RPL15
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Also known as RPL10RPLY10RPYL10EC45L15eL15
Summary
RPL15 (ribosomal protein L15, HGNC:10306) is a protein-coding gene on chromosome 3p24.2, encoding Large ribosomal subunit protein eL15 (P61313). Component of the large ribosomal subunit. It is a common-essential gene (DepMap: required in 100.0% of cancer cell lines).
Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of four RNA species and approximately 80 structurally distinct proteins. This gene encodes a member of the L15E family of ribosomal proteins and a component of the 60S subunit. This gene shares sequence similarity with the yeast ribosomal protein YL10 gene. Elevated expression of this gene has been observed in esophageal tumors and gastric cancer tissues, and deletion of this gene has been observed in a Diamond-Blackfan anemia (DBA) patient. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome.
Source: NCBI Gene 6138 — RefSeq curated summary.
At a glance
- Gene–disease (curated): X-linked syndromic intellectual disability (Definitive, ClinGen) — +6 more curated relationships
- GWAS associations: 4
- Clinical variants (ClinVar): 111 total — 4 pathogenic, 5 likely-pathogenic
- Phenotypes (HPO): 62
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- Cancer dependency (DepMap): dependent in 100.0% of screened cell lines (common-essential)
- Dosage sensitivity (ClinGen): haploinsufficiency no evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_002948
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:10306 |
| Approved symbol | RPL15 |
| Name | ribosomal protein L15 |
| Location | 3p24.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | RPL10, RPLY10, RPYL10, EC45, L15, eL15 |
| Ensembl gene | ENSG00000174748 |
| Ensembl biotype | protein_coding |
| OMIM | 604174 |
| Entrez | 6138 |
Gene structure
Transcript identifiers
Ensembl transcripts: 34 — 32 protein_coding, 2 retained_intron
ENST00000307839, ENST00000354811, ENST00000412097, ENST00000413699, ENST00000415719, ENST00000422218, ENST00000434031, ENST00000436146, ENST00000456530, ENST00000465786, ENST00000490223, ENST00000611050, ENST00000643707, ENST00000644185, ENST00000644684, ENST00000645079, ENST00000889023, ENST00000889024, ENST00000889025, ENST00000913519, ENST00000913520, ENST00000913521, ENST00000913522, ENST00000913523, ENST00000913524, ENST00000913525, ENST00000913526, ENST00000913527, ENST00000913528, ENST00000913529, ENST00000913530, ENST00000913531, ENST00000913532, ENST00000913533
RefSeq mRNA: 6 — MANE Select: NM_002948
NM_001253379, NM_001253380, NM_001253382, NM_001253383, NM_001253384, NM_002948
CCDS: CCDS2640, CCDS58818
Canonical transcript exons
ENST00000307839 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001162288 | 23917850 | 23918031 |
| ENSE00001525948 | 23917132 | 23917173 |
| ENSE00003524186 | 23918440 | 23918576 |
| ENSE00003903465 | 23919196 | 23920989 |
Expression profiles
Bgee: expression breadth ubiquitous, 303 present calls, max score 99.86.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 168.1195 / max 791.6159, expressed in 1825 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 35724 | 90.7232 | 1819 |
| 35725 | 68.6820 | 1818 |
| 35726 | 8.1794 | 1721 |
| 35727 | 0.5349 | 220 |
Top tissues by expression
303 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| left ovary | UBERON:0002119 | 99.86 | gold quality |
| cortical plate | UBERON:0005343 | 99.86 | gold quality |
| right ovary | UBERON:0002118 | 99.85 | gold quality |
| left testis | UBERON:0004533 | 99.85 | gold quality |
| right testis | UBERON:0004534 | 99.85 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 99.84 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 99.84 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 99.84 | gold quality |
| endocervix | UBERON:0000458 | 99.83 | gold quality |
| gall bladder | UBERON:0002110 | 99.83 | gold quality |
| ganglionic eminence | UBERON:0004023 | 99.83 | gold quality |
| caput epididymis | UBERON:0004358 | 99.83 | gold quality |
| ovary | UBERON:0000992 | 99.82 | gold quality |
| body of uterus | UBERON:0009853 | 99.82 | gold quality |
| stromal cell of endometrium | CL:0002255 | 99.81 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 99.81 | gold quality |
| granulocyte | CL:0000094 | 99.80 | gold quality |
| pituitary gland | UBERON:0000007 | 99.80 | gold quality |
| adenohypophysis | UBERON:0002196 | 99.80 | gold quality |
| ventricular zone | UBERON:0003053 | 99.80 | gold quality |
| ectocervix | UBERON:0012249 | 99.80 | gold quality |
| lymph node | UBERON:0000029 | 99.79 | gold quality |
| right uterine tube | UBERON:0001302 | 99.79 | gold quality |
| skin of abdomen | UBERON:0001416 | 99.79 | gold quality |
| right coronary artery | UBERON:0001625 | 99.79 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 99.79 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 99.78 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 99.78 | gold quality |
