RPS26
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Also known as S26eS26
Summary
RPS26 (ribosomal protein S26, HGNC:10414) is a protein-coding gene on chromosome 12q13.2, encoding Small ribosomal subunit protein eS26 (P62854). Component of the small ribosomal subunit. It is haploinsufficient (ClinGen: sufficient evidence).
This gene encodes a ribosomal protein that is a component of the 40S subunit. The protein belongs to the S26E family of ribosomal proteins. Mutations in this gene are found in Diamond-Blackfan anemia 10. There are multiple processed pseudogenes of this gene dispersed through the genome.
Source: NCBI Gene 6231 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Diamond-Blackfan anemia 10 (Definitive, GenCC) — +1 more curated relationship
- GWAS associations: 22
- Clinical variants (ClinVar): 188 total — 22 pathogenic, 8 likely-pathogenic
- Phenotypes (HPO): 82
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- Dosage sensitivity (ClinGen): haploinsufficiency sufficient evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_001029
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:10414 |
| Approved symbol | RPS26 |
| Name | ribosomal protein S26 |
| Location | 12q13.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | S26, eS26 |
| Ensembl gene | ENSG00000197728 |
| Ensembl biotype | protein_coding |
| OMIM | 603701 |
| Entrez | 6231 |
Gene structure
Transcript identifiers
Ensembl transcripts: 5 — 4 protein_coding, 1 retained_intron
ENST00000356464, ENST00000548590, ENST00000552361, ENST00000646449, ENST00000925486
RefSeq mRNA: 1 — MANE Select: NM_001029
NM_001029
CCDS: CCDS31832
Canonical transcript exons
ENST00000646449 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001283785 | 56043363 | 56043493 |
| ENSE00001424213 | 56042425 | 56042602 |
| ENSE00003826907 | 56041918 | 56042169 |
| ENSE00003832070 | 56044119 | 56044697 |
Expression profiles
Bgee: expression breadth ubiquitous, 140 present calls, max score 99.77.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 29.5372 / max 952.8712, expressed in 1806 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 126047 | 18.5642 | 1768 |
| 126049 | 9.9312 | 1772 |
| 126048 | 0.5490 | 317 |
| 126046 | 0.3764 | 181 |
| 126045 | 0.1164 | 58 |
Top tissues by expression
153 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| granulocyte | CL:0000094 | 99.77 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 99.65 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 99.63 | gold quality |
| mucosa of stomach | UBERON:0001199 | 99.62 | gold quality |
| right ovary | UBERON:0002118 | 99.61 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 99.61 | gold quality |
| left adrenal gland | UBERON:0001234 | 99.59 | gold quality |
| right uterine tube | UBERON:0001302 | 99.58 | gold quality |
| right adrenal gland | UBERON:0001233 | 99.57 | gold quality |
| adenohypophysis | UBERON:0002196 | 99.54 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 99.53 | gold quality |
| left uterine tube | UBERON:0001303 | 99.49 | gold quality |
| body of pancreas | UBERON:0001150 | 99.47 | gold quality |
| adrenal gland | UBERON:0002369 | 99.43 | gold quality |
| transverse colon | UBERON:0001157 | 99.40 | gold quality |
| right lung | UBERON:0002167 | 99.40 | gold quality |
| rectum | UBERON:0001052 | 99.37 | gold quality |
| lymph node | UBERON:0000029 | 99.36 | gold quality |
| skin of abdomen | UBERON:0001416 | 99.36 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 99.36 | gold quality |
| body of stomach | UBERON:0001161 | 99.35 | gold quality |
| esophagus mucosa | UBERON:0002469 | 99.35 | gold quality |
| right coronary artery | UBERON:0001625 | 99.34 | gold quality |
| body of uterus | UBERON:0009853 | 99.34 | gold quality |
| zone of skin | UBERON:0000014 | 99.29 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 99.29 | gold quality |
| pituitary gland | UBERON:0000007 | 99.28 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 99.28 | gold quality |
| esophagus | UBERON:0001043 | 99.27 | gold quality |
| skin of leg | UBERON:0001511 | 99.27 | gold quality |
Single-cell (SCXA)
Detected in 44 experiment(s), a significant marker in 18.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-11011 | yes | 7342.41 |
