RPL36
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Also known as DKFZp566B023L36eL36
Summary
RPL36 (ribosomal protein L36, HGNC:13631) is a protein-coding gene on chromosome 19p13.3, encoding RPL36 alternative reading frame protein (C0HME6). Inhibits C2CD2L/TMEM24-dependent transport of phosphatidylinositol, the precursor of phosphatidylinositol 4,5-bisphosphate (PI(4,5)P2), from its site of synthesis in the endoplasmic reticulum to the cell membrane. It is a common-essential gene (DepMap: required in 100.0% of cancer cell lines).
Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 60S subunit. The protein belongs to the L36E family of ribosomal proteins. It is located in the cytoplasm. Transcript variants derived from alternative splicing exist; they encode the same protein. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome.
Source: NCBI Gene 25873 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 22 total
- Cancer dependency (DepMap): dependent in 100.0% of screened cell lines (common-essential)
- MANE Select transcript:
NM_033643
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:13631 |
| Approved symbol | RPL36 |
| Name | ribosomal protein L36 |
| Location | 19p13.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DKFZp566B023, L36, eL36 |
| Ensembl gene | ENSG00000130255 |
| Ensembl biotype | protein_coding |
| OMIM | 617893 |
| Entrez | 25873 |
Gene structure
Transcript identifiers
Ensembl transcripts: 19 — 17 protein_coding, 1 protein_coding_CDS_not_defined, 1 retained_intron
ENST00000347512, ENST00000394580, ENST00000577222, ENST00000579446, ENST00000579649, ENST00000582380, ENST00000582463, ENST00000590786, ENST00000913550, ENST00000913551, ENST00000913552, ENST00000913553, ENST00000913554, ENST00000913555, ENST00000913556, ENST00000913557, ENST00000913558, ENST00000913559, ENST00000913560
RefSeq mRNA: 2 — MANE Select: NM_033643
NM_015414, NM_033643
CCDS: CCDS12147
Canonical transcript exons
ENST00000347512 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001158924 | 5691319 | 5691453 |
| ENSE00002715318 | 5691532 | 5691875 |
| ENSE00002725662 | 5690295 | 5690327 |
| ENSE00002742583 | 5690506 | 5690600 |
Expression profiles
Bgee: expression breadth ubiquitous, 288 present calls, max score 99.80.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 442.8576 / max 2396.3547, expressed in 1827 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 173424 | 299.9755 | 1827 |
| 173423 | 139.9757 | 1824 |
| 173415 | 3.3874 | 1178 |
| 173425 | 2.9064 | 1287 |
Top tissues by expression
288 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| ganglionic eminence | UBERON:0004023 | 99.80 | gold quality |
| cortical plate | UBERON:0005343 | 99.78 | gold quality |
| left ovary | UBERON:0002119 | 99.77 | gold quality |
| ventricular zone | UBERON:0003053 | 99.77 | gold quality |
| embryo | UBERON:0000922 | 99.74 | gold quality |
| ovary | UBERON:0000992 | 99.74 | gold quality |
| right ovary | UBERON:0002118 | 99.74 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 99.73 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 99.73 | gold quality |
| right adrenal gland | UBERON:0001233 | 99.72 | gold quality |
| left adrenal gland | UBERON:0001234 | 99.72 | gold quality |
| right uterine tube | UBERON:0001302 | 99.72 | gold quality |
| skin of abdomen | UBERON:0001416 | 99.72 | gold quality |
| adrenal cortex | UBERON:0001235 | 99.71 | gold quality |
| skin of leg | UBERON:0001511 | 99.71 | gold quality |
| penis | UBERON:0000989 | 99.70 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 99.70 | gold quality |
| endocervix | UBERON:0000458 | 99.69 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 99.69 | gold quality |