| body of stomach | UBERON:0001161 | 99.78 | gold quality |
| left uterine tube | UBERON:0001303 | 99.78 | gold quality |
Single-cell (SCXA)
Detected in 27 experiment(s), a significant marker in 12.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-9 | yes | 4145.29 |
| E-CURD-46 | yes | 78.59 |
| E-CURD-122 | yes | 75.27 |
| E-CURD-88 | yes | 63.84 |
| E-MTAB-9221 | yes | 51.77 |
| E-MTAB-6678 | yes | 35.94 |
| E-MTAB-9067 | yes | 33.48 |
| E-CURD-112 | yes | 21.60 |
| E-MTAB-10042 | yes | 16.20 |
| E-HCAD-35 | yes | 8.21 |
| E-GEOD-137537 | yes | 6.53 |
| E-MTAB-9801 | yes | 6.29 |
| E-GEOD-124263 | no | 8397.07 |
| E-HCAD-4 | no | 7547.36 |
| E-MTAB-10432 | no | 7079.52 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
60 targeting RPL15, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-32-5P | 99.98 | 75.21 | 1964 |
| HSA-MIR-92A-3P | 99.98 | 75.21 | 1960 |
| HSA-MIR-92B-3P | 99.98 | 75.25 | 1955 |
| HSA-MIR-25-3P | 99.98 | 74.60 | 1817 |
| HSA-MIR-363-3P | 99.98 | 74.72 | 1821 |
| HSA-MIR-367-3P | 99.98 | 74.83 | 1819 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-4789-5P | 99.98 | 70.76 | 2721 |
| HSA-MIR-302C-5P | 99.97 | 72.56 | 3642 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-6845-3P | 99.94 | 66.88 | 1439 |
| HSA-MIR-329-3P | 99.91 | 66.56 | 1234 |
| HSA-MIR-362-3P | 99.91 | 66.38 | 1267 |
| HSA-MIR-627-3P | 99.90 | 71.42 | 3316 |
| HSA-MIR-4307 | 99.82 | 70.45 | 3374 |
| HSA-MIR-320A-3P | 99.77 | 69.73 | 2107 |
| HSA-MIR-320B | 99.77 | 69.73 | 2107 |
| HSA-MIR-320C | 99.77 | 69.73 | 2107 |
| HSA-MIR-320D | 99.77 | 69.73 | 2107 |
| HSA-MIR-4429 | 99.77 | 69.62 | 2111 |
| HSA-MIR-1179 | 99.71 | 68.70 | 1040 |
| HSA-MIR-3618 | 99.69 | 68.57 | 1012 |
| HSA-MIR-7-5P | 99.67 | 70.53 | 1809 |
| HSA-MIR-3158-5P | 99.65 | 67.51 | 1763 |
| HSA-MIR-3679-3P | 99.64 | 69.88 | 1599 |
| HSA-MIR-488-3P | 99.61 | 68.79 | 1731 |
| HSA-MIR-4762-5P | 99.57 | 68.54 | 1424 |
| HSA-MIR-4325 | 99.49 | 72.20 | 1342 |
Functional genomics
ClinGen dosage: haploinsufficiency 0 (no evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
DepMap (CRISPR cell-line fitness): dependent in 100.0% of screened cell lines, common-essential.
Literature-anchored findings (GeneRIF, showing 13)
- RPL15 promotes cell proliferation in gastric neoplasms (PMID:16608517)
- RPL15 gene expression is decreased in both classic and follicular variants of papillary thyroid carcinoma. (PMID:21509594)
- ISG56 interacts with ribosomal protein L15 in gastric cancer cells. (PMID:21612406)
- These data identify RPL15 as a new gene involved in Diamond-Blackfan anemia. (PMID:23812780)
- Downregulation of RPL15 is associated with tumor progression in pancreatic ductal adenocarcinoma. (PMID:26498693)
- Aurora kinase inhibitor danusertib negatively regulated AURKB/p70S6K/RPL15 axis with the involvement of PI3K/Akt/mTOR, AMPK, and p38 MAPK signaling pathways, leading to the induction of apoptosis and autophagy in human leukemia cells. (PMID:27612557)
- This study identifies a novel subgroup of DBA with mutations in the RPL15 gene with an unexpected high rate of hydrops fetalis and spontaneous, long-lasting remission. (PMID:29599205)
- RPL15 is required for maintaining normal nucleolar structure. RPL15 is involved in human colon carcinogenesis.RPL15 is overexpressed in colon cancer. (PMID:31523176)
- Circ-RPL15: a plasma circular RNA as novel oncogenic driver to promote progression of chronic lymphocytic leukemia. (PMID:31611623)
- Identification of Potential Biomarkers for Intervertebral Disc Degeneration Using the Genome-Wide Expression Analysis. (PMID:31904996)
- Overexpressed circ-RPL15 predicts poor survival and promotes the progression of gastric cancer via regulating miR-502-3p/OLFM4/STAT3 pathway. (PMID:32559850)
- Detection of mRNAs of Ribosomal Protein L15 and E-Cadherin in Living Circulating Tumor Cells at Single Cell Resolution To Study Tumor Heterogeneity. (PMID:35856393)
- Decreased expression of RPL15 and RPL18 exacerbated the calcification of valve interstitial cells during aortic valve calcification. (PMID:37431269)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | rpl15 | ENSDARG00000009285 |
| mus_musculus | Rpl15 | ENSMUSG00000012405 |
| rattus_norvegicus | Rpl15 | ENSRNOG00000008140 |
| drosophila_melanogaster | RpL15 | FBGN0028697 |
| caenorhabditis_elegans | WBGENE00004427 |
Protein
Protein identifiers
Large ribosomal subunit protein eL15 — P61313 (reviewed: P61313)
Alternative names: 60S ribosomal protein L15
All UniProt accessions (7): A0A2R8Y738, A0A2R8YEM3, E7ENU7, E7EQV9, E7ERA2, E7EX53, P61313
UniProt curated annotations — full annotation on UniProt →
Function. Component of the large ribosomal subunit. The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell.
Subunit / interactions. Component of the large ribosomal subunit. Interacts with IFIT1 (via TPR repeats 1-4).
Subcellular location. Cytoplasm.
