RNF213
geneOn this page
Also known as KIAA1554NET57ALO17
Summary
RNF213 (ring finger protein 213, HGNC:14539) is a protein-coding gene on chromosome 17q25.3, encoding E3 ubiquitin-protein ligase RNF213 (Q63HN8). Atypical E3 ubiquitin ligase that can catalyze ubiquitination of both proteins and lipids, and which is involved in various processes, such as lipid metabolism, angiogenesis and cell-autonomous immunity.
This gene encodes a protein containing a C3HC4-type RING finger domain, which is a specialized type of Zn-finger that binds two atoms of zinc and is thought to be involved in mediating protein-protein interactions. The protein also contains an AAA domain, which is associated with ATPase activity. This gene is a susceptibility gene for Moyamoya disease, a vascular disorder of intracranial arteries. This gene is also a translocation partner in anaplastic large cell lymphoma and inflammatory myofibroblastic tumor cases, where a t(2;17)(p23;q25) translocation has been identified with the anaplastic lymphoma kinase (ALK) gene on chromosome 2, and a t(8;17)(q24;q25) translocation has been identified with the MYC gene on chromosome 8. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 57674 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Moyamoya disease 2 (Strong, GenCC)
- GWAS associations: 13
- Clinical variants (ClinVar): 1,043 total — 6 pathogenic, 13 likely-pathogenic
- Phenotypes (HPO): 9
- Druggable target: yes
- Cancer driver (intOGen): loss-of-function (tumor-suppressor-like) across 10 cancer types
- MANE Select transcript:
NM_001256071
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:14539 |
| Approved symbol | RNF213 |
| Name | ring finger protein 213 |
| Location | 17q25.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA1554, NET57, ALO17 |
| Ensembl gene | ENSG00000173821 |
| Ensembl biotype | protein_coding |
| OMIM | 613768 |
| Entrez | 57674 |
Gene structure
Transcript identifiers
Ensembl transcripts: 20 — 15 retained_intron, 4 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000319921, ENST00000411702, ENST00000427003, ENST00000508628, ENST00000558116, ENST00000558488, ENST00000559070, ENST00000559603, ENST00000559864, ENST00000560083, ENST00000560694, ENST00000570776, ENST00000571908, ENST00000572622, ENST00000573038, ENST00000573548, ENST00000573919, ENST00000574060, ENST00000574909, ENST00000582970
RefSeq mRNA: 4 — MANE Select: NM_001256071
NM_001256071, NM_001410195, NM_020914, NM_020954
CCDS: CCDS11772, CCDS32761, CCDS58606
Canonical transcript exons
ENST00000582970 — 68 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001191774 | 80381547 | 80381727 |
| ENSE00001235391 | 80344678 | 80348286 |
| ENSE00001260361 | 80273241 | 80273404 |
| ENSE00001260391 | 80287815 | 80288363 |
| ENSE00001390612 | 80260852 | 80260902 |
| ENSE00001399527 | 80354019 | 80354166 |
| ENSE00001400825 | 80351685 | 80351803 |
| ENSE00001402870 | 80353512 | 80353666 |
| ENSE00001403639 | 80350301 | 80350396 |
| ENSE00001406208 | 80352940 | 80353059 |
| ENSE00001410365 | 80349770 | 80349906 |
| ENSE00001464743 | 80343857 | 80344015 |
| ENSE00001464744 | 80343132 | 80343325 |
| ENSE00002022415 | 80337586 | 80337726 |
| ENSE00002041046 | 80339201 | 80340356 |
| ENSE00002077270 | 80336161 | 80336378 |
| ENSE00002677982 | 80263574 | 80263778 |
| ENSE00002725005 | 80393345 | 80398794 |
| ENSE00003460158 | 80386250 | 80386430 |
| ENSE00003470916 | 80295557 | 80295813 |
| ENSE00003476514 | 80374458 | 80374589 |
| ENSE00003481372 | 80363609 | 80363790 |
| ENSE00003481809 | 80317188 | 80317277 |
| ENSE00003485264 | 80319190 | 80319312 |
| ENSE00003490899 | 80354441 | 80354576 |
| ENSE00003497941 | 80363102 | 80363314 |
| ENSE00003500163 | 80376301 | 80376543 |
| ENSE00003504455 | 80388612 | 80388689 |
| ENSE00003506077 | 80377762 | 80377796 |
| ENSE00003510221 | 80289659 | 80289837 |
| ENSE00003511048 | 80375760 | 80375870 |
| ENSE00003514026 | 80372521 | 80372734 |
| ENSE00003520332 | 80367961 | 80368143 |
| ENSE00003523788 | 80385538 | 80385621 |
| ENSE00003524513 | 80380831 | 80380987 |
| ENSE00003532369 | 80328328 | 80328477 |
| ENSE00003539173 | 80371874 | 80371985 |
| ENSE00003541281 | 80360061 | 80360206 |
| ENSE00003542630 | 80379620 | 80379714 |
| ENSE00003544359 | 80383677 | 80383928 |
| ENSE00003544895 | 80298321 | 80298518 |
| ENSE00003556604 | 80372975 | 80373165 |
| ENSE00003562184 | 80325030 | 80325198 |
| ENSE00003564454 | 80369768 | 80369867 |
| ENSE00003579768 | 80327816 | 80327989 |
| ENSE00003585975 | 80288633 | 80288755 |
| ENSE00003586204 | 80334105 | 80334270 |
| ENSE00003589610 | 80364433 | 80364553 |
| ENSE00003592435 | 80367748 | 80367848 |
| ENSE00003596621 | 80306252 | 80306468 |
| ENSE00003597388 | 80382979 | 80383070 |
| ENSE00003597920 | 80369502 | 80369671 |
| ENSE00003600100 | 80290570 | 80290728 |
| ENSE00003608782 | 80337833 | 80337997 |
| ENSE00003620753 | 80313012 | 80313167 |
| ENSE00003623256 | 80309018 | 80309171 |
| ENSE00003624150 | 80291628 | 80291827 |
| ENSE00003631769 | 80376882 | 80376963 |
| ENSE00003639848 | 80307128 | 80307201 |
| ENSE00003640143 | 80358288 | 80358479 |
| ENSE00003643863 | 80390012 | 80390196 |
| ENSE00003647714 | 80386690 | 80386891 |
| ENSE00003652833 | 80294720 | 80295003 |
| ENSE00003665518 | 80389828 | 80389917 |
| ENSE00003668803 | 80361734 | 80361888 |
| ENSE00003677343 | 80332006 | 80332631 |
| ENSE00003678069 | 80385039 | 80385171 |
| ENSE00003679533 | 80389173 | 80389367 |
Expression profiles
Bgee: expression breadth ubiquitous, 252 present calls, max score 99.03.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 17.3930 / max 216.9864, expressed in 1805 samples.
