RPL26
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Also known as L26uL24
Summary
RPL26 (ribosomal protein L26, HGNC:10327) is a protein-coding gene on chromosome 17p13.1, encoding Large ribosomal subunit protein uL24 (P61254). Component of the large ribosomal subunit. It is a common-essential gene (DepMap: required in 100.0% of cancer cell lines).
Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 60S subunit. The protein belongs to the L24P family of ribosomal proteins. It is located in the cytoplasm. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. Mutations in this gene result in Diamond-Blackfan anemia. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 6154 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Diamond-Blackfan anemia 11 (Strong, GenCC) — +1 more curated relationship
- Clinical variants (ClinVar): 101 total — 3 pathogenic, 3 likely-pathogenic
- Phenotypes (HPO): 76
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- Cancer dependency (DepMap): dependent in 100.0% of screened cell lines (common-essential)
- MANE Select transcript:
NM_000987
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:10327 |
| Approved symbol | RPL26 |
| Name | ribosomal protein L26 |
| Location | 17p13.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | L26, uL24 |
| Ensembl gene | ENSG00000161970 |
| Ensembl biotype | protein_coding |
| OMIM | 603704 |
| Entrez | 6154 |
Gene structure
Transcript identifiers
Ensembl transcripts: 50 — 45 protein_coding, 3 retained_intron, 1 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined
ENST00000578069, ENST00000578115, ENST00000578812, ENST00000582485, ENST00000582556, ENST00000583011, ENST00000583515, ENST00000584164, ENST00000584343, ENST00000584441, ENST00000584906, ENST00000585176, ENST00000648839, ENST00000851389, ENST00000851390, ENST00000851391, ENST00000851392, ENST00000851393, ENST00000851394, ENST00000913688, ENST00000913689, ENST00000913690, ENST00000913691, ENST00000913692, ENST00000913693, ENST00000913694, ENST00000913695, ENST00000913696, ENST00000913697, ENST00000913698, ENST00000913699, ENST00000913700, ENST00000913701, ENST00000913702, ENST00000913703, ENST00000913704, ENST00000913705, ENST00000913706, ENST00000913707, ENST00000913708, ENST00000913709, ENST00000913710, ENST00000913711, ENST00000913712, ENST00000913713, ENST00000913714, ENST00000942087, ENST00000942088, ENST00000942089, ENST00000942090
RefSeq mRNA: 3 — MANE Select: NM_000987
NM_000987, NM_001315530, NM_001315531
CCDS: CCDS11142
Canonical transcript exons
ENST00000648839 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001278148 | 8377516 | 8377692 |
| ENSE00002728802 | 8383157 | 8383193 |
| ENSE00003527039 | 8382143 | 8382315 |
| ENSE00003572151 | 8379796 | 8379936 |
Expression profiles
Bgee: expression breadth ubiquitous, 134 present calls, max score 99.96.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 176.0092 / max 1837.9763, expressed in 1814 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 164431 | 176.0092 | 1814 |
Top tissues by expression
134 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| cortical plate | UBERON:0005343 | 99.96 | gold quality |
| calcaneal tendon | UBERON:0003701 | 99.95 | gold quality |
| ganglionic eminence | UBERON:0004023 | 99.94 | gold quality |
| ovary | UBERON:0000992 | 99.92 | gold quality |
| left ovary | UBERON:0002119 | 99.92 | gold quality |
| granulocyte | CL:0000094 | 99.91 | gold quality |
| monocyte | CL:0000576 | 99.91 | gold quality |
| leukocyte | CL:0000738 | 99.91 | gold quality |
| lymph node | UBERON:0000029 | 99.91 | gold quality |
| right ovary | UBERON:0002118 | 99.91 | gold quality |
| endocervix | UBERON:0000458 | 99.90 | gold quality |
| corpus callosum | UBERON:0002336 | 99.90 | gold quality |
| fallopian tube | UBERON:0003889 | 99.90 | gold quality |
| colonic epithelium | UBERON:0000397 | 99.89 | gold quality |
| rectum | UBERON:0001052 | 99.89 | gold quality |
| right uterine tube | UBERON:0001302 | 99.89 | gold quality |
| gall bladder | UBERON:0002110 | 99.89 | gold quality |
| thoracic mammary gland | UBERON:0005200 | 99.89 | gold quality |
| body of uterus | UBERON:0009853 | 99.89 | gold quality |
| ectocervix | UBERON:0012249 | 99.89 | gold quality |
| uterine cervix | UBERON:0000002 | 99.88 | gold quality |
| islet of Langerhans | UBERON:0000006 | 99.88 | gold quality |
| vagina | UBERON:0000996 | 99.88 | gold quality |
| adipose tissue | UBERON:0001013 | 99.88 | gold quality |
| myometrium | UBERON:0001296 | 99.88 | gold quality |
| thyroid gland | UBERON:0002046 | 99.88 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 99.88 | gold quality |
| omental fat pad | UBERON:0010414 | 99.88 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 99.87 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 99.87 | gold quality |
Single-cell (SCXA)
Detected in 27 experiment(s), a significant marker in 11.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-25 | yes | 922.84 |
| E-CURD-122 | yes | 93.60 |
| E-CURD-88 | yes | 56.86 |
| E-MTAB-9221 | yes | 53.54 |
| E-MTAB-6678 | yes | 36.31 |
| E-CURD-112 | yes | 34.94 |
| E-MTAB-9067 | yes | 26.60 |
| E-MTAB-10042 | yes | 16.33 |
| E-GEOD-137537 | yes | 6.09 |
| E-HCAD-35 | yes | 5.55 |
| E-GEOD-114530 | no | 7476.80 |
| E-MTAB-9435 | no | 6365.27 |
| E-HCAD-23 | no | 5574.36 |
| E-HCAD-9 | no | 5385.15 |
| E-HCAD-38 | no | 5375.48 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): FOXI3, MYC, STAT6
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 100.0% of screened cell lines, common-essential.
