RNF212
geneOn this page
Also known as FLJ38841
Summary
RNF212 (ring finger protein 212, HGNC:27729) is a protein-coding gene on chromosome 4p16.3, encoding Probable E3 SUMO-protein ligase RNF212 (Q495C1). SUMO E3 ligase that acts as a regulator of crossing-over during meiosis: required to couple chromosome synapsis to the formation of crossover-specific recombination complexes.
This gene encodes a RING finger protein that may function as a ubiquitin ligase. The encoded protein may be involved in meiotic recombination. This gene is located within a linkage disequilibrium block and polymorphisms in this gene may influence recombination rates. Alternate splicing results in multiple transcript variants.
Source: NCBI Gene 285498 — RefSeq curated summary.
At a glance
- Gene–disease (curated): spermatogenic failure 62 (Limited, GenCC)
- GWAS associations: 3
- Clinical variants (ClinVar): 80 total — 1 pathogenic
- Phenotypes (HPO): 10
- MANE Select transcript:
NM_001131034
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:27729 |
| Approved symbol | RNF212 |
| Name | ring finger protein 212 |
| Location | 4p16.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ38841 |
| Ensembl gene | ENSG00000178222 |
| Ensembl biotype | protein_coding |
| OMIM | 612041 |
| Entrez | 285498 |
Gene structure
Transcript identifiers
Ensembl transcripts: 16 — 6 retained_intron, 4 protein_coding, 4 nonsense_mediated_decay, 2 protein_coding_CDS_not_defined
ENST00000333673, ENST00000382968, ENST00000433731, ENST00000454487, ENST00000503206, ENST00000505693, ENST00000505730, ENST00000506730, ENST00000508428, ENST00000508633, ENST00000510715, ENST00000511620, ENST00000512552, ENST00000514024, ENST00000514757, ENST00000698262
RefSeq mRNA: 5 — MANE Select: NM_001131034
NM_001131034, NM_001193318, NM_001366918, NM_001366919, NM_194439
CCDS: CCDS3345, CCDS46996, CCDS54704, CCDS93460
Canonical transcript exons
ENST00000433731 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00003498298 | 1085896 | 1085954 |
| ENSE00003512285 | 1073599 | 1073662 |
| ENSE00003523446 | 1071478 | 1073193 |
| ENSE00003624621 | 1081567 | 1081619 |
| ENSE00003627968 | 1079643 | 1079688 |
| ENSE00003673413 | 1081419 | 1081467 |
| ENSE00003673761 | 1090782 | 1090838 |
| ENSE00003683071 | 1108343 | 1108404 |
| ENSE00003691287 | 1096765 | 1096839 |
| ENSE00003847245 | 1113356 | 1113564 |
Expression profiles
Bgee: expression breadth ubiquitous, 164 present calls, max score 94.25.
FANTOM5 (CAGE): breadth broad, TPM avg 1.5898 / max 117.1939, expressed in 506 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 51037 | 1.5898 | 506 |
Top tissues by expression
239 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| body of pancreas | UBERON:0001150 | 94.25 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 91.78 | gold quality |
| left ovary | UBERON:0002119 | 91.66 | gold quality |
| cerebellar cortex | UBERON:0002129 | 91.66 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 91.32 | gold quality |
| adenohypophysis | UBERON:0002196 | 90.80 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 90.69 | gold quality |
| pituitary gland | UBERON:0000007 | 90.21 | gold quality |
| cerebellum | UBERON:0002037 | 89.90 | gold quality |
| oocyte | CL:0000023 | 88.92 | gold quality |
| left testis | UBERON:0004533 | 88.20 | gold quality |
| right testis | UBERON:0004534 | 88.11 | gold quality |
| right ovary | UBERON:0002118 | 87.98 | gold quality |
| nucleus accumbens | UBERON:0001882 | 87.95 | gold quality |
| putamen | UBERON:0001874 | 87.31 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 86.52 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 86.37 | gold quality |
| pancreas | UBERON:0001264 | 86.36 | gold quality |
| metanephros cortex | UBERON:0010533 | 86.31 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 86.04 | gold quality |
| caudate nucleus | UBERON:0001873 | 85.96 | gold quality |
| testis | UBERON:0000473 | 85.88 | gold quality |
| thyroid gland | UBERON:0002046 | 85.67 | gold quality |
| ovary | UBERON:0000992 | 85.57 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 84.89 | gold quality |
