RPL17
geneOn this page
Also known as rpL23L17uL22
Summary
RPL17 (ribosomal protein L17, HGNC:10307) is a protein-coding gene on chromosome 18q21.1, encoding Large ribosomal subunit protein uL22 (P18621). Component of the large ribosomal subunit. It is a common-essential gene (DepMap: required in 100.0% of cancer cell lines).
Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 60S subunit. The protein belongs to the L22P family of ribosomal proteins. It is located in the cytoplasm. This gene has been referred to as rpL23 because the encoded protein shares amino acid identity with ribosomal protein L23 from Halobacterium marismortui; however, its official symbol is RPL17. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. Alternative splicing results in multiple transcript variants. Read-through transcription also exists between this gene and the neighboring downstream C18orf32 (chromosome 18 open reading frame 32) gene.
Source: NCBI Gene 6139 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 49 total — 1 likely-pathogenic
- Phenotypes (HPO): 2
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- Cancer dependency (DepMap): dependent in 100.0% of screened cell lines (common-essential)
- MANE Select transcript:
NM_001035006
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:10307 |
| Approved symbol | RPL17 |
| Name | ribosomal protein L17 |
| Location | 18q21.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | rpL23, L17, uL22 |
| Ensembl gene | ENSG00000265681 |
| Ensembl biotype | protein_coding |
| OMIM | 603661 |
| Entrez | 6139 |
Gene structure
Transcript identifiers
Ensembl transcripts: 51 — 42 protein_coding, 8 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000578528, ENST00000578532, ENST00000578966, ENST00000579248, ENST00000579408, ENST00000579495, ENST00000580210, ENST00000580261, ENST00000580387, ENST00000581091, ENST00000581305, ENST00000581373, ENST00000581741, ENST00000582588, ENST00000582782, ENST00000582935, ENST00000583036, ENST00000583637, ENST00000584364, ENST00000615479, ENST00000615760, ENST00000617346, ENST00000618613, ENST00000618619, ENST00000851991, ENST00000851992, ENST00000851993, ENST00000851994, ENST00000851995, ENST00000851996, ENST00000851997, ENST00000914346, ENST00000914347, ENST00000914348, ENST00000914349, ENST00000914350, ENST00000914351, ENST00000914352, ENST00000914353, ENST00000914354, ENST00000914355, ENST00000914356, ENST00000914357, ENST00000914358, ENST00000914359, ENST00000914360, ENST00000914361, ENST00000914362, ENST00000914363, ENST00000914364, ENST00000962425
RefSeq mRNA: 16 — MANE Select: NM_001035006
NM_000985, NM_001035006, NM_001199340, NM_001199341, NM_001199342, NM_001199343, NM_001199344, NM_001199345, NM_001369555, NM_001369556, NM_001369557, NM_001369558, NM_001369560, NM_001369561, NM_001369562, NM_001369563
CCDS: CCDS45865, CCDS56070, CCDS92461
Canonical transcript exons
ENST00000580261 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001703914 | 49488481 | 49488566 |
| ENSE00002684790 | 49492458 | 49492465 |
| ENSE00003492717 | 49491532 | 49491584 |
| ENSE00003696451 | 49491405 | 49491445 |
| ENSE00003697238 | 49490454 | 49490552 |
| ENSE00003699027 | 49490793 | 49490927 |
| ENSE00003789247 | 49489359 | 49489550 |
Expression profiles
Bgee: expression breadth ubiquitous, 134 present calls, max score 99.93.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 17.0838 / max 265.9175, expressed in 1735 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 171914 | 100.9686 | 1826 |
| 171915 | 9.8922 | 1666 |
| 171916 | 7.1917 | 1497 |
Top tissues by expression
134 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| left ovary | UBERON:0002119 | 99.93 | gold quality |
| ovary | UBERON:0000992 | 99.92 | gold quality |
| right ovary | UBERON:0002118 | 99.92 | gold quality |
| right uterine tube | UBERON:0001302 | 99.91 | gold quality |
| endometrium | UBERON:0001295 | 99.90 | gold quality |
| adenohypophysis | UBERON:0002196 | 99.90 | gold quality |
| pituitary gland | UBERON:0000007 | 99.89 | gold quality |
| endocervix | UBERON:0000458 | 99.89 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 99.89 | gold quality |
| body of pancreas | UBERON:0001150 | 99.89 | gold quality |
| thyroid gland | UBERON:0002046 | 99.89 | gold quality |
| calcaneal tendon | UBERON:0003701 | 99.89 | gold quality |
| body of uterus | UBERON:0009853 | 99.89 | gold quality |
| islet of Langerhans | UBERON:0000006 | 99.88 | gold quality |
| cerebellum | UBERON:0002037 | 99.88 | gold quality |
| cerebellar cortex | UBERON:0002129 | 99.88 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 99.88 | gold quality |
| metanephros cortex | UBERON:0010533 | 99.88 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 99.88 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 99.87 | gold quality |
| fundus of stomach | UBERON:0001160 | 99.87 | gold quality |
| left adrenal gland | UBERON:0001234 | 99.87 | gold quality |
| pancreas | UBERON:0001264 | 99.87 | gold quality |
| myometrium | UBERON:0001296 | 99.87 | gold quality |
| fallopian tube | UBERON:0003889 | 99.87 | gold quality |
| thoracic mammary gland | UBERON:0005200 | 99.87 | gold quality |
| lower esophagus | UBERON:0013473 | 99.87 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 99.87 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 99.87 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 99.87 | gold quality |
Single-cell (SCXA)
Detected in 35 experiment(s), a significant marker in 17.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-9543 | yes | 3117.44 |
| E-HCAD-1 | yes | 106.03 |
| E-MTAB-6701 | yes | 98.61 |
| E-CURD-122 | yes | 84.68 |
| E-MTAB-9221 | yes | 55.97 |
| E-CURD-88 | yes | 55.94 |
| E-CURD-46 | yes | 50.37 |
| E-HCAD-11 | yes | 48.92 |
| E-MTAB-8410 | yes | 43.79 |
| E-MTAB-6678 | yes | 41.54 |
| E-CURD-112 | yes | 28.36 |
| E-GEOD-135922 | yes | 25.84 |
| E-MTAB-9067 | yes | 25.55 |
| E-HCAD-9 | yes | 25.42 |
| E-ANND-3 | yes | 15.00 |
Regulation
Is transcription factor: no
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 100.0% of screened cell lines, common-essential.