| E-MTAB-8142 | yes | 5854.61 |
| E-MTAB-9221 | yes | 5668.88 |
| E-HCAD-36 | yes | 5037.63 |
| E-MTAB-6653 | yes | 4761.92 |
| E-GEOD-149689 | yes | 4618.83 |
| E-HCAD-8 | yes | 4365.85 |
| E-MTAB-10553 | yes | 3855.98 |
| E-CURD-88 | yes | 2042.05 |
| E-MTAB-6701 | yes | 119.00 |
| E-HCAD-5 | yes | 48.87 |
| E-MTAB-9067 | yes | 25.39 |
| E-GEOD-135922 | yes | 25.31 |
| E-ANND-3 | yes | 19.23 |
| E-CURD-112 | yes | 16.73 |
Regulation
Is transcription factor: no
Functional genomics
ClinGen dosage: haploinsufficiency 3 (sufficient evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 15)
- Ribosomal protein binding with the first intron of the human rpS26 pre-mRNA stimulates its interaction with proteins extracted from Hela cells (PMID:12068637)
- Human recombinant ribosomal protein S26 (rpS26) was shown to interact with its pre-mRNA intron I and mRNA fragment. (PMID:15716004)
- Mutations in the RPS10 and RPS26 genes in DBA patients affect the function of the proteins in rRNA processing. (PMID:20116044)
- the Czech Diamond-Blackfan Anemia(DBA) Registry comprises patients with mutations in five different RPs: RPS 19,5,26,11,17, together amounting to 67.3% of resolved cases, and making RPS26 the third most mutated gene in Czech DBA patients. (PMID:21414820)
- Studies identified deletions at known Diamond-Blackfan anemia (DBA)-related ribosomal protein gene loci in 17% (9 of 51) of patients without an identifiable mutation, including RPS19, RPS17, RPS26, and RPL35A. (PMID:22045982)
- High frequency of RPS26 gene deletion is associated with Italian Diamond-Blackfan anemia. (PMID:22689679)
- RPS26 acts distinctively in different scenarios of p53 activation. (PMID:23728348)
- Suggest that for nuclear export, nucleophosmin could directly bind to pre-40S subunits in the mRNA exit site region where the C-terminus of eS26 is located. (PMID:29563070)
- eS26-ESS and Tsr2 are components of a nuclear sorting system that co-evolved with the emergence of the nucleocytoplasmic barrier and transport carriers (PMID:30201955)
- A novel insert mutation c.96dupG in RPS26 was identified by whole-exome sequencing, which caused neonatal DBA in a Chinese boy. This is the first case report of a Chinese DBA10 patient who carries a small insertion in the RPS26 gene. These findings expand the mutation diversity of RPS26 and demonstrate the clinical presentations of the Chinese DBA10 patient. (PMID:31277601)
- The final step of 40S ribosomal subunit maturation is controlled by a dual key lock. (PMID:33908345)
- Mendelian Randomization Analysis Identified Potential Genes Pleiotropically Associated with Polycystic Ovary Syndrome. (PMID:34704236)
- The functional role of the eukaryote-specific motif YxxPKxYxK of the human ribosomal protein eS26 in translation. (PMID:35817369)
- Identification of novel mutations in patients with Diamond-Blackfan anemia and literature review of RPS10 and RPS26 mutations. (PMID:37376976)
- Association of RPS26 gene polymorphism with different types of diabetes in Chinese individuals. (PMID:38041572)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | rps26l | ENSDARG00000030408 |
| danio_rerio | rps26 | ENSDARG00000037071 |
| rattus_norvegicus | Rps26l6 | ENSRNOG00000051310 |
| drosophila_melanogaster | RpS26 | FBGN0261597 |
| caenorhabditis_elegans | rps-26 | WBGENE00004495 |
Protein
Protein identifiers
Small ribosomal subunit protein eS26 — P62854 (reviewed: P62854)
Alternative names: 40S ribosomal protein S26
All UniProt accessions (1): P62854
UniProt curated annotations — full annotation on UniProt →
Function. Component of the small ribosomal subunit. The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell.
Subunit / interactions. Component of the 40S small ribosomal subunit.
Subcellular location. Cytoplasm. Cytosol. Rough endoplasmic reticulum.
Disease relevance. Diamond-Blackfan anemia 10 (DBA10) [MIM:613309] An autosomal dominant form of Diamond-Blackfan anemia, a congenital non-regenerative hypoplastic anemia that usually presents early in infancy. Diamond-Blackfan anemia is characterized by a moderate to severe macrocytic anemia, erythroblastopenia, and an increased risk of malignancy. 30 to 40% of Diamond-Blackfan anemia patients present with short stature and congenital anomalies, the most frequent being craniofacial (Pierre-Robin syndrome and cleft palate), thumb and urogenital anomalies. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the eukaryotic ribosomal protein eS26 family.
