RPL18
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Also known as L18eL18
Summary
RPL18 (ribosomal protein L18, HGNC:10310) is a protein-coding gene on chromosome 19q13.33, encoding Large ribosomal subunit protein eL18 (Q07020). Component of the large ribosomal subunit. It is a common-essential gene (DepMap: required in 99.8% of cancer cell lines).
Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a member of the L18E family of ribosomal proteins that is a component of the 60S subunit. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene.
Source: NCBI Gene 6141 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Diamond-Blackfan anemia 18 (Moderate, GenCC) — +1 more curated relationship
- GWAS associations: 5
- Clinical variants (ClinVar): 144 total — 1 likely-pathogenic
- Phenotypes (HPO): 62
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- Cancer dependency (DepMap): dependent in 99.8% of screened cell lines (common-essential)
- MANE Select transcript:
NM_000979
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:10310 |
| Approved symbol | RPL18 |
| Name | ribosomal protein L18 |
| Location | 19q13.33 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | L18, eL18 |
| Ensembl gene | ENSG00000063177 |
| Ensembl biotype | protein_coding |
| OMIM | 604179 |
| Entrez | 6141 |
Gene structure
Transcript identifiers
Ensembl transcripts: 29 — 20 protein_coding, 7 retained_intron, 1 non_stop_decay, 1 nonsense_mediated_decay
ENST00000084795, ENST00000546623, ENST00000547892, ENST00000547897, ENST00000549273, ENST00000549370, ENST00000549533, ENST00000549920, ENST00000550645, ENST00000550671, ENST00000550973, ENST00000551749, ENST00000552347, ENST00000552588, ENST00000552705, ENST00000552851, ENST00000901609, ENST00000919793, ENST00000919794, ENST00000919795, ENST00000919796, ENST00000919797, ENST00000919798, ENST00000919799, ENST00000919800, ENST00000919801, ENST00000919802, ENST00000919803, ENST00000950806
RefSeq mRNA: 2 — MANE Select: NM_000979
NM_000979, NM_001270490
CCDS: CCDS12726, CCDS58669
Canonical transcript exons
ENST00000549920 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002365211 | 48619141 | 48619178 |
| ENSE00003473433 | 48616079 | 48616202 |
| ENSE00003479382 | 48616726 | 48616824 |
| ENSE00003572556 | 48615877 | 48615946 |
| ENSE00003627949 | 48615331 | 48615447 |
| ENSE00003675917 | 48617791 | 48617877 |
| ENSE00003689442 | 48617316 | 48617423 |
Expression profiles
Bgee: expression breadth ubiquitous, 304 present calls, max score 99.95.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 487.0301 / max 3911.9327, expressed in 1827 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 181878 | 481.0164 | 1827 |
| 181874 | 2.3242 | 919 |
| 181877 | 1.5036 | 985 |
| 181876 | 1.0599 | 694 |
| 181875 | 0.7166 | 398 |
| 181873 | 0.4095 | 215 |
Top tissues by expression
304 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| nipple | UBERON:0002030 | 99.95 | gold quality |
| penis | UBERON:0000989 | 99.94 | gold quality |
| adult organism | UBERON:0007023 | 99.92 | gold quality |
| skin of hip | UBERON:0001554 | 99.90 | gold quality |
| upper leg skin | UBERON:0004262 | 99.90 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 99.89 | gold quality |
| urethra | UBERON:0000057 | 99.88 | gold quality |
| right uterine tube | UBERON:0001302 | 99.87 | gold quality |
| mammalian vulva | UBERON:0000997 | 99.86 | gold quality |
| pylorus | UBERON:0001166 | 99.86 | gold quality |
| left ovary | UBERON:0002119 | 99.86 | gold quality |
| right ovary | UBERON:0002118 | 99.85 | gold quality |
| upper arm skin | UBERON:0004263 | 99.85 | gold quality |
| oral cavity | UBERON:0000167 | 99.84 | gold quality |
| cardia of stomach | UBERON:0001162 | 99.84 | gold quality |
| superficial temporal artery | UBERON:0001614 | 99.84 | gold quality |
| cartilage tissue | UBERON:0002418 | 99.84 | gold quality |
| superior surface of tongue | UBERON:0007371 | 99.84 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 99.83 | gold quality |
| skin of leg | UBERON:0001511 | 99.83 | gold quality |
| trachea | UBERON:0003126 | 99.83 | gold quality |
| caput epididymis | UBERON:0004358 | 99.83 | gold quality |
| corpus epididymis | UBERON:0004359 | 99.83 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 99.83 | gold quality |
| pituitary gland | UBERON:0000007 | 99.82 | gold quality |
| zone of skin | UBERON:0000014 | 99.82 | gold quality |
| skin of abdomen | UBERON:0001416 | 99.82 | gold quality |
| adenohypophysis | UBERON:0002196 | 99.82 | gold quality |
| colonic mucosa | UBERON:0000317 | 99.81 | gold quality |
| ovary | UBERON:0000992 | 99.81 | gold quality |
Single-cell (SCXA)
Detected in 27 experiment(s), a significant marker in 11.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-122 | yes | 103.22 |
| E-CURD-88 | yes | 65.00 |
| E-MTAB-9221 | yes | 54.33 |
| E-MTAB-9067 | yes | 27.73 |
| E-CURD-112 | yes | 27.47 |
| E-HCAD-9 | yes | 23.94 |
| E-MTAB-10042 | yes | 16.10 |
| E-MTAB-9543 | yes | 14.88 |
| E-GEOD-135922 | yes | 12.09 |
| E-HCAD-35 | yes | 9.51 |
| E-MTAB-11121 | no | 5844.71 |
| E-MTAB-8410 | no | 5635.13 |
| E-MTAB-10283 | no | 4580.76 |
| E-CURD-79 | no | 4482.48 |
| E-MTAB-8530 | no | 4383.97 |
Regulation
Is transcription factor: no
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 99.8% of screened cell lines, common-essential.