FANTOM5 promoters (7 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 163230 | 15.5061 | 1803 |
| 163235 | 0.8148 | 201 |
| 163231 | 0.5817 | 308 |
| 163232 | 0.2738 | 96 |
| 163237 | 0.1055 | 34 |
| 163236 | 0.0891 | 36 |
| 163241 | 0.0221 | 6 |
Top tissues by expression
255 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| granulocyte | CL:0000094 | 99.03 | gold quality |
| metanephros cortex | UBERON:0010533 | 98.69 | gold quality |
| pancreatic ductal cell | CL:0002079 | 98.30 | gold quality |
| spleen | UBERON:0002106 | 98.11 | gold quality |
| sural nerve | UBERON:0015488 | 98.02 | gold quality |
| bone marrow cell | CL:0002092 | 97.87 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 97.68 | gold quality |
| leukocyte | CL:0000738 | 97.65 | gold quality |
| monocyte | CL:0000576 | 97.56 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 97.55 | gold quality |
| right uterine tube | UBERON:0001302 | 97.45 | gold quality |
| mucosa of stomach | UBERON:0001199 | 97.41 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 97.36 | gold quality |
| lymph node | UBERON:0000029 | 97.33 | gold quality |
| upper lobe of lung | UBERON:0008948 | 97.23 | gold quality |
| right adrenal gland | UBERON:0001233 | 97.21 | gold quality |
| vermiform appendix | UBERON:0001154 | 97.18 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 97.13 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 97.10 | gold quality |
| right lung | UBERON:0002167 | 97.06 | gold quality |
| thyroid gland | UBERON:0002046 | 96.84 | gold quality |
| left adrenal gland | UBERON:0001234 | 96.81 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 96.79 | gold quality |
| blood | UBERON:0000178 | 96.64 | gold quality |
| adrenal cortex | UBERON:0001235 | 96.51 | gold quality |
| cortex of kidney | UBERON:0001225 | 96.40 | gold quality |
| tibial nerve | UBERON:0001323 | 96.38 | gold quality |
| caecum | UBERON:0001153 | 96.29 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 96.25 | gold quality |
| gall bladder | UBERON:0002110 | 96.17 | gold quality |
Single-cell (SCXA)
Detected in 15 experiment(s), a significant marker in 9.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-53 | yes | 1963.28 |
| E-MTAB-6678 | yes | 1556.20 |
| E-CURD-122 | yes | 44.69 |
| E-HCAD-10 | yes | 6.96 |
| E-MTAB-9801 | yes | 5.87 |
| E-GEOD-130148 | yes | 4.86 |
| E-MTAB-9067 | yes | 4.74 |
| E-CURD-119 | yes | 4.53 |
| E-MTAB-6379 | no | 1629.56 |
| E-CURD-97 | no | 1341.06 |
| E-CURD-89 | no | 1336.21 |
| E-CURD-135 | no | 1102.64 |
| E-MTAB-6075 | no | 709.39 |
| E-CURD-112 | no | 3.45 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): STAT1
Literature-anchored findings (GeneRIF, showing 40)
- KIAA1618 (ALO17) ia a novel fusion partner of anaplastic lymphoma kinase in anaplastic large-cell lymphoma and inflammatory myofibroblastic tumor cases. (PMID:12112524)
- involvement of RNF213 in genetic susceptibility to moyamoya disease (PMID:21799892)
- The homozygous c.14576G>A variant in RNF213 could be a good DNA biomarker for predicting the severe type of moyamoya disease (PMID:22377813)
- Moyamoya disease is often accompanied by hypertension. RNF213 has been identified as a susceptibility gene for this disease. Associations of p.R4810K (rs112735431, ss179362673) of RNF213 with blood pressure were investigated in moyamoya disease patients. (PMID:22878964)
- A homozygous c.14576G>A variant of RNF213 gene is associated with neurological deficits with vasculopathy in moyamoya disease. (PMID:22931863)
- We propose the existence of a new entity of intracranial major artery stenosis/occlusion caused by the c.14576G>A variant in RNF213. (PMID:23010677)
- RNF213 mutations are associated with MMD susceptibility in Han Chinese. The ischemic type MMD is particularly related to the R4810K mutation. (PMID:23110205)
- There are strong associations between p.R4859K and p.R4810K polymorphisms of the RNF213 gene and Moyamoya disease (Meta-analysis). (PMID:23466837)
- the influences of PDGFRB, MMP-3, and TIMP-2 on MMD may be unremarkable in Chinese Hans. There may be no prominent interaction among these five gene polymorphisms on the occurrence of MMD. (PMID:23769926)
- RNF213 R4810K reduced angiogenic activities of iPSECs from patients with MMD, suggesting that it is a promising in vitro model for MMD. (PMID:23850618)
- A particular subset of patients with various phenotypes of ICASO has a common genetic variant, RNF213 c.14576G>A, indicating that RNF213 c.14576G>A variant is a high-risk allele for ICASO. (PMID:23970789)
- RNF213 R4810K induced mitotic abnormalities and increased risk of genomic instability. (PMID:23994138)
- the moyamoya disease-associated gene product is a unique protein that functions as ubiquitin ligase and AAA+ ATPase, which possibly contributes to vascular development through mechanical processes in the cell. (PMID:24658080)
- Study identified of a novel RNF213 variant in a three-generation family of European ancestry with intracerebral vasculopathy displaying variability in age of onset and clinical severity (PMID:25043520)
- RNF213 was not associated with bipolar disorder or schizophrenia. (PMID:25053281)
- Alterations in RNF213 predispose patients of diverse ethnicities to Moyamoya disease. (PMID:25278557)
- vascular wall was significantly thinner in RNF213-/- mice at 14 days (PMID:25383461)
- Nonatherosclerotic quasi-MMD did not have RNF213 c.14576G>A variant. (PMID:25817623)
- This study demonstrated that the RNF213 mutation should form part of the diagnostic workup for moyamoya in clinical practice. (PMID:25956231)
- Not only p.4810K but also other functional missense variants of RNF213 conferred susceptibility to moyamoya disease(MMD). (PMID:25964206)
- Gene-based association analyses shows nominal significant association with multifocal fibromuscular dysplasia for RNF213. (PMID:26147384)
- We herein report pediatric sibling patients of moyamoya disease who have homozygous wild-type c.14576G>A variant in RNF213, showing different clinical course and disease severity. (PMID:26277359)
- RNF213 plays unique roles in endothelial cells for proper gene expressions in response to inflammatory signals from environments. (PMID:26278786)
- This is the first report, to our knowledge, of different moyamoya disease phenotypes in a familial case involving the same heterozygous c.14429G > A variant in RNF213. (PMID:26315205)
- The findings indicate that the c.14429G>A (p.R4810K) allele of RNF213 is strongly associated with Korean patients with MMD. The homozygous c.14429G>A (p.R4810K) variant is particularly related to early-onset MMD. (PMID:26430847)