Literature-anchored findings (GeneRIF, showing 2)
- The present study combines an individual-based phenotypic profiling with a transdiagnostic approach and shows that several ribosomal genes including RPL17 is involved in stress vulnerability across nonclinical and clinical conditions. (PMID:30103068)
- An atypical form of 60S ribosomal subunit in Diamond-Blackfan anemia linked to RPL17 variants. (PMID:39088281)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | rpl17 | ENSDARG00000057556 |
| drosophila_melanogaster | RpL17 | FBGN0029897 |
| caenorhabditis_elegans | rpl-17 | WBGENE00004429 |
Protein
Protein identifiers
Large ribosomal subunit protein uL22 — P18621 (reviewed: P18621)
Alternative names: 60S ribosomal protein L17, 60S ribosomal protein L23, PD-1
All UniProt accessions (10): A0A087WWH0, A0A087WXM6, A0A087WY81, P18621, J3KRB3, J3KRX5, J3KSJ0, J3QLC8, J3QQT2, J3QS96
UniProt curated annotations — full annotation on UniProt →
Function. Component of the large ribosomal subunit. The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell.
Subunit / interactions. Component of the large ribosomal subunit.
Subcellular location. Cytoplasm.
Tissue specificity. Expressed in pancreas, lung, colon, cystic duct, gall bladder, kidney and liver. Expressed at high levels in the well differentiated pancreatic tumor cell lines HPAF, COLO 357 and Capan-1, the moderately differentiated pancreatic tumor cell lines T3M-4, AsPc-1 and BxPc-3, the poorly differentiated pancreatic tumor cell line MIA PaCa-2, and the pancreatic tumor cell lines of undefined differentiation status such as SW979. Expressed at lower levels in the poorly differentiated pancreatic tumor cell lines HCG-25 and PANC-1.
Disease relevance. Diamond-Blackfan anemia 22 (DBA22) [MIM:621262] A form of Diamond-Blackfan anemia, a congenital non-regenerative hypoplastic anemia that usually presents early in infancy. Diamond-Blackfan anemia is characterized by a moderate to severe macrocytic anemia, erythroblastopenia, and an increased risk of malignancy. 30 to 40% of Diamond-Blackfan anemia patients present with short stature and congenital anomalies, the most frequent being craniofacial (Pierre-Robin syndrome and cleft palate), thumb and urogenital anomalies. DBA22 is an autosomal dominant form characterized by erythroid maturation failure and skeletal developmental defects. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the universal ribosomal protein uL22 family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P18621-1 | 1 | yes |
| P18621-2 | 2 | |
| P18621-3 | 3 |
RefSeq proteins (16): NP_000976, NP_001030178, NP_001186269, NP_001186270, NP_001186271, NP_001186272, NP_001186273, NP_001186274, NP_001356484, NP_001356485, NP_001356486, NP_001356487, NP_001356489, NP_001356490, NP_001356491, NP_001356492 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001063 | Ribosomal_uL22 | Family |
| IPR005721 | Ribosomal_uL22_euk_arc | Family |
| IPR018260 | Ribosomal_uL22_CS | Conserved_site |
| IPR036394 | Ribosomal_uL22_sf | Homologous_superfamily |
| IPR057265 | Ribosomal_uL22_arc | Family |
Pfam: PF00237
UniProt features (7 total): splice variant 2, initiator methionine 1, chain 1, region of interest 1, compositionally biased region 1, sequence conflict 1
Structure
Experimental structures (PDB)
195 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8A3D | ELECTRON MICROSCOPY | 1.67 |
| 8GLP | ELECTRON MICROSCOPY | 1.67 |
| 8QYX | ELECTRON MICROSCOPY | 1.78 |
| 8QOI | ELECTRON MICROSCOPY | 1.9 |
| 9O3W | ELECTRON MICROSCOPY | 1.9 |
| 8YOO | ELECTRON MICROSCOPY | 2 |
| 9C3H | ELECTRON MICROSCOPY | 2 |
| 9I2D | ELECTRON MICROSCOPY | 2.19 |
| 9PBE | ELECTRON MICROSCOPY | 2.19 |
| 8QFD | ELECTRON MICROSCOPY | 2.2 |
| 8YOP | ELECTRON MICROSCOPY | 2.2 |
| 9GUL | ELECTRON MICROSCOPY | 2.2 |
| 9O3V | ELECTRON MICROSCOPY | 2.2 |
| 9O3Y | ELECTRON MICROSCOPY | 2.2 |
| 8JDK | ELECTRON MICROSCOPY | 2.26 |
| 8G5Y | ELECTRON MICROSCOPY | 2.29 |
| 9S3D | ELECTRON MICROSCOPY | 2.32 |
| 9RPV | ELECTRON MICROSCOPY | 2.35 |
| 9S3B | ELECTRON MICROSCOPY | 2.38 |
| 7OW7 | ELECTRON MICROSCOPY | 2.4 |
| 8K2C | ELECTRON MICROSCOPY | 2.4 |
| 8XSX | ELECTRON MICROSCOPY | 2.4 |
| 9SPF | ELECTRON MICROSCOPY | 2.4 |
| 9SPI | ELECTRON MICROSCOPY | 2.4 |
| 8JDL | ELECTRON MICROSCOPY | 2.42 |
| 9S3C | ELECTRON MICROSCOPY | 2.42 |
| 8FKV | ELECTRON MICROSCOPY | 2.47 |
| 9QLO | ELECTRON MICROSCOPY | 2.47 |
| 8FLE | ELECTRON MICROSCOPY | 2.48 |