Literature-anchored findings (GeneRIF, showing 2)
- Silencing of the RPL-18 does not affect cell translation efficiency or viability, but it reduces significantly viral translation, replication and viral yield, suggesting that the RPL-18 is required during the Dengue virus replicative cycle. (PMID:26092250)
- Decreased expression of RPL15 and RPL18 exacerbated the calcification of valve interstitial cells during aortic valve calcification. (PMID:37431269)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | rpl18 | ENSDARG00000029533 |
| drosophila_melanogaster | RpL18 | FBGN0035753 |
| caenorhabditis_elegans | WBGENE00004430 |
Protein
Protein identifiers
Large ribosomal subunit protein eL18 — Q07020 (reviewed: Q07020)
Alternative names: 60S ribosomal protein L18
All UniProt accessions (8): Q07020, A0A075B7A0, F8VUA6, F8VXR6, F8VYV2, G3V203, H0YHA7, J3QQ67
UniProt curated annotations — full annotation on UniProt →
Function. Component of the large ribosomal subunit. The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell.
Subunit / interactions. Component of the large ribosomal subunit.
Subcellular location. Cytoplasm. Cytosol. Rough endoplasmic reticulum.
Disease relevance. Diamond-Blackfan anemia 18 (DBA18) [MIM:618310] A form of Diamond-Blackfan anemia, a congenital non-regenerative hypoplastic anemia that usually presents early in infancy. Diamond-Blackfan anemia is characterized by a moderate to severe macrocytic anemia, erythroblastopenia, and an increased risk of malignancy. 30 to 40% of Diamond-Blackfan anemia patients present with short stature and congenital anomalies, the most frequent being craniofacial (Pierre-Robin syndrome and cleft palate), thumb and urogenital anomalies. DBA18 inheritance is autosomal dominant. The disease may be caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the eukaryotic ribosomal protein eL18 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q07020-1 | 1 | yes |
| Q07020-2 | 2 |
RefSeq proteins (2): NP_000970, NP_001257419 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000039 | Ribosomal_eL18 | Family |
| IPR021131 | Ribosomal_uL15/eL18 | Domain |
| IPR021132 | Ribosomal_eL18/eL18-A/B/_CS | Conserved_site |
| IPR036227 | Ribosomal_uL15/eL18_sf | Homologous_superfamily |
Pfam: PF17135
UniProt features (12 total): compositionally biased region 2, modified residue 2, cross-link 2, initiator methionine 1, chain 1, sequence variant 1, sequence conflict 1, region of interest 1, splice variant 1
Structure
Experimental structures (PDB)
196 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8A3D | ELECTRON MICROSCOPY | 1.67 |
| 8GLP | ELECTRON MICROSCOPY | 1.67 |
| 8QYX | ELECTRON MICROSCOPY | 1.78 |
| 8QOI | ELECTRON MICROSCOPY | 1.9 |
| 9O3W | ELECTRON MICROSCOPY | 1.9 |
| 8YOO | ELECTRON MICROSCOPY | 2 |
| 9C3H | ELECTRON MICROSCOPY | 2 |
| 9I2D | ELECTRON MICROSCOPY | 2.19 |
| 9PBE | ELECTRON MICROSCOPY | 2.19 |
| 8QFD | ELECTRON MICROSCOPY | 2.2 |
| 8YOP | ELECTRON MICROSCOPY | 2.2 |
| 9GUL | ELECTRON MICROSCOPY | 2.2 |
| 9O3V | ELECTRON MICROSCOPY | 2.2 |
| 9O3Y | ELECTRON MICROSCOPY | 2.2 |
| 8JDK | ELECTRON MICROSCOPY | 2.26 |
| 8G5Y | ELECTRON MICROSCOPY | 2.29 |
| 9S3D | ELECTRON MICROSCOPY | 2.32 |
| 9RPV | ELECTRON MICROSCOPY | 2.35 |
| 9S3B | ELECTRON MICROSCOPY | 2.38 |
| 7OW7 | ELECTRON MICROSCOPY | 2.4 |
| 8K2C | ELECTRON MICROSCOPY | 2.4 |
| 8XSX | ELECTRON MICROSCOPY | 2.4 |
| 9SPF | ELECTRON MICROSCOPY | 2.4 |
| 9SPI | ELECTRON MICROSCOPY | 2.4 |
| 8JDL | ELECTRON MICROSCOPY | 2.42 |
| 9S3C | ELECTRON MICROSCOPY | 2.42 |
| 8FKV | ELECTRON MICROSCOPY | 2.47 |
| 9QLO | ELECTRON MICROSCOPY | 2.47 |
| 8FLE | ELECTRON MICROSCOPY | 2.48 |
| 9P8B | ELECTRON MICROSCOPY | 2.48 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q07020-F1 | 95.51 | 0.96 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (4): 130, 158, 119, 164
Function
Pathways and Gene Ontology
Reactome pathways
17 pathways
| ID | Pathway |
|---|---|
| R-HSA-156827 | L13a-mediated translational silencing of Ceruloplasmin expression |
| R-HSA-156902 | Peptide chain elongation |
| R-HSA-1799339 | SRP-dependent cotranslational protein targeting to membrane |
| R-HSA-192823 | Viral mRNA Translation |
| R-HSA-2408557 | Selenocysteine synthesis |
| R-HSA-6791226 | Major pathway of rRNA processing in the nucleolus and cytosol |
| R-HSA-72689 | Formation of a pool of free 40S subunits |
| R-HSA-72706 | GTP hydrolysis and joining of the 60S ribosomal subunit |
| R-HSA-72764 | Eukaryotic Translation Termination |
| R-HSA-9010553 | Regulation of expression of SLITs and ROBOs |