| granulocyte | CL:0000094 | 99.68 | gold quality |
| nipple | UBERON:0002030 | 99.68 | gold quality |
| adenohypophysis | UBERON:0002196 | 99.68 | gold quality |
| body of pancreas | UBERON:0001150 | 99.67 | gold quality |
| zone of skin | UBERON:0000014 | 99.66 | gold quality |
| body of uterus | UBERON:0009853 | 99.66 | gold quality |
| ectocervix | UBERON:0012249 | 99.66 | gold quality |
| adrenal gland | UBERON:0002369 | 99.65 | gold quality |
| gingival epithelium | UBERON:0001949 | 99.64 | gold quality |
| prostate gland | UBERON:0002367 | 99.64 | gold quality |
| pituitary gland | UBERON:0000007 | 99.63 | gold quality |
Single-cell (SCXA)
Detected in 44 experiment(s), a significant marker in 10.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-9067 | yes | 6251.29 |
| E-CURD-122 | yes | 97.72 |
| E-CURD-88 | yes | 66.07 |
| E-MTAB-9221 | yes | 57.37 |
| E-CURD-112 | yes | 41.41 |
| E-MTAB-10042 | yes | 14.52 |
| E-HCAD-35 | yes | 9.40 |
| E-MTAB-9801 | yes | 6.61 |
| E-HCAD-31 | yes | 4.41 |
| E-GEOD-125970 | no | 7118.15 |
| E-MTAB-8410 | no | 6305.17 |
| E-MTAB-6701 | no | 6226.33 |
| E-CURD-85 | no | 5724.76 |
| E-HCAD-4 | no | 5595.89 |
| E-HCAD-24 | no | 5513.41 |
Regulation
Is transcription factor: no
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 100.0% of screened cell lines, common-essential.
Literature-anchored findings (GeneRIF, showing 4)
- RPL36 may be involved in the early stage of hepatocarcinogenesis, and it can be used as an independent and potential prognostic marker for resected hepatocellular carcinoma. (PMID:22029674)
- These results provide evidence for a novel cell cycle regulatory network in glioma comprising the Long non-coding PLAC2 along with STAT1 and RPL36. (PMID:28922548)
- Alt-RPL36 downregulates the PI3K-AKT-mTOR signaling pathway by interacting with TMEM24. (PMID:33479206)
- The m6A reader IGF2BP1 attenuates the stability of RPL36 and cell proliferation to mediate benzene hematotoxicity by recognizing m6A modification. (PMID:38367942)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | rpl36 | ENSDARG00000100588 |
| mus_musculus | Rpl36 | ENSMUSG00000057863 |
| rattus_norvegicus | Rpl36l2 | ENSRNOG00000002340 |
| rattus_norvegicus | AABR07007675.1 | ENSRNOG00000029988 |
| rattus_norvegicus | Rpl36l3 | ENSRNOG00000031947 |
| rattus_norvegicus | ENSRNOG00000079694 |
Protein
Protein identifiers
RPL36 alternative reading frame protein — C0HME6 (reviewed: C0HME6, Q9Y3U8)
All UniProt accessions (3): Q9Y3U8, J3KTD3, J3QSB5
UniProt curated annotations — full annotation on UniProt →
Function. Inhibits C2CD2L/TMEM24-dependent transport of phosphatidylinositol, the precursor of phosphatidylinositol 4,5-bisphosphate (PI(4,5)P2), from its site of synthesis in the endoplasmic reticulum to the cell membrane. This leads to down-regulation of the PI3K-AKT-mTOR signaling pathway.
Subunit / interactions. Interacts (when phosphorylated) with C2CD2L/TMEM24 (via the SMP-LBD and C2 domains); the interaction is required for localization of alt-RPL36 to the endoplasmic reticulum and inhibits C2CD2L-dependent transport of phosphatidylinositol from the endoplasmic reticulum to the cell membrane.
Subcellular location. Endoplasmic reticulum.
Post-translational modifications. Phosphorylation is regulated by cytosolic calcium levels. Increased calcium levels reduce phosphorylation at Ser-19, Ser-140 and Ser-142 but increase phosphorylation at Ser-22.
Miscellaneous. Produced by an alternative reading frame of the RPL36 gene which also produces ribosomal protein L36, a component of the large ribosomal subunit. Translation of alt-RPL36 initiates from a non-canonical GUG start codon upstream of the AUG start codon used to produce ribosomal protein L36.
