RPL9
gene geneOn this page
Also known as L9uL6
Summary
RPL9 (ribosomal protein L9, HGNC:10369) is a protein-coding gene on chromosome 4p14, encoding Large ribosomal subunit protein uL6 (P32969). Component of the large ribosomal subunit. It is a common-essential gene (DepMap: required in 100.0% of cancer cell lines).
Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 60S subunit. The protein belongs to the L6P family of ribosomal proteins. It is located in the cytoplasm. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 6133 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Diamond-Blackfan anemia (Moderate, GenCC)
- GWAS associations: 1
- Clinical variants (ClinVar): 111 total
- Phenotypes (HPO): 59
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- Cancer dependency (DepMap): dependent in 100.0% of screened cell lines (common-essential)
- MANE Select transcript:
NM_000661
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:10369 |
| Approved symbol | RPL9 |
| Name | ribosomal protein L9 |
| Location | 4p14 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | L9, uL6 |
| Ensembl gene | ENSG00000163682 |
| Ensembl biotype | protein_coding |
| OMIM | 603686 |
| Entrez | 6133 |
Gene structure
Transcript identifiers
Ensembl transcripts: 34 — 26 protein_coding, 8 retained_intron
ENST00000295955, ENST00000437992, ENST00000449470, ENST00000503040, ENST00000503277, ENST00000506581, ENST00000508595, ENST00000511075, ENST00000511643, ENST00000514842, ENST00000642337, ENST00000644328, ENST00000645496, ENST00000645585, ENST00000645894, ENST00000894374, ENST00000894375, ENST00000894376, ENST00000894377, ENST00000894378, ENST00000894379, ENST00000894380, ENST00000928672, ENST00000928673, ENST00000928674, ENST00000928675, ENST00000928676, ENST00000928677, ENST00000928678, ENST00000928679, ENST00000928680, ENST00000928681, ENST00000928682, ENST00000961349
RefSeq mRNA: 2 — MANE Select: NM_000661
NM_000661, NM_001024921
CCDS: CCDS3452
Canonical transcript exons
ENST00000295955 — 8 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001863624 | 39454124 | 39454225 |
| ENSE00002021328 | 39458891 | 39458922 |
| ENSE00003595055 | 39456406 | 39456538 |
| ENSE00003611780 | 39454533 | 39454649 |
| ENSE00003632782 | 39454864 | 39454944 |
| ENSE00003635900 | 39458194 | 39458309 |
| ENSE00003671095 | 39457586 | 39457681 |
| ENSE00003674466 | 39458394 | 39458440 |
Expression profiles
Bgee: expression breadth ubiquitous, 158 present calls, max score 99.86.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 60.3353 / max 731.2733, expressed in 1823 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 51845 | 53.7961 | 1819 |
| 51844 | 3.1741 | 1442 |
| 51843 | 1.8753 | 962 |
| 51842 | 1.4898 | 992 |
Top tissues by expression
158 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| cortical plate | UBERON:0005343 | 99.86 | gold quality |
| left ovary | UBERON:0002119 | 99.85 | gold quality |
| right ovary | UBERON:0002118 | 99.84 | gold quality |
| embryo | UBERON:0000922 | 99.83 | gold quality |
| ovary | UBERON:0000992 | 99.83 | gold quality |
| mucosa of stomach | UBERON:0001199 | 99.83 | gold quality |
| right uterine tube | UBERON:0001302 | 99.83 | gold quality |
| calcaneal tendon | UBERON:0003701 | 99.83 | gold quality |
| ganglionic eminence | UBERON:0004023 | 99.83 | gold quality |
| thoracic mammary gland | UBERON:0005200 | 99.83 | gold quality |
| gall bladder | UBERON:0002110 | 99.82 | gold quality |
| corpus callosum | UBERON:0002336 | 99.82 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 99.82 | gold quality |
| endometrium | UBERON:0001295 | 99.81 | gold quality |
| adenohypophysis | UBERON:0002196 | 99.81 | gold quality |
| body of uterus | UBERON:0009853 | 99.81 | gold quality |
| islet of Langerhans | UBERON:0000006 | 99.80 | gold quality |
| colonic epithelium | UBERON:0000397 | 99.80 | gold quality |
| uterus | UBERON:0000995 | 99.80 | gold quality |
| granulocyte | CL:0000094 | 99.79 | gold quality |
| body of pancreas | UBERON:0001150 | 99.79 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 99.79 | gold quality |
| uterine cervix | UBERON:0000002 | 99.78 | gold quality |
| pituitary gland | UBERON:0000007 | 99.78 | gold quality |
| endocervix | UBERON:0000458 | 99.78 | gold quality |
| pancreas | UBERON:0001264 | 99.78 | gold quality |
| myometrium | UBERON:0001296 | 99.78 | gold quality |
| right lung | UBERON:0002167 | 99.78 | gold quality |
| prostate gland | UBERON:0002367 | 99.78 | gold quality |
| omental fat pad | UBERON:0010414 | 99.78 | gold quality |
Single-cell (SCXA)
Detected in 43 experiment(s), a significant marker in 24.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-139324 | yes | 5311.94 |
| E-MTAB-6653 | yes | 4306.82 |
| E-HCAD-36 | yes | 3948.24 |
| E-MTAB-9467 | yes | 3040.47 |
| E-MTAB-8559 | yes | 2815.93 |
| E-MTAB-8894 | yes | 2581.18 |
| E-HCAD-5 | yes | 2378.74 |
| E-MTAB-8221 | yes | 2324.96 |
| E-MTAB-6701 | yes | 2310.81 |
| E-CURD-88 | yes | 2266.36 |
| E-CURD-7 | yes | 1003.89 |
| E-MTAB-8142 | yes | 119.15 |
| E-MTAB-8410 | yes | 40.93 |
| E-HCAD-1 | yes | 38.87 |
| E-MTAB-6678 | yes | 35.42 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): MYC
miRNA regulators (miRDB)
14 targeting RPL9, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-513B-5P | 99.99 | 69.96 | 2150 |
| HSA-MIR-25-3P | 99.98 | 74.60 | 1817 |
| HSA-MIR-363-3P | 99.98 | 74.72 | 1821 |
| HSA-MIR-367-3P | 99.98 | 74.83 | 1819 |
| HSA-MIR-32-5P | 99.98 | 75.21 | 1964 |
| HSA-MIR-92A-3P | 99.98 | 75.21 | 1960 |
| HSA-MIR-92B-3P | 99.98 | 75.25 | 1955 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-137-3P | 99.87 | 74.74 | 2401 |
| HSA-MIR-4457 | 98.09 | 67.12 | 1274 |
| HSA-MIR-493-3P | 97.50 | 66.44 | 731 |
| HSA-MIR-3137 | 97.26 | 66.78 | 761 |
| HSA-MIR-125B-2-3P | 96.69 | 68.38 | 1210 |
| HSA-MIR-6826-5P | 93.80 | 67.42 | 514 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 100.0% of screened cell lines, common-essential.