| 9P8B | ELECTRON MICROSCOPY | 2.48 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P18621-F1 | 91.85 | 0.81 |
Function
Pathways and Gene Ontology
Reactome pathways
16 pathways
| ID | Pathway |
|---|---|
| R-HSA-156827 | L13a-mediated translational silencing of Ceruloplasmin expression |
| R-HSA-156902 | Peptide chain elongation |
| R-HSA-1799339 | SRP-dependent cotranslational protein targeting to membrane |
| R-HSA-192823 | Viral mRNA Translation |
| R-HSA-2408557 | Selenocysteine synthesis |
| R-HSA-6791226 | Major pathway of rRNA processing in the nucleolus and cytosol |
| R-HSA-72689 | Formation of a pool of free 40S subunits |
| R-HSA-72706 | GTP hydrolysis and joining of the 60S ribosomal subunit |
| R-HSA-72764 | Eukaryotic Translation Termination |
| R-HSA-9010553 | Regulation of expression of SLITs and ROBOs |
| R-HSA-9633012 | Response of EIF2AK4 (GCN2) to amino acid deficiency |
| R-HSA-975956 | Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) |
| R-HSA-975957 | Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) |
| R-HSA-9954709 | Ribosome Quality Control (RQC) complex extracts and degrades nascent peptide |
| R-HSA-9954714 | PELO:HBS1L and ABCE1 dissociate a ribosome on a non-stop mRNA |
| R-HSA-9954716 | ZNF598 and the Ribosome-associated Quality Trigger (RQT) complex dissociate a ribosome stalled on a no-go mRNA |
MSigDB gene sets: 436 (showing top):
GOBP_CYTOPLASMIC_TRANSLATION, GOBP_NEGATIVE_REGULATION_OF_PROTEOLYSIS, GRUETZMANN_PANCREATIC_CANCER_DN, GOBP_INTRACELLULAR_PROTEIN_TRANSPORT, GGGNRMNNYCAT_UNKNOWN, MIDORIKAWA_AMPLIFIED_IN_LIVER_CANCER, MODULE_151, GNF2_TPT1, GCM_NPM1, MORF_UBE2I, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, GOBP_STRIATED_MUSCLE_CELL_DIFFERENTIATION, DACOSTA_UV_RESPONSE_VIA_ERCC3_UP, HSIAO_HOUSEKEEPING_GENES, GOBP_MALE_GAMETE_GENERATION
GO Biological Process (3): cytoplasmic translation (GO:0002181), translation (GO:0006412), RNA processing (GO:0006396)
GO Molecular Function (3): RNA binding (GO:0003723), structural constituent of ribosome (GO:0003735), protein binding (GO:0005515)
GO Cellular Component (9): nucleus (GO:0005634), cytoplasm (GO:0005737), cytosol (GO:0005829), cytosolic large ribosomal subunit (GO:0022625), cytosolic ribosome (GO:0022626), nucleolus (GO:0005730), ribosome (GO:0005840), large ribosomal subunit (GO:0015934), ribonucleoprotein complex (GO:1990904)
Reactome top-level categories
Rollup of top-11 pathways:
| Category | Pathways |
|---|---|
| Ribosome-associated quality control | 3 |
| Translation | 2 |
| Cap-dependent Translation Initiation | 2 |
| Nonsense-Mediated Decay (NMD) | 2 |
| Eukaryotic Translation Initiation | 1 |
| Eukaryotic Translation Elongation | 1 |
| Influenza Viral RNA Transcription and Replication | 1 |
| Selenoamino acid metabolism | 1 |
| rRNA processing in the nucleus and cytosol | 1 |
| Signaling by ROBO receptors | 1 |
| Cellular response to starvation | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| ribosome | 2 |
| cellular anatomical structure | 2 |
| intracellular membraneless organelle | 2 |
| translation | 1 |
| peptidyltransferase activity | 1 |
| translational initiation | 1 |
| translational elongation | 1 |
| translational termination | 1 |
| macromolecule biosynthetic process | 1 |
| protein metabolic process | 1 |
| protein biosynthetic process | 1 |
| gene expression | 1 |
| RNA biosynthetic process | 1 |
| primary metabolic process | 1 |
| nucleic acid binding | 1 |
| structural molecule activity | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| large ribosomal subunit | 1 |
| cytosolic ribosome | 1 |
| cytosol | 1 |
| nuclear lumen | 1 |
| ribosomal subunit | 1 |
| protein-containing complex | 1 |
Protein interactions and networks
STRING
4173 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RPL17 | RPL23 | P23131 | 971 |
| RPL17 | RPL5 | P46777 | 656 |
| RPL17 | RPL11 | P25121 | 629 |
| RPL17 | MRPL22 | Q9NWU5 | 571 |
| RPL17 | E9PSI1 | E9PSI1 | 507 |
| RPL17 | RPS15 | P11174 | 461 |
| RPL17 | RPS17 | P08708 | 450 |
| RPL17 | RPS3A | P33443 | 446 |
| RPL17 | RPS11 | P04643 | 436 |
| RPL17 | RPL6 | Q02878 | 428 |
| RPL17 | RPL26 | P61254 | 428 |
| RPL17 | RPL37 | P02403 | 420 |
| RPL17 | RPS9 | P46781 | 411 |
| RPL17 | FAU | P35544 | 404 |
| RPL17 | MRPL12 | P52815 | 402 |
IntAct
367 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| RACK1 | RPS17 | psi-mi:“MI:0915”(physical association) | 0.610 |
| MAPT | KIF2A | psi-mi:“MI:0914”(association) | 0.530 |
| MECP2 | GTPBP10 | psi-mi:“MI:0914”(association) | 0.530 |