| stromal cell of endometrium | CL:0002255 | 84.68 | gold quality |
| mucosa of stomach | UBERON:0001199 | 84.05 | gold quality |
| secondary oocyte | CL:0000655 | 83.98 | gold quality |
| left uterine tube | UBERON:0001303 | 83.38 | gold quality |
| spinal cord | UBERON:0002240 | 82.99 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 7.27 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
75 targeting RNF212, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-6870-5P | 99.99 | 68.55 | 2115 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-3617-3P | 99.98 | 67.86 | 918 |
| HSA-MIR-4723-5P | 99.97 | 68.70 | 2034 |
| HSA-MIR-5698 | 99.97 | 68.49 | 2029 |
| HSA-MIR-7111-5P | 99.97 | 68.48 | 2062 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-3605-5P | 99.96 | 67.12 | 932 |
| HSA-MIR-1468-3P | 99.96 | 72.74 | 3797 |
| HSA-MIR-545-3P | 99.95 | 70.74 | 2783 |
| HSA-MIR-4760-3P | 99.93 | 70.50 | 2385 |
| HSA-MIR-338-5P | 99.92 | 72.34 | 2951 |
| HSA-MIR-1297 | 99.91 | 73.41 | 3162 |
| HSA-MIR-652-5P | 99.91 | 67.49 | 505 |
| HSA-MIR-10527-5P | 99.91 | 72.28 | 3754 |
| HSA-MIR-182-5P | 99.87 | 74.03 | 2589 |
| HSA-MIR-548D-3P | 99.87 | 70.67 | 4362 |
| HSA-MIR-548BB-3P | 99.86 | 70.58 | 4354 |
| HSA-MIR-5582-3P | 99.86 | 72.48 | 4221 |
| HSA-MIR-548AR-3P | 99.85 | 71.26 | 3889 |
| HSA-MIR-6079 | 99.84 | 68.54 | 1170 |
| HSA-MIR-4698 | 99.84 | 71.41 | 4303 |
| HSA-MIR-6715A-3P | 99.83 | 68.05 | 1473 |
| HSA-MIR-1323 | 99.83 | 69.89 | 2471 |
| HSA-MIR-548AZ-3P | 99.82 | 70.56 | 3549 |
| HSA-MIR-548BC | 99.82 | 70.61 | 3524 |
| HSA-MIR-548E-3P | 99.82 | 70.59 | 3514 |
Literature-anchored findings (GeneRIF, showing 4)
- This paper describes a partial transcript of the human RNF212 gene. (PMID:15340062)
- genome search identified sequence variants in the 4p16.3 region correlated with recombination rate in males & females; variants are located in the RNF212 gene, a putative ortholog of ZHP-3 gene essential for recombination & chiasma formation in C elegans (PMID:18239089)
- The polymorphism of SNP rs4045481 in RNF212 gene might be associated with azoospermia and genotype CC of this SNP may be a risk factor of azoospermia. (PMID:29277047)
- For the first time, study reports biallelic variants in STAG3, in one sporadic patient, and a homozygous RNF212 variant, in the two brothers, as the genetic cause of non-obstructive azoospermia. Meiotic studies allowed the detection of the functional consequences of the mutations and provided information on the role of STAG3 and RNF212 in human male meiosis. (PMID:31125047)
Cross-species orthologs
9 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | rnf212 | ENSDARG00000090319 |
| mus_musculus | Rnf212 | ENSMUSG00000055385 |
| rattus_norvegicus | Rnf212 | ENSRNOG00000059010 |
| drosophila_melanogaster | narya | FBGN0031018 |
| drosophila_melanogaster | nenya | FBGN0051053 |
| caenorhabditis_elegans | zhp-3 | WBGENE00006976 |
| caenorhabditis_elegans | zhp-2 | WBGENE00008387 |
| caenorhabditis_elegans | WBGENE00012678 | |
| caenorhabditis_elegans | zhp-1 | WBGENE00018867 |
Paralogs (1): RNF212B (ENSG00000215277)
Protein
Protein identifiers
Probable E3 SUMO-protein ligase RNF212 — Q495C1 (reviewed: Q495C1)
Alternative names: Probable E3 SUMO-protein transferase RNF212, RING finger protein 212
All UniProt accessions (4): Q495C1, A0A8V8TN20, D6R9L2, D6RA97
UniProt curated annotations — full annotation on UniProt →
Function. SUMO E3 ligase that acts as a regulator of crossing-over during meiosis: required to couple chromosome synapsis to the formation of crossover-specific recombination complexes. Localizes to recombination sites and stabilizes meiosis-specific recombination factors, such as MutS-gamma complex proteins (MSH4 and MSH5) and TEX11. May mediate sumoylation of target proteins MSH4 and/or MSH5, leading to enhance their binding to recombination sites. Acts as a limiting factor for crossover designation and/or reinforcement and plays an antagonist role with CCNB1IP1/HEI10 in the regulation of meiotic recombination.