Literature-anchored findings (GeneRIF, showing 7)
- The authors propose that during rabies virus infection, viral phosphoprotein P binds to ribosomal protein L9 that translocates from the nucleus to the cytoplasm, inhibiting the initial stage of viral transcription. (PMID:26655239)
- High RPL9 expression is associated with colorectal carcinoma. (PMID:27633352)
- UNR could bind to the 3’UTR of PTEN and RPL9 in glioma cell lines, therefore promoting glioma cell migration and regulating the expression of RPL9. (PMID:30266104)
- Here we report an individual diagnosed with DBA carrying a variant in the 5’UTR of RPL9 (uL6). Additionally, we report two individuals from a family with multiple cancer incidences carrying a RPL9 missense variant (PMID:31799629)
- Investigating the folding mechanism of the N-terminal domain of ribosomal protein L9. (PMID:33576138)
- Genetic Variants of RPL5 and RPL9 Genes among Saudi Patients Diagnosed with Thrombosis. (PMID:34483448)
- RPL9 acts as an oncogene by shuttling miRNAs through exosomes in human hepatocellular carcinoma cells. (PMID:38639179)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | rpl9 | ENSDARG00000037350 |
| rattus_norvegicus | AABR07026048.1 | ENSRNOG00000031879 |
| drosophila_melanogaster | RpL9 | FBGN0015756 |
| caenorhabditis_elegans | WBGENE00004420 |
Protein
Protein identifiers
Large ribosomal subunit protein uL6 — P32969 (reviewed: P32969)
Alternative names: 60S ribosomal protein L9
All UniProt accessions (6): A0A2R8Y5Y7, D6RAN4, P32969, H0Y9R4, H0Y9V9, Q53Z07
UniProt curated annotations — full annotation on UniProt →
Function. Component of the large ribosomal subunit. The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell.
Subunit / interactions. Component of the large ribosomal subunit.
Subcellular location. Cytoplasm.
Similarity. Belongs to the universal ribosomal protein uL6 family.
RefSeq proteins (2): NP_000652, NP_001020092 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000702 | Ribosomal_uL6-like | Family |
| IPR002359 | Ribosomal_uL6_CS2 | Conserved_site |
| IPR020040 | Ribosomal_uL6_a/b-dom | Domain |
| IPR036789 | Ribosomal_uL6-like_a/b-dom_sf | Homologous_superfamily |
Pfam: PF00347
UniProt features (12 total): strand 8, chain 1, modified residue 1, helix 1, sequence conflict 1
Structure
Experimental structures (PDB)
193 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8A3D | ELECTRON MICROSCOPY | 1.67 |
| 8GLP | ELECTRON MICROSCOPY | 1.67 |
| 8QYX | ELECTRON MICROSCOPY | 1.78 |
| 8QOI | ELECTRON MICROSCOPY | 1.9 |
| 9O3W | ELECTRON MICROSCOPY | 1.9 |
| 8YOO | ELECTRON MICROSCOPY | 2 |
| 9C3H | ELECTRON MICROSCOPY | 2 |
| 9I2D | ELECTRON MICROSCOPY | 2.19 |
| 9PBE | ELECTRON MICROSCOPY | 2.19 |
| 8QFD | ELECTRON MICROSCOPY | 2.2 |
| 8YOP | ELECTRON MICROSCOPY | 2.2 |
| 9GUL | ELECTRON MICROSCOPY | 2.2 |
| 9O3V | ELECTRON MICROSCOPY | 2.2 |
| 9O3Y | ELECTRON MICROSCOPY | 2.2 |
| 8JDK | ELECTRON MICROSCOPY | 2.26 |
| 8G5Y | ELECTRON MICROSCOPY | 2.29 |
| 9S3D | ELECTRON MICROSCOPY | 2.32 |
| 9RPV | ELECTRON MICROSCOPY | 2.35 |
| 9S3B | ELECTRON MICROSCOPY | 2.38 |
| 7OW7 | ELECTRON MICROSCOPY | 2.4 |
| 8K2C | ELECTRON MICROSCOPY | 2.4 |
| 8XSX | ELECTRON MICROSCOPY | 2.4 |
| 9SPF | ELECTRON MICROSCOPY | 2.4 |
| 9SPI | ELECTRON MICROSCOPY | 2.4 |
| 8JDL | ELECTRON MICROSCOPY | 2.42 |
| 9S3C | ELECTRON MICROSCOPY | 2.42 |
| 8FKV | ELECTRON MICROSCOPY | 2.47 |
| 9QLO | ELECTRON MICROSCOPY | 2.47 |
| 8FLE | ELECTRON MICROSCOPY | 2.48 |
| 9P8B | ELECTRON MICROSCOPY | 2.48 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P32969-F1 | 94.11 | 0.93 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 121
Function
Pathways and Gene Ontology
Reactome pathways
16 pathways
| ID | Pathway |
|---|---|
| R-HSA-156827 | L13a-mediated translational silencing of Ceruloplasmin expression |
| R-HSA-156902 | Peptide chain elongation |
| R-HSA-1799339 | SRP-dependent cotranslational protein targeting to membrane |
| R-HSA-192823 | Viral mRNA Translation |
| R-HSA-2408557 | Selenocysteine synthesis |
| R-HSA-6791226 | Major pathway of rRNA processing in the nucleolus and cytosol |
| R-HSA-72689 | Formation of a pool of free 40S subunits |
| R-HSA-72706 | GTP hydrolysis and joining of the 60S ribosomal subunit |
| R-HSA-72764 | Eukaryotic Translation Termination |
| R-HSA-9010553 | Regulation of expression of SLITs and ROBOs |
| R-HSA-9633012 | Response of EIF2AK4 (GCN2) to amino acid deficiency |
