, ENST00000483336, ENST00000484435, ENST00000485539, ENST00000492476, ENST00000496329, ENST00000496676, ENST00000882098, ENST00000882099, ENST00000882100, ENST00000882101, ENST00000882102, ENST00000882103, ENST00000882104, ENST00000922640, ENST00000951264, ENST00000951265, ENST00000951266, ENST00000951267, ENST00000951268, ENST00000951269, ENST00000951270, ENST00000951271, ENST00000951272, ENST00000951273
RefSeq mRNA: 1 — MANE Select: NM_207396
NM_207396
CCDS: CCDS59
Canonical transcript exons
ENST00000377939 — 18 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001639633 | 6219236 | 6221299 |
| ENSE00001734900 | 6210870 | 6210938 |
| ENSE00001866099 | 6206119 | 6206302 |
| ENSE00003459555 | 6209268 | 6209343 |
| ENSE00003459970 | 6208881 | 6209025 |
| ENSE00003471198 | 6210223 | 6210295 |
| ENSE00003498595 | 6209414 | 6209539 |
| ENSE00003529793 | 6212231 | 6212416 |
| ENSE00003537209 | 6213066 | 6213183 |
| ENSE00003548141 | 6207379 | 6207511 |
| ENSE00003561421 | 6209115 | 6209196 |
| ENSE00003576581 | 6218289 | 6218369 |
| ENSE00003582161 | 6211021 | 6211118 |
| ENSE00003625233 | 6209924 | 6209970 |
| ENSE00003656861 | 6211867 | 6212053 |
| ENSE00003660319 | 6210370 | 6210438 |
| ENSE00003663802 | 6212682 | 6212733 |
| ENSE00003677151 | 6206536 | 6206726 |
Expression profiles
Bgee: expression breadth ubiquitous, 196 present calls, max score 97.90.
FANTOM5 (CAGE): breadth broad, TPM avg 1.7707 / max 53.5990, expressed in 737 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 363 | 1.5599 | 651 |
| 365 | 0.1246 | 67 |
| 364 | 0.0861 | 23 |
Top tissues by expression
247 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| apex of heart | UBERON:0002098 | 97.90 | gold quality |
| right atrium auricular region | UBERON:0006631 | 94.30 | gold quality |
| heart left ventricle | UBERON:0002084 | 93.48 | gold quality |
| metanephros cortex | UBERON:0010533 | 93.27 | gold quality |
| cardiac ventricle | UBERON:0002082 | 93.11 | gold quality |
| cardiac atrium | UBERON:0002081 | 92.67 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 92.36 | gold quality |
| right uterine tube | UBERON:0001302 | 92.17 | gold quality |
| heart | UBERON:0000948 | 91.11 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 90.84 | gold quality |
| cerebellar cortex | UBERON:0002129 | 90.66 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 90.44 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 90.05 | gold quality |
| minor salivary gland | UBERON:0001830 | 89.48 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 88.99 | gold quality |
| cerebellum | UBERON:0002037 | 88.87 | gold quality |
| transverse colon | UBERON:0001157 | 88.80 | gold quality |
| endocervix | UBERON:0000458 | 88.69 | gold quality |
| body of pancreas | UBERON:0001150 | 88.52 | gold quality |
| thyroid gland | UBERON:0002046 | 87.94 | gold quality |
| esophagus mucosa | UBERON:0002469 | 87.94 | gold quality |
| vagina | UBERON:0000996 | 87.20 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 87.02 | gold quality |
| ectocervix | UBERON:0012249 | 86.69 | gold quality |
| prostate gland | UBERON:0002367 | 86.66 | gold quality |
| esophagus | UBERON:0001043 | 86.35 | gold quality |
| mouth mucosa | UBERON:0003729 | 86.29 | gold quality |
| adenohypophysis | UBERON:0002196 | 86.20 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 86.13 | gold quality |
| right frontal lobe | UBERON:0002810 | 85.87 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 4.35 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
1 targets.
