RPL23
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Also known as rpL17L23uL14
Summary
RPL23 (ribosomal protein L23, HGNC:10316) is a protein-coding gene on chromosome 17q12, encoding Large ribosomal subunit protein uL14 (P62829). Component of the large ribosomal subunit. It is a common-essential gene (DepMap: required in 100.0% of cancer cell lines).
Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 60S subunit. The protein belongs to the L14P family of ribosomal proteins. It is located in the cytoplasm. This gene has been referred to as rpL17 because the encoded protein shares amino acid identity with ribosomal protein L17 from Saccharomyces cerevisiae; however, its official symbol is RPL23. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome.
Source: NCBI Gene 9349 — RefSeq curated summary.
At a glance
- GWAS associations: 2
- Clinical variants (ClinVar): 49 total — 1 likely-pathogenic
- Phenotypes (HPO): 54
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- Cancer dependency (DepMap): dependent in 100.0% of screened cell lines (common-essential)
- MANE Select transcript:
NM_000978
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:10316 |
| Approved symbol | RPL23 |
| Name | ribosomal protein L23 |
| Location | 17q12 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | rpL17, L23, uL14 |
| Ensembl gene | ENSG00000125691 |
| Ensembl biotype | protein_coding |
| OMIM | 603662 |
| Entrez | 9349 |
Gene structure
Transcript identifiers
Ensembl transcripts: 20 — 15 protein_coding, 4 retained_intron, 1 nonsense_mediated_decay
ENST00000245857, ENST00000378096, ENST00000394332, ENST00000394333, ENST00000470646, ENST00000479035, ENST00000577407, ENST00000577760, ENST00000584056, ENST00000584583, ENST00000584912, ENST00000716859, ENST00000716860, ENST00000716861, ENST00000716862, ENST00000716863, ENST00000716864, ENST00000716865, ENST00000716866, ENST00000929683
RefSeq mRNA: 1 — MANE Select: NM_000978
NM_000978
CCDS: CCDS11330
Canonical transcript exons
ENST00000479035 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001315989 | 38853698 | 38853721 |
| ENSE00001900622 | 38847860 | 38850214 |
| ENSE00003577730 | 38852604 | 38852732 |
| ENSE00003582448 | 38853022 | 38853105 |
| ENSE00004030915 | 38850362 | 38850475 |
Expression profiles
Bgee: expression breadth ubiquitous, 210 present calls, max score 99.92.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 8.2681 / max 162.8225, expressed in 1705 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 165567 | 673.5268 | 1828 |
| 165566 | 5.4986 | 1597 |
| 165563 | 1.2618 | 660 |
| 165564 | 0.9357 | 575 |
| 165565 | 0.5721 | 331 |
Top tissues by expression
272 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| ganglionic eminence | UBERON:0004023 | 99.92 | gold quality |
| left ovary | UBERON:0002119 | 99.91 | gold quality |
| right ovary | UBERON:0002118 | 99.90 | gold quality |
| ventricular zone | UBERON:0003053 | 99.89 | gold quality |
| cortical plate | UBERON:0005343 | 99.89 | gold quality |
| monocyte | CL:0000576 | 99.86 | gold quality |
| right uterine tube | UBERON:0001302 | 99.86 | gold quality |
| endocervix | UBERON:0000458 | 99.85 | gold quality |
| right lung | UBERON:0002167 | 99.85 | gold quality |
| body of uterus | UBERON:0009853 | 99.85 | gold quality |
| colonic epithelium | UBERON:0000397 | 99.84 | gold quality |
| left uterine tube | UBERON:0001303 | 99.84 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 99.84 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 99.84 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 99.83 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 99.83 | gold quality |
| right adrenal gland | UBERON:0001233 | 99.83 | gold quality |
| left adrenal gland | UBERON:0001234 | 99.83 | gold quality |
| skin of abdomen | UBERON:0001416 | 99.83 | gold quality |
| metanephros cortex | UBERON:0010533 | 99.83 | gold quality |
| ectocervix | UBERON:0012249 | 99.83 | gold quality |
| granulocyte | CL:0000094 | 99.82 | gold quality |
| mucosa of stomach | UBERON:0001199 | 99.82 | gold quality |
| rectum | UBERON:0001052 | 99.81 | gold quality |
| left coronary artery | UBERON:0001626 | 99.81 | gold quality |
| calcaneal tendon | UBERON:0003701 | 99.81 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 99.81 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 99.81 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 99.81 | gold quality |
| stromal cell of endometrium | CL:0002255 | 99.80 | gold quality |
Single-cell (SCXA)
Detected in 29 experiment(s), a significant marker in 12.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-8142 | yes | 173.24 |
| E-CURD-88 | yes | 56.22 |
| E-CURD-46 | yes | 53.09 |
| E-GEOD-125970 | yes | 48.26 |
| E-CURD-112 | yes | 31.68 |
| E-HCAD-31 | yes | 25.48 |
| E-HCAD-9 | yes | 23.39 |
| E-MTAB-9221 | yes | 17.51 |
| E-MTAB-10042 | yes | 14.80 |
| E-CURD-122 | yes | 11.09 |
| E-MTAB-9801 | yes | 5.98 |
| E-MTAB-10596 | no | 5809.52 |
| E-MTAB-8559 | no | 4271.59 |
| E-MTAB-10283 | no | 4087.09 |
| E-MTAB-11121 | no | 3882.20 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): MYC
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 100.0% of screened cell lines, common-essential.