| MAGEB10 | GTPBP10 | psi-mi:“MI:0914”(association) | 0.530 |
| ZNF2 | MPHOSPH10 | psi-mi:“MI:0914”(association) | 0.530 |
| ZNF71 | NVL | psi-mi:“MI:0914”(association) | 0.530 |
| NAP1L1 | RPL17 | psi-mi:“MI:0914”(association) | 0.530 |
| N | RBM47 | psi-mi:“MI:0914”(association) | 0.530 |
| MRPL50 | GTPBP10 | psi-mi:“MI:0914”(association) | 0.530 |
| CFTR | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.480 |
| PPP2R2B | DDX3X | psi-mi:“MI:0914”(association) | 0.460 |
| ESR1 | psi-mi:“MI:0914”(association) | 0.460 | |
| ESR2 | FBLL1 | psi-mi:“MI:0914”(association) | 0.460 |
| RPL17 | HSPA5 | psi-mi:“MI:0915”(physical association) | 0.400 |
| RPL17 | SPTAN1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| RPL17 | OCIAD2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| Ctcf | RPL36A | psi-mi:“MI:0915”(physical association) | 0.400 |
BioGRID (832): RPL17 (Affinity Capture-MS), RPL17 (Affinity Capture-MS), RPL17 (Affinity Capture-MS), AHCYL2 (Co-fractionation), GFM2 (Co-fractionation), MRPS7 (Co-fractionation), RPL17 (Co-fractionation), RPL17 (Co-fractionation), RPL17 (Co-fractionation), RPL17 (Co-fractionation), RPL17 (Co-fractionation), RPL17 (Co-fractionation), RPL17 (Co-fractionation), RPL17 (Co-fractionation), RPL17 (Co-fractionation)
ESM2 similar proteins: A0NGY0, A2I3Y6, A4FWB7, A6VGY9, A8CAG3, A9A9R0, G1SCJ6, O14339, O48557, O59794, P05740, P06389, P0DJ16, P18621, P24049, P35266, P35267, P37380, P46990, P51413, P62649, Q06R92, Q09JW2, Q0PXV9, Q1HR65, Q29IM3, Q33BZ2, Q3T025, Q4GXH5, Q4GXH6, Q4GXH7, Q4KTG9, Q4N4B9, Q4PM54, Q4UF75, Q54NG2, Q59TE0, Q5I5J1, Q5MGD1, Q5MIR6
Diamond homologs: A0B9W5, A0NGY0, A0RVX8, A1RVA1, A1RXG7, A1SNL3, A2BMC4, A2I3Y6, A2SPK8, A3CT02, A3DNB2, A3MTL6, A4FWB7, A4WIY9, A4YCX1, A5UL84, A6UQ48, A6UWU2, A6VGY9, A7I5P4, A8AA19, A8CAG3, A8MBL4, A9A5J0, A9A9R0, B1YD24, B4U505, B4U749, C0M7R4, G1SCJ6, O14339, O26115, O28359, O48557, O59423, O59794, P05740, P0C0D4, P0DE22, P0DJ16
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| RPL17 | “form complex” | “60S cytosolic large ribosomal subunit” | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 189 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) | 19 | 17.9× | 1e-16 |
| SRP-dependent cotranslational protein targeting to membrane | 22 | 17.6× | 4e-19 |
| Eukaryotic Translation Termination | 18 | 17.3× | 9e-16 |
| Peptide chain elongation | 17 | 17.3× | 3e-15 |
| Viral mRNA Translation | 17 | 17.3× | 3e-15 |
| PELO:HBS1L and ABCE1 dissociate a ribosome on a non-stop mRNA | 17 | 17.1× | 3e-15 |
| Selenocysteine synthesis | 17 | 16.4× | 7e-15 |
| Formation of a pool of free 40S subunits | 18 | 16.1× | 2e-15 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| cytoplasmic translation | 20 | 23.0× | 4e-19 |
| ribosomal large subunit biogenesis | 8 | 22.0× | 5e-07 |
| stress granule assembly | 5 | 18.7× | 7e-04 |
| translation | 24 | 15.3× | 4e-19 |
| rRNA processing | 16 | 14.1× | 8e-12 |
| translational initiation | 6 | 13.4× | 7e-04 |
| negative regulation of translation | 10 | 12.2× | 2e-06 |
| regulation of signal transduction by p53 class mediator | 5 | 11.9× | 5e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
49 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 1 |
| Uncertain significance | 22 |
| Likely benign | 16 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 3233357 | NM_001035006.5(RPL17):c.452del (p.Thr151fs) | Likely pathogenic |
SpliceAI
1845 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:38850356:TCCTA:T | donor_loss | 1.0000 |
| 17:38850357:CCTA:C | donor_loss | 1.0000 |
| 17:38850358:CTA:C | donor_loss | 1.0000 |
| 17:38850359:TA:T | donor_loss | 1.0000 |
| 17:38850360:A:AT | donor_loss | 1.0000 |
| 17:38850361:C:T | donor_loss | 1.0000 |
| 17:38850471:ATGTA:A | acceptor_gain | 1.0000 |
| 17:38850472:TGTA:T | acceptor_gain | 1.0000 |
| 17:38850473:GTA:G | acceptor_gain | 1.0000 |
| 17:38850474:TA:T | acceptor_gain | 1.0000 |
| 17:38850476:C:CC | acceptor_gain | 1.0000 |
| 17:38850476:C:T | acceptor_loss | 1.0000 |
| 17:38852601:CAC:C | donor_loss | 1.0000 |
| 17:38852602:A:AC | donor_gain | 1.0000 |
| 17:38852602:AC:A | donor_gain | 1.0000 |
| 17:38852602:ACC:A | donor_gain | 1.0000 |
| 17:38852603:C:A | donor_gain | 1.0000 |
| 17:38852603:C:CC | donor_gain | 1.0000 |
| 17:38852603:CCC:C | donor_gain | 1.0000 |
| 17:38852603:CCCT:C | donor_gain | 1.0000 |
| 17:38852603:CCCTT:C | donor_gain | 1.0000 |
| 17:38852728:GGCTC:G | acceptor_gain | 1.0000 |
| 17:38852729:GCTC:G | acceptor_gain | 1.0000 |