| R-HSA-9633012 | Response of EIF2AK4 (GCN2) to amino acid deficiency |
| R-HSA-975956 | Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) |
| R-HSA-975957 | Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) |
| R-HSA-9918481 | Dengue Virus-Host Interactions |
| R-HSA-9954709 | Ribosome Quality Control (RQC) complex extracts and degrades nascent peptide |
| R-HSA-9954714 | PELO:HBS1L and ABCE1 dissociate a ribosome on a non-stop mRNA |
| R-HSA-9954716 | ZNF598 and the Ribosome-associated Quality Trigger (RQT) complex dissociate a ribosome stalled on a no-go mRNA |
MSigDB gene sets: 422 (showing top):
GOBP_CYTOPLASMIC_TRANSLATION, MODULE_151, ENK_UV_RESPONSE_KERATINOCYTE_UP, GCM_NPM1, STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN, MORF_UBE2I, GOBP_STRIATED_MUSCLE_CELL_DIFFERENTIATION, HSIAO_HOUSEKEEPING_GENES, GOBP_MALE_GAMETE_GENERATION, GOBP_NEGATIVE_REGULATION_OF_CELLULAR_COMPONENT_ORGANIZATION, GOBP_TRANSLATION, GOBP_MUSCLE_STRUCTURE_DEVELOPMENT, GOBP_MUSCLE_CONTRACTION, MORF_CCNI, MODULE_285
GO Biological Process (2): cytoplasmic translation (GO:0002181), translation (GO:0006412)
GO Molecular Function (3): RNA binding (GO:0003723), structural constituent of ribosome (GO:0003735), protein binding (GO:0005515)
GO Cellular Component (12): nucleus (GO:0005634), nucleolus (GO:0005730), cytoplasm (GO:0005737), endoplasmic reticulum (GO:0005783), rough endoplasmic reticulum (GO:0005791), cytosol (GO:0005829), focal adhesion (GO:0005925), membrane (GO:0016020), cytosolic large ribosomal subunit (GO:0022625), cytosolic ribosome (GO:0022626), ribosome (GO:0005840), ribonucleoprotein complex (GO:1990904)
Reactome top-level categories
Rollup of top-12 pathways:
| Category | Pathways |
|---|---|
| Ribosome-associated quality control | 3 |
| Translation | 2 |
| Cap-dependent Translation Initiation | 2 |
| Nonsense-Mediated Decay (NMD) | 2 |
| Eukaryotic Translation Initiation | 1 |
| Eukaryotic Translation Elongation | 1 |
| Influenza Viral RNA Transcription and Replication | 1 |
| Selenoamino acid metabolism | 1 |
| rRNA processing in the nucleus and cytosol | 1 |
| Signaling by ROBO receptors | 1 |
| Cellular response to starvation | 1 |
| Dengue Virus Infection | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| ribosome | 2 |
| intracellular membrane-bounded organelle | 2 |
| intracellular membraneless organelle | 2 |
| cytoplasm | 2 |
| translation | 1 |
| peptidyltransferase activity | 1 |
| translational initiation | 1 |
| translational elongation | 1 |
| translational termination | 1 |
| macromolecule biosynthetic process | 1 |
| protein metabolic process | 1 |
| protein biosynthetic process | 1 |
| nucleic acid binding | 1 |
| structural molecule activity | 1 |
| binding | 1 |
| nuclear lumen | 1 |
| intracellular anatomical structure | 1 |
| endomembrane system | 1 |
| endoplasmic reticulum | 1 |
| cell-substrate junction | 1 |
| large ribosomal subunit | 1 |
| cytosolic ribosome | 1 |
| cytosol | 1 |
| protein-containing complex | 1 |
Protein interactions and networks
STRING
3602 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RPL18 | RPS25 | P25111 | 791 |
| RPL18 | RPL3 | P39023 | 786 |
| RPL18 | RPL27 | P08526 | 780 |
| RPL18 | RPL12 | P30050 | 778 |
| RPL18 | RPL28 | P46779 | 776 |
| RPL18 | RPSA | P08865 | 766 |
| RPL18 | RPL15 | P39030 | 760 |
| RPL18 | RPS10 | P46783 | 741 |
| RPL18 | RPLP0 | P05388 | 740 |
| RPL18 | RPL4 | P36578 | 736 |
| RPL18 | RPS19 | P39019 | 731 |
| RPL18 | RPL5 | P46777 | 724 |
| RPL18 | RPL14 | P50914 | 717 |
| RPL18 | RPL6 | Q02878 | 717 |
| RPL18 | RPS3 | P23396 | 715 |
| RPL18 | RPS8 | P09058 | 715 |
IntAct
281 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MAP3K14 | CHUK | psi-mi:“MI:0914”(association) | 0.950 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| RPL4 | RPL18 | psi-mi:“MI:0915”(physical association) | 0.670 |
| FAM90A1 | KPNA3 | psi-mi:“MI:0914”(association) | 0.670 |
| INAVA | CYTH3 | psi-mi:“MI:0914”(association) | 0.640 |
| RACK1 | RPS17 | psi-mi:“MI:0915”(physical association) | 0.610 |
| HTT | RPL18 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ATXN1 | RPL18 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MECP2 | GTPBP10 | psi-mi:“MI:0914”(association) | 0.530 |
| RPL37A | MPHOSPH10 | psi-mi:“MI:0914”(association) | 0.530 |
| RPL18 | NOP56 | psi-mi:“MI:0914”(association) | 0.530 |
BioGRID (839): RPL18 (Affinity Capture-MS), RPL18 (Affinity Capture-MS), RPL18 (Affinity Capture-MS), RPL18 (Affinity Capture-MS), RPL18 (Affinity Capture-MS), RPL18 (Affinity Capture-MS), RPL18 (Affinity Capture-MS), RPL18 (Affinity Capture-MS), RPL18 (Affinity Capture-MS), RPL18 (Affinity Capture-MS), HNRNPU (Co-fractionation), HNRNPUL2 (Co-fractionation), PABPC1 (Co-fractionation), PABPC4 (Co-fractionation), RPL10 (Co-fractionation)