RefSeq proteins (2): NP_056229, NP_378669* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000509 | Ribosomal_eL36 | Family |
| IPR038097 | Ribosomal_eL36_sf | Homologous_superfamily |
Pfam: PF01158
UniProt features (21 total): mutagenesis site 11, modified residue 5, chain 2, initiator methionine 1, sequence variant 1, sequence conflict 1
Structure
Experimental structures (PDB)
194 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8A3D | ELECTRON MICROSCOPY | 1.67 |
| 8GLP | ELECTRON MICROSCOPY | 1.67 |
| 8QYX | ELECTRON MICROSCOPY | 1.78 |
| 8QOI | ELECTRON MICROSCOPY | 1.9 |
| 9O3W | ELECTRON MICROSCOPY | 1.9 |
| 8YOO | ELECTRON MICROSCOPY | 2 |
| 9C3H | ELECTRON MICROSCOPY | 2 |
| 9I2D | ELECTRON MICROSCOPY | 2.19 |
| 9PBE | ELECTRON MICROSCOPY | 2.19 |
| 8QFD | ELECTRON MICROSCOPY | 2.2 |
| 8YOP | ELECTRON MICROSCOPY | 2.2 |
| 9GUL | ELECTRON MICROSCOPY | 2.2 |
| 9O3V | ELECTRON MICROSCOPY | 2.2 |
| 9O3Y | ELECTRON MICROSCOPY | 2.2 |
| 8JDK | ELECTRON MICROSCOPY | 2.26 |
| 8G5Y | ELECTRON MICROSCOPY | 2.29 |
| 9S3D | ELECTRON MICROSCOPY | 2.32 |
| 9RPV | ELECTRON MICROSCOPY | 2.35 |
| 9S3B | ELECTRON MICROSCOPY | 2.38 |
| 7OW7 | ELECTRON MICROSCOPY | 2.4 |
| 8K2C | ELECTRON MICROSCOPY | 2.4 |
| 8XSX | ELECTRON MICROSCOPY | 2.4 |
| 9SPF | ELECTRON MICROSCOPY | 2.4 |
| 9SPI | ELECTRON MICROSCOPY | 2.4 |
| 8JDL | ELECTRON MICROSCOPY | 2.42 |
| 9S3C | ELECTRON MICROSCOPY | 2.42 |
| 8FKV | ELECTRON MICROSCOPY | 2.47 |
| 9QLO | ELECTRON MICROSCOPY | 2.47 |
| 8FLE | ELECTRON MICROSCOPY | 2.48 |
| 9P8B | ELECTRON MICROSCOPY | 2.48 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9Y3U8-F1 | 93.20 | 0.88 |
No AlphaFold model available for C0HME6 — AlphaFold DB does not currently provide models for proteins above ~3000 aa.
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
C0HME6 (canonical)
Post-translational modifications (4): 19, 22, 140, 142
Mutagenesis-validated functional residues (11):
| Position | Phenotype |
|---|---|
| 98 | reduces alt-rpl36 protein levels. reduces phosphorylation. reduces interaction with c2cd2l. |
| 104 | no effect on alt-rpl36 protein levels. reduces phosphorylation. reduces interaction with c2cd2l. |
| 115 | reduces alt-rpl36 protein levels. reduces phosphorylation. reduces interaction with c2cd2l. |
| 118 | no effect on alt-rpl36 protein levels. reduces phosphorylation. no effect on interaction with c2cd2l. |
| 140 | reduces phosphorylation. abolishes phosphorylation and abolishes interaction with c2cd2l; when associated with a-19; a-2 |
| 142 | reduces phosphorylation. abolishes phosphorylation and abolishes interaction with c2cd2l; when associated with a-19; a-2 |
| 19 | reduces phosphorylation. abolishes phosphorylation and abolishes interaction with c2cd2l; when associated with a-22; a-1 |
| 22 | reduces phosphorylation. abolishes phosphorylation and abolishes interaction with c2cd2l; when associated with a-19; a-1 |
| 50 | reduces alt-rpl36 protein levels. reduces phosphorylation. abolishes interaction with c2cd2l. |
| 73 | no effect on alt-rpl36 protein levels. no effect on phosphorylation. reduces interaction with c2cd2l. |
| 93 | reduces alt-rpl36 protein levels. reduces phosphorylation. no effect on interaction with c2cd2l. |
Q9Y3U8
Post-translational modifications (1): 62
Function
Pathways and Gene Ontology