Subcellular location. Nucleus. Chromosome.
Disease relevance. Spermatogenic failure 62 (SPGF62) [MIM:619673] An autosomal recessive male infertility disorder characterized by non-obstructive azoospermia, due to complete metaphase arrest at the spermatocyte stage. The disease is caused by variants affecting the gene represented in this entry.
Pathway. Protein modification; protein sumoylation.
Polymorphism. Genetic variations in RNF212 influence recombination rate, designated recombination rate quantitative trait locus 1 (RRQTL1) [MIM:612042].
Isoforms (6)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q495C1-1 | 1 | yes |
| Q495C1-2 | 2 | |
| Q495C1-3 | 3 | |
| Q495C1-4 | 4 | |
| Q495C1-5 | 5 | |
| Q495C1-6 | 6 |
RefSeq proteins (5): NP_001124506, NP_001180247, NP_001353847, NP_001353848, NP_919420 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001841 | Znf_RING | Domain |
| IPR017907 | Znf_RING_CS | Conserved_site |
| IPR042123 | Zip3/RNF212-like | Family |
Pfam: PF14634
UniProt features (16 total): splice variant 7, sequence conflict 5, chain 1, zinc finger region 1, sequence variant 1, coiled-coil region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q495C1-F1 | 63.72 | 0.37 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 92 (showing top):
GOBP_MEIOTIC_CHROMOSOME_SEGREGATION, GOBP_CHROMOSOME_ORGANIZATION, GOBP_PEPTIDYL_LYSINE_MODIFICATION, GOBP_ORGANELLE_FISSION, GOBP_PROTEIN_SUMOYLATION, chr4p16, GOBP_POST_TRANSLATIONAL_PROTEIN_MODIFICATION, GOBP_CHROMOSOME_ORGANIZATION_INVOLVED_IN_MEIOTIC_CELL_CYCLE, GOBP_HOMOLOGOUS_CHROMOSOME_SEGREGATION, GOBP_MEIOTIC_CELL_CYCLE_PROCESS, GOBP_HOMOLOGOUS_CHROMOSOME_PAIRING_AT_MEIOSIS, GOBP_NUCLEAR_CHROMOSOME_SEGREGATION, GOBP_MEIOTIC_CELL_CYCLE, GOBP_CELL_CYCLE_PROCESS, GOBP_DNA_METABOLIC_PROCESS
GO Biological Process (6): meiotic gene conversion (GO:0006311), homologous chromosome pairing at meiosis (GO:0007129), reciprocal meiotic recombination (GO:0007131), protein sumoylation (GO:0016925), chiasma assembly (GO:0051026), meiotic cell cycle (GO:0051321)
GO Molecular Function (4): zinc ion binding (GO:0008270), SUMO transferase activity (GO:0019789), transferase activity (GO:0016740), metal ion binding (GO:0046872)
GO Cellular Component (3): synaptonemal complex (GO:0000795), nucleus (GO:0005634), chromosome (GO:0005694)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| meiotic cell cycle process | 2 |
| gene conversion | 1 |
| meiosis I cell cycle process | 1 |
| homologous chromosome segregation | 1 |
| chromosome organization involved in meiotic cell cycle | 1 |
| meiosis I | 1 |
| reciprocal homologous recombination | 1 |
| peptidyl-lysine modification | 1 |
| protein modification by small protein conjugation | 1 |
| homologous chromosome pairing at meiosis | 1 |
| reciprocal meiotic recombination | 1 |
| cellular component assembly | 1 |
| cell cycle | 1 |
| sexual reproduction | 1 |
| reproductive process | 1 |
| meiotic nuclear division | 1 |
| transition metal ion binding | 1 |
| ubiquitin-like protein transferase activity | 1 |
| catalytic activity | 1 |
| cation binding | 1 |
| synaptonemal structure | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular membraneless organelle | 1 |
Protein interactions and networks
STRING