| Target | Regulation |
|---|---|
| KCNH2 | Activation |
miRNA regulators (miRDB)
95 targeting RNF207, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3064-3P | 100.00 | 70.09 | 1254 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-6888-3P | 99.97 | 65.95 | 1170 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548J-3P | 99.94 | 72.61 | 4881 |
| HSA-MIR-548AE-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-548AH-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AM-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AQ-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-145-5P | 99.92 | 71.13 | 1836 |
| HSA-MIR-5195-3P | 99.92 | 70.92 | 1877 |
| HSA-MIR-6508-5P | 99.92 | 70.67 | 2465 |
| HSA-MIR-219A-5P | 99.91 | 73.36 | 735 |
| HSA-MIR-7162-3P | 99.89 | 68.16 | 1682 |
| HSA-MIR-4302 | 99.89 | 67.94 | 1187 |
| HSA-MIR-6780A-5P | 99.88 | 66.69 | 2776 |
| HSA-MIR-4782-3P | 99.88 | 73.31 | 735 |
| HSA-MIR-6766-3P | 99.88 | 73.38 | 732 |
| HSA-MIR-8067 | 99.86 | 69.59 | 2260 |
| HSA-MIR-5582-3P | 99.86 | 72.48 | 4221 |
| HSA-MIR-548AR-3P | 99.85 | 71.26 | 3889 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
Literature-anchored findings (GeneRIF, showing 4)
- RNF207 is an important regulator of action potential duration, likely via effects on HERG trafficking and localization in a heat shock protein-dependent manner. (PMID:25281747)
- Data indicate that plasma E3 Ligase Rnf207 (ring finger protein 207) level in acute myocardial infarction patients increased significantly compared with that in healthy people. (PMID:25599194)
- Nonsense mutation of RNF207 gene is associated with Long QT syndrome. (PMID:30542207)
- Disruption of protein quality control of the human ether-a-go-go related gene K(+) channel results in profound long QT syndrome. (PMID:34634443)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | rnf207b | ENSDARG00000012409 |
| danio_rerio | rnf207a | ENSDARG00000091126 |
| mus_musculus | Rnf207 | ENSMUSG00000058498 |
| rattus_norvegicus | Rnf207 | ENSRNOG00000033722 |
| caenorhabditis_elegans | WBGENE00009831 |
Protein
Protein identifiers
RING finger protein 207 — Q6ZRF8 (reviewed: Q6ZRF8)
All UniProt accessions (1): Q6ZRF8
UniProt curated annotations — full annotation on UniProt →
Function. Plays a role in cardiac repolarization possibly by stabilizing membrane expression of the potassium channel KCNH2/HERG, or by assisting its synthesis, folding or export from the endoplasmic reticulum, in a heat shock protein-dependent manner.
Subunit / interactions. Interacts with the core-glycosylated, but not the fully glycosylated form of KCNH2/HERG. Interacts with DNAJA1 and HSPA8. Interacts (via the C-terminus) with HSPA1A; this interaction additively increases KCNH2 expression.
Subcellular location. Cytoplasm.