| 17:38852730:CTC:C | acceptor_gain | 1.0000 |
| 17:38852730:CTCC:C | acceptor_gain | 1.0000 |
| 17:38852731:TC:T | acceptor_gain | 1.0000 |
| 17:38852731:TCCT:T | acceptor_gain | 1.0000 |
| 17:38852732:CC:C | acceptor_gain | 1.0000 |
| 17:38852732:CCTAC:C | acceptor_loss | 1.0000 |
| 17:38852733:C:CC | acceptor_gain | 1.0000 |
AlphaMissense
1209 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 18:49489434:G:C | C144W | 1.000 |
| 18:49489435:C:T | C144Y | 1.000 |
| 18:49489436:A:G | C144R | 1.000 |
| 18:49489465:C:A | G134V | 1.000 |
| 18:49489465:C:T | G134D | 1.000 |
| 18:49489466:C:A | G134C | 1.000 |
| 18:49489466:C:G | G134R | 1.000 |
| 18:49489469:G:C | H133D | 1.000 |
| 18:49489471:G:T | A132D | 1.000 |
| 18:49489473:T:A | R131S | 1.000 |
| 18:49489473:T:G | R131S | 1.000 |
| 18:49489474:C:A | R131I | 1.000 |
| 18:49489474:C:G | R131T | 1.000 |
| 18:49489487:G:T | R127S | 1.000 |
| 18:49489531:A:G | L112P | 1.000 |
| 18:49490464:G:T | A102D | 1.000 |
| 18:49490465:C:G | A102P | 1.000 |
| 18:49490522:A:G | W83R | 1.000 |
| 18:49490522:A:T | W83R | 1.000 |
| 18:49490527:C:T | G81D | 1.000 |
| 18:49490528:C:G | G81R | 1.000 |
| 18:49490803:C:A | R69M | 1.000 |
| 18:49490866:A:G | L48P | 1.000 |
| 18:49490911:G:T | A33D | 1.000 |
| 18:49490918:C:T | E31K | 1.000 |
| 18:49489417:A:G | L150P | 0.999 |
| 18:49489417:A:T | L150H | 0.999 |
| 18:49489426:T:A | E147V | 0.999 |
| 18:49489427:C:T | E147K | 0.999 |
| 18:49489431:G:C | H145Q | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000261753 (18:49488623 G>A), RS1000314483 (18:49488255 A>T), RS1000701955 (18:49492482 A>G), RS1000813008 (18:49492437 C>A,T), RS1001163459 (18:49492530 A>T), RS1001237844 (18:49492188 C>G,T), RS1001704327 (18:49492884 A>G), RS1003263502 (18:49488658 G>A,C,T), RS1003504134 (18:49492507 A>G), RS1003669680 (18:49491177 A>G), RS1004231534 (18:49492179 A>C), RS1004393866 (18:49491018 T>C,G), RS1004461199 (18:49492014 G>A), RS1004731249 (18:49492201 C>G), RS1004788738 (18:49490658 A>G)
Disease associations
OMIM: gene MIM:603661 | disease phenotypes: MIM:209850
GenCC curated gene-disease
Mondo (5): pancytopenia (MONDO:0001529), macrocytic anemia (MONDO:0002281), fetal growth restriction (MONDO:0005030), autism (MONDO:0005260), attention deficit-hyperactivity disorder (MONDO:0007743)
Orphanet (0):
HPO phenotypes
2 total (2 of 2 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0001972 | Macrocytic anemia |
| HP:0000717 | Autism |
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST007692_2 | Chronic obstructive pulmonary disease | 1.000000e-08 |
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D000748 | Anemia, Macrocytic | C15.378.050.252 |
| D001321 | Autistic Disorder | F03.625.164.113.500 |
| D005317 | Fetal Growth Retardation | C12.050.703.277.370; C16.300.390; C23.550.393.450 |
| D010198 | Pancytopenia | C15.378.243.875 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL3987582 (PROTEIN NUCLEIC-ACID COMPLEX), CHEMBL6066947 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL6067484 | GENTAMICIN SULFATE | 4 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
48 potent at pChembl≥5 of 54 total, top 47 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.52 | IC50 | 300 | nM | CHEMBL4109308 |
| 6.42 | IC50 | 380 | nM | CHEMBL4109308 |
| 6.42 | IC50 | 380 | nM | CHEMBL4574496 |
| 6.41 | IC50 | 390 | nM | CHEMBL4126894 |
| 6.39 | IC50 | 410 | nM | CHEMBL4114159 |
| 6.35 | IC50 | 450 | nM | CHEMBL4126496 |
| 6.30 | IC50 | 500 | nM | CHEMBL4574496 |
| 6.30 | IC50 | 500 | nM | CHEMBL4560206 |
| 6.16 | IC50 | 690 | nM | CHEMBL4130157 |
| 6.15 | IC50 | 710 | nM | CHEMBL4108338 |
| 6.11 | IC50 | 780 | nM | CHEMBL4114159 |
| 6.09 | IC50 | 820 | nM | CHEMBL4109308 |
| 6.07 | IC50 | 850 | nM | CHEMBL4107559 |
| 6.07 | IC50 | 850 | nM | CHEMBL4533299 |
| 6.05 | IC50 | 900 | nM | CHEMBL4126894 |
| 6.05 | IC50 | 900 | nM | CHEMBL4126496 |
| 6.04 | IC50 | 920 | nM | CHEMBL4554909 |
| 5.97 | IC50 | 1060 | nM | CHEMBL4128388 |
| 5.89 | IC50 | 1290 | nM | CHEMBL4130157 |
| 5.86 | IC50 | 1370 | nM | CHEMBL4107559 |
| 5.84 | IC50 | 1440 | nM | CHEMBL4108338 |
| 5.81 | IC50 | 1540 | nM | CHEMBL4534859 |
| 5.76 | IC50 | 1730 | nM | CHEMBL4534859 |
| 5.69 | IC50 | 2050 | nM | CHEMBL4566239 |
| 5.68 | IC50 | 2080 | nM | CHEMBL4446635 |
| 5.66 | IC50 | 2210 | nM | CHEMBL4446635 |
| 5.66 | EC50 | 2200 | nM | CHEMBL4464929 |
| 5.64 | IC50 | 2270 | nM | CHEMBL4533299 |
| 5.63 | IC50 | 2330 | nM | CHEMBL4566239 |
| 5.62 | IC50 | 2380 | nM | CHEMBL4128388 |