Disease relevance. Diamond-Blackfan anemia 12 (DBA12) [MIM:615550] An autosomal dominant form of Diamond-Blackfan anemia, a congenital non-regenerative hypoplastic anemia that usually presents early in infancy. Diamond-Blackfan anemia is characterized by a moderate to severe macrocytic anemia, erythroblastopenia, and an increased risk of malignancy. 30 to 40% of Diamond-Blackfan anemia patients present with short stature and congenital anomalies, the most frequent being craniofacial (Pierre-Robin syndrome and cleft palate), thumb and urogenital anomalies. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the eukaryotic ribosomal protein eL15 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P61313-1 | 1 | yes |
| P61313-2 | 2 |
RefSeq proteins (6): NP_001240308, NP_001240309, NP_001240311, NP_001240312, NP_001240313, NP_002939* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000439 | Ribosomal_eL15 | Family |
| IPR012678 | Ribosomal_uL23/eL15/eS24_sf | Homologous_superfamily |
| IPR020925 | Ribosomal_eL15_CS | Conserved_site |
| IPR024794 | Rbsml_eL15_core_dom_sf | Homologous_superfamily |
Pfam: PF00827
UniProt features (14 total): sequence conflict 4, modified residue 3, initiator methionine 1, chain 1, region of interest 1, compositionally biased region 1, lipid moiety-binding region 1, cross-link 1, splice variant 1
Structure
Experimental structures (PDB)
192 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8A3D | ELECTRON MICROSCOPY | 1.67 |
| 8GLP | ELECTRON MICROSCOPY | 1.67 |
| 8QYX | ELECTRON MICROSCOPY | 1.78 |
| 8QOI | ELECTRON MICROSCOPY | 1.9 |
| 9O3W | ELECTRON MICROSCOPY | 1.9 |
| 8YOO | ELECTRON MICROSCOPY | 2 |
| 9C3H | ELECTRON MICROSCOPY | 2 |
| 9I2D | ELECTRON MICROSCOPY | 2.19 |
| 9PBE | ELECTRON MICROSCOPY | 2.19 |
| 8QFD | ELECTRON MICROSCOPY | 2.2 |
| 8YOP | ELECTRON MICROSCOPY | 2.2 |
| 9GUL | ELECTRON MICROSCOPY | 2.2 |
| 9O3V | ELECTRON MICROSCOPY | 2.2 |
| 9O3Y | ELECTRON MICROSCOPY | 2.2 |
| 8JDK | ELECTRON MICROSCOPY | 2.26 |
| 8G5Y | ELECTRON MICROSCOPY | 2.29 |
| 9S3D | ELECTRON MICROSCOPY | 2.32 |
| 9RPV | ELECTRON MICROSCOPY | 2.35 |
| 9S3B | ELECTRON MICROSCOPY | 2.38 |
| 7OW7 | ELECTRON MICROSCOPY | 2.4 |
| 8K2C | ELECTRON MICROSCOPY | 2.4 |
| 8XSX | ELECTRON MICROSCOPY | 2.4 |
| 9SPF | ELECTRON MICROSCOPY | 2.4 |
| 9SPI | ELECTRON MICROSCOPY | 2.4 |
| 8JDL | ELECTRON MICROSCOPY | 2.42 |
| 9S3C | ELECTRON MICROSCOPY | 2.42 |
| 8FKV | ELECTRON MICROSCOPY | 2.47 |
| 9QLO | ELECTRON MICROSCOPY | 2.47 |
| 8FLE | ELECTRON MICROSCOPY | 2.48 |
| 9P8B | ELECTRON MICROSCOPY | 2.48 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P61313-F1 | 96.27 | 0.99 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (5): 34, 97, 100, 2, 83
Function
Pathways and Gene Ontology
Reactome pathways
16 pathways
| ID | Pathway |
|---|---|
| R-HSA-156827 | L13a-mediated translational silencing of Ceruloplasmin expression |
| R-HSA-156902 | Peptide chain elongation |
| R-HSA-1799339 | SRP-dependent cotranslational protein targeting to membrane |
| R-HSA-192823 | Viral mRNA Translation |
| R-HSA-2408557 | Selenocysteine synthesis |
| R-HSA-6791226 | Major pathway of rRNA processing in the nucleolus and cytosol |
| R-HSA-72689 | Formation of a pool of free 40S subunits |
| R-HSA-72706 | GTP hydrolysis and joining of the 60S ribosomal subunit |
| R-HSA-72764 | Eukaryotic Translation Termination |
| R-HSA-9010553 | Regulation of expression of SLITs and ROBOs |
| R-HSA-9633012 | Response of EIF2AK4 (GCN2) to amino acid deficiency |
| R-HSA-975956 | Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) |
| R-HSA-975957 | Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) |
| R-HSA-9954709 | Ribosome Quality Control (RQC) complex extracts and degrades nascent peptide |
| R-HSA-9954714 | PELO:HBS1L and ABCE1 dissociate a ribosome on a non-stop mRNA |
| R-HSA-9954716 | ZNF598 and the Ribosome-associated Quality Trigger (RQT) complex dissociate a ribosome stalled on a no-go mRNA |
MSigDB gene sets: 741 (showing top):
GOBP_CYTOPLASMIC_TRANSLATION, HORIUCHI_WTAP_TARGETS_DN, WANG_CLIM2_TARGETS_UP, NKX25_02, MODULE_151, GNF2_TPT1, ENK_UV_RESPONSE_KERATINOCYTE_UP, STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN, GAUSSMANN_MLL_AF4_FUSION_TARGETS_A_UP, GOBP_STRIATED_MUSCLE_CELL_DIFFERENTIATION, GOBP_MALE_GAMETE_GENERATION, GOBP_NEGATIVE_REGULATION_OF_CELLULAR_COMPONENT_ORGANIZATION, GOBP_TRANSLATION, GOBP_POST_TRANSCRIPTIONAL_REGULATION_OF_GENE_EXPRESSION, GOMF_TRANSLATION_REGULATOR_ACTIVITY
GO Biological Process (2): cytoplasmic translation (GO:0002181), translation (GO:0006412)
GO Molecular Function (4): RNA binding (GO:0003723), structural constituent of ribosome (GO:0003735), cadherin binding (GO:0045296), protein binding (GO:0005515)
GO Cellular Component (9): nucleus (GO:0005634), cytoplasm (GO:0005737), cytosol (GO:0005829), ribosome (GO:0005840), cytosolic large ribosomal subunit (GO:0022625), cytosolic ribosome (GO:0022626), synapse (GO:0045202), ribosomal subunit (GO:0044391), ribonucleoprotein complex (GO:1990904)
Reactome top-level categories
Rollup of top-11 pathways:
| Category | Pathways |
|---|---|
| Ribosome-associated quality control | 3 |
| Translation | 2 |
| Cap-dependent Translation Initiation | 2 |