ESM2 similar proteins: D0VWQ3, G1T6D1, G1TFE0, G1U7L1, P02412, P09897, P12001, P17702, P35980, P40590, P41098, P41105, P46779, P61367, P61368, P61369, P62829, P62830, P62831, P62832, P69090, P69091, Q07020, Q08200, Q3T057, Q3T0L7, Q4R5H8, Q5E973, Q5REU2, Q6P1L8, Q6PC14, Q6QMZ8, Q7T2N4, Q7T2N5, Q7T3M9, Q7T3N1, Q7T3N2, Q7T3N3, Q7T3N4, Q7T3N6
Diamond homologs: A0A1D8PK43, A3F4S0, A7IAH4, B6YSQ4, D0VWQ3, G1TFE0, O22254, O45946, O59302, O65729, P02412, P09897, P0CX49, P0CX50, P0DJ17, P12001, P24558, P35980, P42791, P50885, P54022, P69090, P69091, Q07020, Q0PXY6, Q10192, Q1HR62, Q2FTA2, Q2M0G4, Q4DZP2, Q4GXG7, Q4N438, Q4PM04, Q4QG98, Q4R5H8, Q4UFD5, Q54VZ4, Q56FG8, Q5E973, Q5UAS1
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| RPL18 | “form complex” | “60S cytosolic large ribosomal subunit” | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 206 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| TRAF6 mediated NF-kB activation | 5 | 15.1× | 7e-04 |
| SRP-dependent cotranslational protein targeting to membrane | 21 | 13.9× | 1e-15 |
| Peptide chain elongation | 16 | 13.4× | 4e-12 |
| Viral mRNA Translation | 16 | 13.4× | 4e-12 |
| PELO:HBS1L and ABCE1 dissociate a ribosome on a non-stop mRNA | 16 | 13.3× | 4e-12 |
| Selenocysteine synthesis | 16 | 12.7× | 7e-12 |
| Eukaryotic Translation Termination | 16 | 12.7× | 7e-12 |
| Formation of a pool of free 40S subunits | 17 | 12.6× | 3e-12 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| stress granule assembly | 6 | 19.8× | 1e-04 |
| cytoplasmic translation | 19 | 19.3× | 2e-16 |
| ribosomal large subunit biogenesis | 7 | 17.1× | 5e-05 |
| translational initiation | 6 | 11.8× | 1e-03 |
| intrinsic apoptotic signaling pathway | 6 | 11.8× | 1e-03 |
| translation | 18 | 10.2× | 1e-10 |
| rRNA processing | 13 | 10.1× | 2e-07 |
| ribosomal small subunit biogenesis | 8 | 10.0× | 3e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
144 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 1 |
| Uncertain significance | 54 |
| Likely benign | 60 |
| Benign | 18 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 617666 | NM_000979.4(RPL18):c.152T>C (p.Leu51Ser) | Likely pathogenic |
SpliceAI
689 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:48615869:ATACT:A | donor_loss | 1.0000 |
| 19:48615871:ACT:A | donor_loss | 1.0000 |
| 19:48615872:CTC:C | donor_loss | 1.0000 |
| 19:48615872:CTCA:C | donor_gain | 1.0000 |
| 19:48615873:TCA:T | donor_loss | 1.0000 |
| 19:48615874:CA:C | donor_loss | 1.0000 |
| 19:48615875:A:AC | donor_gain | 1.0000 |
| 19:48615875:ACT:A | donor_loss | 1.0000 |
| 19:48615876:C:CC | donor_gain | 1.0000 |
| 19:48615876:CT:C | donor_gain | 1.0000 |
| 19:48615876:CTT:C | donor_gain | 1.0000 |
| 19:48615876:CTTG:C | donor_gain | 1.0000 |
| 19:48615876:CTTGG:C | donor_gain | 1.0000 |
| 19:48615942:AGGAC:A | acceptor_gain | 1.0000 |
| 19:48615943:GGAC:G | acceptor_gain | 1.0000 |
| 19:48615944:GAC:G | acceptor_gain | 1.0000 |
| 19:48615944:GACCT:G | acceptor_gain | 1.0000 |
| 19:48615945:AC:A | acceptor_gain | 1.0000 |
| 19:48615945:ACCT:A | acceptor_gain | 1.0000 |
| 19:48615946:CC:C | acceptor_gain | 1.0000 |
| 19:48615947:C:CC | acceptor_gain | 1.0000 |
| 19:48615947:C:T | acceptor_gain | 1.0000 |
| 19:48616074:CTCA:C | donor_loss | 1.0000 |
| 19:48616075:TCAC:T | donor_loss | 1.0000 |
| 19:48616076:CAC:C | donor_loss | 1.0000 |
| 19:48616077:A:AC | donor_gain | 1.0000 |
| 19:48616077:AC:A | donor_gain | 1.0000 |
| 19:48616077:ACCGG:A | donor_loss | 1.0000 |
| 19:48616078:C:CT | donor_gain | 1.0000 |
| 19:48616078:CC:C | donor_gain | 1.0000 |
AlphaMissense
1199 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 19:48615912:G:C | F152L | 1.000 |
| 19:48615912:G:T | F152L | 1.000 |
| 19:48615914:A:G | F152L | 1.000 |
| 19:48615404:C:G | G179R | 0.999 |
| 19:48615405:T:A | R178S | 0.999 |
| 19:48615405:T:G | R178S | 0.999 |
| 19:48615406:C:A | R178I | 0.999 |
| 19:48615406:C:G | R178T | 0.999 |
| 19:48615417:G:C | F174L | 0.999 |
| 19:48615417:G:T | F174L | 0.999 |
| 19:48615419:A:G | F174L | 0.999 |
| 19:48615428:C:G | G171R | 0.999 |
| 19:48615898:C:T | G157E | 0.999 |
| 19:48615899:C:G | G157R | 0.999 |
| 19:48615899:C:T | G157R | 0.999 |
| 19:48615946:C:T | G141D | 0.999 |
| 19:48616079:C:G | G141R | 0.999 |
| 19:48616090:A:T | V137D | 0.999 |
| 19:48616120:G:T | A127D | 0.999 |
| 19:48616123:A:G | L126P | 0.999 |
| 19:48616195:G:T | A102E | 0.999 |
| 19:48616766:A:T | I86K | 0.999 |