496 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RNF212 | CCNB1IP1 | Q9NPC3 | 905 |
| RNF212 | CNTD1 | Q8N815 | 833 |
| RNF212 | MSH4 | O15457 | 816 |
| RNF212 | SPO11 | Q9Y5K1 | 813 |
| RNF212 | RAD51 | Q06609 | 801 |
| RNF212 | TEX11 | Q8IYF3 | 774 |
| RNF212 | MSH5 | O43196 | 754 |
| RNF212 | REC8 | O95072 | 725 |
| RNF212 | PRDM9 | Q9NQV7 | 720 |
| RNF212 | SHOC1 | Q5VXU9 | 713 |
| RNF212 | HFM1 | A2PYH4 | 670 |
| RNF212 | HORMAD1 | Q86X24 | 641 |
| RNF212 | C1orf146 | Q5VVC0 | 608 |
| RNF212 | CPLX1 | O14810 | 607 |
| RNF212 | SYCP1 | Q15431 | 601 |
IntAct
3 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| RNF212 | RPSA2 | psi-mi:“MI:0914”(association) | 0.350 |
| rpoB | RNF212 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (5): SRC (Affinity Capture-MS), SATB2 (Affinity Capture-MS), RPSAP58 (Affinity Capture-MS), RNF212 (Affinity Capture-MS), RNF212 (Affinity Capture-RNA)
ESM2 similar proteins: A0A5K7RLP0, A1YEX3, A2AGX3, A2AKB4, A7YWH3, A8MVX0, C9JSJ3, O08715, O88286, O88884, P24278, P97303, P97432, Q17RG1, Q1XFL1, Q3KNY0, Q3USH1, Q495C1, Q4V7B1, Q501R9, Q562E2, Q5SYB0, Q5VT97, Q5XIN1, Q6P2K3, Q6PCP7, Q6ZSG2, Q7TSX9, Q80SU3, Q80TL0, Q80W88, Q80XI1, Q8BLK9, Q8BSV3, Q8BW86, Q8K3E9, Q8K451, Q8N7W2, Q8NE31, Q8NFN8
Diamond homologs: A8MTL3, C6KRL6, D3Z423, Q495C1, Q5RBV9, F6TQD1, Q8MYP1
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| Ub:E2 | “up-regulates activity” | RNF212 | ubiquitination |
Disease & clinical
Clinical variants and AI predictions
ClinVar
80 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 43 |
| Likely benign | 12 |
| Benign | 7 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1050640 | NM_001131034.4(RNF212):c.111dup (p.Lys38Ter) | Pathogenic |
SpliceAI
2151 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 4:1073663:C:CC | acceptor_gain | 1.0000 |
| 4:1113354:A:AT | donor_loss | 1.0000 |
| 4:1113355:C:CG | donor_loss | 1.0000 |
| 4:1073157:C:CT | acceptor_gain | 0.9900 |
| 4:1073659:CAGA:C | acceptor_gain | 0.9900 |
| 4:1081620:C:CC | acceptor_gain | 0.9900 |
| 4:1108341:A:AC | donor_gain | 0.9900 |
| 4:1108342:C:CC | donor_gain | 0.9900 |
| 4:1108342:CATG:C | donor_gain | 0.9900 |
| 4:1113324:C:A | donor_gain | 0.9900 |
| 4:1113386:G:A | donor_gain | 0.9900 |
| 4:1073660:AGA:A | acceptor_gain | 0.9800 |
| 4:1073661:GA:G | acceptor_gain | 0.9800 |
| 4:1073669:A:C | acceptor_gain | 0.9800 |
| 4:1081616:CATA:C | acceptor_gain | 0.9800 |
| 4:1103802:TG:T | donor_gain | 0.9800 |
| 4:1113416:T:TA | donor_gain | 0.9800 |
| 4:1073658:TCAGA:T | acceptor_gain | 0.9700 |
| 4:1073659:CAGAC:C | acceptor_gain | 0.9700 |
| 4:1073660:AGAC:A | acceptor_loss | 0.9700 |
| 4:1073661:GAC:G | acceptor_loss | 0.9700 |
| 4:1073662:AC:A | acceptor_loss | 0.9700 |
| 4:1073669:A:AC | acceptor_gain | 0.9700 |
| 4:1085786:C:A | donor_gain | 0.9700 |
| 4:1085956:T:A | acceptor_gain | 0.9700 |
| 4:1096840:C:CC | acceptor_gain | 0.9700 |
| 4:1113319:C:A | donor_gain | 0.9700 |
| 4:1113360:G:A | donor_gain | 0.9700 |
| 4:1073158:A:C | acceptor_gain | 0.9600 |
| 4:1085955:C:A | acceptor_gain | 0.9600 |
AlphaMissense
1940 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 4:1090827:A:C | F86L | 0.996 |
| 4:1090827:A:T | F86L | 0.996 |
| 4:1090829:A:G | F86L | 0.996 |
| 4:1090828:A:G | F86S | 0.987 |
| 4:1113446:A:G | C7R | 0.986 |
| 4:1108390:A:G | C42R | 0.985 |