| Nonsense-Mediated Decay (NMD) | 2 |
| Eukaryotic Translation Initiation | 1 |
| Eukaryotic Translation Elongation | 1 |
| Influenza Viral RNA Transcription and Replication | 1 |
| Selenoamino acid metabolism | 1 |
| rRNA processing in the nucleus and cytosol | 1 |
| Signaling by ROBO receptors | 1 |
| Cellular response to starvation | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| ribosome | 3 |
| cellular anatomical structure | 2 |
| translation | 1 |
| peptidyltransferase activity | 1 |
| translational initiation | 1 |
| translational elongation | 1 |
| translational termination | 1 |
| macromolecule biosynthetic process | 1 |
| protein metabolic process | 1 |
| protein biosynthetic process | 1 |
| nucleic acid binding | 1 |
| structural molecule activity | 1 |
| cell adhesion molecule binding | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| intracellular membraneless organelle | 1 |
| large ribosomal subunit | 1 |
| cytosolic ribosome | 1 |
| cytosol | 1 |
| cell junction | 1 |
| ribonucleoprotein complex | 1 |
| protein-containing complex | 1 |
Protein interactions and networks
STRING
0 interactions, top by confidence (×1000):
IntAct
258 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MAP3K14 | CHUK | psi-mi:“MI:0914”(association) | 0.950 |
| STAU1 | RPLP0 | psi-mi:“MI:0914”(association) | 0.750 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| FAM90A1 | KPNA3 | psi-mi:“MI:0914”(association) | 0.670 |
| RACK1 | RPS17 | psi-mi:“MI:0915”(physical association) | 0.610 |
| CFTR | HAX1 | psi-mi:“MI:0914”(association) | 0.610 |
| RPL15 | MEOX2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MEOX2 | RPL15 | psi-mi:“MI:0915”(physical association) | 0.560 |
| HTT | RPL15 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ATXN1 | RPL15 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MAPT | KIF2A | psi-mi:“MI:0914”(association) | 0.530 |
| MECP2 | GTPBP10 | psi-mi:“MI:0914”(association) | 0.530 |
| MAGEB10 | GTPBP10 | psi-mi:“MI:0914”(association) | 0.530 |
| RBM34 | NVL | psi-mi:“MI:0914”(association) | 0.530 |
| RPL37A | MPHOSPH10 | psi-mi:“MI:0914”(association) | 0.530 |
BioGRID (753): RPL15 (Affinity Capture-MS), RPL15 (Two-hybrid), RPL15 (Affinity Capture-MS), RPL15 (Affinity Capture-MS), RPL15 (Affinity Capture-MS), RPL15 (Affinity Capture-MS), RPL15 (Affinity Capture-MS), RPL15 (Affinity Capture-MS), RPL15 (Affinity Capture-MS), RPL15 (Affinity Capture-MS), RPL15 (Affinity Capture-MS), RPL15 (Affinity Capture-MS), RPL15 (Affinity Capture-MS), RPL15 (Affinity Capture-MS), RPL15 (Affinity Capture-MS)
ESM2 similar proteins: A0A087WNH4, B1NWE8, E2QXF3, G1T0C1, O49224, O82713, P0A5D0, P0CT81, P0CT82, P0CX86, P0CX87, P40590, P47830, P51417, P61313, P61314, P62120, P62121, P62122, P62123, P62124, P62125, P62945, P62946, P62947, P62948, P62949, P78569, P79324, P9WER7, P9WKT4, P9WKT5, Q4R5B2, Q5EAD6, Q5NVE0, Q5RFG9, Q6YLX4, Q71H53, Q75AH3, Q7KF89
Diamond homologs: A2ST55, A3CW58, A3DMU2, A4FZN9, A4YCU5, A6UX54, A6VIT8, A7I9D0, A9A7T0, B0R2U1, B6YSU2, B8D6C6, B9LSV1, C3MQ39, C3MVF7, C3N5Q6, C3NEC2, C3NHD0, C4KHD5, C5A1N3, E2QXF3, G1T0C1, O13418, O17445, O23515, O26786, O27965, O58706, O65050, O65082, O74895, O82528, O82712, P05748, P30736, P41961, P46289, P49403, P51417, P52818
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| RPL15 | “form complex” | “60S cytosolic large ribosomal subunit” | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 210 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| SRP-dependent cotranslational protein targeting to membrane | 23 | 16.5× | 3e-19 |
| Peptide chain elongation | 18 | 16.3× | 2e-15 |
| Viral mRNA Translation | 18 | 16.3× | 2e-15 |
| PELO:HBS1L and ABCE1 dissociate a ribosome on a non-stop mRNA | 18 | 16.1× | 3e-15 |
| Selenocysteine synthesis | 18 | 15.5× | 4e-15 |
| Eukaryotic Translation Termination | 18 | 15.5× | 4e-15 |
| Formation of a pool of free 40S subunits | 19 | 15.2× | 2e-15 |
| Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) | 18 | 15.1× | 5e-15 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| cytoplasmic translation | 21 | 20.9× | 4e-19 |
| stress granule assembly | 5 | 16.2× | 2e-03 |
| ribosomal large subunit biogenesis | 6 | 14.3× | 9e-04 |
| regulation of signal transduction by p53 class mediator | 6 | 12.3× | 1e-03 |
| excitatory postsynaptic potential | 5 | 11.9× | 7e-03 |
| intrinsic apoptotic signaling pathway | 6 | 11.6× | 2e-03 |
| translation | 20 | 11.1× | 1e-12 |
| rRNA processing | 14 | 10.7× | 2e-08 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
111 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 4 |
| Likely pathogenic | 5 |
| Uncertain significance | 42 |
| Likely benign | 13 |
| Benign | 7 |
Top pathogenic / likely-pathogenic (9)
| Variant ID | HGVS | Classification |
|---|---|---|
| 3242417 | NM_006013.5(RPL10):c.452C>T (p.Ala151Val) | Pathogenic |
| 430612 | NM_006013.5(RPL10):c.232A>G (p.Lys78Glu) | Pathogenic |
| 430613 | NM_006013.5(RPL10):c.481G>A (p.Gly161Ser) | Pathogenic |
| 430614 | NM_006013.5(RPL10):c.191C>T (p.Ala64Val) | Pathogenic |
| 1211088 | NM_006013.5(RPL10):c.482G>A (p.Gly161Asp) | Likely pathogenic |
| 3342312 | NM_006013.5(RPL10):c.283C>T (p.His95Tyr) | Likely pathogenic |