Literature-anchored findings (GeneRIF, showing 7)
- Mdm2 binds L26 and drives its polyubiquitylation and proteasomal degradation. (PMID:18951086)
- Northern Blot Together with RPL5, RPL11, and RPS7, RPL26 is the fourth RP regulating p53 activity that is linked to diamond-blackfan anemia. (PMID:22431104)
- suggest a model in which the base pairings in the p53 UTR interaction regions are critical for both translational repression and stress induction of p53 by NCL and RPL26 (PMID:22433872)
- The results showed that knockdown of RPL26 or RPL29 expression significantly suppressed cell proliferation, induced cell arrest at G0/G1 phase and enhanced cell apoptosis (PMID:22868929)
- Six1 regulates p53 via a dual mechanism involving upregulation of microRNA-27a and downregulation of RPL26. (PMID:26687066)
- In colorectal tumor cells RPL26 regulates p73 expression via two distinct mechanisms: protein stability and mRNA translation. (PMID:27825141)
- ionizing radiation (IR) inhibits the activity of SMG1, a phosphoinositide-3-kinase-like kinase family member, reducing the binding of SMG1 to a specific region near exon 9 of p53 precursor mRNA and promoting the binding of ribosomal protein L26 (RPL26) to p53 pre-mRNA (PMID:28288992)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | rpl26 | ENSDARG00000102317 |
| mus_musculus | Rpl26 | ENSMUSG00000060938 |
| rattus_norvegicus | Rpl26-ps1 | ENSRNOG00000032777 |
| drosophila_melanogaster | RpL26 | FBGN0036825 |
| caenorhabditis_elegans | WBGENE00004440 |
Paralogs (1): RPL26L1 (ENSG00000037241)
Protein
Protein identifiers
Large ribosomal subunit protein uL24 — P61254 (reviewed: P61254)
Alternative names: 60S ribosomal protein L26
All UniProt accessions (6): P61254, J3KS10, J3KSS0, J3QQV1, J3QRC4, J3QRI7
UniProt curated annotations — full annotation on UniProt →
Function. Component of the large ribosomal subunit. The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell.
Subunit / interactions. Component of the large ribosomal subunit. Interacts with DHX33.
Subcellular location. Cytoplasm.
Post-translational modifications. Ufmylated by UFL1 in response to endoplasmic reticulum stress, promoting reticulophagy of endoplasmic reticulum sheets.
Disease relevance. Diamond-Blackfan anemia 11 (DBA11) [MIM:614900] An autosomal dominant form of Diamond-Blackfan anemia, a congenital non-regenerative hypoplastic anemia that usually presents early in infancy. Diamond-Blackfan anemia is characterized by a moderate to severe macrocytic anemia, erythroblastopenia, and an increased risk of malignancy. 30 to 40% of Diamond-Blackfan anemia patients present with short stature and congenital anomalies, the most frequent being craniofacial (Pierre-Robin syndrome and cleft palate), thumb and urogenital anomalies. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the universal ribosomal protein uL24 family.
RefSeq proteins (3): NP_000978, NP_001302459, NP_001302460 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR005756 | Ribosomal_uL24_euk_arc | Family |
| IPR005824 | KOW | Domain |
| IPR005825 | Ribosomal_uL24_CS | Conserved_site |
| IPR008991 | Translation_prot_SH3-like_sf | Homologous_superfamily |
| IPR014722 | Rib_uL2_dom2 | Homologous_superfamily |
| IPR041988 | Ribosomal_uL24_KOW | Domain |
Pfam: PF00467, PF16906
UniProt features (6 total): region of interest 2, chain 1, modified residue 1, cross-link 1, sequence conflict 1
Structure
Experimental structures (PDB)
197 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8A3D | ELECTRON MICROSCOPY | 1.67 |
| 8GLP | ELECTRON MICROSCOPY | 1.67 |
| 8QYX | ELECTRON MICROSCOPY | 1.78 |
| 8QOI | ELECTRON MICROSCOPY | 1.9 |
| 9O3W | ELECTRON MICROSCOPY | 1.9 |
| 8YOO | ELECTRON MICROSCOPY | 2 |
| 9C3H | ELECTRON MICROSCOPY | 2 |
| 9I2D | ELECTRON MICROSCOPY | 2.19 |
| 9PBE | ELECTRON MICROSCOPY | 2.19 |
| 8QFD | ELECTRON MICROSCOPY | 2.2 |
| 8YOP | ELECTRON MICROSCOPY | 2.2 |
| 9GUL | ELECTRON MICROSCOPY | 2.2 |
| 9O3V | ELECTRON MICROSCOPY | 2.2 |
| 9O3Y | ELECTRON MICROSCOPY | 2.2 |
| 8JDK | ELECTRON MICROSCOPY | 2.26 |
| 8G5Y | ELECTRON MICROSCOPY | 2.29 |
| 9S3D | ELECTRON MICROSCOPY | 2.32 |
| 9RPV | ELECTRON MICROSCOPY | 2.35 |
| 9S3B | ELECTRON MICROSCOPY | 2.38 |
| 7OW7 | ELECTRON MICROSCOPY | 2.4 |
| 8K2C | ELECTRON MICROSCOPY | 2.4 |
| 8XSX | ELECTRON MICROSCOPY | 2.4 |
| 9SPF | ELECTRON MICROSCOPY | 2.4 |
| 9SPI | ELECTRON MICROSCOPY | 2.4 |
| 8JDL | ELECTRON MICROSCOPY | 2.42 |
| 9S3C | ELECTRON MICROSCOPY | 2.42 |
| 8FKV | ELECTRON MICROSCOPY | 2.47 |
| 9QLO | ELECTRON MICROSCOPY | 2.47 |
| 8FLE | ELECTRON MICROSCOPY | 2.48 |
| 9P8B | ELECTRON MICROSCOPY | 2.48 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P61254-F1 | 92.77 | 0.84 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (2): 139, 136
Function
Pathways and Gene Ontology
Reactome pathways
16 pathways
| ID | Pathway |
|---|---|