Polymorphism. Genetic variation in RNF207 may influence the duration of QT interval, a mesure of cardiac repolarization that depends on multiple environmental and genetic contributors. Prolonged or shortened QT intervals predisposes to ventricular arrhythmias and are a risk factor for sudden cardiac death.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q6ZRF8-1 | 1 | yes |
| Q6ZRF8-2 | 2 | |
| Q6ZRF8-3 | 3 | |
| Q6ZRF8-4 | 4 |
RefSeq proteins (1): NP_997279* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000315 | Znf_B-box | Domain |
| IPR001841 | Znf_RING | Domain |
| IPR013083 | Znf_RING/FYVE/PHD | Homologous_superfamily |
| IPR017907 | Znf_RING_CS | Conserved_site |
| IPR018957 | Znf_C3HC4_RING-type | Domain |
| IPR021978 | PML-like_CC | Domain |
| IPR039320 | RNF207 | Family |
Pfam: PF00097, PF00643, PF12126
UniProt features (23 total): splice variant 7, sequence variant 4, binding site 4, zinc finger region 2, coiled-coil region 2, chain 1, mutagenesis site 1, sequence conflict 1, region of interest 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q6ZRF8-F1 | 76.18 | 0.42 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (4): 98; 101; 127; 132
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 25 | loss of kcnh2 up-regulation. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 144 (showing top):
GSE37336_LY6C_POS_VS_NEG_NAIVE_CD4_TCELL_DN, GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_CIRCULATORY_SYSTEM_PROCESS, WHITE_NEUROBLASTOMA_WITH_1P36.3_DELETION, GOBP_SPECIFICATION_OF_SYMMETRY, GOBP_REGULATION_OF_STRIATED_MUSCLE_CONTRACTION, GOBP_REGULATION_OF_CARDIAC_MUSCLE_CELL_MEMBRANE_REPOLARIZATION, GOBP_ANIMAL_ORGAN_MORPHOGENESIS, GOBP_EMBRYONIC_HEART_TUBE_DEVELOPMENT, GOBP_REGULATION_OF_MUSCLE_CONTRACTION, GOBP_MUSCLE_CONTRACTION, GOBP_EMBRYONIC_ORGAN_MORPHOGENESIS, AML_Q6, GOBP_HEART_MORPHOGENESIS
GO Biological Process (5): positive regulation of gene expression (GO:0010628), regulation of cardiac muscle contraction (GO:0055117), regulation of heart looping (GO:1901207), positive regulation of membrane repolarization during ventricular cardiac muscle cell action potential (GO:1905026), positive regulation of membrane repolarization during cardiac muscle cell action potential (GO:1905033)
GO Molecular Function (6): zinc ion binding (GO:0008270), Hsp70 protein binding (GO:0030544), transmembrane transporter binding (GO:0044325), protein-folding chaperone binding (GO:0051087), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (2): perinuclear region of cytoplasm (GO:0048471), cytoplasm (GO:0005737)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| protein binding | 2 |
| cellular anatomical structure | 2 |
| gene expression | 1 |
| regulation of gene expression | 1 |
| positive regulation of macromolecule biosynthetic process | 1 |
| regulation of striated muscle contraction | 1 |
| regulation of heart contraction | 1 |
| cardiac muscle contraction | 1 |
| heart looping | 1 |
| regulation of morphogenesis of an epithelium | 1 |
| membrane repolarization during ventricular cardiac muscle cell action potential | 1 |
| regulation of membrane repolarization during ventricular cardiac muscle cell action potential | 1 |
| positive regulation of membrane repolarization during cardiac muscle cell action potential | 1 |
| positive regulation of biological process | 1 |
| membrane repolarization during cardiac muscle cell action potential | 1 |
| regulation of membrane repolarization during cardiac muscle cell action potential | 1 |
| transition metal ion binding | 1 |
| heat shock protein binding | 1 |