| 431945 | NM_006013.5(RPL10):c.8G>A (p.Arg3His) | Likely pathogenic |
| 4681737 | NM_006013.5(RPL10):c.95G>T (p.Arg32Leu) | Likely pathogenic |
| 818225 | NM_006013.5(RPL10):c.565C>T (p.Arg189Trp) | Likely pathogenic |
SpliceAI
919 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 3:23917089:A:T | donor_gain | 1.0000 |
| 3:23918027:GCAAG:G | donor_gain | 1.0000 |
| 3:23918029:AAGG:A | donor_loss | 1.0000 |
| 3:23918030:AGGT:A | donor_loss | 1.0000 |
| 3:23918031:GGT:G | donor_loss | 1.0000 |
| 3:23918032:G:C | donor_loss | 1.0000 |
| 3:23918435:T:TA | acceptor_gain | 1.0000 |
| 3:23918438:A:AG | acceptor_gain | 1.0000 |
| 3:23918438:AG:A | acceptor_gain | 1.0000 |
| 3:23918439:G:GG | acceptor_gain | 1.0000 |
| 3:23918439:GG:G | acceptor_gain | 1.0000 |
| 3:23918439:GGT:G | acceptor_gain | 1.0000 |
| 3:23918439:GGTT:G | acceptor_gain | 1.0000 |
| 3:23918439:GGTTA:G | acceptor_gain | 1.0000 |
| 3:23918541:C:G | donor_gain | 1.0000 |
| 3:23918573:AGAGG:A | donor_loss | 1.0000 |
| 3:23918574:GAG:G | donor_gain | 1.0000 |
| 3:23918574:GAGG:G | donor_loss | 1.0000 |
| 3:23918575:AGGT:A | donor_loss | 1.0000 |
| 3:23918577:G:GC | donor_loss | 1.0000 |
| 3:23918578:T:A | donor_loss | 1.0000 |
| 3:23918583:GGTTT:G | donor_gain | 1.0000 |
| 3:23918584:GTTT:G | donor_gain | 1.0000 |
| 3:23918585:TTTT:T | donor_gain | 1.0000 |
| 3:23919191:TCTAG:T | acceptor_loss | 1.0000 |
| 3:23919193:TA:T | acceptor_loss | 1.0000 |
| 3:23919194:A:AG | acceptor_gain | 1.0000 |
| 3:23919194:AG:A | acceptor_gain | 1.0000 |
| 3:23919195:G:GG | acceptor_gain | 1.0000 |
| 3:23919195:GG:G | acceptor_gain | 1.0000 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000387932 (3:23916005 T>C), RS1000436754 (3:23916207 T>C,G), RS1000773421 (3:23914792 T>C), RS1000942407 (3:23922343 A>T), RS1000953830 (3:23922553 A>G), RS1001208500 (3:23921977 A>G), RS1001338945 (3:23917181 G>A,T), RS1001441448 (3:23917023 G>A,T), RS1001951471 (3:23923480 A>C), RS1002341412 (3:23916297 C>G,T), RS1002362948 (3:23923687 A>G), RS1002624626 (3:23920720 T>A,C), RS1003080482 (3:23924996 G>A,C), RS1003220602 (3:23919658 AAGT>A), RS1003642797 (3:23917627 A>G)
Disease associations
OMIM: gene MIM:604174 | disease phenotypes: MIM:300998, MIM:300847
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| intellectual disability, X-linked, syndromic, 35 | Definitive | X-linked |
| Diamond-Blackfan anemia 12 | Strong | Autosomal dominant |
| X-linked microcephaly-growth retardation-prognathism-cryptorchidism syndrome | Supportive | X-linked |
| X-linked intellectual disability-cerebellar hypoplasia-spondylo-epiphyseal dysplasia syndrome | Supportive | X-linked |
| Diamond-Blackfan anemia | Supportive | Autosomal dominant |
| autism, susceptibility to, X-linked 5 | Limited | X-linked |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| X-linked syndromic intellectual disability | Definitive | XL |
Mondo (7): intellectual disability, X-linked, syndromic, 35 (MONDO:0030908), autism, susceptibility to, X-linked 5 (MONDO:0010449), intellectual disability (MONDO:0001071), Diamond-Blackfan anemia 12 (MONDO:0014245), X-linked microcephaly-growth retardation-prognathism-cryptorchidism syndrome (MONDO:0018569), X-linked intellectual disability-cerebellar hypoplasia-spondylo-epiphyseal dysplasia syndrome (MONDO:0018724), Diamond-Blackfan anemia (MONDO:0015253)
Orphanet (1): NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
62 total (30 of 62 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000047 | Hypospadias |
| HP:0000085 | Horseshoe kidney |
| HP:0000104 | Renal agenesis |
| HP:0000119 | Abnormality of the genitourinary system |
| HP:0000185 | Cleft soft palate |
| HP:0000218 | High palate |
| HP:0000234 | Abnormality of the head |
| HP:0000252 | Microcephaly |
| HP:0000286 | Epicanthus |
| HP:0000294 | Low anterior hairline |
| HP:0000316 | Hypertelorism |
| HP:0000347 | Micrognathia |
| HP:0000369 | Low-set ears |
| HP:0000431 | Wide nasal bridge |
| HP:0000465 | Webbed neck |
| HP:0000470 | Short neck |
| HP:0000486 | Strabismus |
| HP:0000508 | Ptosis |
| HP:0000519 | Developmental cataract |
| HP:0000912 | Sprengel anomaly |
| HP:0000980 | Pallor |
| HP:0001087 | Developmental glaucoma |
| HP:0001199 | Triphalangeal thumb |
| HP:0001227 | Abnormality of the thenar eminence |
| HP:0001254 | Lethargy |
| HP:0001510 | Growth delay |
| HP:0001518 | Small for gestational age |
| HP:0001627 | Abnormal heart morphology |
| HP:0001629 | Ventricular septal defect |
GWAS associations
4 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002481_10 | Acne (severe) | 1.000000e-06 |
| GCST005316_103 | Intelligence (MTAG) | 2.000000e-15 |
| GCST005316_104 | Intelligence (MTAG) | 1.000000e-11 |
| GCST007044_10 | Extremely high intelligence | 3.000000e-11 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004337 | intelligence |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D029503 | Anemia, Diamond-Blackfan | C15.378.050.085.080.090; C15.378.050.750.500; C15.378.190.223.500.500.090; C16.320.077.090 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL3987582 (PROTEIN NUCLEIC-ACID COMPLEX), CHEMBL6067574 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL6067484 | GENTAMICIN SULFATE | 4 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