Literature-anchored findings (GeneRIF, showing 10)
- either RPS13 or RPL23 can promote MDR in gastric cancer cells by suppressing drug-induced apoptosis, and RPL23 may also promote MDR in gastric cancer cells through regulation of glutathione S-transferase-mediated drug-detoxifying system (PMID:15149863)
- the MDM2-L5-L11-L23 complex functions to inhibit MDM2-mediated p53 ubiquitination and thus activates p53 (PMID:15308643)
- These results reveal that ribosomal protein L23 is another regulator of the p53-MDM2 feedback regulation involved in cell growth. (PMID:15314173)
- Data show that, when overexpressed, ribosomal protein L23 inhibits HDM2-induced p53 polyubiquitination and degradation and causes a p53-dependent cell cycle arrest. (PMID:15314174)
- The ribosomal protein L23 is a negative regulator of Miz1-dependent transactivation. (PMID:19160485)
- Increased RPL23 expression is found in patients with higher-risk myelodysplastic syndrome (MDS) than in patients with lower-risk disease. (PMID:22580751)
- L23 is a novel oncogene in the squamous cell carcinoma of the head and neck (PMID:23160375)
- the data presented here demonstrate that co-transduction of RPL23 enhances the therapeutic efficacy of adenoviral-mediated p53 gene transfer in models of human gastric cancer and support the use of this strategy for cancer treatment. (PMID:23933826)
- the data presented here suggest that CEA promoter-targeted exogenous RPL23 expression could be of therapeutic value against human colorectal carcinoma that retains wt-p53. (PMID:26044651)
- Because RPL23 is encoded by a target gene of c-Myc, the RPL23/Miz-1/c-Myc regulatory circuit provides a feedback loop that links efficient RPL23 expression with c-Myc’s function to suppress Miz-1-induced Cdk inhibitors and thereby leads to apoptotic resistance in higher-risk myelodysplastic syndrome patients (PMID:28539603)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | rpl23 | ENSDARG00000053457 |
| mus_musculus | Rpl23 | ENSMUSG00000071415 |
| rattus_norvegicus | LOC134480573 | ENSRNOG00000004107 |
| drosophila_melanogaster | RpL23 | FBGN0010078 |
| caenorhabditis_elegans | WBGENE00004435 |
Protein
Protein identifiers
Large ribosomal subunit protein uL14 — P62829 (reviewed: P62829)
Alternative names: 60S ribosomal protein L17, 60S ribosomal protein L23
All UniProt accessions (6): B9ZVP7, C9JD32, P62829, J3KT29, J3KTJ3, J3QQT9
UniProt curated annotations — full annotation on UniProt →
Function. Component of the large ribosomal subunit. The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell.
Subunit / interactions. Component of the large ribosomal subunit.
Subcellular location. Cytoplasm.
Similarity. Belongs to the universal ribosomal protein uL14 family.
RefSeq proteins (1): NP_000969* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000218 | Ribosomal_uL14 | Family |
| IPR019972 | Ribosomal_uL14_CS | Conserved_site |
| IPR036853 | Ribosomal_uL14_sf | Homologous_superfamily |
Pfam: PF00238
UniProt features (4 total): modified residue 2, chain 1, sequence conflict 1
Structure
Experimental structures (PDB)
190 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8A3D | ELECTRON MICROSCOPY | 1.67 |
| 8GLP | ELECTRON MICROSCOPY | 1.67 |
| 8QYX | ELECTRON MICROSCOPY | 1.78 |
| 8QOI | ELECTRON MICROSCOPY | 1.9 |
| 9O3W | ELECTRON MICROSCOPY | 1.9 |
| 8YOO | ELECTRON MICROSCOPY | 2 |
| 9C3H | ELECTRON MICROSCOPY | 2 |
| 9I2D | ELECTRON MICROSCOPY | 2.19 |
| 9PBE | ELECTRON MICROSCOPY | 2.19 |
| 8QFD | ELECTRON MICROSCOPY | 2.2 |
| 8YOP | ELECTRON MICROSCOPY | 2.2 |
| 9GUL | ELECTRON MICROSCOPY | 2.2 |
| 9O3V | ELECTRON MICROSCOPY | 2.2 |
| 9O3Y | ELECTRON MICROSCOPY | 2.2 |
| 8JDK | ELECTRON MICROSCOPY | 2.26 |
| 8G5Y | ELECTRON MICROSCOPY | 2.29 |
| 9S3D | ELECTRON MICROSCOPY | 2.32 |
| 9RPV | ELECTRON MICROSCOPY | 2.35 |
| 9S3B | ELECTRON MICROSCOPY | 2.38 |
| 7OW7 | ELECTRON MICROSCOPY | 2.4 |
| 8K2C | ELECTRON MICROSCOPY | 2.4 |
| 8XSX | ELECTRON MICROSCOPY | 2.4 |
| 9SPF | ELECTRON MICROSCOPY | 2.4 |
| 9SPI | ELECTRON MICROSCOPY | 2.4 |
| 8JDL | ELECTRON MICROSCOPY | 2.42 |
| 9S3C | ELECTRON MICROSCOPY | 2.42 |
| 8FKV | ELECTRON MICROSCOPY | 2.47 |
| 9QLO | ELECTRON MICROSCOPY | 2.47 |
| 8FLE | ELECTRON MICROSCOPY | 2.48 |
| 9P8B | ELECTRON MICROSCOPY | 2.48 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P62829-F1 | 92.80 | 0.88 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (2): 17, 38
Function
Pathways and Gene Ontology
Reactome pathways
16 pathways
| ID | Pathway |
|---|---|
| R-HSA-156827 | L13a-mediated translational silencing of Ceruloplasmin expression |
| R-HSA-156902 | Peptide chain elongation |