| protein-folding chaperone binding | 1 |
| binding | 1 |
| cation binding | 1 |
| cytoplasm | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
588 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RNF207 | RFFL | Q8WZ73 | 609 |
| RNF207 | NOS1AP | O75052 | 604 |
| RNF207 | GINS3 | Q9BRX5 | 593 |
| RNF207 | LITAF | Q99732 | 571 |
| RNF207 | KCNH2 | Q12809 | 525 |
| RNF207 | NDRG4 | Q9ULP0 | 507 |
| RNF207 | SLC35F1 | Q5T1Q4 | 500 |
| RNF207 | FSD2 | A1L4K1 | 489 |
| RNF207 | NOL9 | Q5SY16 | 467 |
| RNF207 | GPR153 | Q6NV75 | 447 |
| RNF207 | TRIM40 | Q6P9F5 | 444 |
| RNF207 | CAMSAP3 | Q9P1Y5 | 440 |
| RNF207 | THOC7 | Q6I9Y2 | 437 |
| RNF207 | KCNJ2 | P48049 | 436 |
| RNF207 | ATP1B1 | P05026 | 435 |
IntAct
0 interactions, top by confidence:
BioGRID (386): KCNH2 (Affinity Capture-Western), RNF207 (Affinity Capture-Western), RNF207 (Affinity Capture-Western), RNF207 (Affinity Capture-Western), RNF207 (Biochemical Activity), UBE2D1 (Reconstituted Complex), RNF207 (Affinity Capture-Western), KCNH2 (Affinity Capture-Western), Myh6 (Affinity Capture-MS), LOC100911597 (Affinity Capture-MS), Sptan1 (Affinity Capture-MS), Myh10 (Affinity Capture-MS), Myh7 (Affinity Capture-MS), Tpm1 (Affinity Capture-MS), Des (Affinity Capture-MS)
ESM2 similar proteins: A0JNG4, A1L3T7, B1AVH7, B5DFA1, D2H0G5, E1U8D0, E9QHE3, I1VZH0, O08629, O60826, O75052, O94964, P58660, P86182, P98171, Q13263, Q149G0, Q1LWB0, Q1RMI8, Q3ULW6, Q3V3A7, Q571B6, Q58D79, Q5JV73, Q5R8S0, Q62318, Q6P4K6, Q6PGG2, Q6ZQ29, Q6ZRF8, Q768S4, Q7TSI1, Q80TQ5, Q8BL43, Q8C7B8, Q8IWE5, Q8K1S6, Q8N163, Q8TF30, Q8VDP4
Diamond homologs: A0JNG4, E9QHE3, I1VZH0, Q11096, Q1XH17, Q3V3A7, Q6ZRF8, Q865W2, Q86XT4
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| Ub:E2 | “up-regulates activity” | RNF207 | ubiquitination |
Disease & clinical
Clinical variants and AI predictions
ClinVar
149 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 1 |
| Uncertain significance | 113 |
| Likely benign | 9 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 804431 | NM_207396.3(RNF207):c.1109+1G>A | Likely pathogenic |
SpliceAI
3218 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:6206299:GCGG:G | donor_gain | 1.0000 |
| 1:6206301:GG:G | donor_gain | 1.0000 |
| 1:6206302:GG:G | donor_gain | 1.0000 |
| 1:6206303:G:A | donor_loss | 1.0000 |
| 1:6206303:G:GG | donor_gain | 1.0000 |
| 1:6206304:T:A | donor_loss | 1.0000 |
| 1:6206723:GCCA:G | donor_gain | 1.0000 |
| 1:6206727:G:GG | donor_gain | 1.0000 |
| 1:6208880:GGAC:G | acceptor_gain | 1.0000 |
| 1:6209018:G:GT | donor_gain | 1.0000 |
| 1:6209021:GTGCA:G | donor_gain | 1.0000 |
| 1:6209022:TGCA:T | donor_gain | 1.0000 |
| 1:6209023:GCA:G | donor_gain | 1.0000 |
| 1:6209023:GCAG:G | donor_gain | 1.0000 |
| 1:6209026:G:GG | donor_gain | 1.0000 |
| 1:6209030:G:GG | donor_gain | 1.0000 |
| 1:6209113:A:AG | acceptor_gain | 1.0000 |
| 1:6209114:G:GA | acceptor_gain | 1.0000 |
| 1:6209114:GC:G | acceptor_gain | 1.0000 |
| 1:6209114:GCGC:G | acceptor_gain | 1.0000 |
| 1:6209114:GCGCT:G | acceptor_gain | 1.0000 |
| 1:6209194:G:GT | donor_gain | 1.0000 |
| 1:6209194:GAA:G | donor_gain | 1.0000 |
| 1:6209197:G:GG | donor_gain | 1.0000 |
| 1:6209409:CCCAG:C | acceptor_loss | 1.0000 |
| 1:6209411:CAG:C | acceptor_loss | 1.0000 |
| 1:6209412:A:T | acceptor_loss | 1.0000 |
| 1:6209413:GGCC:G | acceptor_gain | 1.0000 |
| 1:6209536:GCAG:G | donor_gain | 1.0000 |
| 1:6209537:C:T | donor_gain | 1.0000 |
AlphaMissense
4132 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:6208965:T:C | F137L | 0.996 |
| 1:6208967:C:A | F137L | 0.996 |
| 1:6208967:C:G | F137L | 0.996 |