- results confirm that the RNF213 p.Arg4810Lys variant is not uncommon in the general Korean population and provide reference data for the association of this variant and MMD (PMID:26590131)
- Results suggested that rs112735431 in RNF213 was associated with increased risk of moyamoya disease, especially among Japanese and Korean compared with Chinese. [meta-analysis]. (PMID:26847828)
- The RNF213 c.14576G>A variant is more common in NF-1 patients who develop moyamoya syndrome than in NF-1 patients without moyamoya syndrome. (PMID:26849809)
- is a susceptibility gene not only for moyamoya disease but also for intracranial atherosclerotic stenosis in East Asians. (PMID:27253870)
- PTP1B/RNF213/alpha-KGDD pathway is critical for survival of HER2(+) breast cancer, and possibly other malignancies, in the hypoxic tumour microenvironment (PMID:27323329)
- Caveolin-1 level was decreased in patients with Moyamoya disease and markedly decreased in RNF213 variant carriers. Path analysis showed that the presence of the RNF213 variant was associated with caveolin-1 levels that could lead to Moyamoya disease. (PMID:27462098)
- RNF213 p.R4810K polymorphism was significantly associated with quasi-moyamoya disease. (PMID:27476341)
- Case-control study and meta-analysis both provide evidence of an association between the rs112735431 polymorphism in the RNF213 gene and moyamoya risk. (PMID:27515544)
- Both RNF213 D4013N and V4146A significantly decreased re-endothelialization in the migration assay compared with RNF213 WT and the control vector. (PMID:27736983)
- We found that RNF213 single nucleotide polymorphism rs6565666 was associated with intracranial aneurysms in French-Canadian individuals. (PMID:27745834)
- RNF213 is not only associated with MMD but also associated with intracranial major artery stenosis. The genotypes of RNF213 correlate with the phenotypes of MMD. (PMID:27748344)
- Moyamoya vasculopathy shows a genetic mutational gradient decreasing from East to West. (PMID:27787485)
- The p.R4810K variant was associated with atherosclerotic and autoimmune quasi-Moyamoya disease in a Chinese population, and a lower prevalence of this variant in patients with quasi-Moyamoya disease compared with patients with Moyamoya disease was observed. (PMID:28063898)
- Data indicate that mysterin/RNF213 is a substrate of ubiquitin specific protease 15 (USP15), and that the conserved skipping of exon 7 significantly decreases its specific affinity for mysterin. (PMID:28276505)
- This study suggests that the rs112735431 polymorphism of the RNF213 may be linked to the hypertension in moyamoya disease. (PMID:28320162)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | rnf213a | ENSDARG00000099465 |
| danio_rerio | ENSDARG00000113458 | |
| mus_musculus | Rnf213 | ENSMUSG00000070327 |
| rattus_norvegicus | Rnf213 | ENSRNOG00000029658 |
Protein
Protein identifiers
E3 ubiquitin-protein ligase RNF213 — Q63HN8 (reviewed: Q63HN8)
Alternative names: ALK lymphoma oligomerization partner on chromosome 17, E3 ubiquitin-lipopolysaccharide ligase RNF213, Mysterin, RING finger protein 213
All UniProt accessions (4): Q63HN8, A0A0A0MTC1, A0A0A0MTR7, I3L3H9
UniProt curated annotations — full annotation on UniProt →
Function. Atypical E3 ubiquitin ligase that can catalyze ubiquitination of both proteins and lipids, and which is involved in various processes, such as lipid metabolism, angiogenesis and cell-autonomous immunity. Acts as a key immune sensor by catalyzing ubiquitination of the lipid A moiety of bacterial lipopolysaccharide (LPS) via its RZ-type zinc-finger: restricts the proliferation of cytosolic bacteria, such as Salmonella, by generating the bacterial ubiquitin coat through the ubiquitination of LPS. Also acts indirectly by mediating the recruitment of the LUBAC complex, which conjugates linear polyubiquitin chains. Ubiquitination of LPS triggers cell-autonomous immunity, such as antibacterial autophagy, leading to degradation of the microbial invader. Involved in lipid metabolism by regulating fat storage and lipid droplet formation; act by inhibiting the lipolytic process. Also regulates lipotoxicity by inhibiting desaturation of fatty acids. Also acts as an E3 ubiquitin-protein ligase via its RING-type zinc finger: mediates ‘Lys-63’-linked ubiquitination of target proteins. Involved in the non-canonical Wnt signaling pathway in vascular development: acts by mediating ubiquitination and degradation of FLNA and NFATC2 downstream of RSPO3, leading to inhibit the non-canonical Wnt signaling pathway and promoting vessel regression. Also has ATPase activity; ATPase activity is required for ubiquitination of LPS.
Subunit / interactions. Monomer. Interacts with UBE2L3/UBCH7; UBE2L3/UBCH7 is the most efficient ubiquitin-conjugating enzyme E2 for the ubiquitin ligase activity. Interacts with UBE2N/UBC13; promoting ‘Lys-63’-linked ubiquitination of target proteins. (Microbial infection) Interacts with M.tuberculosis protein Rv3655c, which impairs caspase-8 activation and suppresses macrophage apoptosis by blocking the extrinsic pathway.
Subcellular location. Cytoplasm. Cytosol. Lipid droplet.
Tissue specificity. Widely expressed (at protein level). Major isoform detected in all tissues examined. Minor isoform with restricted expression.
Post-translational modifications. Autoubiquitinated.
Disease relevance. Moyamoya disease 2 (MYMY2) [MIM:607151] A progressive cerebral angiopathy characterized by bilateral intracranial carotid artery stenosis and telangiectatic vessels in the region of the basal ganglia. The abnormal vessels resemble a ‘puff of smoke’ (moyamoya) on cerebral angiogram. Affected individuals can develop transient ischemic attacks and/or cerebral infarction, and rupture of the collateral vessels can cause intracranial hemorrhage. Hemiplegia of sudden onset and epileptic seizures constitute the prevailing presentation in childhood, while subarachnoid bleeding occurs more frequently in adults. Disease susceptibility is associated with variants affecting the gene represented in this entry. A chromosomal aberration involving RNF213 is associated with anaplastic large-cell lymphoma (ALCL). Translocation t(2;17)(p23;q25) with ALK.
Domain organisation. Composed of an N-terminal stalk, a dynein-like core comprised of two catalytically active and four inactive ATPase domains, and a C-terminal E3 module. The ATPase regions do not generate movement but rather act like an intricate molecular ‘switch’. The RING-type zinc finger domain is required for the ubiquitin-protein ligase activity. The RZ-type (RNF213-ZNFX1) zinc-finger is required for the ubiquitination of the lipid A moiety of bacterial lipopolysaccharide (LPS).