| R-HSA-156827 | L13a-mediated translational silencing of Ceruloplasmin expression |
| R-HSA-156902 | Peptide chain elongation |
| R-HSA-1799339 | SRP-dependent cotranslational protein targeting to membrane |
| R-HSA-192823 | Viral mRNA Translation |
| R-HSA-2408557 | Selenocysteine synthesis |
| R-HSA-6791226 | Major pathway of rRNA processing in the nucleolus and cytosol |
| R-HSA-72689 | Formation of a pool of free 40S subunits |
| R-HSA-72706 | GTP hydrolysis and joining of the 60S ribosomal subunit |
| R-HSA-72764 | Eukaryotic Translation Termination |
| R-HSA-9010553 | Regulation of expression of SLITs and ROBOs |
| R-HSA-9633012 | Response of EIF2AK4 (GCN2) to amino acid deficiency |
| R-HSA-975956 | Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) |
| R-HSA-975957 | Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) |
| R-HSA-9954709 | Ribosome Quality Control (RQC) complex extracts and degrades nascent peptide |
| R-HSA-9954714 | PELO:HBS1L and ABCE1 dissociate a ribosome on a non-stop mRNA |
| R-HSA-9954716 | ZNF598 and the Ribosome-associated Quality Trigger (RQT) complex dissociate a ribosome stalled on a no-go mRNA |
MSigDB gene sets: 437 (showing top):
GOBP_CYTOPLASMIC_TRANSLATION, GOBP_RIBOSOME_BIOGENESIS, GOBP_RESPONSE_TO_IONIZING_RADIATION, GOBP_INTRINSIC_APOPTOTIC_SIGNALING_PATHWAY_IN_RESPONSE_TO_DNA_DAMAGE_BY_P53_CLASS_MEDIATOR, GOBP_POSITIVE_REGULATION_OF_DNA_DAMAGE_RESPONSE_SIGNAL_TRANSDUCTION_BY_P53_CLASS_MEDIATOR, GOBP_CELLULAR_RESPONSE_TO_UV, MODULE_151, BHATI_G2M_ARREST_BY_2METHOXYESTRADIOL_DN, GOBP_CELLULAR_RESPONSE_TO_LIGHT_STIMULUS, STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN, GOBP_CELLULAR_RESPONSE_TO_GAMMA_RADIATION, GOBP_REGULATION_OF_DNA_DAMAGE_RESPONSE_SIGNAL_TRANSDUCTION_BY_P53_CLASS_MEDIATOR, GOBP_TRANSLATION, GOBP_POST_TRANSCRIPTIONAL_REGULATION_OF_GENE_EXPRESSION, GOBP_POSITIVE_REGULATION_OF_SIGNAL_TRANSDUCTION_BY_P53_CLASS_MEDIATOR
GO Biological Process (11): cytoplasmic translation (GO:0002181), rRNA processing (GO:0006364), translation (GO:0006412), DNA damage response, signal transduction by p53 class mediator (GO:0030330), cellular response to UV (GO:0034644), ribosomal large subunit biogenesis (GO:0042273), positive regulation of DNA damage response, signal transduction by p53 class mediator (GO:0043517), positive regulation of translation (GO:0045727), cellular response to gamma radiation (GO:0071480), positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator (GO:1902167), regulation of translation involved in cellular response to UV (GO:1904803)
GO Molecular Function (4): RNA binding (GO:0003723), structural constituent of ribosome (GO:0003735), mRNA 5’-UTR binding (GO:0048027), protein binding (GO:0005515)
GO Cellular Component (11): nucleoplasm (GO:0005654), nucleolus (GO:0005730), cytoplasm (GO:0005737), cytosol (GO:0005829), membrane (GO:0016020), cytosolic large ribosomal subunit (GO:0022625), cytosolic ribosome (GO:0022626), extracellular exosome (GO:0070062), ribonucleoprotein complex (GO:1990904), ribosome (GO:0005840), large ribosomal subunit (GO:0015934)
Reactome top-level categories
Rollup of top-11 pathways:
| Category | Pathways |
|---|---|
| Ribosome-associated quality control | 3 |
| Translation | 2 |
| Cap-dependent Translation Initiation | 2 |
| Nonsense-Mediated Decay (NMD) | 2 |
| Eukaryotic Translation Initiation | 1 |
| Eukaryotic Translation Elongation | 1 |
| Influenza Viral RNA Transcription and Replication | 1 |
| Selenoamino acid metabolism | 1 |
| rRNA processing in the nucleus and cytosol | 1 |
| Signaling by ROBO receptors | 1 |
| Cellular response to starvation | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| translation | 2 |
| ribosome biogenesis | 2 |
| regulation of translation | 2 |
| ribosome | 2 |
| nuclear lumen | 2 |
| intracellular membraneless organelle | 2 |
| RNA processing | 1 |
| rRNA metabolic process | 1 |
| peptidyltransferase activity | 1 |
| translational initiation | 1 |
| translational elongation | 1 |
| translational termination | 1 |
| macromolecule biosynthetic process | 1 |
| protein metabolic process | 1 |
| protein biosynthetic process | 1 |
| signal transduction in response to DNA damage | 1 |
| signal transduction by p53 class mediator | 1 |
| response to UV | 1 |
| cellular response to light stimulus | 1 |
| ribonucleoprotein complex biogenesis | 1 |
| DNA damage response, signal transduction by p53 class mediator | 1 |
| regulation of DNA damage response, signal transduction by p53 class mediator | 1 |
| positive regulation of signal transduction by p53 class mediator | 1 |
| positive regulation of gene expression | 1 |
| positive regulation of protein metabolic process | 1 |
| response to gamma radiation | 1 |
| cellular response to ionizing radiation | 1 |
| intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator | 1 |
| regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator | 1 |
| positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage | 1 |
| positive regulation of intrinsic apoptotic signaling pathway by p53 class mediator | 1 |
| cellular response to UV | 1 |
| nucleic acid binding | 1 |
| structural molecule activity | 1 |
| mRNA binding | 1 |
| binding | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| large ribosomal subunit | 1 |
Protein interactions and networks
STRING
3949 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RPL26 | MDM2 | Q00987 | 971 |
| RPL26 | RPL5 | P46777 | 876 |
| RPL26 | RPL11 | P25121 | 873 |
| RPL26 | RPL31 | P12947 | 842 |
| RPL26 | RPS19 | P39019 | 838 |
| RPL26 | TP53 | P04637 | 809 |
| RPL26 | RPL35 | P42766 | 799 |
| RPL26 | RPL27 | P08526 | 794 |
| RPL26 | RPS6 | P08227 | 792 |
| RPL26 | RPS24 | P16632 | 791 |
| RPL26 | RPL35A | P18077 | 781 |
| RPL26 | RPL6 | Q02878 | 779 |
| RPL26 | RPL37 | P02403 | 777 |
| RPL26 | RPL14 | P50914 | 762 |
| RPL26 | NUCLEOLIN | P19338 | 758 |
| RPL26 | RPS26 | P02383 | 758 |
IntAct
177 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| RICTOR | MTOR | psi-mi:“MI:0914”(association) | 0.970 |
| FBL | NOP56 | psi-mi:“MI:0914”(association) | 0.800 |
| XPC | CETN3 | psi-mi:“MI:0914”(association) | 0.730 |
| RACK1 | RPL7 | psi-mi:“MI:0403”(colocalization) | 0.730 |
| DDRGK1 | UFL1 | psi-mi:“MI:0914”(association) | 0.710 |
| RACK1 | RPS17 | psi-mi:“MI:0915”(physical association) | 0.610 |
| RPS6 | IPO7 | psi-mi:“MI:0914”(association) | 0.530 |
| RPL37A | MPHOSPH10 | psi-mi:“MI:0914”(association) | 0.530 |
| RPL30 | RRP8 | psi-mi:“MI:0914”(association) | 0.530 |
| RPL7 | ZBTB24 | psi-mi:“MI:0914”(association) | 0.530 |
| E4F1 | ZBTB24 | psi-mi:“MI:0914”(association) | 0.530 |
| N | NOP56 | psi-mi:“MI:0914”(association) | 0.530 |
| N | RBM47 | psi-mi:“MI:0914”(association) | 0.530 |
| RPL26 | RPL7 | psi-mi:“MI:0914”(association) | 0.530 |
| SYNGAP1 | IGF2BP3 | psi-mi:“MI:0914”(association) | 0.530 |
| PA2G4 | RPL35 | psi-mi:“MI:0915”(physical association) | 0.500 |
| RPL26 | MTOR | psi-mi:“MI:0914”(association) | 0.460 |
| KCNK16 | RPL26 | psi-mi:“MI:0915”(physical association) | 0.400 |
| NFATC2IP | RPL26 | psi-mi:“MI:0915”(physical association) | 0.400 |
| SDC1 | ILVBL | psi-mi:“MI:0915”(physical association) | 0.400 |
| RETREG1 | RPL26 | psi-mi:“MI:0915”(physical association) | 0.370 |
| PCNA | RPL26 | psi-mi:“MI:0915”(physical association) | 0.370 |
| APLP2 | RPL26 | psi-mi:“MI:0915”(physical association) | 0.370 |
| MDM2 | RPL26 | psi-mi:“MI:0915”(physical association) | 0.370 |
| DKC1 | psi-mi:“MI:0914”(association) | 0.350 | |
| Brwd3 | WDR91 | psi-mi:“MI:0914”(association) | 0.350 |
| Srp72 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (525): RPL26 (Affinity Capture-Western), RPL26 (Affinity Capture-MS), RPL26 (Affinity Capture-MS), RPL26 (Affinity Capture-MS), RPL26 (Affinity Capture-MS), RPL26 (Affinity Capture-MS), RPL26 (Affinity Capture-MS), RPL26 (Affinity Capture-MS), RPL26 (Affinity Capture-MS), RPL14 (Co-fractionation), RPL15 (Co-fractionation), RPL17 (Co-fractionation), RPL26 (Co-fractionation), RPL26 (Co-fractionation), RPL26 (Co-fractionation)
ESM2 similar proteins: A5JSS2, A6H769, E2RKA8, G1SHQ2, G1SNY0, G1SQH0, G1SVB0, O09167, O14602, P12749, P14115, P18445, P20280, P30742, P41567, P46776, P46778, P47813, P47832, P49171, P49666, P61251, P61254, P61255, P61256, P61257, P62081, P62082, P62083, P62854, P62855, P62856, P62910, P62911, P62912, Q3SZQ6, Q4R723, Q56JV1, Q56K03, Q5E938
Diamond homologs: A0A1D8PCQ5, A0B9V9, A0RVY4, A1RS05, A1RWS4, A2BMD0, A2SPL3, A3DNB8, A3MWZ8, A4FWB0, A4WLL3, A4YCX7, A5UL77, A6UQ55, A6UWU9, A6VGZ6, A7I5Q0, A8ACD3, A8MB21, A9A5I4, B1L777, G1SQH0, O05633, O26122, O28365, O59429, P05743, P10972, P12749, P14034, P41960, P47832, P49629, P51414, P53221, P54038, P60663, P60746, P61254, P61255
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| MDM2 | “down-regulates quantity by destabilization” | RPL26 | ubiquitination |
| RPL26 | “form complex” | “60S cytosolic large ribosomal subunit” | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 152 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| SARS-CoV-1 modulates host translation machinery | 7 | 20.2× | 2e-06 |
| Eukaryotic Translation Termination | 17 | 19.1× | 3e-15 |
| Peptide chain elongation | 16 | 19.0× | 1e-14 |
| Viral mRNA Translation | 16 | 19.0× | 1e-14 |
| PELO:HBS1L and ABCE1 dissociate a ribosome on a non-stop mRNA | 16 | 18.8× | 1e-14 |
| Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) | 17 | 18.7× | 3e-15 |
| Selenocysteine synthesis | 16 | 18.0× | 2e-14 |
| Formation of a pool of free 40S subunits | 17 | 17.8× | 5e-15 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| cytoplasmic translation | 20 | 28.3× | 6e-21 |
| stress granule assembly | 5 | 23.0× | 4e-04 |
| translational initiation | 6 | 16.4× | 3e-04 |
