RPGRIP1L
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Also known as KIAA1005CORS3JBTS7MKS5NPHP8FTMPPP1R134
Summary
RPGRIP1L (RPGRIP1 like, HGNC:29168) is a protein-coding gene on chromosome 16q12.2, encoding Protein fantom (Q68CZ1). Negatively regulates signaling through the G-protein coupled thromboxane A2 receptor (TBXA2R).
The protein encoded by this gene can localize to the basal body-centrosome complex or to primary cilia and centrosomes in ciliated cells. The encoded protein has been found to interact with nephrocystin-4. Defects in this gene are a cause of Joubert syndrome type 7 (JBTS7) and Meckel syndrome type 5 (MKS5).
Source: NCBI Gene 23322 — RefSeq curated summary.
At a glance
- Gene–disease (curated): ciliopathy (Definitive, ClinGen) — +5 more curated relationships
- GWAS associations: 23
- Clinical variants (ClinVar): 2,164 total — 159 pathogenic, 132 likely-pathogenic
- Phenotypes (HPO): 121
- MANE Select transcript:
NM_015272
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:29168 |
| Approved symbol | RPGRIP1L |
| Name | RPGRIP1 like |
| Location | 16q12.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA1005, CORS3, JBTS7, MKS5, NPHP8, FTM, PPP1R134 |
| Ensembl gene | ENSG00000103494 |
| Ensembl biotype | protein_coding |
| OMIM | 610937 |
| Entrez | 23322 |
Gene structure
Transcript identifiers
Ensembl transcripts: 18 — 12 protein_coding, 2 retained_intron, 2 protein_coding_CDS_not_defined, 2 nonsense_mediated_decay
ENST00000262135, ENST00000562230, ENST00000562588, ENST00000563746, ENST00000564374, ENST00000565343, ENST00000566096, ENST00000568009, ENST00000568653, ENST00000569716, ENST00000621565, ENST00000647211, ENST00000679110, ENST00000680193, ENST00000680907, ENST00000681587, ENST00000935860, ENST00000944945
RefSeq mRNA: 6 — MANE Select: NM_015272
NM_001127897, NM_001308334, NM_001328422, NM_001328423, NM_001330538, NM_015272
CCDS: CCDS32447, CCDS45486, CCDS76868, CCDS81980, CCDS86526, CCDS86527
Canonical transcript exons
ENST00000647211 — 27 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000684188 | 53605481 | 53605614 |
| ENSE00000684189 | 53610967 | 53611051 |
| ENSE00000684191 | 53619025 | 53619208 |
| ENSE00000852643 | 53675017 | 53675122 |
| ENSE00000852644 | 53672870 | 53673016 |
| ENSE00000852645 | 53671510 | 53671583 |
| ENSE00001108326 | 53648964 | 53649115 |
| ENSE00001108328 | 53641033 | 53641116 |
| ENSE00001108330 | 53652535 | 53652987 |
| ENSE00001108337 | 53641285 | 53641475 |
| ENSE00001108338 | 53645625 | 53646003 |
| ENSE00001141051 | 53658772 | 53658878 |
| ENSE00001141059 | 53664870 | 53665009 |
| ENSE00001141083 | 53686433 | 53686576 |
| ENSE00001483054 | 53622219 | 53622356 |
| ENSE00001483058 | 53638310 | 53638411 |
| ENSE00001483076 | 53687863 | 53687965 |
| ENSE00001618773 | 53692066 | 53692364 |
| ENSE00001746874 | 53696151 | 53696295 |
| ENSE00002629486 | 53598153 | 53602188 |
| ENSE00002713654 | 53700639 | 53700730 |
| ENSE00003484827 | 53657453 | 53657632 |
| ENSE00003569393 | 53636439 | 53636512 |
| ENSE00003585235 | 53637695 | 53637854 |
| ENSE00003589535 | 53658414 | 53658464 |
| ENSE00003652689 | 53656472 | 53656589 |
| ENSE00003719160 | 53703803 | 53703859 |
Expression profiles
Bgee: expression breadth ubiquitous, 207 present calls, max score 89.39.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 13.7780 / max 588.4982, expressed in 1660 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 157407 | 13.1593 | 1653 |
| 157408 | 0.6186 | 363 |
Top tissues by expression
281 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| bronchial epithelial cell | CL:0002328 | 89.39 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 86.17 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 85.68 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 83.93 | gold quality |
| ventricular zone | UBERON:0003053 | 82.69 | gold quality |
| right testis | UBERON:0004534 | 82.69 | gold quality |
| bronchus | UBERON:0002185 | 82.54 | gold quality |
| left testis | UBERON:0004533 | 82.42 | gold quality |
| testis | UBERON:0000473 | 82.08 | gold quality |
| right uterine tube | UBERON:0001302 | 80.94 | gold quality |
| calcaneal tendon | UBERON:0003701 | 80.52 | gold quality |
| cortical plate | UBERON:0005343 | 80.03 | gold quality |
| stromal cell of endometrium | CL:0002255 | 79.81 | gold quality |
| ganglionic eminence | UBERON:0004023 | 79.52 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 78.89 | gold quality |
| tibia | UBERON:0000979 | 78.76 | gold quality |
| adrenal tissue | UBERON:0018303 | 77.48 | gold quality |
| adenohypophysis | UBERON:0002196 | 77.31 | gold quality |
| pituitary gland | UBERON:0000007 | 76.91 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 76.35 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 75.72 | gold quality |
| prefrontal cortex | UBERON:0000451 | 75.43 | gold quality |
| islet of Langerhans | UBERON:0000006 | 75.37 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 75.29 | gold quality |
| right adrenal gland | UBERON:0001233 | 74.52 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 74.31 | gold quality |
| left adrenal gland | UBERON:0001234 | 74.17 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 73.73 | gold quality |
| embryo | UBERON:0000922 | 73.67 | gold quality |
| right frontal lobe | UBERON:0002810 | 72.89 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 8.18 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
169 targeting RPGRIP1L, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-3924 | 100.00 | 72.09 | 2394 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-513A-5P | 100.00 | 69.77 | 2465 |
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-4803 | 99.98 | 71.99 | 3117 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-34C-5P | 99.97 | 70.45 | 1577 |
| HSA-MIR-449B-5P | 99.97 | 70.26 | 1580 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