Induction. Down-regulated by let-7c miRNA, which binds to the 3’-UTR transcript of RNF213. Induced by pro-inflammatory cytokines. (Microbial infection) Up-regulated in macrophages infected by M.tuberculosis.
Pathway. Protein modification; protein ubiquitination.
Similarity. Belongs to the AAA ATPase family.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q63HN8-3 | 1 | yes |
| Q63HN8-4 | 2 | |
| Q63HN8-5 | 3 | |
| Q63HN8-6 | 4 |
RefSeq proteins (4): NP_001243000, NP_001397124, NP_065965, NP_066005 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001841 | Znf_RING | Domain |
| IPR003593 | AAA+_ATPase | Domain |
| IPR013083 | Znf_RING/FYVE/PHD | Homologous_superfamily |
| IPR018957 | Znf_C3HC4_RING-type | Domain |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
| IPR031248 | RNF213 | Family |
| IPR046439 | ZF_RZ_dom | Domain |
Pfam: PF00097, PF20173
Catalyzed reactions (Rhea), 1 shown:
- ATP + H2O = ADP + phosphate + H(+) (RHEA:13065)
UniProt features (484 total): helix 229, strand 88, sequence variant 64, turn 38, binding site 18, sequence conflict 15, compositionally biased region 9, mutagenesis site 6, splice variant 5, modified residue 4, zinc finger region 2, region of interest 2, chain 1, active site 1, cross-link 1, coiled-coil region 1
Structure
Experimental structures (PDB)
4 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9JTA | X-RAY DIFFRACTION | 1.7 |
| 8S24 | ELECTRON MICROSCOPY | 3 |
| 9G08 | ELECTRON MICROSCOPY | 3.3 |
| 9G09 | ELECTRON MICROSCOPY | 3.4 |
Predicted structure (AlphaFold)
No AlphaFold model available for Q63HN8 — AlphaFold DB does not currently provide models for proteins above ~3000 aa.
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 4516 (nucleophile; for e3 ubiquitin-lipopolysaccharide ligase activity)
Ligand- & substrate-binding residues (18): 1995–2000; 2098; 2155; 2216; 2499; 2574; 3997; 4000; 4012; 4014; 4017; 4020 …
Post-translational modifications (5): 208, 217, 1258, 2273, 1151
Mutagenesis-validated functional residues (6):
| Position | Phenotype |
|---|---|
| 2426 | impaired atp-binding leading to decreased atpase activity; abolished ubiquitination of lipopolysaccharide. in mutant a1a |
| 2488 | decreased atpase activity; abolished ubiquitination of lipopolysaccharide. in mutant b1b2; abolished atpase activity and |
| 2488 | loss of atpase hydrolysis. |
| 2775 | impaired atp-binding leading to decreased atpase activity; abolished ubiquitination of lipopolysaccharide. in mutant a1a |
| 2845 | decreased atpase activity; abolished ubiquitination of lipopolysaccharide. in mutant b1b2; abolished atpase activity and |
| 4509 | abolished ability to ubiquitinate lipopolysaccharide. |
Function
Pathways and Gene Ontology
Reactome pathways
13 pathways
| ID | Pathway |
|---|---|
| R-HSA-9635465 | Suppression of apoptosis |
| R-HSA-9725370 | Signaling by ALK fusions and activated point mutants |
| R-HSA-983168 | Antigen processing: Ubiquitination & Proteasome degradation |
| R-HSA-1280218 | Adaptive Immune System |
| R-HSA-1643685 | Disease |
| R-HSA-168256 | Immune System |
| R-HSA-5663202 | Diseases of signal transduction by growth factor receptors and second messengers |
| R-HSA-5663205 | Infectious disease |
| R-HSA-9635486 | Infection with Mycobacterium tuberculosis |
| R-HSA-9637690 | Response of Mtb to phagocytosis |
| R-HSA-9700206 | Signaling by ALK in cancer |
| R-HSA-9824439 | Bacterial Infection Pathways |
| R-HSA-983169 | Class I MHC mediated antigen processing & presentation |
MSigDB gene sets: 305 (showing top):
GOBP_LIPID_MODIFICATION, MYOGENIN_Q6, CCAWYNNGAAR_UNKNOWN, REACTOME_ADAPTIVE_IMMUNE_SYSTEM, MODULE_255, REACTOME_CLASS_I_MHC_MEDIATED_ANTIGEN_PROCESSING_PRESENTATION, REACTOME_ANTIGEN_PROCESSING_UBIQUITINATION_PROTEASOME_DEGRADATION, GCANCTGNY_MYOD_Q6, GOBP_NON_CANONICAL_WNT_SIGNALING_PATHWAY, GOBP_REGULATION_OF_NON_CANONICAL_WNT_SIGNALING_PATHWAY, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, MODULE_317, JOHANSSON_GLIOMAGENESIS_BY_PDGFB_UP, GOBP_REGULATION_OF_WNT_SIGNALING_PATHWAY, GOBP_XENOPHAGY
GO Biological Process (14): angiogenesis (GO:0001525), sprouting angiogenesis (GO:0002040), immune system process (GO:0002376), ubiquitin-dependent protein catabolic process (GO:0006511), protein ubiquitination (GO:0016567), regulation of lipid metabolic process (GO:0019216), defense response to bacterium (GO:0042742), protein autoubiquitination (GO:0051865), protein K63-linked ubiquitination (GO:0070534), xenophagy (GO:0098792), lipid ubiquitination (GO:0120323), lipid droplet formation (GO:0140042), negative regulation of non-canonical Wnt signaling pathway (GO:2000051), lipid metabolic process (GO:0006629)
GO Molecular Function (10): ubiquitin-protein transferase activity (GO:0004842), ATP binding (GO:0005524), zinc ion binding (GO:0008270), ATP hydrolysis activity (GO:0016887), ubiquitin protein ligase activity (GO:0061630), nucleotide binding (GO:0000166), catalytic activity (GO:0003824), transferase activity (GO:0016740), hydrolase activity (GO:0016787), metal ion binding (GO:0046872)
GO Cellular Component (5): nucleolus (GO:0005730), cytoplasm (GO:0005737), lipid droplet (GO:0005811), cytosol (GO:0005829), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-10 pathways:
| Category | Pathways |
|---|---|
| Disease | 2 |
| Response of Mtb to phagocytosis | 1 |
| Signaling by ALK in cancer | 1 |
| Class I MHC mediated antigen processing & presentation | 1 |
| Immune System | 1 |
| Bacterial Infection Pathways | 1 |
| Infection with Mycobacterium tuberculosis | 1 |