| rRNA processing | 15 | 16.2× | 7e-12 |
| translation | 18 | 14.1× | 3e-13 |
| ribosomal small subunit biogenesis | 8 | 13.9× | 3e-05 |
| negative regulation of translation | 7 | 10.5× | 7e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
101 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 3 |
| Likely pathogenic | 3 |
| Uncertain significance | 39 |
| Likely benign | 38 |
| Benign | 8 |
Top pathogenic / likely-pathogenic (6)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1339822 | NM_000987.5(RPL26):c.341del (p.Asp114fs) | Pathogenic |
| 2627100 | NM_000987.5(RPL26):c.87del (p.Met30fs) | Pathogenic |
| 39740 | NM_000987.5(RPL26):c.120_121del (p.Lys41fs) | Pathogenic |
| 2627098 | NM_000987.5(RPL26):c.-6+3_-6+25del | Likely pathogenic |
| 2627099 | NM_000987.5(RPL26):c.-5-2A>G | Likely pathogenic |
| 4072391 | NM_000987.5(RPL26):c.36_39del (p.Ser12fs) | Likely pathogenic |
SpliceAI
764 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:8377561:A:AC | donor_gain | 1.0000 |
| 17:8377562:C:CC | donor_gain | 1.0000 |
| 17:8377566:ATT:A | donor_gain | 1.0000 |
| 17:8377568:T:A | donor_gain | 1.0000 |
| 17:8377592:T:TA | donor_gain | 1.0000 |
| 17:8379792:CTACC:C | donor_loss | 1.0000 |
| 17:8379793:TACC:T | donor_loss | 1.0000 |
| 17:8379794:ACC:A | donor_loss | 1.0000 |
| 17:8379795:CCTTG:C | donor_gain | 1.0000 |
| 17:8379933:CAAC:C | acceptor_gain | 1.0000 |
| 17:8379936:CCTAA:C | acceptor_loss | 1.0000 |
| 17:8379938:T:C | acceptor_loss | 1.0000 |
| 17:8382139:ACACC:A | donor_loss | 1.0000 |
| 17:8382140:CA:C | donor_loss | 1.0000 |
| 17:8382140:CACC:C | donor_loss | 1.0000 |
| 17:8382141:A:T | donor_loss | 1.0000 |
| 17:8382142:C:A | donor_loss | 1.0000 |
| 17:8382142:CCT:C | donor_loss | 1.0000 |
| 17:8382311:TTTGG:T | acceptor_gain | 1.0000 |
| 17:8382312:TTGG:T | acceptor_gain | 1.0000 |
| 17:8382313:TGG:T | acceptor_gain | 1.0000 |
| 17:8382314:GG:G | acceptor_gain | 1.0000 |
| 17:8382315:GC:G | acceptor_loss | 1.0000 |
| 17:8382316:C:CC | acceptor_gain | 1.0000 |
| 17:8382316:CTAA:C | acceptor_loss | 1.0000 |
| 17:8383045:T:TA | donor_gain | 1.0000 |
| 17:8377575:T:C | donor_gain | 0.9900 |
| 17:8377688:ACCAC:A | acceptor_gain | 0.9900 |
| 17:8377689:CCAC:C | acceptor_gain | 0.9900 |
| 17:8377689:CCACC:C | acceptor_gain | 0.9900 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000341371 (17:8377729 A>G,T), RS1000390023 (17:8383203 C>G,T), RS1000610630 (17:8383122 T>G), RS1000860551 (17:8377945 A>G), RS1001291879 (17:8377887 C>A,T), RS1001460331 (17:8379111 TAGG>T), RS1001498080 (17:8383674 G>A), RS1001614030 (17:8384043 T>G), RS1001753398 (17:8382771 C>T), RS1002143680 (17:8377431 A>C), RS1002347414 (17:8380045 TAAA>T,TA,TAA,TAAAA), RS1002502436 (17:8384913 C>A), RS1002747692 (17:8378851 G>A), RS1002871984 (17:8380411 T>C), RS1003754454 (17:8381398 T>C)
Disease associations
OMIM: gene MIM:603704 | disease phenotypes: MIM:105650, MIM:614900
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Diamond-Blackfan anemia 11 | Strong | Autosomal dominant |
| Diamond-Blackfan anemia | Supportive | Autosomal dominant |
Mondo (2): Diamond-Blackfan anemia (MONDO:0015253), Diamond-Blackfan anemia 11 (MONDO:0013964)
Orphanet (1): Diamond-Blackfan anemia (Orphanet:124)
HPO phenotypes
76 total (30 of 76 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000047 | Hypospadias |
| HP:0000085 | Horseshoe kidney |
| HP:0000104 | Renal agenesis |
| HP:0000119 | Abnormality of the genitourinary system |
| HP:0000122 | Unilateral renal agenesis |
| HP:0000185 | Cleft soft palate |
| HP:0000218 | High palate |
| HP:0000234 | Abnormality of the head |
| HP:0000252 | Microcephaly |
| HP:0000286 | Epicanthus |
| HP:0000294 | Low anterior hairline |
| HP:0000316 | Hypertelorism |
| HP:0000347 | Micrognathia |
| HP:0000369 | Low-set ears |
| HP:0000402 | Stenosis of the external auditory canal |
| HP:0000413 | Atresia of the external auditory canal |
| HP:0000431 | Wide nasal bridge |
| HP:0000465 | Webbed neck |
| HP:0000470 | Short neck |
| HP:0000486 | Strabismus |
| HP:0000508 | Ptosis |
| HP:0000519 | Developmental cataract |
| HP:0000625 | Eyelid coloboma |
| HP:0000912 | Sprengel anomaly |
| HP:0000980 | Pallor |
| HP:0001087 | Developmental glaucoma |
| HP:0001199 | Triphalangeal thumb |
| HP:0001227 | Abnormality of the thenar eminence |
| HP:0001254 | Lethargy |
GWAS associations
0 associations (top):
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D029503 | Anemia, Diamond-Blackfan | C15.378.050.085.080.090; C15.378.050.750.500; C15.378.190.223.500.500.090; C16.320.077.090 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL3987582 (PROTEIN NUCLEIC-ACID COMPLEX), CHEMBL6067573 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL6067484 | GENTAMICIN SULFATE | 4 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