| R-HSA-1799339 | SRP-dependent cotranslational protein targeting to membrane |
| R-HSA-192823 | Viral mRNA Translation |
| R-HSA-2408557 | Selenocysteine synthesis |
| R-HSA-6791226 | Major pathway of rRNA processing in the nucleolus and cytosol |
| R-HSA-72689 | Formation of a pool of free 40S subunits |
| R-HSA-72706 | GTP hydrolysis and joining of the 60S ribosomal subunit |
| R-HSA-72764 | Eukaryotic Translation Termination |
| R-HSA-9010553 | Regulation of expression of SLITs and ROBOs |
| R-HSA-9633012 | Response of EIF2AK4 (GCN2) to amino acid deficiency |
| R-HSA-975956 | Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) |
| R-HSA-975957 | Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) |
| R-HSA-9954709 | Ribosome Quality Control (RQC) complex extracts and degrades nascent peptide |
| R-HSA-9954714 | PELO:HBS1L and ABCE1 dissociate a ribosome on a non-stop mRNA |
| R-HSA-9954716 | ZNF598 and the Ribosome-associated Quality Trigger (RQT) complex dissociate a ribosome stalled on a no-go mRNA |
MSigDB gene sets: 436 (showing top):
GOBP_CYTOPLASMIC_TRANSLATION, GOBP_NEGATIVE_REGULATION_OF_PROTEOLYSIS, GRUETZMANN_PANCREATIC_CANCER_DN, GOBP_INTRACELLULAR_PROTEIN_TRANSPORT, GGGNRMNNYCAT_UNKNOWN, MIDORIKAWA_AMPLIFIED_IN_LIVER_CANCER, MODULE_151, GNF2_TPT1, GCM_NPM1, MORF_UBE2I, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, GOBP_STRIATED_MUSCLE_CELL_DIFFERENTIATION, DACOSTA_UV_RESPONSE_VIA_ERCC3_UP, HSIAO_HOUSEKEEPING_GENES, GOBP_MALE_GAMETE_GENERATION
GO Biological Process (15): negative regulation of transcription by RNA polymerase II (GO:0000122), cytoplasmic translation (GO:0002181), translation (GO:0006412), ribosomal protein import into nucleus (GO:0006610), positive regulation of cell population proliferation (GO:0008284), protein-DNA complex disassembly (GO:0032986), protein stabilization (GO:0050821), G1 to G0 transition (GO:0070314), positive regulation of signal transduction by p53 class mediator (GO:1901798), regulation of G1 to G0 transition (GO:1903450), negative regulation of ubiquitin-dependent protein catabolic process (GO:2000059), RNA processing (GO:0006396), positive regulation of gene expression (GO:0010628), cellular response to actinomycin D (GO:0072717), negative regulation of ubiquitin protein ligase activity (GO:1904667)
GO Molecular Function (7): transcription coactivator binding (GO:0001223), RNA binding (GO:0003723), structural constituent of ribosome (GO:0003735), ubiquitin protein ligase binding (GO:0031625), large ribosomal subunit rRNA binding (GO:0070180), ubiquitin ligase inhibitor activity (GO:1990948), protein binding (GO:0005515)
GO Cellular Component (14): nucleoplasm (GO:0005654), nucleolus (GO:0005730), cytoplasm (GO:0005737), cytosol (GO:0005829), ribosome (GO:0005840), focal adhesion (GO:0005925), membrane (GO:0016020), cytosolic large ribosomal subunit (GO:0022625), cytosolic ribosome (GO:0022626), protein-containing complex (GO:0032991), synapse (GO:0045202), extracellular exosome (GO:0070062), large ribosomal subunit (GO:0015934), ribonucleoprotein complex (GO:1990904)
Reactome top-level categories
Rollup of top-11 pathways:
| Category | Pathways |
|---|---|
| Ribosome-associated quality control | 3 |
| Translation | 2 |
| Cap-dependent Translation Initiation | 2 |
| Nonsense-Mediated Decay (NMD) | 2 |
| Eukaryotic Translation Initiation | 1 |
| Eukaryotic Translation Elongation | 1 |
| Influenza Viral RNA Transcription and Replication | 1 |
| Selenoamino acid metabolism | 1 |
| rRNA processing in the nucleus and cytosol | 1 |
| Signaling by ROBO receptors | 1 |
| Cellular response to starvation | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| gene expression | 2 |
| ribosome | 2 |
| nuclear lumen | 2 |
| intracellular membraneless organelle | 2 |
| regulation of transcription by RNA polymerase II | 1 |
| transcription by RNA polymerase II | 1 |
| negative regulation of DNA-templated transcription | 1 |
| translation | 1 |
| peptidyltransferase activity | 1 |
| translational initiation | 1 |
| translational elongation | 1 |
| translational termination | 1 |
| macromolecule biosynthetic process | 1 |
| protein metabolic process | 1 |
| protein biosynthetic process | 1 |
| protein import into nucleus | 1 |
| cell population proliferation | 1 |
| regulation of cell population proliferation | 1 |
| positive regulation of cellular process | 1 |
| protein-containing complex disassembly | 1 |
| protein-DNA complex organization | 1 |
| regulation of protein stability | 1 |
| cell cycle process | 1 |
| signal transduction by p53 class mediator | 1 |
| regulation of signal transduction by p53 class mediator | 1 |
| positive regulation of intracellular signal transduction | 1 |