| Diseases of signal transduction by growth factor receptors and second messengers | 1 |
| Infectious disease | 1 |
| Adaptive Immune System | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| protein ubiquitination | 2 |
| catalytic activity | 2 |
| intracellular membraneless organelle | 2 |
| blood vessel morphogenesis | 1 |
| anatomical structure formation involved in morphogenesis | 1 |
| angiogenesis | 1 |
| biological_process | 1 |
| modification-dependent protein catabolic process | 1 |
| protein modification by small protein conjugation | 1 |
| lipid metabolic process | 1 |
| regulation of primary metabolic process | 1 |
| defense response | 1 |
| response to bacterium | 1 |
| protein polyubiquitination | 1 |
| macroautophagy | 1 |
| defense response to other organism | 1 |
| lipid modification by small protein conjugation | 1 |
| lipid storage | 1 |
| lipid droplet organization | 1 |
| membraneless organelle assembly | 1 |
| negative regulation of Wnt signaling pathway | 1 |
| non-canonical Wnt signaling pathway | 1 |
| regulation of non-canonical Wnt signaling pathway | 1 |
| primary metabolic process | 1 |
| ubiquitin-like protein transferase activity | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| transition metal ion binding | 1 |
| ribonucleoside triphosphate phosphatase activity | 1 |
| ATP-dependent activity | 1 |
| ubiquitin-protein transferase activity | 1 |
| ubiquitin-like protein ligase activity | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| molecular_function | 1 |
| cation binding | 1 |
| nuclear lumen | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
Protein interactions and networks
STRING
2034 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RNF213 | NF1 | P21359 | 629 |
| RNF213 | RAB40B | Q12829 | 584 |
| RNF213 | NPM1 | P06748 | 557 |
| RNF213 | ALK | Q9UM73 | 546 |
| RNF213 | SLC26A11 | Q86WA9 | 537 |
| RNF213 | MYH9 | P35579 | 533 |
| RNF213 | UBXN11 | Q5T124 | 500 |
| RNF213 | SDHD | O14521 | 493 |
| RNF213 | ATIC | P31939 | 487 |
| RNF213 | GUCY1A1 | Q02108 | 474 |
| RNF213 | SDHB | P21912 | 450 |
| RNF213 | CMC4 | P56277 | 448 |
| RNF213 | MYC | P01106 | 444 |
| RNF213 | CCER2 | I3L3R5 | 439 |
| RNF213 | RET | P07949 | 436 |
| RNF213 | TPM4 | P07226 | 436 |
IntAct
126 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| SCN2B | EXOC5 | psi-mi:“MI:0914”(association) | 0.640 |
| SDC2 | PDPK1 | psi-mi:“MI:0914”(association) | 0.640 |
| LAMP3 | METTL15 | psi-mi:“MI:0914”(association) | 0.530 |
| PTPN1 | GOLIM4 | psi-mi:“MI:0914”(association) | 0.530 |
| FAM174A | BLTP3B | psi-mi:“MI:0914”(association) | 0.530 |
| NPDC1 | TCAF2 | psi-mi:“MI:0914”(association) | 0.530 |
| STK16 | UNC119B | psi-mi:“MI:0914”(association) | 0.530 |
| CD40 | EXOC5 | psi-mi:“MI:0914”(association) | 0.530 |
| ANKRD22 | ESYT2 | psi-mi:“MI:0914”(association) | 0.530 |
| DNAJB8 | DNAJB6 | psi-mi:“MI:0914”(association) | 0.530 |
| ILVBL | SLC33A1 | psi-mi:“MI:0914”(association) | 0.530 |
| DDX21 | MED19 | psi-mi:“MI:2364”(proximity) | 0.480 |
| vpu | SCAMP3 | psi-mi:“MI:0914”(association) | 0.460 |
| RNF213 | H1-1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| PLAC9 | RNF213 | psi-mi:“MI:0915”(physical association) | 0.370 |
| Rpl35 | RPS6 | psi-mi:“MI:0914”(association) | 0.350 |
| Ube2k | psi-mi:“MI:0914”(association) | 0.350 | |
| Kif4 | RNF213 | psi-mi:“MI:0914”(association) | 0.350 |
| RNASEH2B | SAP18 | psi-mi:“MI:0914”(association) | 0.350 |
| PTPN1 | psi-mi:“MI:0914”(association) | 0.350 | |
| MRPL50 | MRPL43 | psi-mi:“MI:0914”(association) | 0.350 |
| NUDCD1 | TUBAL3 | psi-mi:“MI:0914”(association) | 0.350 |
| NUDCD1 | DNAJB2 | psi-mi:“MI:0914”(association) | 0.350 |
| RNF213 | GNB1 | psi-mi:“MI:0914”(association) | 0.350 |
| UNC93B1 | psi-mi:“MI:0914”(association) | 0.350 | |
| DLK2 | SLC22A23 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (208): RNF213 (Two-hybrid), RNF213 (Two-hybrid), RNF213 (Two-hybrid), RNF213 (Two-hybrid), RNF213 (Two-hybrid), UBXN11 (Two-hybrid), KRT40 (Two-hybrid), RNF213 (Affinity Capture-MS), RNF213 (Affinity Capture-MS), RNF213 (Affinity Capture-MS), RNF213 (Affinity Capture-MS), RNF213 (Affinity Capture-MS), RNF213 (Affinity Capture-MS), RNF213 (Affinity Capture-MS), RNF213 (Affinity Capture-MS)
ESM2 similar proteins: A0A0M3U1B0, A0A1L8EYB2, A0JMF7, A1L2Y1, A2ALV5, A9JRX0, B2GUZ2, D3ZSP7, F1QB81, O35892, O70608, O75113, P23497, P70347, Q0P5X5, Q13129, Q16533, Q2T9I9, Q3U1D0, Q5CZC0, Q5H9M0, Q5REF4, Q5RHB5, Q5SW75, Q5T4T6, Q5T5J6, Q5XG69, Q5ZLE9, Q60664, Q63HN8, Q7M6U3, Q7Z4H7, Q80VH0, Q8BVK9, Q8C263, Q8CCC3, Q8NA03, Q90WN7, Q92844, Q96QP1
Diamond homologs: A0A0R4I9Y1, A0A0R4IBK5, A6NK02, B6VQ60, E9Q555, F4I443, Q63HN8, Q2TBT8, Q66JE4, Q6NZ21, Q6PJ69, Q8R151, Q96LD4, Q9P2E3, A0A1L8FG46, A8Y4B2, E7FDW2, O14212, O54952, O60106, P38398, P68907, Q00940, Q1XHU0, Q20798, Q2KHN1, Q3UF64, Q3ZCC3, Q4WZJ6, Q5A1M4, Q5RAG4, Q5ZM74, Q69ZS0, Q6FPI4, Q6J2U6, Q6J6I8, Q6J6I9, Q6J6J0, Q6MFZ5, Q6ZMN7
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| Ub:E2 | “up-regulates activity” | RNF213 | ubiquitination |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 175 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Transport of vitamins, nucleosides, and related molecules | 5 | 13.6× | 9e-03 |
| SLC-mediated transmembrane transport | 9 | 5.3× | 1e-02 |
Disease & clinical
Cancer significance
From intOGen — cancer-driver classification: loss-of-function (tumor-suppressor-like) across 10 cancer types — ANGS, BLCA, CCRCC, CHOL, ESCA, GBM, LUSC, MBL, PRAD, UCEC.