| 19:48616772:C:T | G84E | 0.999 |
| 19:48616773:C:A | G84W | 0.999 |
| 19:48616773:C:G | G84R | 0.999 |
| 19:48616773:C:T | G84R | 0.999 |
| 19:48616781:A:T | V81E | 0.999 |
| 19:48617362:A:G | L51S | 0.999 |
| 19:48617365:C:A | R50M | 0.999 |
| 19:48617410:A:G | L35P | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000516718 (19:48618471 C>A,T), RS1001216090 (19:48617562 G>A), RS1001586851 (19:48618259 GCAATACTACTAGAACCA>G), RS1002111853 (19:48620760 C>A,T), RS1002227476 (19:48614911 G>A,T), RS1002488838 (19:48620970 C>G,T), RS1002691834 (19:48618148 A>C), RS1003223107 (19:48615353 A>G), RS1003300202 (19:48620827 G>C), RS1003395168 (19:48620508 C>T), RS1003753390 (19:48619759 T>G), RS1004113506 (19:48618813 T>A), RS1005906488 (19:48616953 C>T), RS1005957960 (19:48621092 ATT>A), RS1007203189 (19:48621143 G>A)
Disease associations
OMIM: gene MIM:604179 | disease phenotypes: MIM:618310
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Diamond-Blackfan anemia 18 | Moderate | Autosomal dominant |
| Diamond-Blackfan anemia | Supportive | Autosomal dominant |
Mondo (2): Diamond-Blackfan anemia 18 (MONDO:0032668), Diamond-Blackfan anemia (MONDO:0015253)
Orphanet (0):
HPO phenotypes
62 total (30 of 62 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000047 | Hypospadias |
| HP:0000085 | Horseshoe kidney |
| HP:0000104 | Renal agenesis |
| HP:0000119 | Abnormality of the genitourinary system |
| HP:0000185 | Cleft soft palate |
| HP:0000218 | High palate |
| HP:0000234 | Abnormality of the head |
| HP:0000252 | Microcephaly |
| HP:0000286 | Epicanthus |
| HP:0000294 | Low anterior hairline |
| HP:0000316 | Hypertelorism |
| HP:0000347 | Micrognathia |
| HP:0000369 | Low-set ears |
| HP:0000431 | Wide nasal bridge |
| HP:0000465 | Webbed neck |
| HP:0000470 | Short neck |
| HP:0000486 | Strabismus |
| HP:0000508 | Ptosis |
| HP:0000519 | Developmental cataract |
| HP:0000912 | Sprengel anomaly |
| HP:0000980 | Pallor |
| HP:0001087 | Developmental glaucoma |
| HP:0001199 | Triphalangeal thumb |
| HP:0001227 | Abnormality of the thenar eminence |
| HP:0001254 | Lethargy |
| HP:0001510 | Growth delay |
| HP:0001518 | Small for gestational age |
| HP:0001627 | Abnormal heart morphology |
| HP:0001629 | Ventricular septal defect |
GWAS associations
5 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001241_6 | Bipolar disorder | 3.000000e-06 |
| GCST002485_8 | Elevated serum carcinoembryonic antigen levels | 7.000000e-12 |
| GCST010134_4 | Non-oily fish consumption | 3.000000e-16 |
| GCST010135_4 | Oily fish consumption | 2.000000e-16 |
| GCST010140_48 | Pork consumption | 2.000000e-16 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005760 | serum carcinoembryonic antigen measurement |
| EFO:0008111 | diet measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D029503 | Anemia, Diamond-Blackfan | C15.378.050.085.080.090; C15.378.050.750.500; C15.378.190.223.500.500.090; C16.320.077.090 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL3987582 (PROTEIN NUCLEIC-ACID COMPLEX), CHEMBL6067540 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL6067484 | GENTAMICIN SULFATE | 4 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
48 potent at pChembl≥5 of 52 total, top 47 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.97 | Kd | 107.4 | nM | CHEMBL5653589 |
| 6.97 | ED50 | 107.4 | nM | CHEMBL5653589 |
| 6.52 | IC50 | 300 | nM | CHEMBL4109308 |
| 6.42 | IC50 | 380 | nM | CHEMBL4109308 |
| 6.42 | IC50 | 380 | nM | CHEMBL4574496 |
| 6.41 | IC50 | 390 | nM | CHEMBL4126894 |
| 6.39 | IC50 | 410 | nM | CHEMBL4114159 |
| 6.35 | IC50 | 450 | nM | CHEMBL4126496 |
| 6.30 | IC50 | 500 | nM | CHEMBL4574496 |
| 6.30 | IC50 | 500 | nM | CHEMBL4560206 |
| 6.16 | IC50 | 690 | nM | CHEMBL4130157 |
| 6.15 | IC50 | 710 | nM | CHEMBL4108338 |
| 6.11 | IC50 | 780 | nM | CHEMBL4114159 |
| 6.09 | IC50 | 820 | nM | CHEMBL4109308 |
| 6.07 | IC50 | 850 | nM | CHEMBL4107559 |
| 6.07 | IC50 | 850 | nM | CHEMBL4533299 |
| 6.05 | IC50 | 900 | nM | CHEMBL4126894 |
| 6.05 | IC50 | 900 | nM | CHEMBL4126496 |
| 6.04 | IC50 | 920 | nM | CHEMBL4554909 |
| 5.97 | IC50 | 1060 | nM | CHEMBL4128388 |
| 5.89 | IC50 | 1290 | nM | CHEMBL4130157 |
| 5.86 | IC50 | 1370 | nM | CHEMBL4107559 |
| 5.84 | IC50 | 1440 | nM | CHEMBL4108338 |
| 5.81 | IC50 | 1540 | nM | CHEMBL4534859 |
| 5.76 | IC50 | 1730 | nM | CHEMBL4534859 |
| 5.69 | IC50 | 2050 | nM | CHEMBL4566239 |
| 5.68 | IC50 | 2080 | nM | CHEMBL4446635 |
| 5.66 | IC50 | 2210 | nM | CHEMBL4446635 |
| 5.66 | EC50 | 2200 | nM | CHEMBL4464929 |
| 5.64 | IC50 | 2270 | nM | CHEMBL4533299 |