| regulation of cell cycle process | 1 |
| G1 to G0 transition | 1 |
| ubiquitin-dependent protein catabolic process | 1 |
| negative regulation of protein catabolic process | 1 |
| regulation of ubiquitin-dependent protein catabolic process | 1 |
| RNA biosynthetic process | 1 |
| primary metabolic process | 1 |
| regulation of gene expression | 1 |
| positive regulation of macromolecule biosynthetic process | 1 |
| cellular response to antibiotic | 1 |
| response to actinomycin D | 1 |
| cellular response to nitrogen compound | 1 |
| cellular response to oxygen-containing compound | 1 |
Protein interactions and networks
STRING
0 interactions, top by confidence (×1000):
IntAct
421 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MAP3K14 | CHUK | psi-mi:“MI:0914”(association) | 0.950 |
| BCCIP | RPL23 | psi-mi:“MI:0915”(physical association) | 0.830 |
| RPL23 | BCCIP | psi-mi:“MI:0915”(physical association) | 0.830 |
| ARL3 | UNC119B | psi-mi:“MI:0914”(association) | 0.730 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| DCC | NTN1 | psi-mi:“MI:0914”(association) | 0.700 |
| TUBB | PLD2 | psi-mi:“MI:0914”(association) | 0.640 |
| NCBP2 | KPNA3 | psi-mi:“MI:0914”(association) | 0.640 |
| RACK1 | RPS17 | psi-mi:“MI:0915”(physical association) | 0.610 |
| RPL23 | MDM2 | psi-mi:“MI:0915”(physical association) | 0.570 |
| RPL5 | RPL23 | psi-mi:“MI:0915”(physical association) | 0.560 |
| RPL23 | MEOX2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MAPT | KIF2A | psi-mi:“MI:0914”(association) | 0.530 |
| TOR1AIP2 | TMEM223 | psi-mi:“MI:0914”(association) | 0.530 |
| ANTXR1 | POTEF | psi-mi:“MI:0914”(association) | 0.530 |
| CD79A | METTL15 | psi-mi:“MI:0914”(association) | 0.530 |
| EMILIN1 | METTL15 | psi-mi:“MI:0914”(association) | 0.530 |
| PCDHB16 | UPK3BL1 | psi-mi:“MI:0914”(association) | 0.530 |
| LRP1 | NME4 | psi-mi:“MI:0914”(association) | 0.530 |
| CDH13 | INSIG1 | psi-mi:“MI:0914”(association) | 0.530 |
| ASGR2 | MT-CO1 | psi-mi:“MI:0914”(association) | 0.530 |
| EIPR1 | LDHC | psi-mi:“MI:0914”(association) | 0.530 |
BioGRID (882): RPL23 (Affinity Capture-MS), RPL23 (Affinity Capture-Western), BCCIP (Two-hybrid), RPL23 (Affinity Capture-MS), RPL23 (Affinity Capture-MS), RPL23 (Affinity Capture-MS), RPL23 (Affinity Capture-MS), RPL23 (Affinity Capture-MS), RPL23 (Affinity Capture-MS), RPL23 (Affinity Capture-MS), RPL23 (Affinity Capture-MS), RPL23 (Affinity Capture-MS), RPL23 (Affinity Capture-MS), RPL23 (Affinity Capture-MS), RPL23 (Affinity Capture-MS)
ESM2 similar proteins: A0RM16, A1W1V5, A4IJL3, A5D5E6, A6Q1I3, A6QCQ3, A6U882, A7H107, A7H651, A7HWT4, A7HZL1, A7Z0R4, A7ZG07, A8ESU8, A8F9B1, A8FP16, B1HMV6, B1YGX6, B2UV77, B5Z8W2, B6JNF2, B7GJ93, B8F760, B9KEE5, B9L6M8, C3MB02, C5D3U3, G1T6D1, O50633, P04969, P56047, P62829, P62830, P62831, P62832, Q17ZD3, Q1CRU6, Q2RQY3, Q2W2L2, Q30TV9
Diamond homologs: A0A1D8PPT5, A0B9W0, A0RVY3, A1RRV9, A1RXG2, A2BMC9, A2SPL2, A3CT07, A3DNB7, A3MX34, A4FPL5, A4FWB1, A4WLG6, A4YCX6, A5FRY5, A5UL78, A6UQ54, A6UWU8, A6VGZ5, A7I5P9, A8ACD2, A8M8T7, A9A5I5, A9A9Q4, B0R666, B1GZ93, B1L776, B1XJS9, B3EP51, B3QR72, B7K238, B7KHZ7, B8HMR4, B9KZX7, B9LSR7, G1T6D1, O24787, O26121, O28364, O59427
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| RPL23 | “form complex” | “60S cytosolic large ribosomal subunit” | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 236 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| RIP-mediated NFkB activation via ZBP1 | 6 | 26.5× | 2e-05 |
| TRAF6 mediated NF-kB activation | 6 | 18.0× | 9e-05 |
| TNFR1-induced NF-kappa-B signaling pathway | 7 | 15.5× | 7e-05 |
| TNF signaling | 5 | 13.9× | 8e-04 |
| TAK1-dependent IKK and NF-kappa-B activation | 6 | 11.9× | 4e-04 |
| Fc epsilon receptor (FCERI) signaling | 5 | 8.9× | 4e-03 |
| Interleukin-1 family signaling | 5 | 8.9× | 4e-03 |
| Toll Like Receptor 3 (TLR3) Cascade | 7 | 8.9× | 5e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| non-canonical NF-kappaB signal transduction | 7 | 30.4× | 2e-06 |
| amyloid fibril formation | 5 | 15.5× | 2e-03 |
| canonical NF-kappaB signal transduction | 7 | 13.2× | 3e-04 |
| mRNA stabilization | 7 | 13.2× | 3e-04 |
| tumor necrosis factor-mediated signaling pathway | 7 | 11.9× | 5e-04 |
| intrinsic apoptotic signaling pathway | 6 | 11.1× | 2e-03 |
| cytoplasmic translation | 11 | 10.5× | 6e-06 |
| obsolete positive regulation of NF-kappaB transcription factor activity | 7 | 7.4× | 6e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
49 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 1 |
| Uncertain significance | 22 |