Clinical variants and AI predictions
ClinVar
1043 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 6 |
| Likely pathogenic | 13 |
| Uncertain significance | 371 |
| Likely benign | 321 |
| Benign | 174 |
Top pathogenic / likely-pathogenic (19)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1184843 | NM_001256071.3(RNF213):c.11986_11989delinsGGGTTAG (p.Pro3996_Cys3997delinsGlyLeuGly) | Pathogenic |
| 1490618 | NM_001256071.3(RNF213):c.12355C>T (p.Pro4119Ser) | Pathogenic |
| 1686128 | NM_001256071.3(RNF213):c.12391C>T (p.Arg4131Cys) | Pathogenic |
| 3252942 | NM_001256071.3(RNF213):c.12352T>C (p.Ser4118Pro) | Pathogenic |
| 3602934 | NM_001256071.3(RNF213):c.12034T>C (p.Cys4012Arg) | Pathogenic |
| 870408 | NM_001256071.3(RNF213):c.12353C>T (p.Ser4118Phe) | Pathogenic |
| 1708407 | NM_001256071.3(RNF213):c.12028C>G (p.Leu4010Val) | Likely pathogenic |
| 1710243 | NM_001256071.3(RNF213):c.14822T>A (p.Val4941Glu) | Likely pathogenic |
| 1804036 | NM_001256071.3(RNF213):c.114C>G (p.Asn38Lys) | Likely pathogenic |
| 210001 | NM_001256071.3(RNF213):c.12343_12345del (p.Lys4115del) | Likely pathogenic |
| 2430341 | NM_001256071.3(RNF213):c.12050G>A (p.Cys4017Tyr) | Likely pathogenic |
| 2721123 | NM_001256071.3(RNF213):c.12050G>C (p.Cys4017Ser) | Likely pathogenic |
| 2760912 | NM_001256071.3(RNF213):c.1102G>A (p.Val368Met) | Likely pathogenic |
| 3065130 | NM_001256071.3(RNF213):c.13641-2A>G | Likely pathogenic |
| 417846 | NM_001256071.3(RNF213):c.12040C>A (p.His4014Asn) | Likely pathogenic |
| 4687912 | NM_001256071.3(RNF213):c.10947dup (p.Glu3650fs) | Likely pathogenic |
| 637049 | NM_001256071.3(RNF213):c.12059G>T (p.Cys4020Phe) | Likely pathogenic |
| 982215 | NM_001256071.3(RNF213):c.12360C>G (p.Phe4120Leu) | Likely pathogenic |
| 985230 | NM_001256071.3(RNF213):c.12365A>C (p.Asp4122Ala) | Likely pathogenic |
SpliceAI
11259 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:80273239:A:AG | acceptor_gain | 1.0000 |
| 17:80273240:G:GG | acceptor_gain | 1.0000 |
| 17:80273402:G:GT | donor_gain | 1.0000 |
| 17:80273402:GAA:G | donor_gain | 1.0000 |
| 17:80273405:G:GG | donor_gain | 1.0000 |
| 17:80280048:GTCT:G | donor_gain | 1.0000 |
| 17:80280049:TCTT:T | donor_gain | 1.0000 |
| 17:80287813:A:AG | acceptor_gain | 1.0000 |
| 17:80287814:G:GG | acceptor_gain | 1.0000 |
| 17:80289657:AGGA:A | acceptor_loss | 1.0000 |
| 17:80289658:GGAA:G | acceptor_gain | 1.0000 |
| 17:80289809:G:GT | donor_gain | 1.0000 |
| 17:80289824:G:GT | donor_gain | 1.0000 |
| 17:80290565:A:AG | acceptor_gain | 1.0000 |
| 17:80290568:A:AG | acceptor_gain | 1.0000 |
| 17:80290568:AGCAC:A | acceptor_gain | 1.0000 |
| 17:80290569:G:GA | acceptor_gain | 1.0000 |
| 17:80290569:GC:G | acceptor_gain | 1.0000 |
| 17:80290569:GCA:G | acceptor_gain | 1.0000 |
| 17:80290569:GCAC:G | acceptor_gain | 1.0000 |
| 17:80290569:GCACG:G | acceptor_gain | 1.0000 |
| 17:80290726:CAG:C | donor_loss | 1.0000 |
| 17:80290727:AG:A | donor_loss | 1.0000 |
| 17:80290728:GG:G | donor_loss | 1.0000 |
| 17:80290729:G:C | donor_loss | 1.0000 |
| 17:80294913:G:GG | donor_gain | 1.0000 |
| 17:80295647:G:GG | donor_gain | 1.0000 |
| 17:80295768:A:G | donor_gain | 1.0000 |
| 17:80298315:TTCCA:T | acceptor_loss | 1.0000 |
| 17:80298317:CCAGC:C | acceptor_loss | 1.0000 |
AlphaMissense
34423 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:80346660:G:C | K2775N | 0.999 |
| 17:80346660:G:T | K2775N | 0.999 |
| 17:80347022:G:C | R2896P | 0.999 |
| 17:80345612:A:T | K2426I | 0.998 |
| 17:80346244:A:C | S2637R | 0.998 |
| 17:80346246:C:A | S2637R | 0.998 |
| 17:80346246:C:G | S2637R | 0.998 |
| 17:80346926:T:C | L2864P | 0.998 |
| 17:80346988:T:C | S2885P | 0.998 |
| 17:80346989:C:T | S2885F | 0.998 |
| 17:80346993:C:A | N2886K | 0.998 |
| 17:80346993:C:G | N2886K | 0.998 |
| 17:80347686:C:A | N3117K | 0.998 |
| 17:80347686:C:G | N3117K | 0.998 |
| 17:80347838:G:C | R3168P | 0.998 |
| 17:80345593:G:A | G2420R | 0.997 |
| 17:80345593:G:C | G2420R | 0.997 |
| 17:80345910:T:A | N2525K | 0.997 |
| 17:80345910:T:G | N2525K | 0.997 |
| 17:80346658:A:C | K2775Q | 0.997 |
| 17:80346659:A:T | K2775M | 0.997 |
| 17:80346869:A:T | E2845V | 0.997 |
| 17:80347198:G:C | D2955H | 0.997 |
| 17:80347199:A:C | D2955A | 0.997 |
| 17:80347199:A:T | D2955V | 0.997 |
| 17:80347771:T:C | F3146L | 0.997 |
| 17:80347773:C:A | F3146L | 0.997 |
| 17:80347773:C:G | F3146L | 0.997 |
| 17:80347837:C:G | R3168G | 0.997 |
| 17:80345611:A:C | K2426Q | 0.996 |
dbSNP variants (sampled 300 via entrez): RS1000018134 (17:80335882 C>A,T), RS1000022267 (17:80297882 A>T), RS1000042528 (17:80264785 G>A,C), RS1000047113 (17:80262668 C>T), RS1000075528 (17:80269883 A>G), RS1000090323 (17:80259456 G>A), RS1000132848 (17:80370810 G>A), RS1000157061 (17:80342041 A>C,G), RS1000158383 (17:80301662 G>A), RS1000159938 (17:80272558 C>T), RS1000160962 (17:80320201 C>A), RS1000172408 (17:80330139 C>T), RS1000193696 (17:80370551 T>C,G), RS1000215803 (17:80344730 G>A), RS1000219753 (17:80288542 G>A)
Disease associations
OMIM: gene MIM:613768 | disease phenotypes: MIM:607151, MIM:252350, MIM:252900
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Moyamoya disease 2 | Strong | Autosomal dominant |