Reactome pathways
16 pathways
| ID | Pathway |
|---|---|
| R-HSA-156827 | L13a-mediated translational silencing of Ceruloplasmin expression |
| R-HSA-156902 | Peptide chain elongation |
| R-HSA-1799339 | SRP-dependent cotranslational protein targeting to membrane |
| R-HSA-192823 | Viral mRNA Translation |
| R-HSA-2408557 | Selenocysteine synthesis |
| R-HSA-6791226 | Major pathway of rRNA processing in the nucleolus and cytosol |
| R-HSA-72689 | Formation of a pool of free 40S subunits |
| R-HSA-72706 | GTP hydrolysis and joining of the 60S ribosomal subunit |
| R-HSA-72764 | Eukaryotic Translation Termination |
| R-HSA-9010553 | Regulation of expression of SLITs and ROBOs |
| R-HSA-9633012 | Response of EIF2AK4 (GCN2) to amino acid deficiency |
| R-HSA-975956 | Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) |
| R-HSA-975957 | Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) |
| R-HSA-9954709 | Ribosome Quality Control (RQC) complex extracts and degrades nascent peptide |
| R-HSA-9954714 | PELO:HBS1L and ABCE1 dissociate a ribosome on a non-stop mRNA |
| R-HSA-9954716 | ZNF598 and the Ribosome-associated Quality Trigger (RQT) complex dissociate a ribosome stalled on a no-go mRNA |
MSigDB gene sets: 249 (showing top):
GOBP_CYTOPLASMIC_TRANSLATION, XU_GH1_AUTOCRINE_TARGETS_UP, GOBP_STRIATED_MUSCLE_CELL_DIFFERENTIATION, GOBP_MALE_GAMETE_GENERATION, GOBP_NEGATIVE_REGULATION_OF_CELLULAR_COMPONENT_ORGANIZATION, GOBP_TRANSLATION, GOBP_MUSCLE_STRUCTURE_DEVELOPMENT, GOBP_MUSCLE_CONTRACTION, GAZDA_DIAMOND_BLACKFAN_ANEMIA_PROGENITOR_DN, GOBP_REGULATION_OF_SYNCYTIUM_FORMATION_BY_PLASMA_MEMBRANE_FUSION, GOMF_STRUCTURAL_CONSTITUENT_OF_RIBOSOME, GNF2_FBL, SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_UP, GOBP_NEGATIVE_REGULATION_OF_DEVELOPMENTAL_PROCESS, GOBP_MYOTUBE_DIFFERENTIATION
GO Biological Process (2): cytoplasmic translation (GO:0002181), translation (GO:0006412)
GO Molecular Function (3): RNA binding (GO:0003723), structural constituent of ribosome (GO:0003735), protein binding (GO:0005515)
GO Cellular Component (9): nucleolus (GO:0005730), cytoplasm (GO:0005737), cytosol (GO:0005829), membrane (GO:0016020), cytosolic large ribosomal subunit (GO:0022625), cytosolic ribosome (GO:0022626), synapse (GO:0045202), ribosome (GO:0005840), ribonucleoprotein complex (GO:1990904)
Reactome top-level categories
Rollup of top-11 pathways:
| Category | Pathways |
|---|---|
| Ribosome-associated quality control | 3 |
| Translation | 2 |
| Cap-dependent Translation Initiation | 2 |
| Nonsense-Mediated Decay (NMD) | 2 |
| Eukaryotic Translation Initiation | 1 |
| Eukaryotic Translation Elongation | 1 |
| Influenza Viral RNA Transcription and Replication | 1 |
| Selenoamino acid metabolism | 1 |
| rRNA processing in the nucleus and cytosol | 1 |
| Signaling by ROBO receptors | 1 |
| Cellular response to starvation | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| ribosome | 2 |
| intracellular membraneless organelle | 2 |
| translation | 1 |
| peptidyltransferase activity | 1 |
| translational initiation | 1 |
| translational elongation | 1 |
| translational termination | 1 |
| macromolecule biosynthetic process | 1 |
| protein metabolic process | 1 |
| protein biosynthetic process | 1 |
| nucleic acid binding | 1 |
| structural molecule activity | 1 |