| 5.58 | IC50 | 2630 | nM | CHEMBL4128250 |
| 5.55 | IC50 | 2820 | nM | CHEMBL4127458 |
| 5.53 | IC50 | 2970 | nM | CHEMBL4127311 |
| 5.51 | IC50 | 3080 | nM | CHEMBL4126072 |
| 5.46 | IC50 | 3500 | nM | CHEMBL4525277 |
| 5.44 | IC50 | 3630 | nM | CHEMBL4469712 |
| 5.39 | IC50 | 4100 | nM | CHEMBL4128560 |
| 5.37 | IC50 | 4300 | nM | CHEMBL4127016 |
| 5.36 | IC50 | 4380 | nM | CHEMBL4527910 |
| 5.18 | Kd | 6615 | nM | CHEMBL3752910 |
| 5.18 | ED50 | 6615 | nM | CHEMBL3752910 |
| 5.16 | IC50 | 7000 | nM | CHEMBL4109308 |
| 5.13 | IC50 | 7400 | nM | CHLORAMPHENICOL SULFATE SALT |
| 5.09 | IC50 | 8040 | nM | CHEMBL4128250 |
| 5.08 | IC50 | 8370 | nM | CHEMBL4128250 |
| 5.03 | IC50 | 9320 | nM | CHEMBL4127016 |
| 5.03 | IC50 | 9240 | nM | CHEMBL4128560 |
PubChem BioAssay actives
47 with measured affinity, of 209 total; 27 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| N-(3-chloro-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-4-(triazolo[4,5-b]pyridin-3-yl)benzamide | 1585498: Binding affinity to 80S ribosome in human HuH7 cells expressing human C-terminal V5/6-His-tagged PCSK9 assessed as inhibition of PCSK9 secretion after 16 to 24 hrs by AlphaLISA method | ic50 | 0.3000 | uM |
| N-(3-chloro-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-3-[4-(triazolo[4,5-b]pyridin-3-yl)phenyl]propanamide | 1532845: Binding affinity to 80S ribosome in human HuH7 cells harboring human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.3800 | uM |
| N-isoquinolin-1-yl-N-[(3R)-piperidin-3-yl]-4-(triazolo[4,5-b]pyridin-3-yl)benzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.3900 | uM |
| N-(3-chloro-2-pyridinyl)-4-(6-methyltriazolo[4,5-b]pyridin-3-yl)-N-[(3R)-piperidin-3-yl]benzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.4100 | uM |
| N-(3-chloro-2-pyridinyl)-4-(5-methyltriazolo[4,5-b]pyridin-3-yl)-N-[(3R)-piperidin-3-yl]benzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.4500 | uM |
| N-(1-methylpyrrolo[2,3-c]pyridin-7-yl)-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 0.5000 | uM |
| N-isoquinolin-1-yl-N-[(3R)-piperidin-3-yl]-4-pyrazolo[1,5-a]pyrimidin-3-ylbenzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.6900 | uM |
| N-(3-chloro-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-5-(triazolo[4,5-b]pyridin-3-yl)pyridine-2-carboxamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.7100 | uM |
| N-(3-chloro-2-pyridinyl)-3-[5-(6-methyltriazolo[4,5-b]pyridin-3-yl)-2-pyridinyl]-N-[(3R)-piperidin-3-yl]propanamide | 1532845: Binding affinity to 80S ribosome in human HuH7 cells harboring human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.8500 | uM |
| N-(3-chloro-2-pyridinyl)-5-(6-methyltriazolo[4,5-b]pyridin-3-yl)-N-[(3R)-piperidin-3-yl]pyridine-2-carboxamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.8500 | uM |
| N-(3-methyl-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-4-pyrazolo[1,5-a]pyrimidin-3-ylpiperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 0.9200 | uM |
| N-isoquinolin-1-yl-4-(1-methylpyrazol-4-yl)-N-[(3R)-piperidin-3-yl]benzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 1.0600 | uM |
| N-isoquinolin-1-yl-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 1.5400 | uM |
| N-(3-methyl-2-pyridinyl)-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532845: Binding affinity to 80S ribosome in human HuH7 cells harboring human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 2.0500 | uM |
| N-(3-chloro-2-pyridinyl)-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 2.0800 | uM |
| N-(5,8-dihydroisoquinolin-1-yl)-3-(4-methoxyphenyl)-N-[(3R)-piperidin-3-yl]propanamide | 1584424: Inhibition of human 80S ribosome-mediated PCSK9 translation expressed in CHO-K1 cells assessed as reduction in PCSK9 secretion | ec50 | 2.2000 | uM |
| N-isoquinolin-1-yl-3-(4-methoxyphenyl)-N-[(3R)-piperidin-3-yl]propanamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 2.6300 | uM |
| N-(3-chloro-2-pyridinyl)-4-(6-methylpyrazin-2-yl)-N-[(3R)-piperidin-3-yl]benzamide | 1497963: Binding affinity to 80S ribosome in human HuH7 cells assessed as inhibition of PCSK9 mRNA translation after overnight incubation by ELISA | ic50 | 2.8200 | uM |
| N-(3-chloro-2-pyridinyl)-4-[6-(dimethylamino)pyrazin-2-yl]-N-[(3R)-piperidin-3-yl]benzamide | 1497963: Binding affinity to 80S ribosome in human HuH7 cells assessed as inhibition of PCSK9 mRNA translation after overnight incubation by ELISA | ic50 | 2.9700 | uM |