| 1:6208966:T:G | F137C | 0.991 |
| 1:6208935:T:A | C127S | 0.987 |
| 1:6208936:G:C | C127S | 0.987 |
| 1:6208966:T:C | F137S | 0.987 |
| 1:6213111:T:C | L527P | 0.987 |
| 1:6208903:G:A | C116Y | 0.986 |
| 1:6211046:T:C | F346S | 0.986 |
| 1:6208902:T:A | C116S | 0.985 |
| 1:6208903:G:C | C116S | 0.985 |
| 1:6213081:T:C | L517P | 0.985 |
| 1:6213144:T:A | V538D | 0.985 |
| 1:6208902:T:C | C116R | 0.983 |
| 1:6208912:G:A | C119Y | 0.983 |
| 1:6209141:T:C | F166L | 0.983 |
| 1:6209143:C:A | F166L | 0.983 |
| 1:6209143:C:G | F166L | 0.983 |
| 1:6210421:T:C | F309L | 0.983 |
| 1:6210423:C:A | F309L | 0.983 |
| 1:6210423:C:G | F309L | 0.983 |
| 1:6206608:T:C | C25R | 0.982 |
| 1:6208899:T:C | F115L | 0.982 |
| 1:6208901:C:A | F115L | 0.982 |
| 1:6208901:C:G | F115L | 0.982 |
| 1:6208903:G:T | C116F | 0.981 |
| 1:6208950:C:G | H132D | 0.981 |
| 1:6208965:T:A | F137I | 0.981 |
| 1:6211046:T:G | F346C | 0.981 |
dbSNP variants (sampled 300 via entrez): RS1000100757 (1:6206244 G>T), RS1000165198 (1:6214404 T>A,G), RS1000499898 (1:6207509 C>G), RS1000556011 (1:6206459 G>A), RS1000570535 (1:6208874 C>G,T), RS1000733566 (1:6207892 G>A), RS1001019132 (1:6217581 A>T), RS1001273334 (1:6215358 G>A), RS1001471354 (1:6217958 T>G), RS1001500535 (1:6213288 A>C), RS1001525195 (1:6204569 T>G), RS1001744434 (1:6218835 G>A), RS1002049439 (1:6220539 C>T), RS1002106916 (1:6208710 G>A), RS1002298098 (1:6204772 T>G)
Disease associations
OMIM: gene MIM:616923 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| long QT syndrome | Limited | Autosomal dominant |
Mondo (1): long QT syndrome (MONDO:0002442)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
61 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000363_5 | QT interval | 1.000000e-16 |
| GCST000364_11 | QT interval | 4.000000e-16 |
| GCST002500_46 | QT interval | 7.000000e-09 |
| GCST002500_47 | QT interval | 7.000000e-40 |
| GCST003818_24 | Resting heart rate | 2.000000e-11 |
| GCST004279_26 | Systolic blood pressure | 3.000000e-10 |
| GCST005171_18 | QT interval | 1.000000e-12 |
| GCST006022_5 | Pulse pressure | 2.000000e-09 |
| GCST007218_3 | QT interval | 5.000000e-12 |
| GCST009016_1 | T wave morphology restitution during exercise | 2.000000e-11 |
| GCST009068_1 | T wave morphology restitution during exercise (MTAG) | 9.000000e-11 |
| GCST010346_27 | TPE interval (resting) | 6.000000e-28 |
| GCST010796_1076 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-24 |
| GCST010796_1077 | Electrocardiogram morphology (amplitude at temporal datapoints) | 5.000000e-25 |
| GCST010796_1078 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-25 |
| GCST010796_1079 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-25 |
| GCST010796_1080 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-26 |
| GCST010796_1081 | Electrocardiogram morphology (amplitude at temporal datapoints) | 5.000000e-27 |
| GCST010796_1082 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-26 |
| GCST010796_1083 | Electrocardiogram morphology (amplitude at temporal datapoints) | 3.000000e-26 |
| GCST010796_1084 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-25 |
| GCST010796_1085 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-24 |
| GCST010796_1086 | Electrocardiogram morphology (amplitude at temporal datapoints) | 8.000000e-25 |
| GCST010796_1088 | Electrocardiogram morphology (amplitude at temporal datapoints) | 5.000000e-25 |
| GCST010796_1089 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-23 |
| GCST010796_1090 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-22 |