| R-HSA-975956 | Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) |
| R-HSA-975957 | Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) |
| R-HSA-9954709 | Ribosome Quality Control (RQC) complex extracts and degrades nascent peptide |
| R-HSA-9954714 | PELO:HBS1L and ABCE1 dissociate a ribosome on a non-stop mRNA |
| R-HSA-9954716 | ZNF598 and the Ribosome-associated Quality Trigger (RQT) complex dissociate a ribosome stalled on a no-go mRNA |
MSigDB gene sets: 367 (showing top):
GOBP_CYTOPLASMIC_TRANSLATION, MODULE_151, GNF2_TPT1, GCM_NPM1, MORF_UBE2I, GOBP_STRIATED_MUSCLE_CELL_DIFFERENTIATION, GOBP_MALE_GAMETE_GENERATION, GOBP_NEGATIVE_REGULATION_OF_CELLULAR_COMPONENT_ORGANIZATION, GOBP_TRANSLATION, GOBP_MUSCLE_STRUCTURE_DEVELOPMENT, GOBP_MUSCLE_CONTRACTION, GOBP_REGULATION_OF_SYNCYTIUM_FORMATION_BY_PLASMA_MEMBRANE_FUSION, GOMF_STRUCTURAL_CONSTITUENT_OF_RIBOSOME, GNF2_FBL, GOBP_NEGATIVE_REGULATION_OF_DEVELOPMENTAL_PROCESS
GO Biological Process (2): cytoplasmic translation (GO:0002181), translation (GO:0006412)
GO Molecular Function (4): RNA binding (GO:0003723), structural constituent of ribosome (GO:0003735), rRNA binding (GO:0019843), protein binding (GO:0005515)
GO Cellular Component (9): nucleus (GO:0005634), cytoplasm (GO:0005737), cytosol (GO:0005829), ribosome (GO:0005840), focal adhesion (GO:0005925), membrane (GO:0016020), cytosolic large ribosomal subunit (GO:0022625), cytosolic ribosome (GO:0022626), ribonucleoprotein complex (GO:1990904)
Reactome top-level categories
Rollup of top-11 pathways:
| Category | Pathways |
|---|---|
| Ribosome-associated quality control | 3 |
| Translation | 2 |
| Cap-dependent Translation Initiation | 2 |
| Nonsense-Mediated Decay (NMD) | 2 |
| Eukaryotic Translation Initiation | 1 |
| Eukaryotic Translation Elongation | 1 |
| Influenza Viral RNA Transcription and Replication | 1 |
| Selenoamino acid metabolism | 1 |
| rRNA processing in the nucleus and cytosol | 1 |
| Signaling by ROBO receptors | 1 |
| Cellular response to starvation | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| ribosome | 2 |
| translation | 1 |
| peptidyltransferase activity | 1 |
| translational initiation | 1 |
| translational elongation | 1 |
| translational termination | 1 |
| macromolecule biosynthetic process | 1 |
| protein metabolic process | 1 |
| protein biosynthetic process | 1 |
| nucleic acid binding | 1 |
| structural molecule activity | 1 |
| RNA binding | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| intracellular membraneless organelle | 1 |
| cell-substrate junction | 1 |
| large ribosomal subunit | 1 |
| cytosolic ribosome | 1 |
| cytosol | 1 |
| protein-containing complex | 1 |
Protein interactions and networks
STRING
4813 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RPL9 | RPS25 | P25111 | 818 |
| RPL9 | RPL21 | P46778 | 803 |
| RPL9 | RPL4 | P36578 | 797 |
| RPL9 | RPS5 | P46782 | 787 |
| RPL9 | RPL14 | P50914 | 784 |
| RPL9 | RPL19 | P14118 | 771 |
| RPL9 | RPL7 | P18124 | 771 |
| RPL9 | RPS3 | P23396 | 770 |
| RPL9 | RPS20 | P17075 | 767 |
| RPL9 | ACADM | P11310 | 763 |
| RPL9 | RPL30 | P04645 | 763 |
| RPL9 | RPL5 | P46777 | 758 |
| RPL9 | RPL8 | P25120 | 754 |
| RPL9 | RPL11 | P25121 | 743 |
| RPL9 | RPS23 | P39028 | 740 |
IntAct
280 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MAP3K14 | CHUK | psi-mi:“MI:0914”(association) | 0.950 |
| RPL9 | DHPS | psi-mi:“MI:0915”(physical association) | 0.870 |
| DHPS | RPL9 | psi-mi:“MI:0915”(physical association) | 0.870 |
| RPL9 | DHPS | psi-mi:“MI:0914”(association) | 0.870 |
| CEP76 | RPL9 | psi-mi:“MI:0915”(physical association) | 0.830 |
| RPL9 | CEP76 | psi-mi:“MI:0915”(physical association) | 0.830 |
| RPL9 | VCP | psi-mi:“MI:0915”(physical association) | 0.780 |
| CCDC184 | RPL9 | psi-mi:“MI:0915”(physical association) | 0.720 |
| HMBOX1 | RPL9 | psi-mi:“MI:0915”(physical association) | 0.720 |
| RPL9 | ZBTB8A | psi-mi:“MI:0915”(physical association) | 0.720 |
| RPL9 | TIFA | psi-mi:“MI:0915”(physical association) | 0.720 |
| RPL9 | PNMA2 | psi-mi:“MI:0915”(physical association) | 0.720 |
| ZBTB8A | RPL9 | psi-mi:“MI:0915”(physical association) | 0.720 |
| TIFA | RPL9 | psi-mi:“MI:0915”(physical association) | 0.720 |
| PNMA2 | RPL9 | psi-mi:“MI:0915”(physical association) | 0.720 |