| Likely benign | 16 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 3233357 | NM_001035006.5(RPL17):c.452del (p.Thr151fs) | Likely pathogenic |
SpliceAI
0 predictions. Top by Δscore:
AlphaMissense
892 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:38850180:A:C | C125W | 1.000 |
| 17:38850199:C:T | G119E | 1.000 |
| 17:38850200:C:G | G119R | 1.000 |
| 17:38850200:C:T | G119R | 1.000 |
| 17:38850214:C:A | G114V | 1.000 |
| 17:38850362:C:G | G114R | 1.000 |
| 17:38850394:C:T | G103E | 1.000 |
| 17:38850395:C:G | G103R | 1.000 |
| 17:38850395:C:T | G103R | 1.000 |
| 17:38850399:A:C | N101K | 1.000 |
| 17:38850399:A:T | N101K | 1.000 |
| 17:38852628:C:G | G68R | 1.000 |
| 17:38852636:A:T | V65D | 1.000 |
| 17:38852732:C:T | G33E | 1.000 |
| 17:38853030:T:A | D30V | 1.000 |
| 17:38853031:C:G | D30H | 1.000 |
| 17:38853035:A:C | C28W | 1.000 |
| 17:38853036:C:T | C28Y | 1.000 |
| 17:38853037:A:G | C28R | 1.000 |
| 17:38850148:G:T | A136D | 0.999 |
| 17:38850157:G:T | A133E | 0.999 |
| 17:38850170:A:G | W129R | 0.999 |
| 17:38850170:A:T | W129R | 0.999 |
| 17:38850181:C:T | C125Y | 0.999 |
| 17:38850182:A:G | C125R | 0.999 |
| 17:38850185:C:T | E124K | 0.999 |
| 17:38850193:A:T | V121E | 0.999 |
| 17:38850205:A:T | I117N | 0.999 |
| 17:38850214:C:T | G114D | 0.999 |
| 17:38850362:C:A | G114C | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000125424 (17:38854507 G>C), RS1000500603 (17:38854655 G>C,T), RS1001082164 (17:38855351 C>G,T), RS1001492971 (17:38855641 G>C), RS1001954447 (17:38851486 T>C), RS1001985685 (17:38851875 G>A,C), RS1002800004 (17:38851562 C>CA), RS1003108377 (17:38847552 G>GC), RS1003884779 (17:38851542 T>C), RS1003941809 (17:38851051 A>C), RS1004377081 (17:38850726 A>G), RS1004881934 (17:38852736 C>A), RS1004963868 (17:38852461 T>A,C), RS1005967110 (17:38853540 T>C), RS1006128134 (17:38848533 G>A,C)
Disease associations
OMIM: gene MIM:603662 | disease phenotypes: MIM:209850
GenCC curated gene-disease
Mondo (5): pancytopenia (MONDO:0001529), macrocytic anemia (MONDO:0002281), fetal growth restriction (MONDO:0005030), autism (MONDO:0005260), attention deficit-hyperactivity disorder (MONDO:0007743)
Orphanet (0):
HPO phenotypes
54 total (30 of 54 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000023 | Inguinal hernia |
| HP:0000162 | Glossoptosis |
| HP:0000175 | Cleft palate |
| HP:0000201 | Pierre-Robin sequence |
| HP:0000218 | High palate |
| HP:0000272 | Malar flattening |
| HP:0000278 | Retrognathia |
| HP:0000286 | Epicanthus |
| HP:0000325 | Triangular face |
| HP:0000331 | Short chin |
| HP:0000347 | Micrognathia |
| HP:0000348 | High forehead |
| HP:0000365 | Hearing impairment |
| HP:0000369 | Low-set ears |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000413 | Atresia of the external auditory canal |
| HP:0000717 | Autism |
| HP:0000767 | Pectus excavatum |
| HP:0001508 | Failure to thrive |
| HP:0001864 | Clinodactyly of the 5th toe |
| HP:0001873 | Thrombocytopenia |
| HP:0001875 | Decreased total neutrophil count |
| HP:0001876 | Pancytopenia |
| HP:0001882 | Decreased total leukocyte count |
| HP:0001903 | Anemia |
| HP:0001909 | Leukemia |
| HP:0001943 | Hypoglycemia |
| HP:0001945 | Fever |
| HP:0001972 | Macrocytic anemia |
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST009391_2139 | Metabolite levels | 2.000000e-06 |
| GCST90020028_1635 | Hip circumference adjusted for BMI | 2.000000e-09 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0010384 | phosphatidylcholine 38:2 measurement |
| EFO:0008039 | BMI-adjusted hip circumference |
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D000748 | Anemia, Macrocytic | C15.378.050.252 |
| D001321 | Autistic Disorder | F03.625.164.113.500 |
| D005317 | Fetal Growth Retardation | C12.050.703.277.370; C16.300.390; C23.550.393.450 |
| D010198 | Pancytopenia | C15.378.243.875 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL3987582 (PROTEIN NUCLEIC-ACID COMPLEX), CHEMBL6067560 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL6067484 | GENTAMICIN SULFATE | 4 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
48 potent at pChembl≥5 of 54 total, top 47 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.52 | IC50 | 300 | nM | CHEMBL4109308 |
| 6.42 | IC50 | 380 | nM | CHEMBL4109308 |
| 6.42 | IC50 | 380 | nM | CHEMBL4574496 |
| 6.41 | IC50 | 390 | nM | CHEMBL4126894 |
| 6.39 | IC50 | 410 | nM | CHEMBL4114159 |
| 6.35 | IC50 | 450 | nM | CHEMBL4126496 |
| 6.30 | IC50 | 500 | nM | CHEMBL4574496 |
| 6.30 | IC50 | 500 | nM | CHEMBL4560206 |
| 6.16 | IC50 | 690 | nM | CHEMBL4130157 |
| 6.15 | IC50 | 710 | nM | CHEMBL4108338 |
| 6.11 | IC50 | 780 | nM | CHEMBL4114159 |
| 6.09 | IC50 | 820 | nM | CHEMBL4109308 |