Mondo (12): Moyamoya disease 2 (MONDO:0011784), Moyamoya disease (MONDO:0016820), nephrocalcinosis (MONDO:0001567), stroke disorder (MONDO:0005098), hemangioma (MONDO:0006500), mucopolysaccharidosis type 3A (MONDO:0009655), anaplastic ependymoma (MONDO:0016700), carotid stenosis (MONDO:0001612), coronary artery disorder (MONDO:0005010), atrial septal aneurysm (MONDO:0020438), patent foramen ovale (MONDO:0020439), atypical coarctation of aorta (MONDO:0015446)
Orphanet (8): Moyamoya disease (Orphanet:2573), Moyamoya angiopathy (Orphanet:477768), Mucopolysaccharidosis type 3 (Orphanet:581), Sanfilippo syndrome type A (Orphanet:79269), Anaplastic ependymoma (Orphanet:251646), Atrial septal aneurysm (Orphanet:99107), Middle aortic syndrome (Orphanet:1456), NON RARE IN EUROPE: Patent foramen ovale (Orphanet:99108)
HPO phenotypes
9 total (13 of 9 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0001009 | Telangiectasia |
| HP:0001249 | Intellectual disability |
| HP:0001250 | Seizure |
| HP:0002119 | Ventriculomegaly |
| HP:0002326 | Transient ischemic attack |
| HP:0011834 | Moyamoya phenomenon |
| HP:0100659 | Abnormal cerebral vascular morphology |
| HP:0001297 | Stroke |
| HP:0001028 | Hemangioma |
| HP:0100546 | Carotid artery stenosis |
| HP:0001655 | Patent foramen ovale |
GWAS associations
13 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000860_1 | Moyamoya disease | 2.000000e-08 |
| GCST001726_7 | Lipoprotein-associated phospholipase A2 activity change in response to statin therapy | 3.000000e-06 |
| GCST003720_36 | Migraine | 5.000000e-10 |
| GCST003986_10 | Migraine | 5.000000e-10 |
| GCST004250_30 | Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL) | 2.000000e-06 |
| GCST005575_27 | Moyamoya disease | 5.000000e-54 |
| GCST005575_28 | Moyamoya disease | 2.000000e-14 |
| GCST005575_29 | Moyamoya disease | 7.000000e-38 |
| GCST005575_30 | Moyamoya disease | 8.000000e-17 |
| GCST005575_31 | Moyamoya disease | 2.000000e-44 |
| GCST010867_18 | Coronary artery disease | 2.000000e-21 |
| GCST011141_20 | Hypertension | 3.000000e-08 |
| GCST90011899_107 | Aspartate aminotransferase levels | 5.000000e-10 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004746 | lipoprotein-associated phospholipase A(2) measurement |
| EFO:0007965 | response to combination chemotherapy |
| EFO:0004736 | aspartate aminotransferase measurement |
MeSH disease descriptors (8)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D016893 | Carotid Stenosis | C10.228.140.300.200.360; C14.907.137.230; C14.907.253.123.360 |
| D003324 | Coronary Artery Disease | C14.280.647.250.260; C14.907.137.126.339; C14.907.585.250.260 |
| D054092 | Foramen Ovale, Patent | C14.240.400.560.375.258; C14.280.400.560.375.258; C16.131.240.400.560.375.258 |
| D006391 | Hemangioma | C04.557.645.375 |
| D009072 | Moyamoya Disease | C10.228.140.300.200.600; C10.228.140.300.510.200.737; C14.907.137.615; C14.907.253.123.620; C14.907.253.560.200.737 |
| D009397 | Nephrocalcinosis | C12.050.351.968.419.590; C12.200.777.419.590; C12.950.419.590; C18.452.174.130.560 |
| D020521 | Stroke | C10.228.140.300.775; C14.907.253.855 |
| C536992 | Moyamoya disease 2 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6067308 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
2 potent at pChembl≥5 of 4 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.22 | Kd | 595.2 | nM | CHEMBL5653589 |
| 6.22 | ED50 | 595.2 | nM | CHEMBL5653589 |
PubChem BioAssay actives
1 with measured affinity, of 4 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149231: Binding affinity to human RNF213 incubated for 45 mins by Kinobead based pull down assay | kd | 0.5952 | uM |
CTD chemical–gene interactions
58 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | increases expression, increases methylation | 4 |
| Tretinoin | decreases expression, increases expression | 3 |
| sodium arsenite | decreases expression | 2 |
| Benzo(a)pyrene | affects methylation, increases expression | 2 |
| Nickel | increases expression | 2 |
| Aflatoxin B1 | decreases methylation, increases expression | 2 |
| GW 506033X | decreases reaction, increases expression | 1 |
| dicrotophos | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| propionaldehyde | increases expression | 1 |
| bisphenol A | increases expression | 1 |
| beta-lapachone | decreases expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| butyraldehyde | decreases expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| nickel sulfate | increases expression | 1 |
| coumarin | increases phosphorylation | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression | 1 |
| epigallocatechin gallate | increases expression, affects cotreatment, decreases expression | 1 |
| 2-(4-morpholinyl)-8-phenyl-4H-1-benzopyran-4-one | decreases reaction, increases expression | 1 |
| entinostat | increases expression | 1 |
| K 7174 | increases expression | 1 |
| abrine | decreases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| Resveratrol | decreases expression, affects cotreatment | 1 |
| Sunitinib | increases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Air Pollutants | decreases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5652273 | Binding | Binding affinity to human RNF213 incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Cellosaurus cell lines
3 cell lines: 2 transformed cell line, 1 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B3TA | HUSTTJi001-A | Induced pluripotent stem cell | Male |
| CVCL_E1K0 | HyCyte hCMEC/D3 KO-hRNF213 | Transformed cell line | Female |