BioGRID (691): RPL9 (Affinity Capture-MS), RPL9 (Two-hybrid), RPL9 (Two-hybrid), VCP (Two-hybrid), ZBTB14 (Two-hybrid), CALCOCO2 (Two-hybrid), PNMA2 (Two-hybrid), MTUS2 (Two-hybrid), ZBTB7B (Two-hybrid), HOMEZ (Two-hybrid), KXD1 (Two-hybrid), HMBOX1 (Two-hybrid), CEP76 (Two-hybrid), TIFA (Two-hybrid), FAM9B (Two-hybrid)
ESM2 similar proteins: A5IHP9, A6KYI0, A7ZFZ7, A8EZK1, A8F4S6, B0B888, B0BCF3, B2RLX7, B3EUK8, B8HMR8, G1SWI6, O74905, P05738, P0CE01, P17077, P30707, P32969, P49209, P49210, P50882, P51401, P51410, Q09865, Q10232, Q11QC7, Q1CRV6, Q1D760, Q1MPQ0, Q22AX5, Q3KLI3, Q3SYR7, Q54XI5, Q5AEN2, Q5IFJ7, Q5L8C4, Q5R9Q7, Q5WZJ7, Q5X844, Q64NM3, Q7MTM8
Diamond homologs: A0B9V4, A2BMD5, A3DNC3, A4FWA5, A4XLR5, A5IM98, A5UL72, A5WCK5, A6UQ60, A6UWV4, A6VH01, A7Z0Q3, A8AC04, A9A9P8, B0K5Q8, B1LBM5, B2A4F4, B5ELZ4, B6YSN0, B7J482, B8D0D9, B8D5V4, B8DB23, B8GV43, B9K8A1, B9MKG6, C5A269, C5CC48, G1SWI6, O02376, O05637, O26127, O28370, O59433, O74905, P05738, P14030, P14135, P17077, P30707
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| RPL9 | “form complex” | “60S cytosolic large ribosomal subunit” | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 116 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| SARS-CoV-2 modulates host translation machinery | 5 | 15.6× | 4e-04 |
| Formation of a pool of free 40S subunits | 8 | 12.4× | 5e-05 |
| Peptide chain elongation | 7 | 12.3× | 1e-04 |
| Viral mRNA Translation | 7 | 12.3× | 1e-04 |
| PELO:HBS1L and ABCE1 dissociate a ribosome on a non-stop mRNA | 7 | 12.2× | 1e-04 |
| Selenocysteine synthesis | 7 | 11.7× | 1e-04 |
| Eukaryotic Translation Termination | 7 | 11.7× | 1e-04 |
| Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) | 7 | 11.4× | 1e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| mRNA stabilization | 5 | 18.7× | 2e-03 |
| cytoplasmic translation | 9 | 17.0× | 2e-06 |
| translation | 10 | 10.5× | 1e-05 |
| rRNA processing | 6 | 8.7× | 6e-03 |
| RNA splicing | 7 | 6.3× | 9e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
111 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 48 |
| Likely benign | 46 |
| Benign | 11 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
688 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 4:39454221:GGTAA:G | acceptor_gain | 1.0000 |
| 4:39454222:GTAA:G | acceptor_gain | 1.0000 |
| 4:39454223:TAA:T | acceptor_gain | 1.0000 |
| 4:39454224:AA:A | acceptor_gain | 1.0000 |
| 4:39454224:AACT:A | acceptor_loss | 1.0000 |
| 4:39454225:AC:A | acceptor_loss | 1.0000 |
| 4:39454226:C:CC | acceptor_gain | 1.0000 |
| 4:39454226:CT:C | acceptor_loss | 1.0000 |
| 4:39454528:CTTA:C | donor_loss | 1.0000 |
| 4:39454529:TTAC:T | donor_loss | 1.0000 |
| 4:39454530:TACC:T | donor_loss | 1.0000 |
| 4:39454531:A:AC | donor_gain | 1.0000 |
| 4:39454531:AC:A | donor_gain | 1.0000 |
| 4:39454531:ACCT:A | donor_gain | 1.0000 |
| 4:39454532:C:CA | donor_gain | 1.0000 |
| 4:39454532:CC:C | donor_gain | 1.0000 |
| 4:39454532:CCT:C | donor_gain | 1.0000 |
| 4:39454532:CCTC:C | donor_gain | 1.0000 |
| 4:39454532:CCTCT:C | donor_gain | 1.0000 |
| 4:39454645:AGCCG:A | acceptor_gain | 1.0000 |
| 4:39454646:GCCG:G | acceptor_gain | 1.0000 |
| 4:39454647:CCG:C | acceptor_gain | 1.0000 |
| 4:39454647:CCGC:C | acceptor_gain | 1.0000 |
| 4:39454647:CCGCT:C | acceptor_gain | 1.0000 |
| 4:39454648:CG:C | acceptor_gain | 1.0000 |
| 4:39454648:CGCTA:C | acceptor_gain | 1.0000 |
| 4:39454650:C:CA | acceptor_loss | 1.0000 |
| 4:39454650:C:CC | acceptor_gain | 1.0000 |
| 4:39454652:A:AC | acceptor_gain | 1.0000 |
| 4:39454652:A:C | acceptor_gain | 1.0000 |
AlphaMissense
1259 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 4:39454589:C:T | G178D | 1.000 |
| 4:39454590:C:G | G178R | 1.000 |
| 4:39454591:A:C | D177E | 1.000 |
| 4:39454591:A:T | D177E | 1.000 |
| 4:39454592:T:A | D177V | 1.000 |
| 4:39454593:C:G | D177H | 1.000 |
| 4:39454597:A:C | F175L | 1.000 |
| 4:39454597:A:T | F175L | 1.000 |
| 4:39454598:A:C | F175C | 1.000 |
| 4:39454598:A:G | F175S | 1.000 |
| 4:39454599:A:G | F175L | 1.000 |
| 4:39454603:C:A | R173S | 1.000 |
| 4:39454603:C:G | R173S | 1.000 |
| 4:39454604:C:A | R173M | 1.000 |
| 4:39454604:C:G | R173T | 1.000 |
| 4:39454610:T:A | D171V | 1.000 |
| 4:39454611:C:G | D171H | 1.000 |
| 4:39454612:C:A | K170N | 1.000 |
| 4:39454612:C:G | K170N | 1.000 |
| 4:39456441:C:A | G119V | 1.000 |
| 4:39456441:C:T | G119D | 1.000 |
| 4:39456446:G:C | F117L | 1.000 |
| 4:39456446:G:T | F117L | 1.000 |
| 4:39456448:A:G | F117L | 1.000 |
| 4:39456500:G:C | F99L | 1.000 |
| 4:39456500:G:T | F99L | 1.000 |