Literature-anchored findings (GeneRIF, showing 27)
- Responsible for Joubert syndrome, affecting cilia and basal bodies. (PMID:17558407)
- Mutations can cause the multiorgan phenotypic abnormalities found in cerebello-oculo-renal syndrome or Meckel syndrome. (PMID:17558409)
- T615P mutation represents the most common mutation in the RPGRIP1L gene causing disease in about 8-10% of Joubert syndrome type B patients negative for NPHP1, NPHP6, or AHI1 mutations (PMID:17960139)
- Discuss Fto/Ftm gene expression regulation via CUTL1. (PMID:18256137)
- Mutations in RPGRIP1L: extending the clinical spectrum of ciliopathies. Review. (PMID:18281315)
- RPGRIP1L mutations are largely confined to the cerebello-renal subgroup, while they overall represent a rare cause of JSRD (<2%). (PMID:18565097)
- data suggest that RPGRIP1L suppresses anchorage-independent growth partly through the mitotic checkpoint protein Mad2. (PMID:19410446)
- RPGRIP1L interacts with retinitis pigmentosa GTPase, loss of which causes retinal degeneration. (PMID:19430481)
- Mutations in MKS3 are responsible for the majority of COACH syndrome, with minor contributions from CC2D2A and RPGRIP1L. (PMID:19574260)
- CSPP isoforms require their common C-terminal domain to interact with Nephrocystin 8 (NPHP8/RPGRIP1L) and to form a ternary complex with NPHP8 and NPHP4. (PMID:20519441)
- Insulin was identified as a key factor regulating FTM expression during human preadipocyte differentiation. (PMID:20865646)
- Nek4 interaction with both RPGRIP1 and the RPGRIP1L is involved in cilium assembly. (PMID:21685204)
- Data show that the minor allele (N) of I393N in IQCB1 and the common allele (R) of R744Q in RPGRIP1L were associated with severe disease in XlRP with RPGR mutations. (PMID:21857984)
- Genetic variation may affect severity of disease for X-linked retinitis pigmentosa. (PMID:22183348)
- First evidence of the association between RPGRIP1L gene and susceptibility of Vascular Dementia. (PMID:22425971)
- All Spanish families with Alstrom syndrome were homozygous for 229A allele of RPGRIP1L, with the exception of a p.A229T heterozygous patient. (PMID:22876109)
- KIAA1005 (rs3213758)is associated with single nucleotide polymorphisms in Korean patients, either non-segmental or segmental type. (PMID:23678272)
- Importantly, one Japanese and one Omani families carried compound biallelic mutations in two distinct genes (TMEM67/RPGRIP1L and TMEM138/BBS1, respectively). (PMID:27434533)
- our studies revealed RPGRIP1L as a novel MyoVa-binding protein - the first to be demonstrated to interact with MyoVa at the centrosome - and uncover an unprecedented link between MyoVa and ciliogenesis, providing new perspectives for studies aiming to better understand why defects in MyoVa cause neurological disorders in Griscelli syndrome patients. (PMID:28266547)
- Loss of Rpgrip1l expression is associated with Ciliopathy. (PMID:29650680)
- we didn’t found the significant association between RPGRIP1L and BMI in Chinese women (PMID:29657248)
- T allele in RPGRIP1L gene might increase the risk of vitiligo in a Chinese Han population. (PMID:30539925)
- it might be reasonable to consider RPGRIP1L as an important gene whose variations could be associated with obesity risk factors. (PMID:30597647)
- Biotinylation assays on cell surface proteins not only reinforced the role of RPGRIP1L in desmoglein endocytosis, but also suggested that RPGRIP1L may be more broadly involved in endocytosis. Thus, data obtained from this study advanced our understanding of the biological functions of RPGRIP1L by identifying its role in the cellular endocytic pathway. (PMID:30689641)
- Rpgrip1l controls ciliary gating by ensuring the proper amount of Cep290 at the vertebrate transition zone. (PMID:33625872)
- The Major Ciliary Isoforms of RPGR Build Different Interaction Complexes with INPP5E and RPGRIP1L. (PMID:33808286)
- Identification of Pathogenic Variants in RPGRIP1L with Meckel Syndrome and Preimplantation Genetic Testing in a Chinese Family. (PMID:35233738)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | rpgrip1l | ENSDARG00000051754 |
| mus_musculus | Rpgrip1l | ENSMUSG00000033282 |
| rattus_norvegicus | Rpgrip1l | ENSRNOG00000011829 |
| caenorhabditis_elegans | WBGENE00007490 | |
| caenorhabditis_elegans | WBGENE00206538 |
Paralogs (1): RPGRIP1 (ENSG00000092200)
Protein
Protein identifiers
Protein fantom — Q68CZ1 (reviewed: Q68CZ1)
Alternative names: Nephrocystin-8, RPGR-interacting protein 1-like protein
All UniProt accessions (10): Q68CZ1, A0A087WX34, A0A7P0TB06, H3BPF5, H3BPS4, H3BS47, H3BV03, I3L1B5, I3L2P2, J3QLR9
UniProt curated annotations — full annotation on UniProt →
Function. Negatively regulates signaling through the G-protein coupled thromboxane A2 receptor (TBXA2R). May be involved in mechanisms like programmed cell death, craniofacial development, patterning of the limbs, and formation of the left-right axis. Involved in the organization of apical junctions; the function is proposed to implicate a NPHP1-4-8 module. Does not seem to be strictly required for ciliogenesis. Involved in establishment of planar cell polarity such as in cochlear sensory epithelium and is proposed to implicate stabilization of disheveled proteins. Involved in regulation of proteasomal activity at the primary cilium probably implicating association with PSDM2.
Subunit / interactions. Interacts with NPHP4 and NPHP1; NPHP1, NPHP4 and RPGRIP1L are proposed to form a functional NPHP1-4-8 module localized to cell-cell contacts and the ciliary transition zone; NPHP4 mediates the interaction between NPHP1 and RPGRIP1L. Interacts with IQCB1; the interaction likely requires additional interactors. Interacts with TBXA2R (via C-terminus). Interacts with RPGR. Interacts with NEK4. Interacts with NPHP4, INVS and DVL2; the complex is proposed to be involved in DVL2 stabilization.