50 potent at pChembl≥5 of 54 total, top 49 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.23 | Kd | 59.2 | nM | CHEMBL5653589 |
| 7.23 | ED50 | 59.2 | nM | CHEMBL5653589 |
| 6.52 | IC50 | 300 | nM | CHEMBL4109308 |
| 6.42 | IC50 | 380 | nM | CHEMBL4109308 |
| 6.42 | IC50 | 380 | nM | CHEMBL4574496 |
| 6.41 | IC50 | 390 | nM | CHEMBL4126894 |
| 6.39 | IC50 | 410 | nM | CHEMBL4114159 |
| 6.37 | Kd | 424.8 | nM | CHEMBL3752910 |
| 6.37 | ED50 | 424.8 | nM | CHEMBL3752910 |
| 6.35 | IC50 | 450 | nM | CHEMBL4126496 |
| 6.30 | IC50 | 500 | nM | CHEMBL4574496 |
| 6.30 | IC50 | 500 | nM | CHEMBL4560206 |
| 6.16 | IC50 | 690 | nM | CHEMBL4130157 |
| 6.15 | IC50 | 710 | nM | CHEMBL4108338 |
| 6.11 | IC50 | 780 | nM | CHEMBL4114159 |
| 6.09 | IC50 | 820 | nM | CHEMBL4109308 |
| 6.07 | IC50 | 850 | nM | CHEMBL4107559 |
| 6.07 | IC50 | 850 | nM | CHEMBL4533299 |
| 6.05 | IC50 | 900 | nM | CHEMBL4126894 |
| 6.05 | IC50 | 900 | nM | CHEMBL4126496 |
| 6.04 | IC50 | 920 | nM | CHEMBL4554909 |
| 5.97 | IC50 | 1060 | nM | CHEMBL4128388 |
| 5.89 | IC50 | 1290 | nM | CHEMBL4130157 |
| 5.86 | IC50 | 1370 | nM | CHEMBL4107559 |
| 5.84 | IC50 | 1440 | nM | CHEMBL4108338 |
| 5.81 | IC50 | 1540 | nM | CHEMBL4534859 |
| 5.76 | IC50 | 1730 | nM | CHEMBL4534859 |
| 5.69 | IC50 | 2050 | nM | CHEMBL4566239 |
| 5.68 | IC50 | 2080 | nM | CHEMBL4446635 |
| 5.66 | IC50 | 2210 | nM | CHEMBL4446635 |
| 5.66 | EC50 | 2200 | nM | CHEMBL4464929 |
| 5.64 | IC50 | 2270 | nM | CHEMBL4533299 |
| 5.63 | IC50 | 2330 | nM | CHEMBL4566239 |
| 5.62 | IC50 | 2380 | nM | CHEMBL4128388 |
| 5.58 | IC50 | 2630 | nM | CHEMBL4128250 |
| 5.55 | IC50 | 2820 | nM | CHEMBL4127458 |
| 5.53 | IC50 | 2970 | nM | CHEMBL4127311 |
| 5.51 | IC50 | 3080 | nM | CHEMBL4126072 |
| 5.46 | IC50 | 3500 | nM | CHEMBL4525277 |
| 5.44 | IC50 | 3630 | nM | CHEMBL4469712 |
| 5.39 | IC50 | 4100 | nM | CHEMBL4128560 |
| 5.37 | IC50 | 4300 | nM | CHEMBL4127016 |
| 5.36 | IC50 | 4380 | nM | CHEMBL4527910 |
| 5.16 | IC50 | 7000 | nM | CHEMBL4109308 |
| 5.13 | IC50 | 7400 | nM | CHLORAMPHENICOL SULFATE SALT |
| 5.09 | IC50 | 8040 | nM | CHEMBL4128250 |
| 5.08 | IC50 | 8370 | nM | CHEMBL4128250 |
| 5.03 | IC50 | 9320 | nM | CHEMBL4127016 |
| 5.03 | IC50 | 9240 | nM | CHEMBL4128560 |
PubChem BioAssay actives
48 with measured affinity, of 209 total; 28 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149246: Binding affinity to human RPL15 incubated for 45 mins by Kinobead based pull down assay | kd | 0.0592 | uM |
| N-(3-chloro-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-4-(triazolo[4,5-b]pyridin-3-yl)benzamide | 1585498: Binding affinity to 80S ribosome in human HuH7 cells expressing human C-terminal V5/6-His-tagged PCSK9 assessed as inhibition of PCSK9 secretion after 16 to 24 hrs by AlphaLISA method | ic50 | 0.3000 | uM |
| N-(3-chloro-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-3-[4-(triazolo[4,5-b]pyridin-3-yl)phenyl]propanamide | 1532845: Binding affinity to 80S ribosome in human HuH7 cells harboring human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.3800 | uM |
| N-isoquinolin-1-yl-N-[(3R)-piperidin-3-yl]-4-(triazolo[4,5-b]pyridin-3-yl)benzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.3900 | uM |
| N-(3-chloro-2-pyridinyl)-4-(6-methyltriazolo[4,5-b]pyridin-3-yl)-N-[(3R)-piperidin-3-yl]benzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.4100 | uM |
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149246: Binding affinity to human RPL15 incubated for 45 mins by Kinobead based pull down assay | kd | 0.4248 | uM |
| N-(3-chloro-2-pyridinyl)-4-(5-methyltriazolo[4,5-b]pyridin-3-yl)-N-[(3R)-piperidin-3-yl]benzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.4500 | uM |
| N-(1-methylpyrrolo[2,3-c]pyridin-7-yl)-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 0.5000 | uM |
| N-isoquinolin-1-yl-N-[(3R)-piperidin-3-yl]-4-pyrazolo[1,5-a]pyrimidin-3-ylbenzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.6900 | uM |
| N-(3-chloro-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-5-(triazolo[4,5-b]pyridin-3-yl)pyridine-2-carboxamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.7100 | uM |
| N-(3-chloro-2-pyridinyl)-3-[5-(6-methyltriazolo[4,5-b]pyridin-3-yl)-2-pyridinyl]-N-[(3R)-piperidin-3-yl]propanamide | 1532845: Binding affinity to 80S ribosome in human HuH7 cells harboring human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.8500 | uM |
| N-(3-chloro-2-pyridinyl)-5-(6-methyltriazolo[4,5-b]pyridin-3-yl)-N-[(3R)-piperidin-3-yl]pyridine-2-carboxamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.8500 | uM |
| N-(3-methyl-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-4-pyrazolo[1,5-a]pyrimidin-3-ylpiperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 0.9200 | uM |
| N-isoquinolin-1-yl-4-(1-methylpyrazol-4-yl)-N-[(3R)-piperidin-3-yl]benzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 1.0600 | uM |
| N-isoquinolin-1-yl-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 1.5400 | uM |
| N-(3-methyl-2-pyridinyl)-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532845: Binding affinity to 80S ribosome in human HuH7 cells harboring human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 2.0500 | uM |