| 4:39456501:A:C | F99C | 1.000 |
| 4:39456501:A:G | F99S | 1.000 |
| 4:39456502:A:C | F99V | 1.000 |
| 4:39456502:A:G | F99L | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000123042 (4:39460427 A>G,T), RS1000173649 (4:39460587 A>G), RS1000334101 (4:39455710 C>T), RS1000669423 (4:39456838 A>G), RS1001021701 (4:39456707 T>A,C), RS1001058677 (4:39457117 T>A,C), RS1001112046 (4:39457330 A>AAG), RS1001670616 (4:39454853 A>C), RS1001966949 (4:39459625 G>C), RS1002114507 (4:39456009 G>A), RS10025155 (4:39455015 T>C), RS1002902444 (4:39459209 A>C,G), RS1004772202 (4:39459458 A>G), RS1004864084 (4:39459779 G>A), RS1005864202 (4:39458893 C>A,G,T)
Disease associations
OMIM: gene MIM:603686 | disease phenotypes: MIM:105650
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Diamond-Blackfan anemia | Moderate | Autosomal dominant |
Mondo (1): Diamond-Blackfan anemia (MONDO:0015253)
Orphanet (1): Diamond-Blackfan anemia (Orphanet:124)
HPO phenotypes
59 total (30 of 59 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000047 | Hypospadias |
| HP:0000085 | Horseshoe kidney |
| HP:0000104 | Renal agenesis |
| HP:0000119 | Abnormality of the genitourinary system |
| HP:0000185 | Cleft soft palate |
| HP:0000218 | High palate |
| HP:0000234 | Abnormality of the head |
| HP:0000252 | Microcephaly |
| HP:0000286 | Epicanthus |
| HP:0000294 | Low anterior hairline |
| HP:0000316 | Hypertelorism |
| HP:0000347 | Micrognathia |
| HP:0000369 | Low-set ears |
| HP:0000431 | Wide nasal bridge |
| HP:0000465 | Webbed neck |
| HP:0000470 | Short neck |
| HP:0000486 | Strabismus |
| HP:0000508 | Ptosis |
| HP:0000519 | Developmental cataract |
| HP:0000912 | Sprengel anomaly |
| HP:0000980 | Pallor |
| HP:0001087 | Developmental glaucoma |
| HP:0001199 | Triphalangeal thumb |
| HP:0001227 | Abnormality of the thenar eminence |
| HP:0001254 | Lethargy |
| HP:0001510 | Growth delay |
| HP:0001518 | Small for gestational age |
| HP:0001627 | Abnormal heart morphology |
| HP:0001629 | Ventricular septal defect |
| HP:0001631 | Atrial septal defect |
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST007328_35 | Alcohol consumption (drinks per week) | 2.000000e-10 |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D029503 | Anemia, Diamond-Blackfan | C15.378.050.085.080.090; C15.378.050.750.500; C15.378.190.223.500.500.090; C16.320.077.090 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL3987582 (PROTEIN NUCLEIC-ACID COMPLEX), CHEMBL6066916 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL6067484 | GENTAMICIN SULFATE | 4 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
50 potent at pChembl≥5 of 54 total, top 49 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.52 | IC50 | 300 | nM | CHEMBL4109308 |
| 6.42 | IC50 | 380 | nM | CHEMBL4109308 |
| 6.42 | IC50 | 380 | nM | CHEMBL4574496 |
| 6.41 | IC50 | 390 | nM | CHEMBL4126894 |
| 6.39 | IC50 | 410 | nM | CHEMBL4114159 |
| 6.35 | IC50 | 450 | nM | CHEMBL4126496 |
| 6.30 | IC50 | 500 | nM | CHEMBL4574496 |
| 6.30 | IC50 | 500 | nM | CHEMBL4560206 |
| 6.16 | IC50 | 690 | nM | CHEMBL4130157 |
| 6.15 | IC50 | 710 | nM | CHEMBL4108338 |
| 6.11 | IC50 | 780 | nM | CHEMBL4114159 |
| 6.09 | IC50 | 820 | nM | CHEMBL4109308 |
| 6.07 | IC50 | 850 | nM | CHEMBL4107559 |
| 6.07 | IC50 | 850 | nM | CHEMBL4533299 |
| 6.05 | IC50 | 900 | nM | CHEMBL4126894 |
| 6.05 | IC50 | 900 | nM | CHEMBL4126496 |
| 6.04 | IC50 | 920 | nM | CHEMBL4554909 |
| 5.97 | IC50 | 1060 | nM | CHEMBL4128388 |
| 5.89 | IC50 | 1290 | nM | CHEMBL4130157 |
| 5.89 | Kd | 1273 | nM | CHEMBL3752910 |
| 5.89 | ED50 | 1273 | nM | CHEMBL3752910 |
| 5.86 | IC50 | 1370 | nM | CHEMBL4107559 |
| 5.84 | IC50 | 1440 | nM | CHEMBL4108338 |
| 5.81 | IC50 | 1540 | nM | CHEMBL4534859 |
| 5.76 | IC50 | 1730 | nM | CHEMBL4534859 |
| 5.69 | IC50 | 2050 | nM | CHEMBL4566239 |
| 5.68 | IC50 | 2080 | nM | CHEMBL4446635 |
| 5.66 | IC50 | 2210 | nM | CHEMBL4446635 |
| 5.66 | EC50 | 2200 | nM | CHEMBL4464929 |
| 5.64 | IC50 | 2270 | nM | CHEMBL4533299 |
| 5.63 | IC50 | 2330 | nM | CHEMBL4566239 |
| 5.62 | IC50 | 2380 | nM | CHEMBL4128388 |
| 5.58 | IC50 | 2630 | nM | CHEMBL4128250 |
| 5.55 | IC50 | 2820 | nM | CHEMBL4127458 |
| 5.53 | IC50 | 2970 | nM | CHEMBL4127311 |
| 5.51 | IC50 | 3080 | nM | CHEMBL4126072 |
| 5.46 | IC50 | 3500 | nM | CHEMBL4525277 |
| 5.44 | IC50 | 3630 | nM | CHEMBL4469712 |
| 5.39 | IC50 | 4100 | nM | CHEMBL4128560 |
| 5.37 | IC50 | 4300 | nM | CHEMBL4127016 |