| 6.07 | IC50 | 850 | nM | CHEMBL4107559 |
| 6.07 | IC50 | 850 | nM | CHEMBL4533299 |
| 6.05 | IC50 | 900 | nM | CHEMBL4126894 |
| 6.05 | IC50 | 900 | nM | CHEMBL4126496 |
| 6.04 | IC50 | 920 | nM | CHEMBL4554909 |
| 5.97 | IC50 | 1060 | nM | CHEMBL4128388 |
| 5.89 | IC50 | 1290 | nM | CHEMBL4130157 |
| 5.86 | IC50 | 1370 | nM | CHEMBL4107559 |
| 5.84 | IC50 | 1440 | nM | CHEMBL4108338 |
| 5.81 | IC50 | 1540 | nM | CHEMBL4534859 |
| 5.76 | IC50 | 1730 | nM | CHEMBL4534859 |
| 5.69 | IC50 | 2050 | nM | CHEMBL4566239 |
| 5.68 | IC50 | 2080 | nM | CHEMBL4446635 |
| 5.66 | IC50 | 2210 | nM | CHEMBL4446635 |
| 5.66 | EC50 | 2200 | nM | CHEMBL4464929 |
| 5.64 | IC50 | 2270 | nM | CHEMBL4533299 |
| 5.63 | IC50 | 2330 | nM | CHEMBL4566239 |
| 5.62 | IC50 | 2380 | nM | CHEMBL4128388 |
| 5.58 | IC50 | 2630 | nM | CHEMBL4128250 |
| 5.55 | IC50 | 2820 | nM | CHEMBL4127458 |
| 5.53 | IC50 | 2970 | nM | CHEMBL4127311 |
| 5.51 | IC50 | 3080 | nM | CHEMBL4126072 |
| 5.46 | IC50 | 3500 | nM | CHEMBL4525277 |
| 5.44 | IC50 | 3630 | nM | CHEMBL4469712 |
| 5.39 | IC50 | 4100 | nM | CHEMBL4128560 |
| 5.37 | IC50 | 4300 | nM | CHEMBL4127016 |
| 5.36 | IC50 | 4380 | nM | CHEMBL4527910 |
| 5.16 | IC50 | 7000 | nM | CHEMBL4109308 |
| 5.13 | IC50 | 7400 | nM | CHLORAMPHENICOL SULFATE SALT |
| 5.12 | Kd | 7501 | nM | CHEMBL5653589 |
| 5.12 | ED50 | 7501 | nM | CHEMBL5653589 |
| 5.09 | IC50 | 8040 | nM | CHEMBL4128250 |
| 5.08 | IC50 | 8370 | nM | CHEMBL4128250 |
| 5.03 | IC50 | 9320 | nM | CHEMBL4127016 |
| 5.03 | IC50 | 9240 | nM | CHEMBL4128560 |
PubChem BioAssay actives
47 with measured affinity, of 209 total; 27 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| N-(3-chloro-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-4-(triazolo[4,5-b]pyridin-3-yl)benzamide | 1585498: Binding affinity to 80S ribosome in human HuH7 cells expressing human C-terminal V5/6-His-tagged PCSK9 assessed as inhibition of PCSK9 secretion after 16 to 24 hrs by AlphaLISA method | ic50 | 0.3000 | uM |
| N-(3-chloro-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-3-[4-(triazolo[4,5-b]pyridin-3-yl)phenyl]propanamide | 1532845: Binding affinity to 80S ribosome in human HuH7 cells harboring human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.3800 | uM |
| N-isoquinolin-1-yl-N-[(3R)-piperidin-3-yl]-4-(triazolo[4,5-b]pyridin-3-yl)benzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.3900 | uM |
| N-(3-chloro-2-pyridinyl)-4-(6-methyltriazolo[4,5-b]pyridin-3-yl)-N-[(3R)-piperidin-3-yl]benzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.4100 | uM |
| N-(3-chloro-2-pyridinyl)-4-(5-methyltriazolo[4,5-b]pyridin-3-yl)-N-[(3R)-piperidin-3-yl]benzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.4500 | uM |
| N-(1-methylpyrrolo[2,3-c]pyridin-7-yl)-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 0.5000 | uM |
| N-isoquinolin-1-yl-N-[(3R)-piperidin-3-yl]-4-pyrazolo[1,5-a]pyrimidin-3-ylbenzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.6900 | uM |
| N-(3-chloro-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-5-(triazolo[4,5-b]pyridin-3-yl)pyridine-2-carboxamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.7100 | uM |
| N-(3-chloro-2-pyridinyl)-3-[5-(6-methyltriazolo[4,5-b]pyridin-3-yl)-2-pyridinyl]-N-[(3R)-piperidin-3-yl]propanamide | 1532845: Binding affinity to 80S ribosome in human HuH7 cells harboring human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.8500 | uM |
| N-(3-chloro-2-pyridinyl)-5-(6-methyltriazolo[4,5-b]pyridin-3-yl)-N-[(3R)-piperidin-3-yl]pyridine-2-carboxamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.8500 | uM |
| N-(3-methyl-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-4-pyrazolo[1,5-a]pyrimidin-3-ylpiperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 0.9200 | uM |
| N-isoquinolin-1-yl-4-(1-methylpyrazol-4-yl)-N-[(3R)-piperidin-3-yl]benzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 1.0600 | uM |
| N-isoquinolin-1-yl-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 1.5400 | uM |
| N-(3-methyl-2-pyridinyl)-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532845: Binding affinity to 80S ribosome in human HuH7 cells harboring human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 2.0500 | uM |
| N-(3-chloro-2-pyridinyl)-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 2.0800 | uM |
| N-(5,8-dihydroisoquinolin-1-yl)-3-(4-methoxyphenyl)-N-[(3R)-piperidin-3-yl]propanamide | 1584424: Inhibition of human 80S ribosome-mediated PCSK9 translation expressed in CHO-K1 cells assessed as reduction in PCSK9 secretion | ec50 | 2.2000 | uM |
| N-isoquinolin-1-yl-3-(4-methoxyphenyl)-N-[(3R)-piperidin-3-yl]propanamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 2.6300 | uM |