| N-(3-chloro-2-pyridinyl)-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 2.0800 | uM |
| N-(5,8-dihydroisoquinolin-1-yl)-3-(4-methoxyphenyl)-N-[(3R)-piperidin-3-yl]propanamide | 1584424: Inhibition of human 80S ribosome-mediated PCSK9 translation expressed in CHO-K1 cells assessed as reduction in PCSK9 secretion | ec50 | 2.2000 | uM |
| N-isoquinolin-1-yl-3-(4-methoxyphenyl)-N-[(3R)-piperidin-3-yl]propanamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 2.6300 | uM |
| N-(3-chloro-2-pyridinyl)-4-(6-methylpyrazin-2-yl)-N-[(3R)-piperidin-3-yl]benzamide | 1497963: Binding affinity to 80S ribosome in human HuH7 cells assessed as inhibition of PCSK9 mRNA translation after overnight incubation by ELISA | ic50 | 2.8200 | uM |
| N-(3-chloro-2-pyridinyl)-4-[6-(dimethylamino)pyrazin-2-yl]-N-[(3R)-piperidin-3-yl]benzamide | 1497963: Binding affinity to 80S ribosome in human HuH7 cells assessed as inhibition of PCSK9 mRNA translation after overnight incubation by ELISA | ic50 | 2.9700 | uM |
| N-(3-chloro-2-pyridinyl)-4-[6-(methylamino)pyrazin-2-yl]-N-[(3R)-piperidin-3-yl]benzamide | 1497963: Binding affinity to 80S ribosome in human HuH7 cells assessed as inhibition of PCSK9 mRNA translation after overnight incubation by ELISA | ic50 | 3.0800 | uM |
| N-isoquinolin-1-yl-4-(6-methyl-1,2-benzoxazol-3-yl)-N-[(3R)-piperidin-3-yl]piperazine-1-carboxamide | 1532845: Binding affinity to 80S ribosome in human HuH7 cells harboring human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 3.5000 | uM |
| N-(3-methylpyrazin-2-yl)-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 3.6300 | uM |
| N-(3-chloro-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-6-(triazolo[4,5-b]pyridin-3-yl)pyridine-3-carboxamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 4.1000 | uM |
| N-isoquinolin-1-yl-N-[(3R)-piperidin-3-yl]-4-pyrazin-2-ylbenzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 4.3000 | uM |
| 4-(2-fluorophenyl)-N-(3-methyl-2-pyridinyl)-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 4.3800 | uM |
| 2,2-dichloro-N-[(1R,2R)-1,3-dihydroxy-1-(4-nitrophenyl)propan-2-yl]acetamide;sulfuric acid | 717551: Inhibition of mitochondrial ribosome-mediated protein synthesis in human HeLa cells assessed as {35S]methionine incorporation by autoradiography | ic50 | 7.4000 | uM |
CTD chemical–gene interactions
54 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, affects expression | 5 |
| bisphenol A | affects expression, increases expression | 3 |
| sodium arsenite | decreases expression, increases activity | 2 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression, increases expression | 2 |
| Air Pollutants | affects cotreatment, increases abundance, increases oxidation, decreases expression | 2 |
| Particulate Matter | increases expression, decreases expression, increases abundance | 2 |
| FR900359 | affects phosphorylation | 1 |
| methylmercuric chloride | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | affects cotreatment, increases oxidation, increases abundance | 1 |
| uranyl acetate | affects expression | 1 |
| deoxynivalenol | increases expression | 1 |
| pyrogallol 1,3-dimethyl ether | affects cotreatment, affects localization, increases expression | 1 |
| hydroxyhydroquinone | decreases expression | 1 |
| arsenite | affects binding, increases reaction | 1 |
| cobaltous chloride | increases expression | 1 |
| methacrylaldehyde | increases oxidation, increases abundance, affects cotreatment | 1 |
| epigallocatechin gallate | increases expression | 1 |
| chloropicrin | affects expression | 1 |
| ICG 001 | decreases expression | 1 |
| bisphenol B | increases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | increases expression, affects cotreatment | 1 |
| pentabrominated diphenyl ether 100 | decreases expression | 1 |
| hexabrominated diphenyl ether 153 | decreases expression | 1 |
| LDN 193189 | affects cotreatment, decreases expression | 1 |
| bisphenol AF | increases expression | 1 |
| Rosiglitazone | increases expression | 1 |
| Sunitinib | increases expression | 1 |
| Acrolein | affects cotreatment, increases oxidation, increases abundance | 1 |
ChEMBL screening assays
90 unique, capped per target: 90 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1920845 | Binding | Induction of ribosome to readthrough in human A-T lymphoblastoid cells assessed as ATM ser1981 autophosphorylation at 30 uM after 4 days by PTT-ELISA assay | Synthesis and evaluation of compounds that induce readthrough of premature termination codons. — Bioorg Med Chem Lett |
Clinical trials (associated diseases)
235 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00673608 | PHASE4 | COMPLETED | Magnetic Resonance Imaging (MRI) Assessments of the Heart and Liver Iron Load in Patients With Transfusion Induced Iron Overload |
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT00235391 | PHASE3 | COMPLETED | Expanded Access of Deferasirox to Patients With Congenital Disorders of Red Blood Cells and Chronic Iron Overload |
| NCT02270736 | PHASE3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT00001962 | PHASE2 | TERMINATED | A Study to Determine Whether Therapy With Daclizumab Will Benefit Patients With Bone Marrow Failure |