| 5.36 | IC50 | 4380 | nM | CHEMBL4527910 |
| 5.28 | Kd | 5231 | nM | CHEMBL5653589 |
| 5.28 | ED50 | 5231 | nM | CHEMBL5653589 |
| 5.16 | IC50 | 7000 | nM | CHEMBL4109308 |
| 5.13 | IC50 | 7400 | nM | CHLORAMPHENICOL SULFATE SALT |
| 5.09 | IC50 | 8040 | nM | CHEMBL4128250 |
| 5.08 | IC50 | 8370 | nM | CHEMBL4128250 |
| 5.03 | IC50 | 9320 | nM | CHEMBL4127016 |
| 5.03 | IC50 | 9240 | nM | CHEMBL4128560 |
PubChem BioAssay actives
48 with measured affinity, of 209 total; 28 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| N-(3-chloro-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-4-(triazolo[4,5-b]pyridin-3-yl)benzamide | 1585498: Binding affinity to 80S ribosome in human HuH7 cells expressing human C-terminal V5/6-His-tagged PCSK9 assessed as inhibition of PCSK9 secretion after 16 to 24 hrs by AlphaLISA method | ic50 | 0.3000 | uM |
| N-(3-chloro-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-3-[4-(triazolo[4,5-b]pyridin-3-yl)phenyl]propanamide | 1532845: Binding affinity to 80S ribosome in human HuH7 cells harboring human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.3800 | uM |
| N-isoquinolin-1-yl-N-[(3R)-piperidin-3-yl]-4-(triazolo[4,5-b]pyridin-3-yl)benzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.3900 | uM |
| N-(3-chloro-2-pyridinyl)-4-(6-methyltriazolo[4,5-b]pyridin-3-yl)-N-[(3R)-piperidin-3-yl]benzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.4100 | uM |
| N-(3-chloro-2-pyridinyl)-4-(5-methyltriazolo[4,5-b]pyridin-3-yl)-N-[(3R)-piperidin-3-yl]benzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.4500 | uM |
| N-(1-methylpyrrolo[2,3-c]pyridin-7-yl)-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 0.5000 | uM |
| N-isoquinolin-1-yl-N-[(3R)-piperidin-3-yl]-4-pyrazolo[1,5-a]pyrimidin-3-ylbenzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.6900 | uM |
| N-(3-chloro-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-5-(triazolo[4,5-b]pyridin-3-yl)pyridine-2-carboxamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.7100 | uM |
| N-(3-chloro-2-pyridinyl)-3-[5-(6-methyltriazolo[4,5-b]pyridin-3-yl)-2-pyridinyl]-N-[(3R)-piperidin-3-yl]propanamide | 1532845: Binding affinity to 80S ribosome in human HuH7 cells harboring human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.8500 | uM |
| N-(3-chloro-2-pyridinyl)-5-(6-methyltriazolo[4,5-b]pyridin-3-yl)-N-[(3R)-piperidin-3-yl]pyridine-2-carboxamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.8500 | uM |
| N-(3-methyl-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-4-pyrazolo[1,5-a]pyrimidin-3-ylpiperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 0.9200 | uM |
| N-isoquinolin-1-yl-4-(1-methylpyrazol-4-yl)-N-[(3R)-piperidin-3-yl]benzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 1.0600 | uM |
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149276: Binding affinity to human RPL9 incubated for 45 mins by Kinobead based pull down assay | kd | 1.2731 | uM |
| N-isoquinolin-1-yl-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 1.5400 | uM |
| N-(3-methyl-2-pyridinyl)-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532845: Binding affinity to 80S ribosome in human HuH7 cells harboring human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 2.0500 | uM |
| N-(3-chloro-2-pyridinyl)-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 2.0800 | uM |
| N-(5,8-dihydroisoquinolin-1-yl)-3-(4-methoxyphenyl)-N-[(3R)-piperidin-3-yl]propanamide | 1584424: Inhibition of human 80S ribosome-mediated PCSK9 translation expressed in CHO-K1 cells assessed as reduction in PCSK9 secretion | ec50 | 2.2000 | uM |
| N-isoquinolin-1-yl-3-(4-methoxyphenyl)-N-[(3R)-piperidin-3-yl]propanamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 2.6300 | uM |
| N-(3-chloro-2-pyridinyl)-4-(6-methylpyrazin-2-yl)-N-[(3R)-piperidin-3-yl]benzamide | 1497963: Binding affinity to 80S ribosome in human HuH7 cells assessed as inhibition of PCSK9 mRNA translation after overnight incubation by ELISA | ic50 | 2.8200 | uM |
| N-(3-chloro-2-pyridinyl)-4-[6-(dimethylamino)pyrazin-2-yl]-N-[(3R)-piperidin-3-yl]benzamide | 1497963: Binding affinity to 80S ribosome in human HuH7 cells assessed as inhibition of PCSK9 mRNA translation after overnight incubation by ELISA | ic50 | 2.9700 | uM |
| N-(3-chloro-2-pyridinyl)-4-[6-(methylamino)pyrazin-2-yl]-N-[(3R)-piperidin-3-yl]benzamide | 1497963: Binding affinity to 80S ribosome in human HuH7 cells assessed as inhibition of PCSK9 mRNA translation after overnight incubation by ELISA | ic50 | 3.0800 | uM |