Subcellular location. Cytoplasm. Cytoskeleton. Cilium basal body. Cilium axoneme. Microtubule organizing center. Centrosome. Cell junction. Tight junction.
Tissue specificity. Ubiquitously expressed with relatively high level of expression in hypothalamus and islet. During early development, expressed in multiple organs including brain, eye, forelimb and kidney.
Disease relevance. Ciliary dysfunction leads to a broad spectrum of disorders, collectively termed ciliopathies. Overlapping clinical features include retinal degeneration, renal cystic disease, skeletal abnormalities, fibrosis of various organ, and a complex range of anatomical and functional defects of the central and peripheral nervous system. The ciliopathy range of diseases includes Meckel-Gruber syndrome, Bardet-Biedl syndrome, Joubert syndrome, nephronophtisis, Senior-Loken syndrome, and Jeune asphyxiating thoracic dystrophy among others. Single-locus allelism is insufficient to explain the variable penetrance and expressivity of such disorders, leading to the suggestion that variations across multiple sites of the ciliary proteome, including RPGRIP1L, influence the clinical outcome. Joubert syndrome 7 (JBTS7) [MIM:611560] A disorder presenting with cerebellar ataxia, oculomotor apraxia, hypotonia, neonatal breathing abnormalities and psychomotor delay. Neuroradiologically, it is characterized by cerebellar vermian hypoplasia/aplasia, thickened and reoriented superior cerebellar peduncles, and an abnormally large interpeduncular fossa, giving the appearance of a molar tooth on transaxial slices (molar tooth sign). Additional variable features include retinal dystrophy and renal disease. The disease is caused by variants affecting the gene represented in this entry. Meckel syndrome 5 (MKS5) [MIM:611561] A disorder characterized by a combination of renal cysts and variably associated features including developmental anomalies of the central nervous system (typically encephalocele), hepatic ductal dysplasia and cysts, and polydactyly. The disease is caused by variants affecting the gene represented in this entry. COACH syndrome 3 (COACH3) [MIM:619113] A form of COACH syndrome, a disorder characterized by cerebellar vermis hypoplasia, developmental delay, impaired intellectual development, ataxia, and hepatic fibrosis. Patients present the molar tooth sign, a midbrain-hindbrain malformation pathognomonic for Joubert syndrome and related disorders. Other features, such as coloboma and renal cysts, may be variable. COACH3 inheritance is autosomal recessive. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the RPGRIP1 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q68CZ1-1 | 1 | yes |
| Q68CZ1-2 | 2 |
RefSeq proteins (6): NP_001121369, NP_001295263, NP_001315351, NP_001315352, NP_001317467, NP_056087* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000008 | C2_dom | Domain |
| IPR021656 | C2-C2_1 | Domain |
| IPR031139 | RPGRIP1_fam | Family |
| IPR035892 | C2_domain_sf | Homologous_superfamily |
| IPR041091 | RPGRIP1_C | Domain |
Pfam: PF00168, PF11618, PF18111
UniProt features (47 total): sequence variant 19, strand 9, sequence conflict 5, helix 3, coiled-coil region 3, domain 2, splice variant 2, compositionally biased region 2, chain 1, region of interest 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2YRB | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q68CZ1-F1 | 71.02 | 0.29 |
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-5610787 | Hedgehog ‘off’ state |
| R-HSA-5620912 | Anchoring of the basal body to the plasma membrane |
MSigDB gene sets: 493 (showing top):
GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM, GOBP_HINDBRAIN_DEVELOPMENT, GOBP_HEPATICOBILIARY_SYSTEM_DEVELOPMENT, GOBP_EMBRYO_DEVELOPMENT_ENDING_IN_BIRTH_OR_EGG_HATCHING, AAGCAAT_MIR137, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_METENCEPHALON_DEVELOPMENT, GOBP_ESTABLISHMENT_OR_MAINTENANCE_OF_CELL_POLARITY, GOBP_HINDLIMB_MORPHOGENESIS, GOBP_PROTEIN_LOCALIZATION_TO_CILIUM, GOBP_NEUROGENESIS, GOBP_NEURAL_TUBE_DEVELOPMENT, GOBP_NEURAL_RETINA_DEVELOPMENT, GOBP_FORELIMB_MORPHOGENESIS, GOBP_VENTRICULAR_SYSTEM_DEVELOPMENT
GO Biological Process (27): in utero embryonic development (GO:0001701), establishment of planar polarity (GO:0001736), kidney development (GO:0001822), liver development (GO:0001889), establishment or maintenance of cell polarity (GO:0007163), determination of left/right symmetry (GO:0007368), regulation of smoothened signaling pathway (GO:0008589), neural tube patterning (GO:0021532), cerebellum development (GO:0021549), lateral ventricle development (GO:0021670), olfactory bulb development (GO:0021772), corpus callosum development (GO:0022038), embryonic forelimb morphogenesis (GO:0035115), embryonic hindlimb morphogenesis (GO:0035116), nose development (GO:0043584), negative regulation of G protein-coupled receptor signaling pathway (GO:0045744), retinal rod cell development (GO:0046548), pericardium development (GO:0060039), cochlea development (GO:0090102), non-motile cilium assembly (GO:1905515), brain development (GO:0007420), regulation of signal transduction (GO:0009966), telencephalon development (GO:0021537), limb morphogenesis (GO:0035108), camera-type eye development (GO:0043010), cilium assembly (GO:0060271), head development (GO:0060322)