RefSeq proteins (1): NP_001020* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000892 | Ribosomal_eS26 | Family |
| IPR038551 | Ribosomal_eS26_sf | Homologous_superfamily |
| IPR047864 | Ribosomal_eS26_CS | Conserved_site |
Pfam: PF01283
UniProt features (20 total): strand 5, turn 3, helix 3, sequence variant 2, sequence conflict 2, initiator methionine 1, chain 1, region of interest 1, compositionally biased region 1, modified residue 1
Structure
Experimental structures (PDB)
190 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8GLP | ELECTRON MICROSCOPY | 1.67 |
| 8QOI | ELECTRON MICROSCOPY | 1.9 |
| 9O3W | ELECTRON MICROSCOPY | 1.9 |
| 8YOO | ELECTRON MICROSCOPY | 2 |
| 9C3H | ELECTRON MICROSCOPY | 2 |
| 7R4X | ELECTRON MICROSCOPY | 2.15 |
| 9I2D | ELECTRON MICROSCOPY | 2.19 |
| 9PBE | ELECTRON MICROSCOPY | 2.19 |
| 8YOP | ELECTRON MICROSCOPY | 2.2 |
| 9O3V | ELECTRON MICROSCOPY | 2.2 |
| 9O3Y | ELECTRON MICROSCOPY | 2.2 |
| 8JDK | ELECTRON MICROSCOPY | 2.26 |
| 8G5Y | ELECTRON MICROSCOPY | 2.29 |
| 9S3D | ELECTRON MICROSCOPY | 2.32 |
| 9RPV | ELECTRON MICROSCOPY | 2.35 |
| 9S3B | ELECTRON MICROSCOPY | 2.38 |
| 8K2C | ELECTRON MICROSCOPY | 2.4 |
| 8XSX | ELECTRON MICROSCOPY | 2.4 |
| 9SPF | ELECTRON MICROSCOPY | 2.4 |
| 9SPI | ELECTRON MICROSCOPY | 2.4 |
| 8JDL | ELECTRON MICROSCOPY | 2.42 |
| 9S3C | ELECTRON MICROSCOPY | 2.42 |
| 9QLO | ELECTRON MICROSCOPY | 2.47 |
| 9P8B | ELECTRON MICROSCOPY | 2.48 |
| 7XNY | ELECTRON MICROSCOPY | 2.5 |
| 8JDJ | ELECTRON MICROSCOPY | 2.5 |
| 9RUC | ELECTRON MICROSCOPY | 2.5 |
| 8G60 | ELECTRON MICROSCOPY | 2.54 |
| 8IFE | ELECTRON MICROSCOPY | 2.57 |
| 9P7D | ELECTRON MICROSCOPY | 2.57 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P62854-F1 | 86.09 | 0.55 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 54
Function
Pathways and Gene Ontology
Reactome pathways
50 pathways
| ID | Pathway |
|---|---|
| R-HSA-156827 | L13a-mediated translational silencing of Ceruloplasmin expression |
| R-HSA-156902 | Peptide chain elongation |
| R-HSA-1799339 | SRP-dependent cotranslational protein targeting to membrane |
| R-HSA-192823 | Viral mRNA Translation |
| R-HSA-2408557 | Selenocysteine synthesis |
| R-HSA-6791226 | Major pathway of rRNA processing in the nucleolus and cytosol |
| R-HSA-72649 | Translation initiation complex formation |
| R-HSA-72689 | Formation of a pool of free 40S subunits |
| R-HSA-72695 | Formation of the ternary complex, and subsequently, the 43S complex |
| R-HSA-72702 | Ribosomal scanning and start codon recognition |
| R-HSA-72706 | GTP hydrolysis and joining of the 60S ribosomal subunit |
| R-HSA-72764 | Eukaryotic Translation Termination |
| R-HSA-9010553 | Regulation of expression of SLITs and ROBOs |
| R-HSA-9633012 | Response of EIF2AK4 (GCN2) to amino acid deficiency |
| R-HSA-9735869 | SARS-CoV-1 modulates host translation machinery |
| R-HSA-9754678 | SARS-CoV-2 modulates host translation machinery |
| R-HSA-975956 | Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) |
| R-HSA-975957 | Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) |
| R-HSA-9954714 | PELO:HBS1L and ABCE1 dissociate a ribosome on a non-stop mRNA |
| R-HSA-9954716 | ZNF598 and the Ribosome-associated Quality Trigger (RQT) complex dissociate a ribosome stalled on a no-go mRNA |
| R-HSA-1266738 | Developmental Biology |
| R-HSA-1430728 | Metabolism |
| R-HSA-156842 | Eukaryotic Translation Elongation |
| R-HSA-1643685 | Disease |
| R-HSA-168255 | Influenza Infection |
| R-HSA-168273 | Influenza Viral RNA Transcription and Replication |
| R-HSA-2262752 | Cellular responses to stress |
| R-HSA-2408522 | Selenoamino acid metabolism |
| R-HSA-376176 | Signaling by ROBO receptors |
| R-HSA-392499 | Metabolism of proteins |
MSigDB gene sets: 415 (showing top):
GOBP_CYTOPLASMIC_TRANSLATION, MODULE_52, BASSO_B_LYMPHOCYTE_NETWORK, GOBP_NEGATIVE_REGULATION_OF_RNA_SPLICING, HSIAO_HOUSEKEEPING_GENES, MODULE_16, GOBP_TRANSLATION, GOMF_STRUCTURAL_CONSTITUENT_OF_RIBOSOME, GOBP_RNA_SPLICING, MODULE_18, MODULE_60, DANG_BOUND_BY_MYC, MODULE_29, GOERING_BLOOD_HDL_CHOLESTEROL_QTL_CIS, GOBP_REGULATION_OF_RNA_SPLICING