| 4:1113445:C:T | C7Y | 0.985 |
| 4:1113384:G:C | H27Q | 0.984 |
| 4:1113384:G:T | H27Q | 0.984 |
| 4:1113447:G:C | F6L | 0.984 |
| 4:1113447:G:T | F6L | 0.984 |
| 4:1113449:A:G | F6L | 0.984 |
| 4:1113397:G:A | T23I | 0.982 |
| 4:1108389:C:G | C42S | 0.981 |
| 4:1108390:A:T | C42S | 0.981 |
| 4:1113445:C:G | C7S | 0.981 |
| 4:1113446:A:T | C7S | 0.981 |
| 4:1090828:A:C | F86C | 0.980 |
| 4:1113444:A:C | C7W | 0.980 |
| 4:1096813:G:C | F66L | 0.979 |
| 4:1096813:G:T | F66L | 0.979 |
| 4:1096815:A:G | F66L | 0.979 |
| 4:1113376:C:T | C30Y | 0.979 |
| 4:1113441:A:C | N8K | 0.979 |
| 4:1113441:A:T | N8K | 0.979 |
| 4:1113377:A:G | C30R | 0.978 |
| 4:1113437:A:G | C10R | 0.978 |
| 4:1113392:A:G | C25R | 0.977 |
| 4:1113405:G:C | F20L | 0.977 |
| 4:1113405:G:T | F20L | 0.977 |
dbSNP variants (sampled 300 via entrez): RS1000027076 (4:1073307 C>A,G), RS1000066136 (4:1086986 A>G,T), RS1000115845 (4:1055853 C>G,T), RS1000195178 (4:1082741 C>G,T), RS1000215562 (4:1115555 A>G), RS1000258526 (4:1115395 A>T), RS10003009 (4:1057061 G>A,C), RS1000372956 (4:1082611 C>A), RS1000504632 (4:1093685 C>G,T), RS1000540139 (4:1058244 G>A,T), RS1000549544 (4:1109645 G>A), RS1000609357 (4:1108801 C>G), RS1000620537 (4:1093912 T>A,C), RS1000662437 (4:1078417 G>A), RS1000689070 (4:1062980 T>A,G)
Disease associations
OMIM: gene MIM:612041 | disease phenotypes: MIM:619673, MIM:190685
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| spermatogenic failure 62 | Limited | Autosomal recessive |
Mondo (3): spermatogenic failure 62 (MONDO:0030508), breast ductal adenocarcinoma (MONDO:0005590), Down syndrome (MONDO:0008608)
Orphanet (1): Down syndrome (Orphanet:870)
HPO phenotypes
10 total (10 of 10 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000027 | Azoospermia |
| HP:0000118 | Phenotypic abnormality |
| HP:0000837 | Increased circulating gonadotropin level |
| HP:0003251 | Male infertility |
| HP:0008669 | Abnormal spermatogenesis |
| HP:0008734 | Decreased testicular size |
| HP:0011961 | Non-obstructive azoospermia |
| HP:0011962 | Obstructive azoospermia |
| HP:0031039 | Spermatocyte maturation arrest |
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000148_1 | Recombination rate (males) | 3.000000e-24 |
| GCST000149_1 | Recombination rate (females) | 2.000000e-12 |
| GCST006979_321 | Heel bone mineral density | 2.000000e-24 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004863 | recombination rate |
| EFO:0009270 | heel bone mineral density |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D018270 | Carcinoma, Ductal, Breast | C04.557.470.200.025.232.500; C04.557.470.615.132.500; C04.588.180.390; C17.800.090.500.390 |
| D004314 | Down Syndrome | C10.597.606.360.220; C16.131.077.327; C16.131.260.260; C16.320.180.260 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
18 total (human), top 18 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | increases methylation, affects expression | 2 |
| bufotalin | decreases expression | 1 |
| propionaldehyde | increases expression | 1 |
| bisphenol A | decreases methylation | 1 |
| butyraldehyde | increases expression | 1 |
| zinc chromate | decreases expression, increases abundance | 1 |
| pentanal | increases expression | 1 |
| chromium hexavalent ion | decreases expression, increases abundance | 1 |