| N-(3-chloro-2-pyridinyl)-4-[6-(methylamino)pyrazin-2-yl]-N-[(3R)-piperidin-3-yl]benzamide | 1497963: Binding affinity to 80S ribosome in human HuH7 cells assessed as inhibition of PCSK9 mRNA translation after overnight incubation by ELISA | ic50 | 3.0800 | uM |
| N-isoquinolin-1-yl-4-(6-methyl-1,2-benzoxazol-3-yl)-N-[(3R)-piperidin-3-yl]piperazine-1-carboxamide | 1532845: Binding affinity to 80S ribosome in human HuH7 cells harboring human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 3.5000 | uM |
| N-(3-methylpyrazin-2-yl)-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 3.6300 | uM |
| N-(3-chloro-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-6-(triazolo[4,5-b]pyridin-3-yl)pyridine-3-carboxamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 4.1000 | uM |
| N-isoquinolin-1-yl-N-[(3R)-piperidin-3-yl]-4-pyrazin-2-ylbenzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 4.3000 | uM |
| 4-(2-fluorophenyl)-N-(3-methyl-2-pyridinyl)-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 4.3800 | uM |
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149247: Binding affinity to human RPL17 incubated for 45 mins by Kinobead based pull down assay | kd | 6.6146 | uM |
| 2,2-dichloro-N-[(1R,2R)-1,3-dihydroxy-1-(4-nitrophenyl)propan-2-yl]acetamide;sulfuric acid | 717551: Inhibition of mitochondrial ribosome-mediated protein synthesis in human HeLa cells assessed as {35S]methionine incorporation by autoradiography | ic50 | 7.4000 | uM |
CTD chemical–gene interactions
65 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | affects cotreatment, increases methylation, decreases expression, affects expression | 5 |
| sodium arsenite | increases activity, decreases expression | 3 |
| Air Pollutants | affects cotreatment, increases abundance, increases oxidation, decreases expression | 3 |
| bisphenol F | increases expression, affects cotreatment, decreases expression | 2 |
| methacrylaldehyde | affects cotreatment, increases oxidation, increases abundance | 2 |
| bisphenol S | decreases methylation, increases expression | 2 |
| Arsenic Trioxide | decreases expression, increases expression | 2 |
| Acrolein | affects cotreatment, increases oxidation, increases abundance | 2 |
| Caffeine | decreases phosphorylation, increases expression | 2 |
| Doxorubicin | affects expression, decreases expression | 2 |
| Ozone | affects cotreatment, increases oxidation, increases abundance | 2 |
| Smoke | decreases expression, increases abundance | 2 |
| FR900359 | decreases phosphorylation | 1 |
| TAK-243 | increases sumoylation | 1 |
| methylmercuric chloride | increases expression | 1 |
| alpha-pinene | affects cotreatment, increases oxidation, increases abundance | 1 |
| deoxynivalenol | increases expression | 1 |
| sodium arsenate | decreases expression | 1 |
| arsenite | affects binding, increases reaction | 1 |
| 2-bromopalmitate | decreases reaction, increases abundance, increases palmitoylation | 1 |
| perfluorooctanoic acid | increases expression | 1 |
| epigallocatechin gallate | increases expression | 1 |
| arsenic disulfide | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| azoxystrobin | increases expression | 1 |
| chloropicrin | decreases expression | 1 |
| deguelin | increases expression | 1 |
| calfactant | affects cotreatment, increases expression | 1 |
| fenpyroximate | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | decreases expression, affects cotreatment | 1 |
ChEMBL screening assays
90 unique, capped per target: 90 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1920845 | Binding | Induction of ribosome to readthrough in human A-T lymphoblastoid cells assessed as ATM ser1981 autophosphorylation at 30 uM after 4 days by PTT-ELISA assay | Synthesis and evaluation of compounds that induce readthrough of premature termination codons. — Bioorg Med Chem Lett |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00347867 | PHASE4 | UNKNOWN | Viagra for the Treatment of IUGR |
| NCT00909974 | PHASE4 | COMPLETED | Effect of Prenatal Nutritional Supplementation on Birth Outcome in Hounde District, Burkina Faso |
| NCT01352234 | PHASE4 | COMPLETED | Comparison of Doses of Acetylsalicylic Acid in Women With Previous History of Preeclampsia |
| NCT01390051 | PHASE4 | COMPLETED | Can Low Molecular Weight Heparin During Pregnancy With Intrauterine Growth Restriction Increase Birth Weight? |
| NCT01695070 | PHASE4 | COMPLETED | Melatonin to Prevent Brain Injury in Unborn Growth Restricted Babies |
| NCT03674606 | PHASE4 | COMPLETED | Trial of Early Screening Test for Pre-eclampsia and Growth Restriction |