| binding | 1 |
| nuclear lumen | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| large ribosomal subunit | 1 |
| cytosolic ribosome | 1 |
| cytosol | 1 |
| cell junction | 1 |
| protein-containing complex | 1 |
Protein interactions and networks
STRING
0 interactions, top by confidence (×1000):
IntAct
0 interactions, top by confidence:
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
22 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 10 |
| Likely benign | 1 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
3141 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:5678646:TGC:T | acceptor_gain | 1.0000 |
| 19:5678649:C:CC | acceptor_gain | 1.0000 |
| 19:5679584:ACCTG:A | donor_loss | 1.0000 |
| 19:5679621:A:AC | donor_gain | 1.0000 |
| 19:5679622:C:CC | donor_gain | 1.0000 |
| 19:5679622:CTGG:C | donor_gain | 1.0000 |
| 19:5679651:C:CT | donor_gain | 1.0000 |
| 19:5679652:C:CT | donor_gain | 1.0000 |
| 19:5679759:GGAAC:G | acceptor_gain | 1.0000 |
| 19:5679760:GAAC:G | acceptor_gain | 1.0000 |
| 19:5679761:AAC:A | acceptor_gain | 1.0000 |
| 19:5679762:AC:A | acceptor_gain | 1.0000 |
| 19:5679763:CC:C | acceptor_gain | 1.0000 |
| 19:5679764:C:CC | acceptor_gain | 1.0000 |
| 19:5679764:CTG:C | acceptor_loss | 1.0000 |
| 19:5679771:C:CT | acceptor_gain | 1.0000 |
| 19:5680532:T:TA | donor_gain | 1.0000 |
| 19:5686523:GCTGG:G | donor_gain | 1.0000 |
| 19:5686524:C:G | donor_gain | 1.0000 |
| 19:5687500:CAG:C | acceptor_loss | 1.0000 |
| 19:5687501:A:AG | acceptor_gain | 1.0000 |
| 19:5687502:G:A | acceptor_loss | 1.0000 |
| 19:5687502:G:GG | acceptor_gain | 1.0000 |
| 19:5687502:GGCC:G | acceptor_gain | 1.0000 |
| 19:5687533:A:AG | acceptor_gain | 1.0000 |
| 19:5687533:ACTC:A | acceptor_gain | 1.0000 |
| 19:5687536:C:A | acceptor_gain | 1.0000 |
| 19:5687664:GTCAG:G | donor_gain | 1.0000 |
| 19:5687665:TCAGG:T | donor_loss | 1.0000 |
| 19:5687666:CAGGT:C | donor_loss | 1.0000 |
AlphaMissense
685 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 19:5691391:C:A | R56S | 1.000 |
| 19:5691395:C:A | A57D | 1.000 |
| 19:5691400:G:A | E59K | 1.000 |
| 19:5691404:T:C | L60S | 1.000 |
| 19:5691407:T:C | L61P | 1.000 |
| 19:5691421:G:C | D66H | 1.000 |
| 19:5691422:A:T | D66V | 1.000 |
| 19:5691424:A:G | K67E | 1.000 |
| 19:5691425:A:T | K67I | 1.000 |
| 19:5691426:A:C | K67N | 1.000 |
| 19:5691426:A:T | K67N | 1.000 |
| 19:5691431:C:A | A69D | 1.000 |
| 19:5691434:T:A | L70H | 1.000 |
| 19:5691434:T:C | L70P | 1.000 |
| 19:5691439:T:C | F72L | 1.000 |
| 19:5691440:T:C | F72S | 1.000 |
| 19:5691441:T:A | F72L | 1.000 |
| 19:5691441:T:G | F72L | 1.000 |
| 19:5691447:G:C | K74N | 1.000 |
| 19:5691447:G:T | K74N | 1.000 |
| 19:5691452:G:T | R76M | 1.000 |
| 19:5691535:G:A | G78R | 1.000 |
| 19:5691535:G:C | G78R | 1.000 |
| 19:5691535:G:T | G78W | 1.000 |
| 19:5691536:G:A | G78E | 1.000 |
| 19:5691536:G:T | G78V | 1.000 |
| 19:5691551:C:T | A83V | 1.000 |
| 19:5691561:G:C | K86N | 1.000 |
| 19:5691561:G:T | K86N | 1.000 |
| 19:5691572:T:C | L90P | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000418305 (19:5692305 T>A,C), RS1001159971 (19:5691638 C>T), RS1002071399 (19:5689016 T>C), RS1002103875 (19:5689343 C>A), RS1002413035 (19:5690868 C>G,T), RS1002730634 (19:5689746 C>T), RS1004405522 (19:5688586 G>A), RS1004806778 (19:5692333 A>C,G), RS1005893551 (19:5688413 C>T), RS1006273770 (19:5690915 G>A), RS1006568382 (19:5690742 G>A), RS1006641704 (19:5691001 G>A), RS1006759096 (19:5691123 G>A,C), RS1008299431 (19:5688913 T>C), RS1008767930 (19:5689200 T>C)