| entinostat | increases expression | 1 |
| Grape Seed Proanthocyanidins | affects cotreatment, increases expression | 1 |
| Aldehydes | increases expression | 1 |
| Amiodarone | increases expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Cadmium | decreases expression, increases abundance | 1 |
| Catechin | affects cotreatment, increases expression | 1 |
| Diethylhexyl Phthalate | decreases expression | 1 |
| Silicon Dioxide | increases expression | 1 |
| Cadmium Chloride | decreases expression, increases abundance | 1 |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT01112683 | PHASE4 | COMPLETED | Efficacy and Safety of Memantine Hydrochloride in Enhancing the Cognitive Abilities of Young Adults With Down Syndrome |
| NCT04219280 | PHASE4 | RECRUITING | Evaluating Treatment of ADHD in Children with Down Syndrome |
| NCT04747275 | PHASE4 | TERMINATED | Use of Liquid Stable Levothyroxine in Trisomy 21 Pediatric Patients |
| NCT05458479 | PHASE4 | COMPLETED | Fluoxetine Treatment of Depression in Down Syndrome |
| NCT06911944 | PHASE4 | NOT_YET_RECRUITING | Amyloid Lowering for Alzheimer’s in Down’s With Donanemab Investigation |
| NCT07280468 | PHASE4 | RECRUITING | Endotype DIrected Treatment for OSA in Down Syndrome |
| NCT03414970 | PHASE3 | ACTIVE_NOT_RECRUITING | Hypofractionated Radiation Therapy After Mastectomy in Preventing Recurrence in Patients With Stage IIa-IIIa Breast Cancer |
| NCT00056329 | PHASE3 | UNKNOWN | Vitamin E in Aging Persons With Down Syndrome |
| NCT00754013 | PHASE3 | TERMINATED | Evaluating The Efficacy And Safety Of Donepezil Hydrochloride (Aricept) In The Treatment Of The Cognitive Dysfunction Exhibited By Children With Down Syndrome, Aged 6 To 10 |
| NCT00754052 | PHASE3 | TERMINATED | Evaluating The Efficacy And Safety Of Donepezil Hydrochloride (Aricept) In The Treatment Of The Cognitive Dysfunction Exhibited By Children With Down Syndrome, Aged 11 To 17 |
| NCT01190930 | PHASE3 | COMPLETED | Risk-Adapted Chemotherapy in Treating Younger Patients With Newly Diagnosed Standard-Risk Acute Lymphoblastic Leukemia or Localized B-Lineage Lymphoblastic Lymphoma |
| NCT01576705 | PHASE3 | COMPLETED | Efficacy Assessment of Systematic Treatment With Folinic Acid and Thyroid Hormone on Psychomotor Development of Down Syndrome Young Children |
| NCT01594346 | PHASE3 | COMPLETED | Multicenter Vitamin E Trial in Aging Persons With Down Syndrome |
| NCT02521493 | PHASE3 | ACTIVE_NOT_RECRUITING | Response-Based Chemotherapy in Treating Newly Diagnosed Acute Myeloid Leukemia or Myelodysplastic Syndrome in Younger Patients With Down Syndrome |
| NCT03914625 | PHASE3 | ACTIVE_NOT_RECRUITING | A Study to Investigate Blinatumomab in Combination With Chemotherapy in Patients With Newly Diagnosed B-Lymphoblastic Leukemia |
| NCT04801771 | PHASE3 | ACTIVE_NOT_RECRUITING | Effects of Hypoglossal Nerve Stimulation on Cognition and Language in Down Syndrome and Obstructive Sleep Apnea |
| NCT05528549 | PHASE3 | COMPLETED | Blood Flow and Blood Pressure Investigation in Down Syndrome |
| NCT06860373 | PHASE3 | TERMINATED | LIFE-DSR-Biomarker Sub-study of Biomarkers in Down Syndrome Related Alzheimer’s Disease (DS-AD) |