| NCT04051567 | PHASE4 | UNKNOWN | Low-dose Aspirin for Prevention of Adverse Pregnancy Outcomes in Twin Pregnancies |
| NCT05029778 | PHASE4 | UNKNOWN | Arginine + Citrulline as a Supplement for Weight Gain in Fetus With a Decrease in Their Growth Curve |
| NCT05800938 | PHASE4 | COMPLETED | The Effect of Oral Isosorbide Mononitrate Therapy on Umbilical Artery Doppler Resistance Index in Pregnancies With Intrauterine Growth Restriction: Prospective Randomized Control Trial |
| NCT07171086 | PHASE4 | NOT_YET_RECRUITING | AI-POCUS for Maternal and Neonatal Health in Ethiopia |
| NCT00211796 | PHASE4 | COMPLETED | Divalproex Sodium ER in Adult Autism |
| NCT00391261 | PHASE4 | COMPLETED | An Open-label Trial of Metformin for Weight Control of Pediatric Patients on Antipsychotic Medications. |
| NCT00409747 | PHASE4 | COMPLETED | Minocycline to Treat Childhood Regressive Autism |
| NCT00576732 | PHASE4 | COMPLETED | A Study of the Effectiveness and Safety of Two Doses of Risperidone in the Treatment of Children and Adolescents With Autistic Disorder |
| NCT00844753 | PHASE4 | COMPLETED | Atomoxetine, Placebo and Parent Management Training in Autism |
| NCT01028820 | PHASE4 | COMPLETED | FMRI Brain Activation of Aripiprazole Treatment in Autism Spectrum Disorders |
| NCT01098383 | PHASE4 | UNKNOWN | Treatment With Acetyl-Choline Esterase Inhibitors in Children With Autism Spectrum Disorders |
| NCT01333865 | PHASE4 | COMPLETED | A Study of Memantine Hydrochloride (Namenda®) for Cognitive and Behavioral Impairment in Adults With Autism Spectrum Disorders |
| NCT01337700 | PHASE4 | COMPLETED | Milnacipran in Autism and the Functional Locus Coeruleus and Noradrenergic Model of Autism |
| NCT01695200 | PHASE4 | COMPLETED | Omega-3 Fatty Acids in Autism Spectrum Disorders |
| NCT02069977 | PHASE4 | UNKNOWN | Study to Evaluate the Efficacy and Safety of Aripiprazole |
| NCT02096952 | PHASE4 | COMPLETED | Methylphenidate ER Liquid Formulation in Adults With ASD and ADHD |
| NCT02199925 | PHASE4 | UNKNOWN | An Open-Label Study to Evaluate the Efficacy of High-Dose Gammaplex in Children on the Autism Spectrum |
| NCT02235467 | PHASE4 | COMPLETED | Multisite Study: Parental Training Using Video Modelling to Develop Social Skills in Children With Autism |
| NCT02255565 | PHASE4 | COMPLETED | Dose Response Effects of Quillivant XR in Children With ADHD and Autism: A Pilot Study |
| NCT02940574 | PHASE4 | COMPLETED | Neural and Behavioral Effects of Oxytocin in Autism Spectrum Disorders |
| NCT03333629 | PHASE4 | COMPLETED | Promoting Positive Outcomes for Individuals With ASD: Linking Early Detection, Treatment, and Long-term Outcomes |
| NCT03337646 | PHASE4 | COMPLETED | Evaluation of the Effect and Safety of Lisdexamfetamine in Children Aged 6-12 With ADHD and Autism |
| NCT03538431 | PHASE4 | COMPLETED | Improving Driving in Young People With Autism Spectrum Disorders |
| NCT03757585 | PHASE4 | COMPLETED | Natural Treatments for the Management of Emotional Dysregulation in Youth With Non-verbal Learning Disability (NVLD) and/or Autism Spectrum Disorders (ASD) |
| NCT04903353 | PHASE4 | COMPLETED | Pragmatic Trial Comparing Weight Gain in Children With Autism Taking Risperidone Versus Aripiprazole |
| NCT05063656 | PHASE4 | COMPLETED | Biomarker-Driven Pharmacological Treatment of Adolescents With Autism Spectrum Disorder With Gabapentin |
| NCT05146245 | PHASE4 | UNKNOWN | Safety and Pharmacokinetics of Antipsychotics in Children 2: Studying TDM in an RCT |
| NCT05916339 | PHASE4 | RECRUITING | AWARE: Management of ADHD in Autism Spectrum Disorder |
| NCT05954052 | PHASE4 | TERMINATED | A Study of Glutathione in Children With Autism Spectrum Disorder |
| NCT06853665 | PHASE4 | RECRUITING | The TEAM Study - Treatment Efficacy for Autism/Attention Using Mixed Amphetamine |
| NCT07054697 | PHASE4 | COMPLETED | Pilot-RCT With Individualized Homeopathic Treatment in the Children With Autism Spectrum Disorder |
| NCT07161804 | PHASE4 | COMPLETED | Pilot RCT Using Homeopathic Medicines in ASD |
| NCT07439042 | PHASE4 | NOT_YET_RECRUITING | Buspirone for Anxiety in Autistic Youth |
| NCT00000597 | PHASE3 | COMPLETED | Multi-Center Trial of Anti-Thymocyte Globulin in Treatment of Aplastic Anemia and Other Hematologic Disorders |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): attention deficit-hyperactivity disorder, autism, chronic obstructive pulmonary disease, fetal growth restriction, macrocytic anemia, pancytopenia