RNPC3-DT

Summary

RNPC3-DT (RNPC3 divergent transcript, HGNC:55855) is a long non-coding RNA gene on chromosome 1p21.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55855
Approved symbol	RNPC3-DT
Name	RNPC3 divergent transcript
Location	1p21.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000224613
Ensembl biotype	lncRNA
Entrez	101928436
RNAcentral	URS0001BBE511 — lncRNA, 1771 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 21 — 21 lncRNA

ENST00000444810, ENST00000447322, ENST00000662345, ENST00000668150, ENST00000836807, ENST00000836808, ENST00000836809, ENST00000836810, ENST00000836811, ENST00000836812, ENST00000836813, ENST00000836814, ENST00000836815, ENST00000836816, ENST00000836817, ENST00000836818, ENST00000836819, ENST00000836820, ENST00000836821, ENST00000836822, ENST00000836823

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000444810 — 6 exons

Exon	Start	End
ENSE00001615024	103418745	103418815
ENSE00001651744	103469342	103469390
ENSE00001688972	103417023	103418224
ENSE00001755291	103432891	103433096
ENSE00001787664	103429287	103429373
ENSE00003860945	103525396	103525511

Expression profiles

Bgee: expression breadth ubiquitous, 105 present calls, max score 75.55.

Top tissues by expression

105 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.55	silver quality
ventricular zone	UBERON:0003053	59.09	silver quality
ganglionic eminence	UBERON:0004023	59.07	gold quality
cortical plate	UBERON:0005343	57.59	silver quality
prefrontal cortex	UBERON:0000451	56.38	gold quality
superior frontal gyrus	UBERON:0002661	54.21	gold quality
leukocyte	CL:0000738	53.77	silver quality
frontal cortex	UBERON:0001870	53.48	gold quality
skeletal muscle tissue	UBERON:0001134	53.35	silver quality
calcaneal tendon	UBERON:0003701	53.05	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	53.05	gold quality
tonsil	UBERON:0002372	53.04	silver quality
Brodmann (1909) area 9	UBERON:0013540	52.67	gold quality
cerebral cortex	UBERON:0000956	52.14	gold quality
anterior cingulate cortex	UBERON:0009835	51.38	gold quality
saliva-secreting gland	UBERON:0001044	50.42	gold quality
duodenum	UBERON:0002114	50.23	gold quality
islet of Langerhans	UBERON:0000006	49.45	gold quality
primary visual cortex	UBERON:0002436	49.37	silver quality
hindlimb stylopod muscle	UBERON:0004252	49.31	gold quality
cortex of kidney	UBERON:0001225	49.07	silver quality
blood	UBERON:0000178	49.06	gold quality
right frontal lobe	UBERON:0002810	48.99	gold quality
pancreas	UBERON:0001264	48.85	gold quality
brain	UBERON:0000955	48.71	gold quality
placenta	UBERON:0001987	48.65	gold quality
body of pancreas	UBERON:0001150	48.37	gold quality
left adrenal gland cortex	UBERON:0035825	47.50	gold quality
muscle of leg	UBERON:0001383	47.45	silver quality
endometrium	UBERON:0001295	47.35	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.10

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.