GO Molecular Function (2): thromboxane A2 receptor binding (GO:0031870), protein binding (GO:0005515)
GO Cellular Component (15): cytoplasm (GO:0005737), centrosome (GO:0005813), cytosol (GO:0005829), plasma membrane (GO:0005886), cell-cell junction (GO:0005911), bicellular tight junction (GO:0005923), cilium (GO:0005929), axoneme (GO:0005930), nuclear speck (GO:0016607), photoreceptor connecting cilium (GO:0032391), ciliary transition zone (GO:0035869), ciliary basal body (GO:0036064), cytoskeleton (GO:0005856), cell projection (GO:0042995), anchoring junction (GO:0070161)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Signaling by Hedgehog | 1 |
| Assembly of the 9+0 primary cilium | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| anatomical structure development | 5 |
| cellular anatomical structure | 5 |
| telencephalon development | 2 |
| embryonic limb morphogenesis | 2 |
| microtubule organizing center | 2 |
| cilium | 2 |
| chordate embryonic development | 1 |
| morphogenesis of a polarized epithelium | 1 |
| establishment of tissue polarity | 1 |
| animal organ development | 1 |
| renal system development | 1 |
| gland development | 1 |
| hepaticobiliary system development | 1 |
| cellular process | 1 |
| determination of bilateral symmetry | 1 |
| left/right pattern formation | 1 |
| smoothened signaling pathway | 1 |
| regulation of signal transduction | 1 |
| regionalization | 1 |
| neural tube development | 1 |
| metencephalon development | 1 |
| ventricular system development | 1 |
| olfactory lobe development | 1 |
| forelimb morphogenesis | 1 |
| hindlimb morphogenesis | 1 |
| sensory organ development | 1 |
| respiratory system development | 1 |
| G protein-coupled receptor signaling pathway | 1 |
| regulation of G protein-coupled receptor signaling pathway | 1 |
| negative regulation of signal transduction | 1 |
| eye photoreceptor cell development | 1 |
| retinal rod cell differentiation | 1 |
| heart development | 1 |
| epithelium development | 1 |
| inner ear development | 1 |
| cilium assembly | 1 |
| prostanoid receptor binding | 1 |
| binding | 1 |
| intracellular anatomical structure | 1 |
| centriole | 1 |
Protein interactions and networks
STRING
1720 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RPGRIP1L | NPHP4 | O75161 | 998 |
| RPGRIP1L | NPHP1 | O15259 | 993 |
| RPGRIP1L | CEP290 | O15078 | 977 |
| RPGRIP1L | TMEM67 | Q5HYA8 | 970 |
| RPGRIP1L | CC2D2A | Q9P2K1 | 969 |
| RPGRIP1L | TMEM216 | Q9P0N5 | 957 |
| RPGRIP1L | RPGR | Q92834 | 943 |
| RPGRIP1L | NPHP3 | Q7Z494 | 940 |
| RPGRIP1L | AHI1 | Q8N157 | 939 |
| RPGRIP1L | PSMD2 | Q13200 | 916 |
| RPGRIP1L | ARL13B | Q3SXY8 | 899 |
| RPGRIP1L | MKS1 | Q9NXB0 | 892 |
| RPGRIP1L | TMEM231 | Q9H6L2 | 879 |
| RPGRIP1L | B9D1 | Q9UPM9 | 868 |
| RPGRIP1L | TMEM237 | Q96Q45 | 866 |
IntAct
68 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| NPHP1 | NPHP4 | psi-mi:“MI:2364”(proximity) | 0.930 |
| NPHP1 | NPHP4 | psi-mi:“MI:0914”(association) | 0.930 |
| RPGRIP1L | NPHP4 | psi-mi:“MI:0915”(physical association) | 0.760 |
| RPGR | NPHP4 | psi-mi:“MI:2364”(proximity) | 0.730 |
| RPGR | NPHP1 | psi-mi:“MI:0914”(association) | 0.560 |
| Rpgr | RPGRIP1L | psi-mi:“MI:0915”(physical association) | 0.510 |
| RPGRIP1L | Rpgr | psi-mi:“MI:0915”(physical association) | 0.510 |
| RPGRIP1L | PPP1CA | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| PCM1 | CEP162 | psi-mi:“MI:0914”(association) | 0.420 |
| RPGRIP1L | CCP110 | psi-mi:“MI:0914”(association) | 0.420 |
| CEP162 | CCP110 | psi-mi:“MI:2364”(proximity) | 0.420 |
| RPGRIP1L | LAS1L | psi-mi:“MI:0915”(physical association) | 0.400 |
| RPGRIP1L | KIF2A | psi-mi:“MI:0914”(association) | 0.350 |
| SPATA7 | CFAP410 | psi-mi:“MI:0914”(association) | 0.350 |
| NEK4 | E2F8 | psi-mi:“MI:0914”(association) | 0.350 |
| NEK4 | QSOX1 | psi-mi:“MI:0914”(association) | 0.350 |
| RPGR | NPHP1 | psi-mi:“MI:0914”(association) | 0.350 |
| ZSCAN29 | GSDME | psi-mi:“MI:0914”(association) | 0.350 |
| M | psi-mi:“MI:0914”(association) | 0.350 | |
| FTL | SH3PXD2B | psi-mi:“MI:0914”(association) | 0.350 |
| PNMA2 | TARS3 | psi-mi:“MI:0914”(association) | 0.350 |
| TRIM52 | MEIOC | psi-mi:“MI:0914”(association) | 0.350 |
| INSYN1 | CCDC85C | psi-mi:“MI:0914”(association) | 0.350 |
| WHAMMP3 | EXOC5 | psi-mi:“MI:0914”(association) | 0.350 |
| SPMAP2 | PRICKLE3 | psi-mi:“MI:0914”(association) | 0.350 |
| WHAMMP3 | CCDC22 | psi-mi:“MI:0914”(association) | 0.350 |