| CVCL_E2Q2 | HyCyte hCMEC/D3 hRNF213_p.R4810K_c.12429G>A | Transformed cell line | Female |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00004727 | PHASE4 | COMPLETED | Antiplatelet Therapy to Prevent Stroke in African Americans |
| NCT00029172 | PHASE4 | COMPLETED | Treatment for Post-Stroke Depression |
| NCT00079638 | PHASE4 | COMPLETED | Comparative Efficacy Evaluation of Lipids When Treated With Niaspan & Statin or Other Lipid-Modifying Therapies-COMPELL |
| NCT00101543 | PHASE4 | COMPLETED | Gait Training For Acute Stroke: Functional Neuromuscular Stimulation (FNS) and Weight Supported Treadmill Training |
| NCT00102869 | PHASE4 | COMPLETED | Dopaminergic Enhancement of Learning and Memory in Aphasia |
| NCT00106886 | PHASE4 | UNKNOWN | HOPE-2 Study (Heart Outcomes Prevention Evaluation-2 Study) |
| NCT00108706 | PHASE4 | UNKNOWN | Acute Candesartan Cilexetil Outcomes Stroke Trial (ACCOST) |
| NCT00126087 | PHASE4 | TERMINATED | Potentiation of Procedural Motor Learning in Health and Disease |
| NCT00149227 | PHASE4 | COMPLETED | Add-on Effects of Valsartan on Morbi- Mortality (KYOTO HEART Study) |
| NCT00153062 | PHASE4 | COMPLETED | PRoFESS - Prevention Regimen For Effectively Avoiding Second Strokes |
| NCT00153946 | PHASE4 | COMPLETED | Edaravone and Argatroban Stroke Therapy Study for Acute Ischemic Stroke |
| NCT00163150 | PHASE4 | COMPLETED | Vasomotor Reactivity In Cerebral Small Vessel Disease And New Approach To Treat Lacunar Stroke |
| NCT00177424 | PHASE4 | TERMINATED | Sertraline for Preventing Post-stroke Depression and Improving Rehabilitation Outcomes |
| NCT00178646 | PHASE4 | COMPLETED | Comparative Efficacy of Three Preparations of Botox-A in Treating Spasticity |
| NCT00196690 | PHASE4 | COMPLETED | Donepezil in Chronic Poststroke Aphasia: a Randomized Controlled Trial |
| NCT00196703 | PHASE4 | UNKNOWN | Memantine and Constraint-Induced Language Therapy in Chronic Poststroke Aphasia:A Randomized Controlled Trial |
| NCT00216411 | PHASE4 | COMPLETED | Effects on Quality of Life Following Dysport Treatment in Post-stroke Spasticity of the Arm |
| NCT00227994 | PHASE4 | COMPLETED | Acetylcholinesterase Inhibitors to Improve Cognitive Function and Overall Rehabilitation After a Stroke |
| NCT00234546 | PHASE4 | COMPLETED | Asian Botulinum Clinical Trial Designed for Early Stroke Spasticity |
| NCT00247533 | PHASE4 | UNKNOWN | Cerebral Artery Stenosis, Coronary Artery Disease and Arrhythmia |
| NCT00263393 | PHASE4 | COMPLETED | Rural Andhra Pradesh Cardiovascular Prevention Study (RAPCAPS) |
| NCT00279149 | PHASE4 | COMPLETED | TRUST-tPA: Therapeutic Trial Evaluating Efficacy of Telemedicine (TELESTROKE) of Patients With Acute Stroke |
| NCT00287508 | PHASE4 | COMPLETED | Emboshield® and Xact® Post Approval Carotid Stent Trial (The EXACT Study) |
| NCT00327418 | PHASE4 | COMPLETED | CARDS Is Designed To Show If Lowering Cholesterol With Atorvastatin In Type 2 Diabetics Without CV Disease Reduces The Risk Of CV Events |
| NCT00327691 | PHASE4 | COMPLETED | A Study to Determine the Degree of Additional Reduction in CV Risk in Lowering LDL Below Minimum Target Levels |
| NCT00396058 | PHASE4 | TERMINATED | The Effect of Methylphenidate on Motor Learning in Stroke Patients |
| NCT00412867 | PHASE4 | COMPLETED | Post-marketing Clinical Study of Alteplase for Acute Ischemic Stroke (Japan Alteplase Clinical Trial Ⅱ:J-ACT Ⅱ) |
| NCT00442325 | PHASE4 | COMPLETED | Benefits Of Using Various Starting Doses Of Atorvastatin On Achievement Of Cholesterol Targets |
| NCT00442845 | PHASE4 | COMPLETED | Establish The Benefits Of Using Various Starting Doses Of Atorvastatin On Achievement Of Cholesterol Targets (ACTFAST) |
| NCT00468923 | PHASE4 | COMPLETED | Heart Outcomes Prevention Evaluation-3 |
| NCT00548223 | PHASE4 | COMPLETED | The Secondary Prevention Trial for Ischemic Stroke With DengzhanShengmai Capsule |
| NCT00552916 | PHASE4 | UNKNOWN | Functional Electrical Stimulation (FES) Assisted Walking: Enhancement of Walking Function After Stroke |
| NCT00559988 | PHASE4 | TERMINATED | Combined Use of BIOTRONIK Home Monitoring and Predefined Anticoagulation to Reduce Stroke Risk |
| NCT00562588 | PHASE4 | COMPLETED | EARLY 3-months Aggrenox Treatment Started Within 24 Hrs of Ischemic Stroke Onset vs. After One Week 100 mg ASA |
| NCT00572767 | PHASE4 | TERMINATED | Evaluation of the Effect of Dextro-Amphetamin Added to Physiotherapy in Patients After Stroke |
| NCT00574457 | PHASE4 | COMPLETED | Improving Cardiovascular Risk Prediction Using Hand Held Carotid Ultrasonography Study |
| NCT00640198 | PHASE4 | COMPLETED | Memantine and Intensive Speech-Language Therapy in Aphasia |
| NCT00724724 | PHASE4 | UNKNOWN | The Effectiveness and Safety of Butylphthalide Soft Capsules in Secondary Prevention of Ischemic Stroke Trial |
| NCT00741585 | PHASE4 | COMPLETED | Prognostic Value of the Circadian Pattern of Ambulatory Blood Pressure for Multiple Risk Assessment |
| NCT00766896 | PHASE4 | COMPLETED | Platelet Hyperreactivity to Aspirin and Stroke |
Related Atlas pages
- Associated diseases: Moyamoya disease 2
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): anaplastic ependymoma, atrial septal aneurysm, atypical coarctation of aorta, carotid stenosis, coronary artery disorder, hemangioma, hypertensive disorder, migraine disorder, Moyamoya disease, Moyamoya disease 2, mucopolysaccharidosis type 3A, nephrocalcinosis, patent foramen ovale, stroke disorder