| NCT00011505 | PHASE2 | COMPLETED | Mobilization of Stem Cells With G-CSF for Collection From Patients With Diamond-Blackfan Anemia |
| NCT00301834 | PHASE2 | COMPLETED | Alemtuzumab, Fludarabine, and Busulfan Followed By Donor Stem Cell Transplant in Treating Young Patients With Hematologic Disorders |
| NCT00957931 | PHASE2 | COMPLETED | Allo-HCT MUD for Non-malignant Red Blood Cell (RBC) Disorders: Sickle Cell, Thal, and DBA: Reduced Intensity Conditioning, Co-tx MSCs |
| NCT01529827 | PHASE2 | COMPLETED | Fludarabine Phosphate, Melphalan, and Low-Dose Total-Body Irradiation Followed by Donor Peripheral Blood Stem Cell Transplant in Treating Patients With Hematologic Malignancies |
| NCT02386267 | PHASE2 | UNKNOWN | L-leucine in Diamond Blackfan Anemia Patients |
| NCT02512679 | PHASE2 | TERMINATED | Related Hematopoietic Stem Cell Transplantation (HSCT) for Genetic Diseases of Blood Cells |
| NCT03333486 | PHASE2 | TERMINATED | Fludarabine Phosphate, Cyclophosphamide, Total Body Irradiation, and Donor Stem Cell Transplant in Treating Patients With Blood Cancer |
| NCT04099966 | PHASE2 | RECRUITING | AlloSCT for Malignant and Non-malignant Hematologic Diseases Utilizing Alpha/Beta T Cell and CD19+ B Cell Depletion |
| NCT04965597 | PHASE2 | COMPLETED | Treosulfan-Based Conditioning Regimen Before a Blood or Bone Marrow Transplant for the Treatment of Bone Marrow Failure Diseases (BMT CTN 1904) |
| NCT02304302 | PHASE2 | COMPLETED | Down Syndrome Memantine Follow-up Study |
| NCT03862950 | PHASE2 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome (Met) |
| NCT04529226 | PHASE2 | UNKNOWN | Study to Compare Clozapine vs Treatment as Usual in People With Intellectual Disability & Treatment-resistant Psychosis |
| NCT04821856 | PHASE2 | COMPLETED | Evaluation of the Effectiveness of Cannabidiol in Treating Severe Behavioural Problems in Children and Adolescents With Intellectual Disability |
| NCT01586455 | PHASE1 | COMPLETED | Human Placental-Derived Stem Cell Transplantation |
| NCT01917708 | PHASE1 | COMPLETED | Bone Marrow Transplant With Abatacept for Non-Malignant Diseases |
| NCT05273320 | PHASE1 | COMPLETED | Clinical Trial of Nabilone for Aggression in Adults With Intellectual and Developmental Disabilities |
| NCT05301361 | PHASE1 | ENROLLING_BY_INVITATION | Sensitivity of the NIH Toolbox to Stimulant Treatment in Intellectual Disabilities |
| NCT06016764 | PHASE1 | COMPLETED | Use of MRI and cTBS for Catatonia in Autism |
| NCT06586827 | PHASE1 | COMPLETED | Impact of Competency-Based Training and Technical Assistance Employment Outcomes of Individuals With ID/DD |
| NCT07531940 | PHASE1 | NOT_YET_RECRUITING | Escalating Doses of Memantine in Down Syndrome (MEDS-123) |
| NCT00176852 | PHASE2/PHASE3 | COMPLETED | Stem Cell Transplant for Hemoglobinopathy |
| NCT00176878 | PHASE2/PHASE3 | COMPLETED | Stem Cell Transplant for Bone Marrow Failure Syndromes |
| NCT00305708 | PHASE1/PHASE2 | COMPLETED | Busulfan, Antithymocyte Globulin, and Fludarabine Followed By a Donor Stem Cell Transplant in Treating Young Patients With Blood Disorders, Bone Marrow Disorders, Chronic Myelogenous Leukemia in First Chronic Phase, or Acute Myeloid Leukemia in First Remission |
| NCT01362595 | PHASE1/PHASE2 | COMPLETED | Pilot Phase I/II Study of Amino Acid Leucine in Treatment of Patients With Transfusion-Dependent Diamond Blackfan Anemia |
| NCT01419704 | PHASE1/PHASE2 | WITHDRAWN | Phase I/II Pilot Study of Mixed Chimerism to Treat Hemoglobinopathies |
| NCT01464164 | PHASE1/PHASE2 | TERMINATED | Safety and Efficacy Study of Sotatercept in Adults With Transfusion Dependent Diamond Blackfan Anemia |
| NCT01966367 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | CD34+ (Non-Malignant) Stem Cell Selection for Patients Receiving Allogeneic Stem Cell Transplantation |
| NCT02065869 | PHASE1/PHASE2 | TERMINATED | Safety Study of Gene Modified Donor T-cells Following TCRαβ+ Depleted Stem Cell Transplant |
| NCT03513328 | PHASE1/PHASE2 | COMPLETED | Conditioning Regimen for Allogeneic Hematopoietic Stem-Cell Transplantation |
| NCT03653338 | PHASE1/PHASE2 | RECRUITING | T-Cell Depleted Alternative Donor Bone Marrow Transplant for Sickle Cell Disease (SCD) and Other Anemias |
| NCT03733249 | PHASE1/PHASE2 | TERMINATED | Long Term Follow-up Study for Patients Enrolled on the BP-004 Clinical Study |
| NCT03966053 | PHASE1/PHASE2 | TERMINATED | The Use of Trifluoperazine in Transfusion Dependent DBA |
Related Atlas pages
- Associated diseases: autism, susceptibility to, X-linked 5, intellectual disability, X-linked, syndromic, 35, Diamond-Blackfan anemia 12, X-linked microcephaly-growth retardation-prognathism-cryptorchidism syndrome, X-linked intellectual disability-cerebellar hypoplasia-spondylo-epiphyseal dysplasia syndrome, Diamond-Blackfan anemia, X-linked syndromic intellectual disability
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): acne, autism, susceptibility to, X-linked 5, Diamond-Blackfan anemia, Diamond-Blackfan anemia 12, intellectual disability, intellectual disability, X-linked, syndromic, 35, X-linked intellectual disability-cerebellar hypoplasia-spondylo-epiphyseal dysplasia syndrome, X-linked microcephaly-growth retardation-prognathism-cryptorchidism syndrome