50 potent at pChembl≥5 of 54 total, top 49 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.79 | Kd | 16.24 | nM | CHEMBL5653589 |
| 7.79 | ED50 | 16.24 | nM | CHEMBL5653589 |
| 6.52 | IC50 | 300 | nM | CHEMBL4109308 |
| 6.42 | IC50 | 380 | nM | CHEMBL4109308 |
| 6.42 | IC50 | 380 | nM | CHEMBL4574496 |
| 6.41 | IC50 | 390 | nM | CHEMBL4126894 |
| 6.39 | IC50 | 410 | nM | CHEMBL4114159 |
| 6.35 | IC50 | 450 | nM | CHEMBL4126496 |
| 6.30 | IC50 | 500 | nM | CHEMBL4574496 |
| 6.30 | IC50 | 500 | nM | CHEMBL4560206 |
| 6.16 | IC50 | 690 | nM | CHEMBL4130157 |
| 6.15 | IC50 | 710 | nM | CHEMBL4108338 |
| 6.11 | IC50 | 780 | nM | CHEMBL4114159 |
| 6.09 | IC50 | 820 | nM | CHEMBL4109308 |
| 6.07 | IC50 | 850 | nM | CHEMBL4107559 |
| 6.07 | IC50 | 850 | nM | CHEMBL4533299 |
| 6.05 | IC50 | 900 | nM | CHEMBL4126894 |
| 6.05 | IC50 | 900 | nM | CHEMBL4126496 |
| 6.04 | IC50 | 920 | nM | CHEMBL4554909 |
| 5.97 | IC50 | 1060 | nM | CHEMBL4128388 |
| 5.89 | IC50 | 1290 | nM | CHEMBL4130157 |
| 5.86 | IC50 | 1370 | nM | CHEMBL4107559 |
| 5.84 | IC50 | 1440 | nM | CHEMBL4108338 |
| 5.81 | IC50 | 1540 | nM | CHEMBL4534859 |
| 5.76 | IC50 | 1730 | nM | CHEMBL4534859 |
| 5.69 | IC50 | 2050 | nM | CHEMBL4566239 |
| 5.68 | IC50 | 2080 | nM | CHEMBL4446635 |
| 5.66 | IC50 | 2210 | nM | CHEMBL4446635 |
| 5.66 | EC50 | 2200 | nM | CHEMBL4464929 |
| 5.64 | IC50 | 2270 | nM | CHEMBL4533299 |
| 5.63 | IC50 | 2330 | nM | CHEMBL4566239 |
| 5.62 | IC50 | 2380 | nM | CHEMBL4128388 |
| 5.58 | IC50 | 2630 | nM | CHEMBL4128250 |
| 5.55 | IC50 | 2820 | nM | CHEMBL4127458 |
| 5.53 | IC50 | 2970 | nM | CHEMBL4127311 |
| 5.51 | IC50 | 3080 | nM | CHEMBL4126072 |
| 5.46 | IC50 | 3500 | nM | CHEMBL4525277 |
| 5.44 | IC50 | 3630 | nM | CHEMBL4469712 |
| 5.39 | IC50 | 4100 | nM | CHEMBL4128560 |
| 5.37 | IC50 | 4300 | nM | CHEMBL4127016 |
| 5.36 | IC50 | 4380 | nM | CHEMBL4527910 |
| 5.21 | Kd | 6181 | nM | CHEMBL3752910 |
| 5.21 | ED50 | 6181 | nM | CHEMBL3752910 |
| 5.16 | IC50 | 7000 | nM | CHEMBL4109308 |
| 5.13 | IC50 | 7400 | nM | CHLORAMPHENICOL SULFATE SALT |
| 5.09 | IC50 | 8040 | nM | CHEMBL4128250 |
| 5.08 | IC50 | 8370 | nM | CHEMBL4128250 |
| 5.03 | IC50 | 9320 | nM | CHEMBL4127016 |
| 5.03 | IC50 | 9240 | nM | CHEMBL4128560 |
PubChem BioAssay actives
48 with measured affinity, of 209 total; 28 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149256: Binding affinity to human RPL26 incubated for 45 mins by Kinobead based pull down assay | kd | 0.0162 | uM |
| N-(3-chloro-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-4-(triazolo[4,5-b]pyridin-3-yl)benzamide | 1585498: Binding affinity to 80S ribosome in human HuH7 cells expressing human C-terminal V5/6-His-tagged PCSK9 assessed as inhibition of PCSK9 secretion after 16 to 24 hrs by AlphaLISA method | ic50 | 0.3000 | uM |
| N-(3-chloro-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-3-[4-(triazolo[4,5-b]pyridin-3-yl)phenyl]propanamide | 1532845: Binding affinity to 80S ribosome in human HuH7 cells harboring human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.3800 | uM |
| N-isoquinolin-1-yl-N-[(3R)-piperidin-3-yl]-4-(triazolo[4,5-b]pyridin-3-yl)benzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.3900 | uM |
| N-(3-chloro-2-pyridinyl)-4-(6-methyltriazolo[4,5-b]pyridin-3-yl)-N-[(3R)-piperidin-3-yl]benzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.4100 | uM |
| N-(3-chloro-2-pyridinyl)-4-(5-methyltriazolo[4,5-b]pyridin-3-yl)-N-[(3R)-piperidin-3-yl]benzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.4500 | uM |
| N-(1-methylpyrrolo[2,3-c]pyridin-7-yl)-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 0.5000 | uM |
| N-isoquinolin-1-yl-N-[(3R)-piperidin-3-yl]-4-pyrazolo[1,5-a]pyrimidin-3-ylbenzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.6900 | uM |
| N-(3-chloro-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-5-(triazolo[4,5-b]pyridin-3-yl)pyridine-2-carboxamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.7100 | uM |
| N-(3-chloro-2-pyridinyl)-3-[5-(6-methyltriazolo[4,5-b]pyridin-3-yl)-2-pyridinyl]-N-[(3R)-piperidin-3-yl]propanamide | 1532845: Binding affinity to 80S ribosome in human HuH7 cells harboring human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.8500 | uM |
| N-(3-chloro-2-pyridinyl)-5-(6-methyltriazolo[4,5-b]pyridin-3-yl)-N-[(3R)-piperidin-3-yl]pyridine-2-carboxamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.8500 | uM |
| N-(3-methyl-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-4-pyrazolo[1,5-a]pyrimidin-3-ylpiperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 0.9200 | uM |
| N-isoquinolin-1-yl-4-(1-methylpyrazol-4-yl)-N-[(3R)-piperidin-3-yl]benzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 1.0600 | uM |
| N-isoquinolin-1-yl-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 1.5400 | uM |
| N-(3-methyl-2-pyridinyl)-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532845: Binding affinity to 80S ribosome in human HuH7 cells harboring human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 2.0500 | uM |