GO Biological Process (3): cytoplasmic translation (GO:0002181), translation (GO:0006412), negative regulation of RNA splicing (GO:0033119)
GO Molecular Function (5): RNA binding (GO:0003723), mRNA binding (GO:0003729), structural constituent of ribosome (GO:0003735), cadherin binding (GO:0045296), protein binding (GO:0005515)
GO Cellular Component (14): nucleoplasm (GO:0005654), cytoplasm (GO:0005737), cytosol (GO:0005829), ribosome (GO:0005840), small ribosomal subunit (GO:0015935), membrane (GO:0016020), cytosolic small ribosomal subunit (GO:0022627), synapse (GO:0045202), extracellular exosome (GO:0070062), cytoplasmic side of rough endoplasmic reticulum membrane (GO:0098556), endoplasmic reticulum (GO:0005783), rough endoplasmic reticulum (GO:0005791), cytosolic ribosome (GO:0022626), ribonucleoprotein complex (GO:1990904)
Reactome top-level categories
Rollup of top-14 pathways:
| Category | Pathways |
|---|---|
| Cap-dependent Translation Initiation | 4 |
| Translation | 2 |
| Nonsense-Mediated Decay (NMD) | 2 |
| Ribosome-associated quality control | 2 |
| Eukaryotic Translation Initiation | 1 |
| Eukaryotic Translation Elongation | 1 |
| Influenza Viral RNA Transcription and Replication | 1 |
| Selenoamino acid metabolism | 1 |
| rRNA processing in the nucleus and cytosol | 1 |
| Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S | 1 |
| Signaling by ROBO receptors | 1 |
| Cellular response to starvation | 1 |
| SARS-CoV-1-host interactions | 1 |
| SARS-CoV-2-host interactions | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| ribosome | 2 |
| cytoplasm | 2 |
| translation | 1 |
| peptidyltransferase activity | 1 |
| translational initiation | 1 |
| translational elongation | 1 |
| translational termination | 1 |
| macromolecule biosynthetic process | 1 |
| protein metabolic process | 1 |
| protein biosynthetic process | 1 |
| RNA splicing | 1 |
| negative regulation of gene expression | 1 |
| regulation of RNA splicing | 1 |
| nucleic acid binding | 1 |
| RNA binding | 1 |
| structural molecule activity | 1 |
| cell adhesion molecule binding | 1 |
| binding | 1 |
| nuclear lumen | 1 |
| intracellular anatomical structure | 1 |
| intracellular membraneless organelle | 1 |
| ribosomal subunit | 1 |
| small ribosomal subunit | 1 |
| cytosolic ribosome | 1 |
| cell junction | 1 |
| extracellular vesicle | 1 |
| rough endoplasmic reticulum membrane | 1 |
| cytoplasmic side of endoplasmic reticulum membrane | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
| endoplasmic reticulum | 1 |
| cytosol | 1 |
| protein-containing complex | 1 |
Protein interactions and networks
STRING
0 interactions, top by confidence (×1000):
IntAct
250 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MAP3K14 | CHUK | psi-mi:“MI:0914”(association) | 0.950 |
| TSR2 | RPS26 | psi-mi:“MI:0915”(physical association) | 0.880 |
| RPS26 | TSR2 | psi-mi:“MI:0915”(physical association) | 0.880 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| RACK1 | RPS17 | psi-mi:“MI:0915”(physical association) | 0.610 |
| OTX2 | RPS26 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SDCBP | RPS26 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MAPT | KIF2A | psi-mi:“MI:0914”(association) | 0.530 |
| UBE3A | HERC2 | psi-mi:“MI:0914”(association) | 0.500 |
| CFTR | CNOT1 | psi-mi:“MI:0914”(association) | 0.480 |
| ESR1 | psi-mi:“MI:0914”(association) | 0.460 | |
| ESR2 | FBLL1 | psi-mi:“MI:0914”(association) | 0.460 |
| FUS | DDX3X | psi-mi:“MI:0914”(association) | 0.430 |
| NDRG1 | RPS26 | psi-mi:“MI:0915”(physical association) | 0.400 |
| GNAT3 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| RPS26 | E7 | psi-mi:“MI:0915”(physical association) | 0.370 |
BioGRID (579): TSR2 (Two-hybrid), RPS26 (Affinity Capture-MS), RPS26 (Affinity Capture-MS), RPS26 (Affinity Capture-MS), TSR2 (Two-hybrid), ARID4B (Co-fractionation), ARID4B (Co-fractionation), RPL10A (Co-fractionation), RPL10A (Co-fractionation), RPL12 (Co-fractionation), RPL12 (Co-fractionation), RPL15 (Co-fractionation), RPL15 (Co-fractionation), RPL23A (Co-fractionation), RPL23A (Co-fractionation)
