RPH3AL-AS1

Summary

RPH3AL-AS1 (RPH3AL antisense RNA 1, HGNC:55345) is a long non-coding RNA gene on chromosome 17p13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55345
Approved symbol	RPH3AL-AS1
Name	RPH3AL antisense RNA 1
Location	17p13.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	AC129507.1
Ensembl gene	ENSG00000262061
Ensembl biotype	lncRNA
Entrez	100506388
RNAcentral	URS0000EEACC0 — lncRNA, 699 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 8 lncRNA, 2 retained_intron

ENST00000570711, ENST00000573601, ENST00000574432, ENST00000575743, ENST00000575899, ENST00000662387, ENST00000687733, ENST00000793091, ENST00000793092, ENST00000793093

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000570711 — 3 exons

Exon	Start	End
ENSE00002645362	331205	331717
ENSE00002680036	331800	331866
ENSE00004175600	333056	333488

Expression profiles

Bgee: expression breadth ubiquitous, 129 present calls, max score 85.53.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2469 / max 39.5068, expressed in 106 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
158676	0.2469	106

Top tissues by expression

129 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right adrenal gland	UBERON:0001233	85.53	gold quality
right adrenal gland cortex	UBERON:0035827	83.87	gold quality
left adrenal gland	UBERON:0001234	81.08	gold quality
apex of heart	UBERON:0002098	81.03	gold quality
left adrenal gland cortex	UBERON:0035825	80.94	gold quality
left ovary	UBERON:0002119	80.20	gold quality
ovary	UBERON:0000992	79.85	gold quality
adrenal gland	UBERON:0002369	79.54	gold quality
right ovary	UBERON:0002118	78.70	gold quality
cerebellar hemisphere	UBERON:0002245	78.27	gold quality
heart left ventricle	UBERON:0002084	78.20	gold quality
cerebellar cortex	UBERON:0002129	78.20	gold quality
cerebellum	UBERON:0002037	78.19	gold quality
right hemisphere of cerebellum	UBERON:0014890	78.13	gold quality
bone marrow cell	CL:0002092	77.91	gold quality
pituitary gland	UBERON:0000007	76.40	gold quality
spleen	UBERON:0002106	75.75	gold quality
placenta	UBERON:0001987	74.59	gold quality
heart	UBERON:0000948	74.46	gold quality
right atrium auricular region	UBERON:0006631	74.21	gold quality
body of pancreas	UBERON:0001150	73.70	gold quality
skeletal muscle tissue	UBERON:0001134	73.36	gold quality
adenohypophysis	UBERON:0002196	73.25	gold quality
muscle tissue	UBERON:0002385	72.06	gold quality
hindlimb stylopod muscle	UBERON:0004252	72.02	gold quality
omental fat pad	UBERON:0010414	71.20	gold quality
primary visual cortex	UBERON:0002436	71.19	gold quality
superior frontal gyrus	UBERON:0002661	70.71	gold quality
muscle of leg	UBERON:0001383	70.07	gold quality
gastrocnemius	UBERON:0001388	70.05	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.83

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.