| TTC8 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (239): RPGRIP1L (Affinity Capture-RNA), RPGRIP1L (Affinity Capture-RNA), RPGRIP1L (Affinity Capture-Western), CCP110 (Affinity Capture-Western), CEP170 (Affinity Capture-Western), CEP192 (Affinity Capture-Western), KIAA0753 (Affinity Capture-Western), OFD1 (Affinity Capture-Western), PCM1 (Affinity Capture-Western), PCNT (Affinity Capture-MS), CSPP1 (Affinity Capture-MS), MPRIP (Affinity Capture-MS), PCM1 (Affinity Capture-MS), CEP170B (Affinity Capture-MS), IPO7 (Affinity Capture-MS)
ESM2 similar proteins: A0JN62, A2RT67, A2RUS2, A2VDU2, A4IFB6, A4IIM3, A7MBL8, B1H2P5, B4F779, O94967, P48553, Q08CL8, Q0VEJ0, Q14161, Q15650, Q3TLI0, Q4R350, Q5RAQ5, Q5RCP7, Q5RDV5, Q5TKA1, Q5XIA4, Q5ZIW2, Q5ZJK1, Q68CZ1, Q6AYF1, Q6QD73, Q7TSG1, Q7ZYH1, Q8BH15, Q8BIK4, Q8BKH7, Q8C735, Q8CG73, Q8CGF6, Q8IWR0, Q8IZQ1, Q8N6S4, Q8N960, Q8NEU8
Diamond homologs: A0A096LPI5, A6NIU2, A6NJG6, F2Z398, P0DTE4, P51957, Q09FC8, Q5H9K5, Q5T7P6, Q68CZ1, Q6B4Z3, Q6UX73, Q86U02, Q8IV13, Q8N7M2, Q8N9N2, Q8NDZ0, Q8NEM8, Q8TDM0, Q92918, Q96J02, Q96MD7, Q9BUA6, Q9NXG0, Q8N2A0, A7MB40, P78312, Q8CGI1, A2RRD8, A6NHJ4, P0CJ79, P17035, P51522, Q08AN1, Q0VGE8, Q3MIS6, Q5HY98, Q5R8X1, Q5RER9, Q5VIY5
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| RPGRIP1L | down-regulates | RELA | demethylation |
| RPGRIP1L | down-regulates | NfKb-p65/p50 | demethylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 61 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Anchoring of the basal body to the plasma membrane | 10 | 35.3× | 3e-11 |
| Loss of Nlp from mitotic centrosomes | 7 | 34.7× | 8e-08 |
| Loss of proteins required for interphase microtubule organization from the centrosome | 7 | 34.7× | 8e-08 |
| AURKA Activation by TPX2 | 7 | 33.3× | 8e-08 |
| Recruitment of mitotic centrosome proteins and complexes | 7 | 29.7× | 1e-07 |
| Regulation of PLK1 Activity at G2/M Transition | 7 | 27.8× | 2e-07 |
| Recruitment of NuMA to mitotic centrosomes | 7 | 25.5× | 3e-07 |
| Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal | 5 | 18.2× | 2e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| cilium assembly | 7 | 9.5× | 3e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
2164 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 159 |
| Likely pathogenic | 132 |
| Uncertain significance | 800 |
| Likely benign | 824 |
| Benign | 50 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1032670 | NM_015272.5(RPGRIP1L):c.2581_2582insG (p.Leu861fs) | Pathogenic |
| 1066451 | NC_000016.9:g.(?53639383)(53698931_?)del | Pathogenic |
| 1068 | NM_015272.5(RPGRIP1L):c.697A>T (p.Lys233Ter) | Pathogenic |
| 1068465 | NM_015272.5(RPGRIP1L):c.676G>T (p.Glu226Ter) | Pathogenic |
| 1068561 | NM_015272.5(RPGRIP1L):c.2711del (p.Lys904fs) | Pathogenic |
| 1068738 | NM_015272.5(RPGRIP1L):c.2582dup (p.Ser862fs) | Pathogenic |
| 1069 | NM_015272.5(RPGRIP1L):c.1843A>C (p.Thr615Pro) | Pathogenic |
| 1069111 | NM_015272.5(RPGRIP1L):c.663_664dup (p.Ile222fs) | Pathogenic |
| 1069496 | NM_015272.5(RPGRIP1L):c.496G>T (p.Glu166Ter) | Pathogenic |
| 1070 | NM_015272.5(RPGRIP1L):c.757C>T (p.Gln253Ter) | Pathogenic |
| 1070007 | NM_015272.5(RPGRIP1L):c.1225A>T (p.Arg409Ter) | Pathogenic |
| 1070105 | NM_015272.5(RPGRIP1L):c.1252G>T (p.Glu418Ter) | Pathogenic |
| 1071499 | NM_015272.5(RPGRIP1L):c.2397C>A (p.Cys799Ter) | Pathogenic |
| 1072 | NM_015272.5(RPGRIP1L):c.394A>T (p.Arg132Ter) | Pathogenic |
| 1072338 | NM_015272.5(RPGRIP1L):c.1920dup (p.Glu641Ter) | Pathogenic |
| 1073 | NM_015272.5(RPGRIP1L):c.1033C>T (p.Gln345Ter) | Pathogenic |
| 1073461 | NM_015272.5(RPGRIP1L):c.149del (p.Leu50fs) | Pathogenic |
| 1074159 | NM_015272.5(RPGRIP1L):c.421C>T (p.Gln141Ter) | Pathogenic |
| 1075586 | NM_015272.5(RPGRIP1L):c.528del (p.Gly177fs) | Pathogenic |
| 1076236 | NC_000016.9:g.(?53729213)(53730217_?)del | Pathogenic |
| 1076237 | NC_000016.9:g.(?53652917)(53656288_?)del | Pathogenic |
| 1076238 | NC_000016.9:g.(?53720335)(53721887_?)del | Pathogenic |
| 1077 | NM_015272.5(RPGRIP1L):c.2269del (p.Thr757fs) | Pathogenic |
| 1080 | NM_015272.5(RPGRIP1L):c.1975T>C (p.Ser659Pro) | Pathogenic |
| 1185042 | NM_015272.5(RPGRIP1L):c.427C>T (p.Gln143Ter) | Pathogenic |
| 1323533 | NM_015272.5(RPGRIP1L):c.3545del (p.Pro1182fs) | Pathogenic |
| 1323535 | NM_015272.5(RPGRIP1L):c.2921del (p.Lys974fs) | Pathogenic |
| 1370102 | NC_000016.9:g.(?53698772)(53734645_?)del | Pathogenic |
| 1384547 | NM_015272.5(RPGRIP1L):c.988C>T (p.Gln330Ter) | Pathogenic |
| 1391379 | NM_015272.5(RPGRIP1L):c.3605_3608del (p.Asn1202fs) | Pathogenic |
SpliceAI
4756 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 16:53602040:A:AC | donor_gain | 1.0000 |
| 16:53602041:C:CC | donor_gain | 1.0000 |
| 16:53602189:C:CC | acceptor_gain | 1.0000 |
| 16:53605513:T:A | donor_gain | 1.0000 |
| 16:53605610:GAAGG:G | acceptor_gain | 1.0000 |
| 16:53605612:AGG:A | acceptor_gain | 1.0000 |