| 5.63 | IC50 | 2330 | nM | CHEMBL4566239 |
| 5.62 | IC50 | 2380 | nM | CHEMBL4128388 |
| 5.58 | IC50 | 2630 | nM | CHEMBL4128250 |
| 5.55 | IC50 | 2820 | nM | CHEMBL4127458 |
| 5.53 | IC50 | 2970 | nM | CHEMBL4127311 |
| 5.51 | IC50 | 3080 | nM | CHEMBL4126072 |
| 5.46 | IC50 | 3500 | nM | CHEMBL4525277 |
| 5.44 | IC50 | 3630 | nM | CHEMBL4469712 |
| 5.39 | IC50 | 4100 | nM | CHEMBL4128560 |
| 5.37 | IC50 | 4300 | nM | CHEMBL4127016 |
| 5.36 | IC50 | 4380 | nM | CHEMBL4527910 |
| 5.16 | IC50 | 7000 | nM | CHEMBL4109308 |
| 5.13 | IC50 | 7400 | nM | CHLORAMPHENICOL SULFATE SALT |
| 5.09 | IC50 | 8040 | nM | CHEMBL4128250 |
| 5.08 | IC50 | 8370 | nM | CHEMBL4128250 |
| 5.03 | IC50 | 9320 | nM | CHEMBL4127016 |
| 5.03 | IC50 | 9240 | nM | CHEMBL4128560 |
PubChem BioAssay actives
47 with measured affinity, of 207 total; 27 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149248: Binding affinity to human RPL18 incubated for 45 mins by Kinobead based pull down assay | kd | 0.1074 | uM |
| N-(3-chloro-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-4-(triazolo[4,5-b]pyridin-3-yl)benzamide | 1585498: Binding affinity to 80S ribosome in human HuH7 cells expressing human C-terminal V5/6-His-tagged PCSK9 assessed as inhibition of PCSK9 secretion after 16 to 24 hrs by AlphaLISA method | ic50 | 0.3000 | uM |
| N-(3-chloro-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-3-[4-(triazolo[4,5-b]pyridin-3-yl)phenyl]propanamide | 1532845: Binding affinity to 80S ribosome in human HuH7 cells harboring human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.3800 | uM |
| N-isoquinolin-1-yl-N-[(3R)-piperidin-3-yl]-4-(triazolo[4,5-b]pyridin-3-yl)benzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.3900 | uM |
| N-(3-chloro-2-pyridinyl)-4-(6-methyltriazolo[4,5-b]pyridin-3-yl)-N-[(3R)-piperidin-3-yl]benzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.4100 | uM |
| N-(3-chloro-2-pyridinyl)-4-(5-methyltriazolo[4,5-b]pyridin-3-yl)-N-[(3R)-piperidin-3-yl]benzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.4500 | uM |
| N-(1-methylpyrrolo[2,3-c]pyridin-7-yl)-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 0.5000 | uM |
| N-isoquinolin-1-yl-N-[(3R)-piperidin-3-yl]-4-pyrazolo[1,5-a]pyrimidin-3-ylbenzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.6900 | uM |
| N-(3-chloro-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-5-(triazolo[4,5-b]pyridin-3-yl)pyridine-2-carboxamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.7100 | uM |
| N-(3-chloro-2-pyridinyl)-3-[5-(6-methyltriazolo[4,5-b]pyridin-3-yl)-2-pyridinyl]-N-[(3R)-piperidin-3-yl]propanamide | 1532845: Binding affinity to 80S ribosome in human HuH7 cells harboring human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.8500 | uM |
| N-(3-chloro-2-pyridinyl)-5-(6-methyltriazolo[4,5-b]pyridin-3-yl)-N-[(3R)-piperidin-3-yl]pyridine-2-carboxamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.8500 | uM |
| N-(3-methyl-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-4-pyrazolo[1,5-a]pyrimidin-3-ylpiperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 0.9200 | uM |
| N-isoquinolin-1-yl-4-(1-methylpyrazol-4-yl)-N-[(3R)-piperidin-3-yl]benzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 1.0600 | uM |
| N-isoquinolin-1-yl-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 1.5400 | uM |
| N-(3-methyl-2-pyridinyl)-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532845: Binding affinity to 80S ribosome in human HuH7 cells harboring human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 2.0500 | uM |
| N-(3-chloro-2-pyridinyl)-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 2.0800 | uM |
| N-(5,8-dihydroisoquinolin-1-yl)-3-(4-methoxyphenyl)-N-[(3R)-piperidin-3-yl]propanamide | 1584424: Inhibition of human 80S ribosome-mediated PCSK9 translation expressed in CHO-K1 cells assessed as reduction in PCSK9 secretion | ec50 | 2.2000 | uM |
| N-isoquinolin-1-yl-3-(4-methoxyphenyl)-N-[(3R)-piperidin-3-yl]propanamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 2.6300 | uM |
| N-(3-chloro-2-pyridinyl)-4-(6-methylpyrazin-2-yl)-N-[(3R)-piperidin-3-yl]benzamide | 1497963: Binding affinity to 80S ribosome in human HuH7 cells assessed as inhibition of PCSK9 mRNA translation after overnight incubation by ELISA | ic50 | 2.8200 | uM |
| N-(3-chloro-2-pyridinyl)-4-[6-(dimethylamino)pyrazin-2-yl]-N-[(3R)-piperidin-3-yl]benzamide | 1497963: Binding affinity to 80S ribosome in human HuH7 cells assessed as inhibition of PCSK9 mRNA translation after overnight incubation by ELISA | ic50 | 2.9700 | uM |