| N-(3-chloro-2-pyridinyl)-4-(6-methylpyrazin-2-yl)-N-[(3R)-piperidin-3-yl]benzamide | 1497963: Binding affinity to 80S ribosome in human HuH7 cells assessed as inhibition of PCSK9 mRNA translation after overnight incubation by ELISA | ic50 | 2.8200 | uM |
| N-(3-chloro-2-pyridinyl)-4-[6-(dimethylamino)pyrazin-2-yl]-N-[(3R)-piperidin-3-yl]benzamide | 1497963: Binding affinity to 80S ribosome in human HuH7 cells assessed as inhibition of PCSK9 mRNA translation after overnight incubation by ELISA | ic50 | 2.9700 | uM |
| N-(3-chloro-2-pyridinyl)-4-[6-(methylamino)pyrazin-2-yl]-N-[(3R)-piperidin-3-yl]benzamide | 1497963: Binding affinity to 80S ribosome in human HuH7 cells assessed as inhibition of PCSK9 mRNA translation after overnight incubation by ELISA | ic50 | 3.0800 | uM |
| N-isoquinolin-1-yl-4-(6-methyl-1,2-benzoxazol-3-yl)-N-[(3R)-piperidin-3-yl]piperazine-1-carboxamide | 1532845: Binding affinity to 80S ribosome in human HuH7 cells harboring human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 3.5000 | uM |
| N-(3-methylpyrazin-2-yl)-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 3.6300 | uM |
| N-(3-chloro-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-6-(triazolo[4,5-b]pyridin-3-yl)pyridine-3-carboxamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 4.1000 | uM |
| N-isoquinolin-1-yl-N-[(3R)-piperidin-3-yl]-4-pyrazin-2-ylbenzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 4.3000 | uM |
| 4-(2-fluorophenyl)-N-(3-methyl-2-pyridinyl)-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 4.3800 | uM |
| 2,2-dichloro-N-[(1R,2R)-1,3-dihydroxy-1-(4-nitrophenyl)propan-2-yl]acetamide;sulfuric acid | 717551: Inhibition of mitochondrial ribosome-mediated protein synthesis in human HeLa cells assessed as {35S]methionine incorporation by autoradiography | ic50 | 7.4000 | uM |
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149253: Binding affinity to human RPL23 incubated for 45 mins by Kinobead based pull down assay | kd | 7.5006 | uM |
CTD chemical–gene interactions
61 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | affects expression, decreases expression, increases expression | 4 |
| sodium arsenite | affects cotreatment, increases expression, decreases expression, increases activity | 3 |
| Arsenic Trioxide | increases expression | 2 |
| Tretinoin | affects cotreatment, increases expression, decreases expression | 2 |
| Cadmium Chloride | increases abundance, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| bisphenol F | increases expression | 1 |
| dicrotophos | decreases expression | 1 |
| 2,4,6-tribromophenol | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| deoxynivalenol | increases expression | 1 |
| sodium arsenate | decreases expression | 1 |
| pyrogallol 1,3-dimethyl ether | increases expression, affects localization, affects cotreatment | 1 |
| decabromobiphenyl ether | decreases expression | 1 |
| arsenite | affects binding, increases reaction | 1 |
| methylparaben | decreases expression | 1 |
| mono-(2-ethylhexyl)phthalate | increases expression | 1 |
| tetrabromobisphenol A | decreases expression | 1 |
| nickel sulfate | decreases expression | 1 |
| chloropicrin | affects expression | 1 |
| perfluoro-n-nonanoic acid | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| ICG 001 | decreases expression | 1 |
| bisphenol B | increases expression | 1 |
| abrine | decreases expression | 1 |
| 2-amino-14,16-dimethyloctadecan-3-ol | decreases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 1 |
| pentabrominated diphenyl ether 100 | decreases expression | 1 |
| hexabrominated diphenyl ether 153 | decreases expression | 1 |
| bisphenol S | increases expression | 1 |
ChEMBL screening assays
90 unique, capped per target: 90 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1920845 | Binding | Induction of ribosome to readthrough in human A-T lymphoblastoid cells assessed as ATM ser1981 autophosphorylation at 30 uM after 4 days by PTT-ELISA assay | Synthesis and evaluation of compounds that induce readthrough of premature termination codons. — Bioorg Med Chem Lett |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00347867 | PHASE4 | UNKNOWN | Viagra for the Treatment of IUGR |
| NCT00909974 | PHASE4 | COMPLETED | Effect of Prenatal Nutritional Supplementation on Birth Outcome in Hounde District, Burkina Faso |
| NCT01352234 | PHASE4 | COMPLETED | Comparison of Doses of Acetylsalicylic Acid in Women With Previous History of Preeclampsia |
| NCT01390051 | PHASE4 | COMPLETED | Can Low Molecular Weight Heparin During Pregnancy With Intrauterine Growth Restriction Increase Birth Weight? |