| N-isoquinolin-1-yl-4-(6-methyl-1,2-benzoxazol-3-yl)-N-[(3R)-piperidin-3-yl]piperazine-1-carboxamide | 1532845: Binding affinity to 80S ribosome in human HuH7 cells harboring human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 3.5000 | uM |
| N-(3-methylpyrazin-2-yl)-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 3.6300 | uM |
| N-(3-chloro-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-6-(triazolo[4,5-b]pyridin-3-yl)pyridine-3-carboxamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 4.1000 | uM |
| N-isoquinolin-1-yl-N-[(3R)-piperidin-3-yl]-4-pyrazin-2-ylbenzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 4.3000 | uM |
| 4-(2-fluorophenyl)-N-(3-methyl-2-pyridinyl)-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 4.3800 | uM |
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149276: Binding affinity to human RPL9 incubated for 45 mins by Kinobead based pull down assay | kd | 5.2306 | uM |
| 2,2-dichloro-N-[(1R,2R)-1,3-dihydroxy-1-(4-nitrophenyl)propan-2-yl]acetamide;sulfuric acid | 717551: Inhibition of mitochondrial ribosome-mediated protein synthesis in human HeLa cells assessed as {35S]methionine incorporation by autoradiography | ic50 | 7.4000 | uM |
CTD chemical–gene interactions
51 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | affects expression, decreases expression | 3 |
| sodium arsenite | increases abundance, increases expression, decreases expression | 3 |
| Air Pollutants | increases abundance, increases expression, decreases expression, affects cotreatment | 3 |
| Smoke | decreases expression, increases abundance | 2 |
| Particulate Matter | increases abundance, increases expression, decreases expression | 2 |
| dicrotophos | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | affects cotreatment, increases expression, increases abundance | 1 |
| titanium dioxide | increases expression | 1 |
| pyrogallol 1,3-dimethyl ether | affects cotreatment, affects localization, increases expression | 1 |
| beta-lapachone | increases expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| methylparaben | increases expression | 1 |
| ochratoxin A | increases expression | 1 |
| methacrylaldehyde | affects cotreatment, increases expression, increases abundance | 1 |
| beta-methylcholine | affects expression | 1 |
| azoxystrobin | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| chloropicrin | affects expression | 1 |
| deguelin | increases expression | 1 |
| fenpyroximate | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| pyrimidifen | increases expression | 1 |
| abrine | decreases expression | 1 |
| pyrachlostrobin | increases expression | 1 |
| LDN 193189 | affects cotreatment, decreases expression | 1 |
| picoxystrobin | increases expression | 1 |
| nabiximols | increases expression | 1 |
| Sunitinib | increases expression | 1 |
| Arsenic Trioxide | decreases expression | 1 |
ChEMBL screening assays
90 unique, capped per target: 90 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1920845 | Binding | Induction of ribosome to readthrough in human A-T lymphoblastoid cells assessed as ATM ser1981 autophosphorylation at 30 uM after 4 days by PTT-ELISA assay | Synthesis and evaluation of compounds that induce readthrough of premature termination codons. — Bioorg Med Chem Lett |
Clinical trials (associated diseases)
38 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00673608 | PHASE4 | COMPLETED | Magnetic Resonance Imaging (MRI) Assessments of the Heart and Liver Iron Load in Patients With Transfusion Induced Iron Overload |
| NCT00235391 | PHASE3 | COMPLETED | Expanded Access of Deferasirox to Patients With Congenital Disorders of Red Blood Cells and Chronic Iron Overload |
| NCT00001962 | PHASE2 | TERMINATED | A Study to Determine Whether Therapy With Daclizumab Will Benefit Patients With Bone Marrow Failure |
| NCT00011505 | PHASE2 | COMPLETED | Mobilization of Stem Cells With G-CSF for Collection From Patients With Diamond-Blackfan Anemia |
| NCT00301834 | PHASE2 | COMPLETED | Alemtuzumab, Fludarabine, and Busulfan Followed By Donor Stem Cell Transplant in Treating Young Patients With Hematologic Disorders |
| NCT00957931 | PHASE2 | COMPLETED | Allo-HCT MUD for Non-malignant Red Blood Cell (RBC) Disorders: Sickle Cell, Thal, and DBA: Reduced Intensity Conditioning, Co-tx MSCs |