| 16:53605613:GG:G | acceptor_gain | 1.0000 |
| 16:53605614:GC:G | acceptor_loss | 1.0000 |
| 16:53605615:C:CA | acceptor_loss | 1.0000 |
| 16:53605615:C:CC | acceptor_gain | 1.0000 |
| 16:53619023:A:AC | donor_gain | 1.0000 |
| 16:53619023:A:T | donor_loss | 1.0000 |
| 16:53619023:AC:A | donor_gain | 1.0000 |
| 16:53619024:C:CC | donor_gain | 1.0000 |
| 16:53619024:CC:C | donor_gain | 1.0000 |
| 16:53619024:CCA:C | donor_gain | 1.0000 |
| 16:53619024:CCATT:C | donor_gain | 1.0000 |
| 16:53619204:GATGG:G | acceptor_gain | 1.0000 |
| 16:53619205:ATGG:A | acceptor_gain | 1.0000 |
| 16:53619206:TGG:T | acceptor_gain | 1.0000 |
| 16:53619207:GG:G | acceptor_gain | 1.0000 |
| 16:53619208:GC:G | acceptor_loss | 1.0000 |
| 16:53619208:GCTGT:G | acceptor_gain | 1.0000 |
| 16:53619209:C:CC | acceptor_gain | 1.0000 |
| 16:53619211:G:C | acceptor_gain | 1.0000 |
| 16:53619212:T:TC | acceptor_gain | 1.0000 |
| 16:53619213:T:C | acceptor_gain | 1.0000 |
| 16:53619213:T:TC | acceptor_gain | 1.0000 |
| 16:53619221:C:CT | acceptor_gain | 1.0000 |
| 16:53619222:A:T | acceptor_gain | 1.0000 |
AlphaMissense
8773 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 16:53641413:A:G | W916R | 0.999 |
| 16:53641413:A:T | W916R | 0.999 |
| 16:53657487:A:G | L516P | 0.998 |
| 16:53657508:A:G | L509P | 0.998 |
| 16:53692341:A:G | L85P | 0.998 |
| 16:53645741:A:G | L856P | 0.997 |
| 16:53692344:C:G | R84P | 0.997 |
| 16:53692360:C:G | A79P | 0.997 |
| 16:53605606:A:G | F1237S | 0.996 |
| 16:53641411:C:A | W916C | 0.996 |
| 16:53641411:C:G | W916C | 0.996 |
| 16:53692251:A:G | L115P | 0.996 |
| 16:53602149:A:G | L1292P | 0.995 |
| 16:53619126:A:G | L1172P | 0.995 |
| 16:53619174:A:G | L1156P | 0.995 |
| 16:53645714:A:T | V865D | 0.995 |
| 16:53692350:A:G | L82S | 0.995 |
| 16:53641412:C:G | W916S | 0.994 |
| 16:53652969:G:T | A573D | 0.994 |
| 16:53657527:C:G | A503P | 0.994 |
| 16:53692230:A:G | L122P | 0.994 |
| 16:53619122:A:C | F1173L | 0.993 |
| 16:53619122:A:T | F1173L | 0.993 |
| 16:53619124:A:G | F1173L | 0.993 |
| 16:53645864:A:T | V815D | 0.993 |
| 16:53645933:A:G | L792P | 0.993 |
| 16:53664938:A:G | L392P | 0.993 |
| 16:53671549:C:G | R355P | 0.993 |
| 16:53692352:C:A | K81N | 0.993 |
| 16:53692352:C:G | K81N | 0.993 |
dbSNP variants (sampled 300 via entrez): RS1000004866 (16:53702021 T>C), RS1000015985 (16:53659580 G>A,T), RS1000048595 (16:53655919 A>G), RS1000075018 (16:53700486 A>C), RS1000078215 (16:53610087 A>G), RS1000174022 (16:53694765 G>A,C), RS1000227750 (16:53694563 C>T), RS1000233828 (16:53647137 A>G,T), RS1000247094 (16:53671032 G>A), RS1000282366 (16:53650435 T>A), RS1000324090 (16:53644430 A>G), RS1000332868 (16:53636356 T>G), RS1000347369 (16:53671269 T>C,G), RS1000362900 (16:53624911 G>A), RS1000389519 (16:53644128 A>C)
Disease associations
OMIM: gene MIM:610937 | disease phenotypes: MIM:213300, MIM:249000, MIM:611560, MIM:611561, MIM:619113, MIM:216360, MIM:256100, MIM:209900, MIM:204000
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Meckel syndrome, type 5 | Definitive | Autosomal recessive |
| Joubert syndrome 7 | Strong | Autosomal recessive |
| ciliopathy | Strong | Autosomal recessive |
| COACH syndrome 1 | Supportive | Autosomal recessive |
| Joubert syndrome with renal defect | Supportive | Autosomal recessive |
| Meckel syndrome | Supportive | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| ciliopathy | Definitive | AR |
Mondo (18): Joubert syndrome (MONDO:0018772), Meckel syndrome (MONDO:0018921), Joubert syndrome 7 (MONDO:0012694), Meckel syndrome, type 5 (MONDO:0012695), COACH syndrome 3 (MONDO:0030862), COACH syndrome 1 (MONDO:0800103), Joubert syndrome and related disorders (MONDO:0015369), nephronophthisis (MONDO:0019005), focal segmental glomerulosclerosis (MONDO:0100313), kidney disorder (MONDO:0005240), optic atrophy (MONDO:0003608), Bardet-Biedl syndrome (MONDO:0015229), Leber congenital amaurosis (MONDO:0018998), inherited retinal dystrophy (MONDO:0019118), ciliopathy (MONDO:0005308)
Orphanet (10): Isolated Joubert syndrome (Orphanet:475), Meckel syndrome (Orphanet:564), Joubert syndrome with renal defect (Orphanet:220497), Joubert syndrome with hepatic defect (Orphanet:1454), Joubert syndrome and related disorders (Orphanet:140874), Nephronophthisis (Orphanet:655), Bardet-Biedl syndrome (Orphanet:110), Leber congenital amaurosis (Orphanet:65), OBSOLETE: Inherited retinal disorder (Orphanet:71862), Ciliopathy (Orphanet:363250)
HPO phenotypes
121 total (30 of 121 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000003 | Multicystic kidney dysplasia |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000023 | Inguinal hernia |
| HP:0000028 | Cryptorchidism |
| HP:0000037 | Male pseudohermaphroditism |
| HP:0000062 | Ambiguous genitalia |
| HP:0000068 | Urethral atresia |
| HP:0000073 | Ureteral duplication |
| HP:0000083 | Renal insufficiency |
| HP:0000090 | Nephronophthisis |
| HP:0000092 | Renal tubular atrophy |