| GCST010796_1091 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-21 |
| GCST010796_1092 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-20 |
| GCST010796_1093 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-19 |
| GCST010796_1094 | Electrocardiogram morphology (amplitude at temporal datapoints) | 4.000000e-18 |
EFO canonical traits (6, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004682 | QT interval |
| EFO:0006335 | systolic blood pressure |
| EFO:0005763 | pulse pressure measurement |
| EFO:0008398 | T wave morphology measurement |
| EFO:0004644 | TPE interval measurement |
| EFO:0004327 | electrocardiography |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008133 | Long QT Syndrome | C14.280.067.565; C14.280.123.625; C16.131.240.400.715; C23.550.073.547 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
38 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Doxorubicin | decreases expression | 2 |
| Tobacco Smoke Pollution | decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| dicrotophos | increases expression | 1 |
| bisphenol A | decreases expression | 1 |
| 2,4,5,2’,4’,5’-hexachlorobiphenyl | decreases expression | 1 |
| beta-lapachone | decreases expression | 1 |
| sodium arsenite | affects cotreatment, decreases expression, increases abundance | 1 |
| butyraldehyde | decreases expression | 1 |
| 3,4,5,3’,4’-pentachlorobiphenyl | decreases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| manganese chloride | decreases expression, increases abundance, affects cotreatment | 1 |
| ferrous chloride | decreases expression | 1 |
| pentanal | decreases expression | 1 |
| abrine | increases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Fulvestrant | increases methylation | 1 |
| Arsenic | increases abundance, affects cotreatment, decreases expression | 1 |
| Atrazine | decreases expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Cisplatin | affects cotreatment, increases expression | 1 |
| Copper | affects binding, increases expression | 1 |
| Diazinon | increases methylation | 1 |
| Disulfiram | affects binding, increases expression | 1 |
| Manganese | increases abundance, affects cotreatment, decreases expression | 1 |
| Smoke | decreases expression | 1 |
| Thiram | decreases expression | 1 |
| Tretinoin | increases expression | 1 |
Clinical trials (associated diseases)
66 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT02513940 | PHASE4 | COMPLETED | Influence of Testosterone Administration on Drug-Induced QT Interval Prolongation and Torsades de Pointes |
| NCT03834883 | PHASE4 | COMPLETED | Reducing the Risk of Drug-Induced QT Interval Lengthening in Women |
| NCT04169100 | PHASE4 | UNKNOWN | Novel Form of Acquired Long QT Syndrome |
| NCT04675788 | PHASE4 | COMPLETED | Novel Approaches for Minimizing Drug-Induced QT Interval Lengthening |
| NCT01648205 | PHASE2 | COMPLETED | Long-term Efficacy Study of Sodium Channel Blocker in LQT3 Patients |
| NCT02412709 | PHASE2 | UNKNOWN | Long QT Syndrome Screening in Newborns |
| NCT04581408 | PHASE2 | COMPLETED | Mutation-specific Therapy for the Long QT Syndrome |
| NCT00316459 | PHASE1 | COMPLETED | Study Evaluating the Effects of Multiple Oral Doses of ERB-041 on Cardiac Repolarization in Healthy Subjects |
| NCT01849003 | PHASE1 | COMPLETED | Study of the Effect of GS-6615 in Subjects With LQT-3 |
| NCT02365532 | PHASE1 | COMPLETED | Effect of Oral GS-6615 on Dofetilide-Induced QT Prolongation, Safety, and Tolerability in Healthy Adults |
| NCT02412098 | PHASE1 | COMPLETED | Pharmacokinetics of Eleclazine in Adults With Normal and Impaired Hepatic Function |