| N-(3-chloro-2-pyridinyl)-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 2.0800 | uM |
| N-(5,8-dihydroisoquinolin-1-yl)-3-(4-methoxyphenyl)-N-[(3R)-piperidin-3-yl]propanamide | 1584424: Inhibition of human 80S ribosome-mediated PCSK9 translation expressed in CHO-K1 cells assessed as reduction in PCSK9 secretion | ec50 | 2.2000 | uM |
| N-isoquinolin-1-yl-3-(4-methoxyphenyl)-N-[(3R)-piperidin-3-yl]propanamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 2.6300 | uM |
| N-(3-chloro-2-pyridinyl)-4-(6-methylpyrazin-2-yl)-N-[(3R)-piperidin-3-yl]benzamide | 1497963: Binding affinity to 80S ribosome in human HuH7 cells assessed as inhibition of PCSK9 mRNA translation after overnight incubation by ELISA | ic50 | 2.8200 | uM |
| N-(3-chloro-2-pyridinyl)-4-[6-(dimethylamino)pyrazin-2-yl]-N-[(3R)-piperidin-3-yl]benzamide | 1497963: Binding affinity to 80S ribosome in human HuH7 cells assessed as inhibition of PCSK9 mRNA translation after overnight incubation by ELISA | ic50 | 2.9700 | uM |
| N-(3-chloro-2-pyridinyl)-4-[6-(methylamino)pyrazin-2-yl]-N-[(3R)-piperidin-3-yl]benzamide | 1497963: Binding affinity to 80S ribosome in human HuH7 cells assessed as inhibition of PCSK9 mRNA translation after overnight incubation by ELISA | ic50 | 3.0800 | uM |
| N-isoquinolin-1-yl-4-(6-methyl-1,2-benzoxazol-3-yl)-N-[(3R)-piperidin-3-yl]piperazine-1-carboxamide | 1532845: Binding affinity to 80S ribosome in human HuH7 cells harboring human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 3.5000 | uM |
| N-(3-methylpyrazin-2-yl)-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 3.6300 | uM |
| N-(3-chloro-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-6-(triazolo[4,5-b]pyridin-3-yl)pyridine-3-carboxamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 4.1000 | uM |
| N-isoquinolin-1-yl-N-[(3R)-piperidin-3-yl]-4-pyrazin-2-ylbenzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 4.3000 | uM |
| 4-(2-fluorophenyl)-N-(3-methyl-2-pyridinyl)-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 4.3800 | uM |
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149256: Binding affinity to human RPL26 incubated for 45 mins by Kinobead based pull down assay | kd | 6.1813 | uM |
| 2,2-dichloro-N-[(1R,2R)-1,3-dihydroxy-1-(4-nitrophenyl)propan-2-yl]acetamide;sulfuric acid | 717551: Inhibition of mitochondrial ribosome-mediated protein synthesis in human HeLa cells assessed as {35S]methionine incorporation by autoradiography | ic50 | 7.4000 | uM |
CTD chemical–gene interactions
47 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | decreases expression, increases activity, increases expression, increases methylation | 3 |
| Particulate Matter | affects cotreatment, increases abundance, increases expression, decreases expression | 3 |
| bisphenol A | affects expression, decreases expression | 2 |
| Arsenic Trioxide | increases expression | 2 |
| Air Pollutants | affects expression, increases abundance, decreases expression | 2 |
| Valproic Acid | affects cotreatment, increases expression | 2 |
| Cadmium Chloride | affects localization, increases expression | 2 |
| FR900359 | increases phosphorylation | 1 |
| bisphenol F | increases expression | 1 |
| dicrotophos | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| pyrogallol 1,3-dimethyl ether | decreases expression, affects cotreatment, affects localization, increases expression | 1 |
| beta-lapachone | increases expression | 1 |
| arsenite | affects binding, increases reaction | 1 |
| coumarin | decreases phosphorylation | 1 |
| azoxystrobin | increases expression | 1 |
| chloropicrin | decreases expression | 1 |
| deguelin | increases expression | 1 |
| 4-chloro-N-((4-(1,1-dimethylethyl)phenyl)methyl)-3-ethyl-1-methyl-1H-pyrazole-5-carboxamide | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| pyrimidifen | increases expression | 1 |
| ICG 001 | decreases expression | 1 |
| bisphenol B | increases expression | 1 |
| abrine | decreases expression | 1 |
| pyrachlostrobin | increases expression | 1 |
| bisphenol S | increases expression | 1 |
| LDN 193189 | affects cotreatment, decreases expression | 1 |
| picoxystrobin | increases expression | 1 |
| MT19c compound | increases expression | 1 |
| bisphenol AF | increases expression | 1 |
ChEMBL screening assays
90 unique, capped per target: 90 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1920845 | Binding | Induction of ribosome to readthrough in human A-T lymphoblastoid cells assessed as ATM ser1981 autophosphorylation at 30 uM after 4 days by PTT-ELISA assay | Synthesis and evaluation of compounds that induce readthrough of premature termination codons. — Bioorg Med Chem Lett |
Clinical trials (associated diseases)