| NCT07135167 | PHASE3 | RECRUITING | Compassionate Use Study of Epi-ON Corneal Collagen Crosslinking Performed Using UVA Exposure on Eyes With Ectatic Corneal Diseases for Subjects With Down Syndrome |
| NCT07232134 | PHASE3 | RECRUITING | The Efficacy of Therapy in Patients With Acute Myeloid Leukemia and Down Syndrome in Russia |
| NCT07234695 | PHASE3 | RECRUITING | LEvetiracetam to Prevent Seizures in Symptomatic Alzheimer’s Disease in Adults With Down Syndrome |
| NCT07238465 | PHASE3 | RECRUITING | Exploring Sympathetic Nervous System Function in Individuals With Down Syndrome |
| NCT00461344 | PHASE2 | TERMINATED | Docetaxel + Doxorubicin as Neoadjuvant Chemotherapy in Patients With Breast Cancer |
| NCT07499999 | PHASE2 | NOT_YET_RECRUITING | Randomized Double-Blind Phase II Trial of Baby Exemestane Versus Baby Tamoxifen in Post-Menopausal Women at High Risk for Breast Cancer |
| NCT00570128 | PHASE2 | COMPLETED | Evaluating The Efficacy And Safety Of Donepezil Hydrochloride (HCl) (Aricept) In Treating Cognitive Dysfunction Exhibited By Children With Down Syndrome |
| NCT00675025 | PHASE2 | TERMINATED | Evaluating The Safety Of Donepezil Hydrochloride (Aricept) For Up To 1 Year In The Treatment Of The Cognitive Dysfunction Exhibited By Children With Down Syndrome - Follow-Up To A 10-Week, Double-Blind, Placebo-Controlled Trial |
| NCT00891917 | PHASE2 | WITHDRAWN | Liq-NOL Efficacy in Pediatric Patients With Down Syndrome |
| NCT00928304 | PHASE2 | COMPLETED | Phase II Study of Florbetaben (BAY94-9172) PET Imaging for Detection/Exclusion of Cerebral β-amyloid. |
| NCT01394796 | PHASE2 | COMPLETED | Egcg, a dyrk1a Inhibitor as Therapeutic Tool for Reversing Cognitive Deficits in Down Syndrome Individuals. |
| NCT01699711 | PHASE2 | COMPLETED | Normalization of dyrk1A and APP Function as an Approach to Improve Cognitive Performance and Decelerate AD Progression in DS Subjects: Epigallocatechin Gallate as Therapeutic Tool |
| NCT01791725 | PHASE2 | COMPLETED | A 4-Week Safety Study of Oral ELND005 in Young Adults With Down Syndrome Without Dementia |
| NCT01975545 | PHASE2 | UNKNOWN | Fluor Varnish With Silver Nanoparticles for Dental Remineralization in Patients With Trisomy 21 |
| NCT02024789 | PHASE2 | COMPLETED | A Study of RG1662 in Adults and Adolescents With Down Syndrome (CLEMATIS) |
| NCT02094053 | PHASE2 | COMPLETED | A Double-blind, Placebo-controlled Comparative Study and Open-label Extension Study to Confirm the Efficacy and Safety of E2020 in Subjects With Down Syndrome Having Regression Symptoms and Disabled Activities of Daily Living. |
| NCT02304302 | PHASE2 | COMPLETED | Down Syndrome Memantine Follow-up Study |
| NCT02484703 | PHASE2 | TERMINATED | A Study of RO5186582 in Down Syndrome Among Children 6 to 11 Years of Age |
| NCT02971254 | PHASE2 | COMPLETED | The Effects of Inhalational Anaesthetics in Cognitive Functions in Down Syndrome Patients |
| NCT03286634 | PHASE2 | ACTIVE_NOT_RECRUITING | ASIA Down Syndrome Acute Lymphoblastic Leukemia 2016 |
| NCT03538925 | PHASE2 | COMPLETED | Building Sentences With Preschoolers Who Use AAC |
| NCT04115878 | PHASE2 | COMPLETED | Medications for Obstructive Sleep Apnea In Children With Down Syndrome |
Related Atlas pages
- Associated diseases: spermatogenic failure 62
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Down syndrome, spermatogenic failure 62