ESM2 similar proteins: A5JSS2, A6H769, E2RKA8, G1SHQ2, G1SNY0, G1SQH0, G1SVB0, O09167, O14602, P12749, P14115, P18445, P20280, P30742, P41567, P46776, P46778, P47813, P47832, P49171, P49666, P61251, P61254, P61255, P61256, P61257, P62081, P62082, P62083, P62854, P62855, P62856, P62910, P62911, P62912, Q3SZQ6, Q4R723, Q56JV1, Q56K03, Q5E938
Diamond homologs: G1TFE8, O45499, O93931, P13008, P21772, P27085, P30742, P39938, P39939, P41692, P41959, P49171, P49206, P49216, P61251, P62854, P62855, P62856, Q54TL8, Q56JV1, Q5ALV6, Q5JNZ5, Q6Q312, Q8LPJ7, Q8SRN2, Q9BHU1, Q9GT45, Q9LYK9, Q9UT56, Q9UTG4
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| RPS26 | “form complex” | “40S cytosolic small ribosomal subunit” | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 152 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Formation of the ternary complex, and subsequently, the 43S complex | 8 | 15.2× | 2e-06 |
| Ribosomal scanning and start codon recognition | 9 | 15.2× | 3e-07 |
| SRP-dependent cotranslational protein targeting to membrane | 17 | 15.1× | 3e-13 |
| GTP hydrolysis and joining of the 60S ribosomal subunit | 17 | 15.1× | 3e-13 |
| Formation of a pool of free 40S subunits | 15 | 14.9× | 9e-12 |
| L13a-mediated translational silencing of Ceruloplasmin expression | 16 | 14.3× | 3e-12 |
| Eukaryotic Translation Termination | 13 | 13.8× | 8e-10 |
| Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) | 13 | 13.5× | 9e-10 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| formation of cytoplasmic translation initiation complex | 5 | 41.0× | 2e-05 |
| stress granule assembly | 5 | 22.0× | 3e-04 |
| cytoplasmic translation | 16 | 21.6× | 2e-14 |
| translational initiation | 8 | 20.9× | 1e-06 |
| ribosomal large subunit biogenesis | 5 | 16.2× | 1e-03 |
| stem cell population maintenance | 5 | 15.4× | 2e-03 |
| mRNA stabilization | 5 | 13.4× | 2e-03 |
| negative regulation of translation | 9 | 12.9× | 8e-06 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
188 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 22 |
| Likely pathogenic | 8 |
| Uncertain significance | 58 |
| Likely benign | 75 |
| Benign | 13 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1076796 | NM_001029.5(RPS26):c.9_12del (p.Lys4fs) | Pathogenic |
| 1765045 | NM_001029.5(RPS26):c.88del (p.Val30fs) | Pathogenic |
| 1798678 | NM_001029.5(RPS26):c.2T>C (p.Met1Thr) | Pathogenic |
| 187849 | NM_001029.5(RPS26):c.259C>T (p.Arg87Ter) | Pathogenic |
| 187850 | NM_001029.5(RPS26):c.4-2A>T | Pathogenic |
| 2027475 | NM_001029.5(RPS26):c.78_79del (p.Ala27fs) | Pathogenic |
| 2697519 | NM_001029.5(RPS26):c.4-1_6del | Pathogenic |
| 3232371 | NM_001029.5(RPS26):c.19_25dup (p.Gly9fs) | Pathogenic |
| 3358915 | NM_001029.5(RPS26):c.82C>T (p.Arg28Ter) | Pathogenic |
| 3643952 | NM_001029.5(RPS26):c.17_20del (p.Arg6fs) | Pathogenic |
| 3721946 | NM_001029.5(RPS26):c.103del (p.Ala35fs) | Pathogenic |
| 470476 | NM_001029.5(RPS26):c.224_225del (p.Val75fs) | Pathogenic |
| 489313 | NM_001029.5(RPS26):c.219C>G (p.Tyr73Ter) | Pathogenic |
| 598993 | NM_001029.5(RPS26):c.1A>C (p.Met1Leu) | Pathogenic |
| 6122 | NM_001029.5(RPS26):c.1A>G (p.Met1Val) | Pathogenic |
| 6123 | NM_001029.5(RPS26):c.1A>T (p.Met1Leu) | Pathogenic |
| 6124 | NM_001029.5(RPS26):c.97G>A (p.Asp33Asn) | Pathogenic |
| 6125 | NM_001029.5(RPS26):c.31dup (p.Ala11fs) | Pathogenic |
| 6126 | NM_001029.5(RPS26):c.3+1G>A | Pathogenic |
| 929406 | NM_001029.5(RPS26):c.181+1del | Pathogenic |
| 933891 | NM_001029.5(RPS26):c.2T>G (p.Met1Arg) | Pathogenic |
| 934123 | NM_001029.5(RPS26):c.196A>T (p.Lys66Ter) | Pathogenic |
| 1325016 | NM_001029.5(RPS26):c.3+2T>G | Likely pathogenic |
| 1727856 | NM_001029.5(RPS26):c.312+1G>C | Likely pathogenic |
| 1727981 | NM_001029.5(RPS26):c.313-2A>G | Likely pathogenic |
| 1787909 | NM_001029.5(RPS26):c.221G>A (p.Cys74Tyr) | Likely pathogenic |
| 2433019 | NM_001029.5(RPS26):c.181+1G>A | Likely pathogenic |
| 2690689 | NM_001029.5(RPS26):c.2T>A (p.Met1Lys) | Likely pathogenic |
| 4077475 | NM_001029.5(RPS26):c.182-1G>C | Likely pathogenic |
| 812897 | NM_001029.5(RPS26):c.312+2T>A | Likely pathogenic |
SpliceAI
399 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 12:56042166:GATG:G | donor_gain | 1.0000 |
| 12:56042420:CGCA:C | acceptor_loss | 1.0000 |