| NCT02441829 | PHASE1 | COMPLETED | Pharmacokinetics of Eleclazine in Adults With Normal and Impaired Renal Function |
| NCT05759962 | PHASE1 | COMPLETED | Phase 1 Study of LQT-1213 in Healthy Adults |
| NCT05906732 | PHASE1/PHASE2 | TERMINATED | Study of LQT-1213 on QTc-induced Prolongation in Healthy Adult Subjects (Part1) and on Congenital Long QT in Patients Diagnosed With Type 2 or 3 Long QT Syndrome (Part 2). |
| NCT00005176 | Not specified | COMPLETED | Long QT Syndrome-Population Genetics and Cardiac Studies |
| NCT00005250 | Not specified | COMPLETED | Linkage Study of Long QT Syndrome In An Amish Kindred |
| NCT00005367 | Not specified | COMPLETED | Epidemiology of Long QTand Asian Sudden Death in Sleep |
| NCT00221832 | Not specified | UNKNOWN | Molecular Genetic Screening and Identification of Congenital Arrhythmogenic Diseases |
| NCT00292032 | Not specified | COMPLETED | Registry of Unexplained Cardiac Arrest |
| NCT00335036 | Not specified | TERMINATED | Pediatric Lead Extractability and Survival Evaluation (PLEASE) |
| NCT00399412 | Not specified | COMPLETED | ECG Signal Collection From Long QT Syndrome, Wide QRS Complexes, Heart Failure, and Cardiac Resynchronization Patients |
| NCT00488254 | Not specified | COMPLETED | The Long QT Syndrome in Pregnancy |
| NCT00588965 | Not specified | COMPLETED | Effect of Beta-blocker Therapy on QTc Response in Exercise and Recovery in Normal Subjects |
| NCT01705925 | Not specified | COMPLETED | Multicenter Evaluation of Children and Young Adults With Genotype Positive Long QT Syndrome |
| NCT01903564 | Not specified | COMPLETED | Fetal and Neonatal Magnetophysiology |
| NCT02082431 | Not specified | COMPLETED | Determine the Incidence of Long QT Amongst a Large Cohort of Subjects Diagnosed With Unilateral or Bilateral Sensorineural Hearing Loss. |
| NCT02413450 | Not specified | ENROLLING_BY_INVITATION | Derivation of Human Induced Pluripotent Stem (iPS) Cells to Heritable Cardiac Arrhythmias |
| NCT02425189 | Not specified | COMPLETED | The Canadian National Long QT Syndrome Registry |
| NCT02439645 | Not specified | TERMINATED | A Registry to Determine the Clinical and Genetic Risk Factors for Torsade De Pointes |
| NCT02439658 | Not specified | UNKNOWN | Genetics of QT Prolongation With Antiarrhythmics |
| NCT02549664 | Not specified | COMPLETED | Exercise in Genetic Cardiovascular Conditions |
| NCT02581241 | Not specified | COMPLETED | Abnormal QT-Response to the Sudden Tachycardia Provoked by Standing in Individuals With Drug-induced Long QT Syndrome |
| NCT02680080 | Not specified | COMPLETED | Effect of Grapefruit on QT Interval in Healthy Volunteers and Patients With Congenital Long QT Syndrome |
| NCT02775513 | Not specified | UNKNOWN | Metabolism of Patients With Genetically Caused Cardiac Arrhythmia |
| NCT02814981 | Not specified | UNKNOWN | Hydroxyzine and Risk of Prolongation of QT Interval |
| NCT02876380 | Not specified | COMPLETED | Prospective Identification of Long QT Syndrome in Fetal Life |
| NCT03182777 | Not specified | COMPLETED | Safety of Local Dental Anesthesia in Patients With Cardiac Channelopathies |
| NCT03544918 | Not specified | COMPLETED | Prevalence of Congenital Long QT Syndrome and Acquired QT Prolongation in a Hospital Cohort |
| NCT03642405 | Not specified | UNKNOWN | Drug-induced Repolarization ECG Changes |
| NCT03678311 | Not specified | COMPLETED | Long QT Syndrome and Sleep Apnea |
Related Atlas pages
- Associated diseases: long QT syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): long QT syndrome