| NCT01695070 | PHASE4 | COMPLETED | Melatonin to Prevent Brain Injury in Unborn Growth Restricted Babies |
| NCT03674606 | PHASE4 | COMPLETED | Trial of Early Screening Test for Pre-eclampsia and Growth Restriction |
| NCT04051567 | PHASE4 | UNKNOWN | Low-dose Aspirin for Prevention of Adverse Pregnancy Outcomes in Twin Pregnancies |
| NCT05029778 | PHASE4 | UNKNOWN | Arginine + Citrulline as a Supplement for Weight Gain in Fetus With a Decrease in Their Growth Curve |
| NCT05800938 | PHASE4 | COMPLETED | The Effect of Oral Isosorbide Mononitrate Therapy on Umbilical Artery Doppler Resistance Index in Pregnancies With Intrauterine Growth Restriction: Prospective Randomized Control Trial |
| NCT07171086 | PHASE4 | NOT_YET_RECRUITING | AI-POCUS for Maternal and Neonatal Health in Ethiopia |
| NCT00211796 | PHASE4 | COMPLETED | Divalproex Sodium ER in Adult Autism |
| NCT00391261 | PHASE4 | COMPLETED | An Open-label Trial of Metformin for Weight Control of Pediatric Patients on Antipsychotic Medications. |
| NCT00409747 | PHASE4 | COMPLETED | Minocycline to Treat Childhood Regressive Autism |
| NCT00576732 | PHASE4 | COMPLETED | A Study of the Effectiveness and Safety of Two Doses of Risperidone in the Treatment of Children and Adolescents With Autistic Disorder |
| NCT00844753 | PHASE4 | COMPLETED | Atomoxetine, Placebo and Parent Management Training in Autism |
| NCT01028820 | PHASE4 | COMPLETED | FMRI Brain Activation of Aripiprazole Treatment in Autism Spectrum Disorders |
| NCT01098383 | PHASE4 | UNKNOWN | Treatment With Acetyl-Choline Esterase Inhibitors in Children With Autism Spectrum Disorders |
| NCT01333865 | PHASE4 | COMPLETED | A Study of Memantine Hydrochloride (Namenda®) for Cognitive and Behavioral Impairment in Adults With Autism Spectrum Disorders |
| NCT01337700 | PHASE4 | COMPLETED | Milnacipran in Autism and the Functional Locus Coeruleus and Noradrenergic Model of Autism |
| NCT01695200 | PHASE4 | COMPLETED | Omega-3 Fatty Acids in Autism Spectrum Disorders |
| NCT02069977 | PHASE4 | UNKNOWN | Study to Evaluate the Efficacy and Safety of Aripiprazole |
| NCT02096952 | PHASE4 | COMPLETED | Methylphenidate ER Liquid Formulation in Adults With ASD and ADHD |
| NCT02199925 | PHASE4 | UNKNOWN | An Open-Label Study to Evaluate the Efficacy of High-Dose Gammaplex in Children on the Autism Spectrum |
| NCT02235467 | PHASE4 | COMPLETED | Multisite Study: Parental Training Using Video Modelling to Develop Social Skills in Children With Autism |
| NCT02255565 | PHASE4 | COMPLETED | Dose Response Effects of Quillivant XR in Children With ADHD and Autism: A Pilot Study |
| NCT02940574 | PHASE4 | COMPLETED | Neural and Behavioral Effects of Oxytocin in Autism Spectrum Disorders |
| NCT03333629 | PHASE4 | COMPLETED | Promoting Positive Outcomes for Individuals With ASD: Linking Early Detection, Treatment, and Long-term Outcomes |
| NCT03337646 | PHASE4 | COMPLETED | Evaluation of the Effect and Safety of Lisdexamfetamine in Children Aged 6-12 With ADHD and Autism |
| NCT03538431 | PHASE4 | COMPLETED | Improving Driving in Young People With Autism Spectrum Disorders |
| NCT03757585 | PHASE4 | COMPLETED | Natural Treatments for the Management of Emotional Dysregulation in Youth With Non-verbal Learning Disability (NVLD) and/or Autism Spectrum Disorders (ASD) |
| NCT04903353 | PHASE4 | COMPLETED | Pragmatic Trial Comparing Weight Gain in Children With Autism Taking Risperidone Versus Aripiprazole |
| NCT05063656 | PHASE4 | COMPLETED | Biomarker-Driven Pharmacological Treatment of Adolescents With Autism Spectrum Disorder With Gabapentin |
| NCT05146245 | PHASE4 | UNKNOWN | Safety and Pharmacokinetics of Antipsychotics in Children 2: Studying TDM in an RCT |
| NCT05916339 | PHASE4 | RECRUITING | AWARE: Management of ADHD in Autism Spectrum Disorder |
| NCT05954052 | PHASE4 | TERMINATED | A Study of Glutathione in Children With Autism Spectrum Disorder |
| NCT06853665 | PHASE4 | RECRUITING | The TEAM Study - Treatment Efficacy for Autism/Attention Using Mixed Amphetamine |
| NCT07054697 | PHASE4 | COMPLETED | Pilot-RCT With Individualized Homeopathic Treatment in the Children With Autism Spectrum Disorder |
| NCT07161804 | PHASE4 | COMPLETED | Pilot RCT Using Homeopathic Medicines in ASD |
| NCT07439042 | PHASE4 | NOT_YET_RECRUITING | Buspirone for Anxiety in Autistic Youth |
| NCT00000597 | PHASE3 | COMPLETED | Multi-Center Trial of Anti-Thymocyte Globulin in Treatment of Aplastic Anemia and Other Hematologic Disorders |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): attention deficit-hyperactivity disorder, autism, fetal growth restriction, macrocytic anemia, pancytopenia