| 12:56042421:GCAG:G | acceptor_loss | 1.0000 |
| 12:56042422:CAGA:C | acceptor_loss | 1.0000 |
| 12:56042423:A:AG | acceptor_gain | 1.0000 |
| 12:56042424:G:A | acceptor_loss | 1.0000 |
| 12:56042424:G:GG | acceptor_gain | 1.0000 |
| 12:56042424:GA:G | acceptor_gain | 1.0000 |
| 12:56042424:GACAA:G | acceptor_gain | 1.0000 |
| 12:56042599:GATG:G | donor_gain | 1.0000 |
| 12:56042600:ATG:A | donor_gain | 1.0000 |
| 12:56042600:ATGGT:A | donor_loss | 1.0000 |
| 12:56042601:TG:T | donor_gain | 1.0000 |
| 12:56042602:GG:G | donor_gain | 1.0000 |
| 12:56042603:G:GG | donor_gain | 1.0000 |
| 12:56042603:G:T | donor_loss | 1.0000 |
| 12:56042604:T:A | donor_loss | 1.0000 |
| 12:56043358:CTTA:C | acceptor_loss | 1.0000 |
| 12:56043360:TA:T | acceptor_loss | 1.0000 |
| 12:56043361:A:AG | acceptor_gain | 1.0000 |
| 12:56043362:G:GA | acceptor_gain | 1.0000 |
| 12:56043362:GC:G | acceptor_gain | 1.0000 |
| 12:56043362:GCC:G | acceptor_gain | 1.0000 |
| 12:56043362:GCCT:G | acceptor_gain | 1.0000 |
| 12:56043362:GCCTA:G | acceptor_gain | 1.0000 |
| 12:56043489:CTGCG:C | donor_gain | 1.0000 |
| 12:56043490:TGCG:T | donor_gain | 1.0000 |
| 12:56043490:TGCGG:T | donor_loss | 1.0000 |
| 12:56043491:GCG:G | donor_gain | 1.0000 |
| 12:56043491:GCGG:G | donor_gain | 1.0000 |
AlphaMissense
742 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 12:56042488:T:C | C23R | 1.000 |
| 12:56042519:A:T | D33V | 1.000 |
| 12:56042525:C:A | A35D | 1.000 |
| 12:56042528:T:A | I36N | 1.000 |
| 12:56042558:A:T | E46V | 1.000 |
| 12:56042567:C:A | A49E | 1.000 |
| 12:56042575:G:C | D52H | 1.000 |
| 12:56042576:A:C | D52A | 1.000 |
| 12:56042576:A:T | D52V | 1.000 |
| 12:56043414:C:A | A78E | 1.000 |
| 12:56043432:T:A | V84D | 1.000 |
| 12:56043435:G:C | R85T | 1.000 |
| 12:56043435:G:T | R85M | 1.000 |
| 12:56042435:G:C | R5T | 0.999 |
| 12:56042435:G:T | R5I | 0.999 |
| 12:56042438:G:T | R6M | 0.999 |
| 12:56042446:G:C | G9R | 0.999 |
| 12:56042447:G:A | G9D | 0.999 |
| 12:56042447:G:T | G9V | 0.999 |
| 12:56042467:G:C | G16R | 0.999 |
| 12:56042468:G:T | G16V | 0.999 |
| 12:56042488:T:A | C23S | 0.999 |
| 12:56042489:G:A | C23Y | 0.999 |
| 12:56042489:G:C | C23S | 0.999 |
| 12:56042489:G:T | C23F | 0.999 |
| 12:56042490:C:G | C23W | 0.999 |
| 12:56042497:T:C | C26R | 0.999 |
| 12:56042498:G:A | C26Y | 0.999 |
| 12:56042498:G:T | C26F | 0.999 |
| 12:56042499:T:G | C26W | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000432413 (12:56040082 C>G,T), RS1000569422 (12:56041548 T>C), RS1002429970 (12:56041418 A>T), RS1002926309 (12:56044544 A>G), RS1003654086 (12:56040010 C>T), RS1003929122 (12:56039954 A>G), RS1004550196 (12:56041179 C>T), RS1004936086 (12:56041609 G>A), RS1005910101 (12:56042377 C>G,T), RS1007041064 (12:56045029 G>A), RS1007150564 (12:56045184 G>A,T), RS1007204149 (12:56041713 AAGGGGGGG>A), RS1008008847 (12:56040112 G>A), RS1008067637 (12:56040684 G>A), RS1008828778 (12:56043676 A>G,T)
Disease associations
OMIM: gene MIM:603701 | disease phenotypes: MIM:613309, MIM:105650, MIM:606164
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Diamond-Blackfan anemia 10 | Definitive | Autosomal dominant |
| Diamond-Blackfan anemia | Supportive | Autosomal dominant |
Mondo (5): Diamond-Blackfan anemia 10 (MONDO:0013217), Diamond-Blackfan anemia (MONDO:0015253), Diamond-Blackfan anemia 15 with mandibulofacial dysostosis (MONDO:0011639), pure red-cell aplasia (MONDO:0001705), anemia (MONDO:0002280)
Orphanet (1): Diamond-Blackfan anemia (Orphanet:124)
HPO phenotypes
82 total (30 of 82 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000047 | Hypospadias |
| HP:0000075 | Renal duplication |
| HP:0000085 | Horseshoe kidney |
| HP:0000086 | Ectopic kidney |
| HP:0000104 | Renal agenesis |
| HP:0000119 | Abnormality of the genitourinary system |
| HP:0000175 | Cleft palate |
| HP:0000185 | Cleft soft palate |
| HP:0000218 | High palate |
| HP:0000234 | Abnormality of the head |
| HP:0000252 | Microcephaly |
| HP:0000272 | Malar flattening |
| HP:0000286 | Epicanthus |
| HP:0000294 | Low anterior hairline |
| HP:0000316 | Hypertelorism |
| HP:0000347 | Micrognathia |
| HP:0000358 | Posteriorly rotated ears |
| HP:0000365 | Hearing impairment |
| HP:0000369 | Low-set ears |