Disease associations
OMIM: gene MIM:617893 | disease phenotypes:
GenCC curated gene-disease
Mondo (1): myoepithelial tumor (MONDO:0002380)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D009208 | Myoepithelioma | C04.557.435.585 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
49 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | affects expression, affects cotreatment, increases methylation, decreases expression, increases expression | 5 |
| sodium arsenite | decreases expression, increases expression | 3 |
| Smoke | decreases expression, increases abundance | 2 |
| Tobacco Smoke Pollution | decreases expression, increases methylation | 2 |
| Valproic Acid | affects cotreatment, increases expression, increases methylation | 2 |
| Particulate Matter | decreases expression, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| quinone | decreases expression, decreases reaction, affects binding, increases reaction, decreases methylation (+1 more) | 1 |
| pyrogallol 1,3-dimethyl ether | affects cotreatment, affects localization, increases expression, decreases expression | 1 |
| tris(2-butoxyethyl) phosphate | increases expression | 1 |
| arsenite | affects binding, increases reaction | 1 |
| methylparaben | decreases expression | 1 |
| epigallocatechin gallate | increases expression | 1 |
| azoxystrobin | increases expression | 1 |
| chloropicrin | decreases expression | 1 |
| perfluoro-n-nonanoic acid | increases expression | 1 |
| deguelin | increases expression | 1 |
| fenpyroximate | increases expression | 1 |
| 4-chloro-N-((4-(1,1-dimethylethyl)phenyl)methyl)-3-ethyl-1-methyl-1H-pyrazole-5-carboxamide | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| pyrimidifen | increases expression | 1 |
| bisphenol B | increases expression | 1 |
| abrine | decreases expression | 1 |
| pyrachlostrobin | increases expression | 1 |
| jinfukang | increases expression | 1 |
| LDN 193189 | affects cotreatment, decreases expression | 1 |
| picoxystrobin | increases expression | 1 |
| 4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acid | decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
Clinical trials (associated diseases)
5 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT03600649 | PHASE1 | UNKNOWN | Clinical Trial of SP-2577 (Seclidemstat) in Patients With Relapsed or Refractory Ewing or Ewing-related Sarcomas |
| NCT05266196 | PHASE1/PHASE2 | UNKNOWN | A Rollover Protocol to Allow for Continued Access to the LSD1 Inhibitor Seclidemstat (SP-2577) |
| NCT06239272 | PHASE1/PHASE2 | RECRUITING | NRSTS2021, A Risk Adapted Study Evaluating Maintenance Pazopanib, Limited Margin, Dose-Escalated Radiation Therapy and Selinexor in Non-Rhabdomyosarcoma Soft Tissue Sarcoma (NRSTS) |
| NCT06625190 | PHASE1/PHASE2 | RECRUITING | Alpha/Beta T and B Cell Depletion With Zoledronic Acid for Solid Tumors |
| NCT06244420 | Not specified | COMPLETED | Malignant Myoepithelioma of Bone and Soft Tissues: Diagnostic Imaging and Histology in Relation to Prognosis |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): myoepithelial tumor