RNFT1-DT

Summary

RNFT1-DT (RNFT1 divergent transcript, HGNC:51346) is a long non-coding RNA gene on chromosome 17q23.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51346
Approved symbol	RNFT1-DT
Name	RNFT1 divergent transcript
Location	17q23.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000267302
Ensembl biotype	lncRNA
Entrez	101927755
RNAcentral	URS000018F9A0 — lncRNA, 1603 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000586209, ENST00000593015

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000586209 — 4 exons

Exon	Start	End
ENSE00002739431	59995620	59996972
ENSE00002877682	59965096	59965188
ENSE00002920132	59992888	59992979
ENSE00003626650	59966403	59966467

Expression profiles

Bgee: expression breadth ubiquitous, 133 present calls, max score 81.90.

FANTOM5 (CAGE): breadth broad, TPM avg 1.0575 / max 54.2742, expressed in 549 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
162033	0.5625	330
162034	0.3252	157
162032	0.1698	78

Top tissues by expression

136 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
quadriceps femoris	UBERON:0001377	81.90	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.51	gold quality
cerebellar vermis	UBERON:0004720	80.21	gold quality
hindlimb stylopod muscle	UBERON:0004252	79.00	gold quality
muscle of leg	UBERON:0001383	78.95	gold quality
gastrocnemius	UBERON:0001388	78.72	gold quality
skeletal muscle tissue	UBERON:0001134	77.44	gold quality
heart left ventricle	UBERON:0002084	74.11	gold quality
right atrium auricular region	UBERON:0006631	72.12	gold quality
bone marrow	UBERON:0002371	71.99	gold quality
heart	UBERON:0000948	71.77	gold quality
apex of heart	UBERON:0002098	71.52	gold quality
bone marrow cell	CL:0002092	70.09	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	69.87	gold quality
endometrium	UBERON:0001295	69.85	gold quality
stromal cell of endometrium	CL:0002255	69.51	gold quality
colonic epithelium	UBERON:0000397	68.78	silver quality
subcutaneous adipose tissue	UBERON:0002190	68.58	gold quality
liver	UBERON:0002107	68.16	gold quality
mucosa of stomach	UBERON:0001199	68.15	gold quality
thoracic mammary gland	UBERON:0005200	68.15	gold quality
left adrenal gland	UBERON:0001234	68.03	gold quality
left adrenal gland cortex	UBERON:0035825	67.64	gold quality
testis	UBERON:0000473	67.58	gold quality
right adrenal gland cortex	UBERON:0035827	67.55	gold quality
right adrenal gland	UBERON:0001233	67.39	gold quality
adipose tissue	UBERON:0001013	67.33	gold quality
right testis	UBERON:0004534	67.27	gold quality
right lobe of liver	UBERON:0001114	67.25	gold quality
adrenal gland	UBERON:0002369	67.17	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.62

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.