| HP:0000405 | Conductive hearing impairment |
| HP:0000413 | Atresia of the external auditory canal |
| HP:0000431 | Wide nasal bridge |
| HP:0000453 | Choanal atresia |
| HP:0000465 | Webbed neck |
| HP:0000470 | Short neck |
| HP:0000475 | Broad neck |
| HP:0000486 | Strabismus |
| HP:0000508 | Ptosis |
| HP:0000519 | Developmental cataract |
GWAS associations
22 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000834_8 | Psoriasis | 1.000000e-06 |
| GCST001670_1 | Vitiligo | 8.000000e-12 |
| GCST002738_1 | Psoriasis | 1.000000e-07 |
| GCST002740_72 | Inflammatory skin disease | 4.000000e-08 |
| GCST002774_24 | Cognitive function | 3.000000e-07 |
| GCST003988_25 | Hypothyroidism | 8.000000e-08 |
| GCST004166_45 | Nonsyndromic cleft lip with cleft palate | 1.000000e-09 |
| GCST004367_1 | Anorexia nervosa | 4.000000e-09 |
| GCST006911_22 | Asthma (moderate or severe) | 1.000000e-09 |
| GCST007563_23 | Allergic disease (asthma, hay fever or eczema) | 4.000000e-10 |
| GCST007564_9 | Asthma or allergic disease (pleiotropy) | 1.000000e-13 |
| GCST007798_148 | Asthma | 8.000000e-25 |
| GCST007799_4 | Asthma (adult onset) | 4.000000e-15 |
| GCST007932_123 | Medication use (thyroid preparations) | 1.000000e-14 |
| GCST007941_4 | Medication use (adrenergics, inhalants) | 5.000000e-17 |
| GCST008595_119 | Cognitive ability, years of educational attainment or schizophrenia (pleiotropy) | 1.000000e-14 |
| GCST008916_124 | Asthma | 1.000000e-16 |
| GCST009798_45 | Asthma | 1.000000e-15 |
| GCST010002_217 | Refractive error | 6.000000e-174 |
| GCST010703_297 | Brain morphology (MOSTest) | 4.000000e-10 |
| GCST90002388_434 | Lymphocyte count | 1.000000e-11 |
| GCST90013405_25 | Liver enzyme levels (alanine transaminase) | 3.000000e-11 |
EFO canonical traits (8, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004337 | intelligence |
| EFO:0003959 | cleft lip |
| EFO:1002011 | adult onset asthma |
| EFO:0009933 | Thyroid preparation use measurement |
| EFO:0009941 | Inhalant adrenergic use measurement |
| EFO:0004784 | self reported educational attainment |
| EFO:0004346 | neuroimaging measurement |
| EFO:0004587 | lymphocyte count |
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D000740 | Anemia | C15.378.050 |
| D029503 | Anemia, Diamond-Blackfan | C15.378.050.085.080.090; C15.378.050.750.500; C15.378.190.223.500.500.090; C16.320.077.090 |
| D012010 | Red-Cell Aplasia, Pure | C15.378.050.750 |
| C567649 | Diamond-Blackfan Anemia 10 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL3987582 (PROTEIN NUCLEIC-ACID COMPLEX)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL6067484 | GENTAMICIN SULFATE | 4 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
46 potent at pChembl≥5 of 50 total, top 45 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.52 | IC50 | 300 | nM | CHEMBL4109308 |
| 6.42 | IC50 | 380 | nM | CHEMBL4109308 |
| 6.42 | IC50 | 380 | nM | CHEMBL4574496 |
| 6.41 | IC50 | 390 | nM | CHEMBL4126894 |
| 6.39 | IC50 | 410 | nM | CHEMBL4114159 |
| 6.35 | IC50 | 450 | nM | CHEMBL4126496 |
| 6.30 | IC50 | 500 | nM | CHEMBL4574496 |
| 6.30 | IC50 | 500 | nM | CHEMBL4560206 |
| 6.16 | IC50 | 690 | nM | CHEMBL4130157 |
| 6.15 | IC50 | 710 | nM | CHEMBL4108338 |
| 6.11 | IC50 | 780 | nM | CHEMBL4114159 |
| 6.09 | IC50 | 820 | nM | CHEMBL4109308 |
| 6.07 | IC50 | 850 | nM | CHEMBL4107559 |
| 6.07 | IC50 | 850 | nM | CHEMBL4533299 |
| 6.05 | IC50 | 900 | nM | CHEMBL4126894 |
| 6.05 | IC50 | 900 | nM | CHEMBL4126496 |
| 6.04 | IC50 | 920 | nM | CHEMBL4554909 |
| 5.97 | IC50 | 1060 | nM | CHEMBL4128388 |
| 5.89 | IC50 | 1290 | nM | CHEMBL4130157 |
| 5.86 | IC50 | 1370 | nM | CHEMBL4107559 |
| 5.84 | IC50 | 1440 | nM | CHEMBL4108338 |
| 5.81 | IC50 | 1540 | nM | CHEMBL4534859 |
| 5.76 | IC50 | 1730 | nM | CHEMBL4534859 |
| 5.69 | IC50 | 2050 | nM | CHEMBL4566239 |
| 5.68 | IC50 | 2080 | nM | CHEMBL4446635 |
| 5.66 | IC50 | 2210 | nM | CHEMBL4446635 |
| 5.66 | EC50 | 2200 | nM | CHEMBL4464929 |
| 5.64 | IC50 | 2270 | nM | CHEMBL4533299 |
| 5.63 | IC50 | 2330 | nM | CHEMBL4566239 |
| 5.62 | IC50 | 2380 | nM | CHEMBL4128388 |
| 5.58 | IC50 | 2630 | nM | CHEMBL4128250 |
| 5.55 | IC50 | 2820 | nM | CHEMBL4127458 |
| 5.53 | IC50 | 2970 | nM | CHEMBL4127311 |
| 5.51 | IC50 | 3080 | nM | CHEMBL4126072 |