| NCT01529827 | PHASE2 | COMPLETED | Fludarabine Phosphate, Melphalan, and Low-Dose Total-Body Irradiation Followed by Donor Peripheral Blood Stem Cell Transplant in Treating Patients With Hematologic Malignancies |
| NCT02386267 | PHASE2 | UNKNOWN | L-leucine in Diamond Blackfan Anemia Patients |
| NCT02512679 | PHASE2 | TERMINATED | Related Hematopoietic Stem Cell Transplantation (HSCT) for Genetic Diseases of Blood Cells |
| NCT03333486 | PHASE2 | TERMINATED | Fludarabine Phosphate, Cyclophosphamide, Total Body Irradiation, and Donor Stem Cell Transplant in Treating Patients With Blood Cancer |
| NCT04099966 | PHASE2 | RECRUITING | AlloSCT for Malignant and Non-malignant Hematologic Diseases Utilizing Alpha/Beta T Cell and CD19+ B Cell Depletion |
| NCT04965597 | PHASE2 | COMPLETED | Treosulfan-Based Conditioning Regimen Before a Blood or Bone Marrow Transplant for the Treatment of Bone Marrow Failure Diseases (BMT CTN 1904) |
| NCT01586455 | PHASE1 | COMPLETED | Human Placental-Derived Stem Cell Transplantation |
| NCT01917708 | PHASE1 | COMPLETED | Bone Marrow Transplant With Abatacept for Non-Malignant Diseases |
| NCT00176852 | PHASE2/PHASE3 | COMPLETED | Stem Cell Transplant for Hemoglobinopathy |
| NCT00176878 | PHASE2/PHASE3 | COMPLETED | Stem Cell Transplant for Bone Marrow Failure Syndromes |
| NCT00305708 | PHASE1/PHASE2 | COMPLETED | Busulfan, Antithymocyte Globulin, and Fludarabine Followed By a Donor Stem Cell Transplant in Treating Young Patients With Blood Disorders, Bone Marrow Disorders, Chronic Myelogenous Leukemia in First Chronic Phase, or Acute Myeloid Leukemia in First Remission |
| NCT01362595 | PHASE1/PHASE2 | COMPLETED | Pilot Phase I/II Study of Amino Acid Leucine in Treatment of Patients With Transfusion-Dependent Diamond Blackfan Anemia |
| NCT01419704 | PHASE1/PHASE2 | WITHDRAWN | Phase I/II Pilot Study of Mixed Chimerism to Treat Hemoglobinopathies |
| NCT01464164 | PHASE1/PHASE2 | TERMINATED | Safety and Efficacy Study of Sotatercept in Adults With Transfusion Dependent Diamond Blackfan Anemia |
| NCT01966367 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | CD34+ (Non-Malignant) Stem Cell Selection for Patients Receiving Allogeneic Stem Cell Transplantation |
| NCT02065869 | PHASE1/PHASE2 | TERMINATED | Safety Study of Gene Modified Donor T-cells Following TCRαβ+ Depleted Stem Cell Transplant |
| NCT03513328 | PHASE1/PHASE2 | COMPLETED | Conditioning Regimen for Allogeneic Hematopoietic Stem-Cell Transplantation |
| NCT03653338 | PHASE1/PHASE2 | RECRUITING | T-Cell Depleted Alternative Donor Bone Marrow Transplant for Sickle Cell Disease (SCD) and Other Anemias |
| NCT03733249 | PHASE1/PHASE2 | TERMINATED | Long Term Follow-up Study for Patients Enrolled on the BP-004 Clinical Study |
| NCT03966053 | PHASE1/PHASE2 | TERMINATED | The Use of Trifluoperazine in Transfusion Dependent DBA |
| NCT00027274 | Not specified | RECRUITING | Cancer in Inherited Bone Marrow Failure Syndromes |
| NCT00244010 | Not specified | COMPLETED | Partially Matched Stem Cell Transplantation for Patients With Refractory Severe Aplastic Anemia or Refractory Cytopenias |
| NCT00290628 | Not specified | TERMINATED | Donor Umbilical Cord Blood Transplant in Treating Patients With Hematologic Cancer |
| NCT01114776 | Not specified | COMPLETED | Multi-Center Study of Iron Overload: Pilot Study |
| NCT01319851 | Not specified | TERMINATED | Alefacept and Allogeneic Hematopoietic Stem Cell Transplantation |
| NCT01758042 | Not specified | COMPLETED | Bone Marrow and Kidney Transplant for Patients With Chronic Kidney Disease and Blood Disorders |
| NCT01913548 | Not specified | COMPLETED | Multi-Center Study of Iron Overload: Survey Study (MCSIO) |
| NCT02179359 | Not specified | TERMINATED | Hematopoietic Stem Cell Transplant for High Risk Hemoglobinopathies |
| NCT02720679 | Not specified | RECRUITING | Investigation of the Genetics of Hematologic Diseases |
| NCT03050268 | Not specified | RECRUITING | Familial Investigations of Childhood Cancer Predisposition |
| NCT05687474 | Not specified | COMPLETED | Baby Detect : Genomic Newborn Screening |
| NCT07186179 | Not specified | RECRUITING | Mobilization of CD34+ Peripheral Blood Stem Cells in Patients With Diamond Blackfan Anemia Syndrome (DBAS) |
Related Atlas pages
- Associated diseases: Diamond-Blackfan anemia
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Diamond-Blackfan anemia