| HP:0000107 | Renal cyst |
| HP:0000112 | Nephropathy |
| HP:0000175 | Cleft palate |
| HP:0000202 | Orofacial cleft |
| HP:0000204 | Cleft upper lip |
| HP:0000221 | Furrowed tongue |
| HP:0000238 | Hydrocephalus |
| HP:0000252 | Microcephaly |
| HP:0000256 | Macrocephaly |
| HP:0000276 | Long face |
| HP:0000293 | Full cheeks |
| HP:0000316 | Hypertelorism |
| HP:0000340 | Sloping forehead |
| HP:0000347 | Micrognathia |
| HP:0000358 | Posteriorly rotated ears |
| HP:0000369 | Low-set ears |
| HP:0000426 | Prominent nasal bridge |
| HP:0000457 | Depressed nasal ridge |
| HP:0000463 | Anteverted nares |
GWAS associations
23 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000961_23 | Bipolar disorder | 2.000000e-06 |
| GCST001992_1 | Vitiligo (non-segmental) | 6.000000e-11 |
| GCST003476_1 | Eyebrow thickness | 3.000000e-06 |
| GCST004766_20 | Triglyceride change in response to fenofibrate in statin-treated type 2 diabetes | 2.000000e-07 |
| GCST006190_40 | Diastolic blood pressure x smoking status (ever vs never) interaction (2df test) | 2.000000e-10 |
| GCST006190_66 | Diastolic blood pressure x smoking status (ever vs never) interaction (2df test) | 4.000000e-08 |
| GCST006192_13 | Systolic blood pressure x smoking status (ever vs never) interaction (2df test) | 4.000000e-20 |
| GCST006192_27 | Systolic blood pressure x smoking status (ever vs never) interaction (2df test) | 1.000000e-13 |
| GCST006193_23 | Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test) | 3.000000e-11 |
| GCST006193_64 | Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test) | 6.000000e-09 |
| GCST006195_5 | Systolic blood pressure x smoking status (current vs non-current) interaction (2df test) | 6.000000e-14 |
| GCST006195_53 | Systolic blood pressure x smoking status (current vs non-current) interaction (2df test) | 1.000000e-20 |
| GCST008129_87 | Body mass index | 5.000000e-11 |
| GCST008152_151 | Weight | 6.000000e-06 |
| GCST008369_24 | Plasma anti-thyroglobulin levels | 5.000000e-06 |
| GCST009371_9 | Bipolar disorder or body mass index | 6.000000e-09 |
| GCST009464_2 | Facial morphology | 7.000000e-09 |
| GCST009464_21 | Facial morphology | 4.000000e-08 |
| GCST009464_3 | Facial morphology | 3.000000e-09 |
| GCST90011900_125 | Serum alkaline phosphatase levels | 8.000000e-11 |
| GCST90016670_7 | Kidney volume | 2.000000e-09 |
| GCST90016671_5 | Visceral adipose tissue volume | 3.000000e-08 |
| GCST90016672_1 | Abdominal subcutaneous adipose tissue volume | 2.000000e-21 |
EFO canonical traits (7, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007681 | triglyceride change measurement |
| EFO:0006336 | diastolic blood pressure |
| EFO:0006527 | smoking status measurement |
| EFO:0006335 | systolic blood pressure |
| EFO:0004340 | body mass index |
| EFO:0004338 | body weight |
| EFO:0004533 | alkaline phosphatase measurement |
MeSH disease descriptors (10)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D020788 | Bardet-Biedl Syndrome | C10.228.140.617.200; C11.270.684.624; C16.131.077.245.125; C16.320.184.125 |
| D005923 | Glomerulosclerosis, Focal Segmental | C12.050.351.968.419.570.363.640; C12.200.777.419.570.363.660; C12.950.419.570.363.640 |
| D007674 | Kidney Diseases | C12.050.351.968.419; C12.200.777.419; C12.950.419 |
| D057130 | Leber Congenital Amaurosis | C11.270.516; C11.768.364 |
| D008831 | Microcephaly | C05.660.207.620; C10.500.507.400.500; C16.131.621.207.620; C16.131.666.507.400.500 |
| D009896 | Optic Atrophy | C10.292.700.225; C11.640.451 |
| D058499 | Retinal Dystrophies | C11.768.585.658 |
| C566916 | Joubert Syndrome 7 (supp.) | |
| C536296 | Joubert syndrome 4 (supp.) | |
| C566915 | Meckel Syndrome, Type 5 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
38 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, decreases expression | 3 |
| Air Pollutants | affects cotreatment, increases abundance, increases expression | 2 |
| Tetrachlorodibenzodioxin | decreases expression | 2 |
| Tobacco Smoke Pollution | decreases expression, increases expression | 2 |
| Valproic Acid | affects expression, decreases expression | 2 |
| Cyclosporine | affects expression, decreases expression | 2 |
| Aflatoxin B1 | affects expression, decreases methylation | 2 |
| aristolochic acid I | decreases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | affects cotreatment, increases expression, increases abundance | 1 |
| bisphenol A | decreases methylation | 1 |
| beta-lapachone | increases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| aflatoxin B2 | increases methylation | 1 |
| methacrylaldehyde | affects cotreatment, increases expression, increases abundance | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| abrine | decreases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Sunitinib | increases expression | 1 |
| Acrolein | affects cotreatment, increases expression, increases abundance | 1 |