| N-(3-chloro-2-pyridinyl)-4-[6-(methylamino)pyrazin-2-yl]-N-[(3R)-piperidin-3-yl]benzamide | 1497963: Binding affinity to 80S ribosome in human HuH7 cells assessed as inhibition of PCSK9 mRNA translation after overnight incubation by ELISA | ic50 | 3.0800 | uM |
| N-isoquinolin-1-yl-4-(6-methyl-1,2-benzoxazol-3-yl)-N-[(3R)-piperidin-3-yl]piperazine-1-carboxamide | 1532845: Binding affinity to 80S ribosome in human HuH7 cells harboring human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 3.5000 | uM |
| N-(3-methylpyrazin-2-yl)-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 3.6300 | uM |
| N-(3-chloro-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-6-(triazolo[4,5-b]pyridin-3-yl)pyridine-3-carboxamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 4.1000 | uM |
| N-isoquinolin-1-yl-N-[(3R)-piperidin-3-yl]-4-pyrazin-2-ylbenzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 4.3000 | uM |
| 4-(2-fluorophenyl)-N-(3-methyl-2-pyridinyl)-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 4.3800 | uM |
| 2,2-dichloro-N-[(1R,2R)-1,3-dihydroxy-1-(4-nitrophenyl)propan-2-yl]acetamide;sulfuric acid | 717551: Inhibition of mitochondrial ribosome-mediated protein synthesis in human HeLa cells assessed as {35S]methionine incorporation by autoradiography | ic50 | 7.4000 | uM |
CTD chemical–gene interactions
51 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | affects expression, decreases expression, increases expression | 4 |
| sodium arsenite | increases methylation, affects cotreatment, decreases expression, affects reaction, increases expression (+3 more) | 4 |
| methacrylaldehyde | affects cotreatment, increases oxidation, decreases expression, increases abundance | 2 |
| Acrolein | increases oxidation, decreases expression, increases abundance, affects cotreatment | 2 |
| Ozone | affects cotreatment, increases oxidation, decreases expression, increases abundance | 2 |
| aristolochic acid I | decreases expression, increases expression | 1 |
| FR900359 | decreases phosphorylation | 1 |
| bisphenol F | increases expression | 1 |
| AKT activator SC79 | increases expression, increases reaction | 1 |
| 2,4,6-tribromophenol | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | affects cotreatment, increases oxidation, increases abundance | 1 |
| deoxynivalenol | increases expression | 1 |
| pyrogallol 1,3-dimethyl ether | increases expression, affects cotreatment, affects localization | 1 |
| decabromobiphenyl ether | decreases expression | 1 |
| beta-lapachone | increases expression | 1 |
| arsenite | affects binding, increases reaction | 1 |
| tetrabromobisphenol A | decreases expression | 1 |
| perfluorooctanoic acid | increases expression | 1 |
| artenimol | affects binding | 1 |
| perfluorooctane sulfonic acid | increases expression | 1 |
| chloropicrin | affects expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | decreases expression, affects cotreatment | 1 |
| bisphenol B | increases expression | 1 |
| abrine | decreases expression | 1 |
| 2-amino-14,16-dimethyloctadecan-3-ol | decreases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 1 |
| Grape Seed Proanthocyanidins | increases expression, affects cotreatment | 1 |
| pentabrominated diphenyl ether 100 | decreases expression | 1 |
| hexabrominated diphenyl ether 153 | decreases expression | 1 |
ChEMBL screening assays
90 unique, capped per target: 90 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1920845 | Binding | Induction of ribosome to readthrough in human A-T lymphoblastoid cells assessed as ATM ser1981 autophosphorylation at 30 uM after 4 days by PTT-ELISA assay | Synthesis and evaluation of compounds that induce readthrough of premature termination codons. — Bioorg Med Chem Lett |
Clinical trials (associated diseases)
38 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00673608 | PHASE4 | COMPLETED | Magnetic Resonance Imaging (MRI) Assessments of the Heart and Liver Iron Load in Patients With Transfusion Induced Iron Overload |
| NCT00235391 | PHASE3 | COMPLETED | Expanded Access of Deferasirox to Patients With Congenital Disorders of Red Blood Cells and Chronic Iron Overload |
| NCT00001962 | PHASE2 | TERMINATED | A Study to Determine Whether Therapy With Daclizumab Will Benefit Patients With Bone Marrow Failure |
| NCT00011505 | PHASE2 | COMPLETED | Mobilization of Stem Cells With G-CSF for Collection From Patients With Diamond-Blackfan Anemia |
| NCT00301834 | PHASE2 | COMPLETED | Alemtuzumab, Fludarabine, and Busulfan Followed By Donor Stem Cell Transplant in Treating Young Patients With Hematologic Disorders |