38 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00673608 | PHASE4 | COMPLETED | Magnetic Resonance Imaging (MRI) Assessments of the Heart and Liver Iron Load in Patients With Transfusion Induced Iron Overload |
| NCT00235391 | PHASE3 | COMPLETED | Expanded Access of Deferasirox to Patients With Congenital Disorders of Red Blood Cells and Chronic Iron Overload |
| NCT00001962 | PHASE2 | TERMINATED | A Study to Determine Whether Therapy With Daclizumab Will Benefit Patients With Bone Marrow Failure |
| NCT00011505 | PHASE2 | COMPLETED | Mobilization of Stem Cells With G-CSF for Collection From Patients With Diamond-Blackfan Anemia |
| NCT00301834 | PHASE2 | COMPLETED | Alemtuzumab, Fludarabine, and Busulfan Followed By Donor Stem Cell Transplant in Treating Young Patients With Hematologic Disorders |
| NCT00957931 | PHASE2 | COMPLETED | Allo-HCT MUD for Non-malignant Red Blood Cell (RBC) Disorders: Sickle Cell, Thal, and DBA: Reduced Intensity Conditioning, Co-tx MSCs |
| NCT01529827 | PHASE2 | COMPLETED | Fludarabine Phosphate, Melphalan, and Low-Dose Total-Body Irradiation Followed by Donor Peripheral Blood Stem Cell Transplant in Treating Patients With Hematologic Malignancies |
| NCT02386267 | PHASE2 | UNKNOWN | L-leucine in Diamond Blackfan Anemia Patients |
| NCT02512679 | PHASE2 | TERMINATED | Related Hematopoietic Stem Cell Transplantation (HSCT) for Genetic Diseases of Blood Cells |
| NCT03333486 | PHASE2 | TERMINATED | Fludarabine Phosphate, Cyclophosphamide, Total Body Irradiation, and Donor Stem Cell Transplant in Treating Patients With Blood Cancer |
| NCT04099966 | PHASE2 | RECRUITING | AlloSCT for Malignant and Non-malignant Hematologic Diseases Utilizing Alpha/Beta T Cell and CD19+ B Cell Depletion |
| NCT04965597 | PHASE2 | COMPLETED | Treosulfan-Based Conditioning Regimen Before a Blood or Bone Marrow Transplant for the Treatment of Bone Marrow Failure Diseases (BMT CTN 1904) |
| NCT01586455 | PHASE1 | COMPLETED | Human Placental-Derived Stem Cell Transplantation |
| NCT01917708 | PHASE1 | COMPLETED | Bone Marrow Transplant With Abatacept for Non-Malignant Diseases |
| NCT00176852 | PHASE2/PHASE3 | COMPLETED | Stem Cell Transplant for Hemoglobinopathy |
| NCT00176878 | PHASE2/PHASE3 | COMPLETED | Stem Cell Transplant for Bone Marrow Failure Syndromes |
| NCT00305708 | PHASE1/PHASE2 | COMPLETED | Busulfan, Antithymocyte Globulin, and Fludarabine Followed By a Donor Stem Cell Transplant in Treating Young Patients With Blood Disorders, Bone Marrow Disorders, Chronic Myelogenous Leukemia in First Chronic Phase, or Acute Myeloid Leukemia in First Remission |
| NCT01362595 | PHASE1/PHASE2 | COMPLETED | Pilot Phase I/II Study of Amino Acid Leucine in Treatment of Patients With Transfusion-Dependent Diamond Blackfan Anemia |
| NCT01419704 | PHASE1/PHASE2 | WITHDRAWN | Phase I/II Pilot Study of Mixed Chimerism to Treat Hemoglobinopathies |
| NCT01464164 | PHASE1/PHASE2 | TERMINATED | Safety and Efficacy Study of Sotatercept in Adults With Transfusion Dependent Diamond Blackfan Anemia |
| NCT01966367 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | CD34+ (Non-Malignant) Stem Cell Selection for Patients Receiving Allogeneic Stem Cell Transplantation |
| NCT02065869 | PHASE1/PHASE2 | TERMINATED | Safety Study of Gene Modified Donor T-cells Following TCRαβ+ Depleted Stem Cell Transplant |
| NCT03513328 | PHASE1/PHASE2 | COMPLETED | Conditioning Regimen for Allogeneic Hematopoietic Stem-Cell Transplantation |
| NCT03653338 | PHASE1/PHASE2 | RECRUITING | T-Cell Depleted Alternative Donor Bone Marrow Transplant for Sickle Cell Disease (SCD) and Other Anemias |
| NCT03733249 | PHASE1/PHASE2 | TERMINATED | Long Term Follow-up Study for Patients Enrolled on the BP-004 Clinical Study |
| NCT03966053 | PHASE1/PHASE2 | TERMINATED | The Use of Trifluoperazine in Transfusion Dependent DBA |
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| NCT01319851 | Not specified | TERMINATED | Alefacept and Allogeneic Hematopoietic Stem Cell Transplantation |
| NCT01758042 | Not specified | COMPLETED | Bone Marrow and Kidney Transplant for Patients With Chronic Kidney Disease and Blood Disorders |
| NCT01913548 | Not specified | COMPLETED | Multi-Center Study of Iron Overload: Survey Study (MCSIO) |
| NCT02179359 | Not specified | TERMINATED | Hematopoietic Stem Cell Transplant for High Risk Hemoglobinopathies |
| NCT02720679 | Not specified | RECRUITING | Investigation of the Genetics of Hematologic Diseases |
| NCT03050268 | Not specified | RECRUITING | Familial Investigations of Childhood Cancer Predisposition |
| NCT05687474 | Not specified | COMPLETED | Baby Detect : Genomic Newborn Screening |
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Related Atlas pages
- Associated diseases: Diamond-Blackfan anemia 11, Diamond-Blackfan anemia
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Diamond-Blackfan anemia, Diamond-Blackfan anemia 11