| Doxorubicin | decreases expression | 1 |
| Latex | decreases expression | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
| Ouabain | decreases expression | 1 |
| Ozone | increases expression, increases abundance, affects cotreatment | 1 |
| Plant Extracts | affects cotreatment, increases expression | 1 |
| Quercetin | increases expression | 1 |
Clinical trials (associated diseases)
301 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT01129557 | PHASE4 | TERMINATED | Aldosterone Breakthrough During Diovan, Tekturna, and Combination Therapy in Patients With Proteinuric Kidney Disease |
| NCT02399462 | PHASE4 | WITHDRAWN | Acthar for Treatment of Post-transplant FSGS |
| NCT02585804 | PHASE4 | COMPLETED | Treating to Reduce Albuminuria and Normalize Hemodynamic Function in Focal ScLerosis With dApagliflozin Trial Effects |
| NCT02633046 | PHASE4 | COMPLETED | Acthar for Treatment-Resistant or Treatment-Intolerant Proteinuria |
| NCT07219121 | PHASE4 | RECRUITING | Sparsentan in Posttransplant Immunoglobulin A Nephropathy or Focal Segmental Glomerulosclerosis |
| NCT00067990 | PHASE4 | COMPLETED | Angiotensin II Blockade for Chronic Allograft Nephropathy |
| NCT00117078 | PHASE4 | COMPLETED | Aranesp® Monthly Preference Study - 2 |
| NCT00117130 | PHASE4 | COMPLETED | Study to Evaluate Effectiveness of Aranesp® |
| NCT00132431 | PHASE4 | COMPLETED | START: Sensipar Treatment Algorithm to Reach K/DOQI Targets in Chronic Kidney Disease Subjects With Secondary Hyperparathyroidism |
| NCT00140985 | PHASE4 | COMPLETED | Antiproteinuric Efficacy of Losartan Potassium in Patients With Non-Diabetic Proteinuric Renal Diseases (0954-213) |
| NCT00246129 | PHASE4 | COMPLETED | CamTac Trial:Campath-Tacrolimus vs IL2R MoAb/Tacrolimus/MMF in Renal Transplantation |
| NCT00275535 | PHASE4 | COMPLETED | The Comparison of Tacrolimus and Sirolimus Immunosuppression Based Drug Regimens in Kidney Transplant Recipients |
| NCT00282217 | PHASE4 | COMPLETED | Study Evaluating Sirolimus in the Treatment of Kidney Transplant |
| NCT00289614 | PHASE4 | COMPLETED | Patients With Renal Impairment and Diabetes Undergoing Computed Tomography (CT) |
| NCT00290069 | PHASE4 | UNKNOWN | Renal Function Optimization With Mycophenolate Mofetil (MMF) Immunosuppressor Regimes (ALHAMBRA) |
| NCT00338468 | PHASE4 | TERMINATED | A Study to Assess Disability in Anemic Elderly Patients With Kidney Disease Receiving PROCRIT (Epoetin Alfa) |
| NCT00368901 | PHASE4 | COMPLETED | STAAR-2 Clinical Study |
| NCT00369733 | PHASE4 | COMPLETED | STAAR-3 Clinical Study |
| NCT00369772 | PHASE4 | COMPLETED | STAAR-1 Clinical Study |
| NCT00379899 | PHASE4 | COMPLETED | ADVANCE: Study to Evaluate Cinacalcet Plus Low Dose Vitamin D on Vascular Calcification in Subjects With Chronic Kidney Disease Receiving Hemodialysis |
| NCT00443508 | PHASE4 | UNKNOWN | Reduction or Discontinuation of CNI’s With Conversion to Everolimus-Based Immunosuppresion |
| NCT00452478 | PHASE4 | TERMINATED | Conversion From Standard Phosphate Binder Therapy to Fosrenol® (Lanthanum Carbonate) in Chronic Kidney Disease Stage 5 |
| NCT00492518 | PHASE4 | COMPLETED | Acetylcysteine, Theophylline, and a Combination of Both in the Prophylaxis of Contrast-Induced Nephropathy |
| NCT00505102 | PHASE4 | UNKNOWN | Safe Renal Function In Long Term Heart Transplanted Patients |
| NCT00526331 | PHASE4 | COMPLETED | Evaluation of Arterial Pressure Based Cardiac Output for Goal-Directed Perioperative Therapy |
| NCT00688480 | PHASE4 | COMPLETED | Do Xanthine Oxidase Inhibitors Reduce Both Left Ventricular Hypertrophy and Endothelial Dysfunction in Cardiovascular Patients With Renal Dysfunction? |
| NCT00863707 | PHASE4 | COMPLETED | A Study of the Safety and Tolerance of Regadenoson in Subjects With Renal Impairment |
| NCT01101698 | PHASE4 | UNKNOWN | Vitamin K2 and Vessel Calcification in Chronic Kidney Disease Patients |
| NCT01150201 | PHASE4 | COMPLETED | Aliskiren Combined With Losartan in Proteinuric, Non-diabetic Chronic Kidney Disease |
| NCT01155141 | PHASE4 | COMPLETED | Idiopathic Focal Segmental Glomerulosclerosis (FSGS) and Treatment With ACTH |
| NCT01228279 | PHASE4 | COMPLETED | Sympathetic Activity in Patients With End-stage Renal Disease on Peritoneal Dialysis |
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Related Atlas pages
- Associated diseases: Joubert syndrome 7, COACH syndrome 1, Joubert syndrome with renal defect, Meckel syndrome, type 1, ciliopathy, Meckel syndrome, type 5
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Bardet-Biedl syndrome, ciliopathy, COACH syndrome 1, COACH syndrome 3, focal segmental glomerulosclerosis, Joubert syndrome, Joubert syndrome 7, Joubert syndrome and related disorders, Joubert syndrome with renal defect, kidney disorder, Leber congenital amaurosis, Meckel syndrome, Meckel syndrome, type 5, nephronophthisis, vitiligo