| NCT00957931 | PHASE2 | COMPLETED | Allo-HCT MUD for Non-malignant Red Blood Cell (RBC) Disorders: Sickle Cell, Thal, and DBA: Reduced Intensity Conditioning, Co-tx MSCs |
| NCT01529827 | PHASE2 | COMPLETED | Fludarabine Phosphate, Melphalan, and Low-Dose Total-Body Irradiation Followed by Donor Peripheral Blood Stem Cell Transplant in Treating Patients With Hematologic Malignancies |
| NCT02386267 | PHASE2 | UNKNOWN | L-leucine in Diamond Blackfan Anemia Patients |
| NCT02512679 | PHASE2 | TERMINATED | Related Hematopoietic Stem Cell Transplantation (HSCT) for Genetic Diseases of Blood Cells |
| NCT03333486 | PHASE2 | TERMINATED | Fludarabine Phosphate, Cyclophosphamide, Total Body Irradiation, and Donor Stem Cell Transplant in Treating Patients With Blood Cancer |
| NCT04099966 | PHASE2 | RECRUITING | AlloSCT for Malignant and Non-malignant Hematologic Diseases Utilizing Alpha/Beta T Cell and CD19+ B Cell Depletion |
| NCT04965597 | PHASE2 | COMPLETED | Treosulfan-Based Conditioning Regimen Before a Blood or Bone Marrow Transplant for the Treatment of Bone Marrow Failure Diseases (BMT CTN 1904) |
| NCT01586455 | PHASE1 | COMPLETED | Human Placental-Derived Stem Cell Transplantation |
| NCT01917708 | PHASE1 | COMPLETED | Bone Marrow Transplant With Abatacept for Non-Malignant Diseases |
| NCT00176852 | PHASE2/PHASE3 | COMPLETED | Stem Cell Transplant for Hemoglobinopathy |
| NCT00176878 | PHASE2/PHASE3 | COMPLETED | Stem Cell Transplant for Bone Marrow Failure Syndromes |
| NCT00305708 | PHASE1/PHASE2 | COMPLETED | Busulfan, Antithymocyte Globulin, and Fludarabine Followed By a Donor Stem Cell Transplant in Treating Young Patients With Blood Disorders, Bone Marrow Disorders, Chronic Myelogenous Leukemia in First Chronic Phase, or Acute Myeloid Leukemia in First Remission |
| NCT01362595 | PHASE1/PHASE2 | COMPLETED | Pilot Phase I/II Study of Amino Acid Leucine in Treatment of Patients With Transfusion-Dependent Diamond Blackfan Anemia |
| NCT01419704 | PHASE1/PHASE2 | WITHDRAWN | Phase I/II Pilot Study of Mixed Chimerism to Treat Hemoglobinopathies |
| NCT01464164 | PHASE1/PHASE2 | TERMINATED | Safety and Efficacy Study of Sotatercept in Adults With Transfusion Dependent Diamond Blackfan Anemia |
| NCT01966367 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | CD34+ (Non-Malignant) Stem Cell Selection for Patients Receiving Allogeneic Stem Cell Transplantation |
| NCT02065869 | PHASE1/PHASE2 | TERMINATED | Safety Study of Gene Modified Donor T-cells Following TCRαβ+ Depleted Stem Cell Transplant |
| NCT03513328 | PHASE1/PHASE2 | COMPLETED | Conditioning Regimen for Allogeneic Hematopoietic Stem-Cell Transplantation |
| NCT03653338 | PHASE1/PHASE2 | RECRUITING | T-Cell Depleted Alternative Donor Bone Marrow Transplant for Sickle Cell Disease (SCD) and Other Anemias |
| NCT03733249 | PHASE1/PHASE2 | TERMINATED | Long Term Follow-up Study for Patients Enrolled on the BP-004 Clinical Study |
| NCT03966053 | PHASE1/PHASE2 | TERMINATED | The Use of Trifluoperazine in Transfusion Dependent DBA |
| NCT00027274 | Not specified | RECRUITING | Cancer in Inherited Bone Marrow Failure Syndromes |
| NCT00244010 | Not specified | COMPLETED | Partially Matched Stem Cell Transplantation for Patients With Refractory Severe Aplastic Anemia or Refractory Cytopenias |
| NCT00290628 | Not specified | TERMINATED | Donor Umbilical Cord Blood Transplant in Treating Patients With Hematologic Cancer |
| NCT01114776 | Not specified | COMPLETED | Multi-Center Study of Iron Overload: Pilot Study |
| NCT01319851 | Not specified | TERMINATED | Alefacept and Allogeneic Hematopoietic Stem Cell Transplantation |
| NCT01758042 | Not specified | COMPLETED | Bone Marrow and Kidney Transplant for Patients With Chronic Kidney Disease and Blood Disorders |
| NCT01913548 | Not specified | COMPLETED | Multi-Center Study of Iron Overload: Survey Study (MCSIO) |
| NCT02179359 | Not specified | TERMINATED | Hematopoietic Stem Cell Transplant for High Risk Hemoglobinopathies |
| NCT02720679 | Not specified | RECRUITING | Investigation of the Genetics of Hematologic Diseases |
| NCT03050268 | Not specified | RECRUITING | Familial Investigations of Childhood Cancer Predisposition |
| NCT05687474 | Not specified | COMPLETED | Baby Detect : Genomic Newborn Screening |
| NCT07186179 | Not specified | RECRUITING | Mobilization of CD34+ Peripheral Blood Stem Cells in Patients With Diamond Blackfan Anemia Syndrome (DBAS) |
Related Atlas pages
- Associated diseases: Diamond-Blackfan anemia 18, Diamond-Blackfan anemia
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): bipolar disorder, Diamond-Blackfan anemia, Diamond-Blackfan anemia 18