| 5.46 | IC50 | 3500 | nM | CHEMBL4525277 |
| 5.44 | IC50 | 3630 | nM | CHEMBL4469712 |
| 5.39 | IC50 | 4100 | nM | CHEMBL4128560 |
| 5.37 | IC50 | 4300 | nM | CHEMBL4127016 |
| 5.36 | IC50 | 4380 | nM | CHEMBL4527910 |
| 5.16 | IC50 | 7000 | nM | CHEMBL4109308 |
| 5.13 | IC50 | 7400 | nM | CHLORAMPHENICOL SULFATE SALT |
| 5.09 | IC50 | 8040 | nM | CHEMBL4128250 |
| 5.08 | IC50 | 8370 | nM | CHEMBL4128250 |
| 5.03 | IC50 | 9320 | nM | CHEMBL4127016 |
| 5.03 | IC50 | 9240 | nM | CHEMBL4128560 |
PubChem BioAssay actives
46 with measured affinity, of 205 total; 26 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| N-(3-chloro-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-4-(triazolo[4,5-b]pyridin-3-yl)benzamide | 1585498: Binding affinity to 80S ribosome in human HuH7 cells expressing human C-terminal V5/6-His-tagged PCSK9 assessed as inhibition of PCSK9 secretion after 16 to 24 hrs by AlphaLISA method | ic50 | 0.3000 | uM |
| N-(3-chloro-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-3-[4-(triazolo[4,5-b]pyridin-3-yl)phenyl]propanamide | 1532845: Binding affinity to 80S ribosome in human HuH7 cells harboring human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.3800 | uM |
| N-isoquinolin-1-yl-N-[(3R)-piperidin-3-yl]-4-(triazolo[4,5-b]pyridin-3-yl)benzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.3900 | uM |
| N-(3-chloro-2-pyridinyl)-4-(6-methyltriazolo[4,5-b]pyridin-3-yl)-N-[(3R)-piperidin-3-yl]benzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.4100 | uM |
| N-(3-chloro-2-pyridinyl)-4-(5-methyltriazolo[4,5-b]pyridin-3-yl)-N-[(3R)-piperidin-3-yl]benzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.4500 | uM |
| N-(1-methylpyrrolo[2,3-c]pyridin-7-yl)-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 0.5000 | uM |
| N-isoquinolin-1-yl-N-[(3R)-piperidin-3-yl]-4-pyrazolo[1,5-a]pyrimidin-3-ylbenzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.6900 | uM |
| N-(3-chloro-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-5-(triazolo[4,5-b]pyridin-3-yl)pyridine-2-carboxamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.7100 | uM |
| N-(3-chloro-2-pyridinyl)-3-[5-(6-methyltriazolo[4,5-b]pyridin-3-yl)-2-pyridinyl]-N-[(3R)-piperidin-3-yl]propanamide | 1532845: Binding affinity to 80S ribosome in human HuH7 cells harboring human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.8500 | uM |
| N-(3-chloro-2-pyridinyl)-5-(6-methyltriazolo[4,5-b]pyridin-3-yl)-N-[(3R)-piperidin-3-yl]pyridine-2-carboxamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 0.8500 | uM |
| N-(3-methyl-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-4-pyrazolo[1,5-a]pyrimidin-3-ylpiperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 0.9200 | uM |
| N-isoquinolin-1-yl-4-(1-methylpyrazol-4-yl)-N-[(3R)-piperidin-3-yl]benzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 1.0600 | uM |
| N-isoquinolin-1-yl-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 1.5400 | uM |
| N-(3-methyl-2-pyridinyl)-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532845: Binding affinity to 80S ribosome in human HuH7 cells harboring human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 2.0500 | uM |
| N-(3-chloro-2-pyridinyl)-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 2.0800 | uM |
| N-(5,8-dihydroisoquinolin-1-yl)-3-(4-methoxyphenyl)-N-[(3R)-piperidin-3-yl]propanamide | 1584424: Inhibition of human 80S ribosome-mediated PCSK9 translation expressed in CHO-K1 cells assessed as reduction in PCSK9 secretion | ec50 | 2.2000 | uM |
| N-isoquinolin-1-yl-3-(4-methoxyphenyl)-N-[(3R)-piperidin-3-yl]propanamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 2.6300 | uM |
| N-(3-chloro-2-pyridinyl)-4-(6-methylpyrazin-2-yl)-N-[(3R)-piperidin-3-yl]benzamide | 1497963: Binding affinity to 80S ribosome in human HuH7 cells assessed as inhibition of PCSK9 mRNA translation after overnight incubation by ELISA | ic50 | 2.8200 | uM |
| N-(3-chloro-2-pyridinyl)-4-[6-(dimethylamino)pyrazin-2-yl]-N-[(3R)-piperidin-3-yl]benzamide | 1497963: Binding affinity to 80S ribosome in human HuH7 cells assessed as inhibition of PCSK9 mRNA translation after overnight incubation by ELISA | ic50 | 2.9700 | uM |
| N-(3-chloro-2-pyridinyl)-4-[6-(methylamino)pyrazin-2-yl]-N-[(3R)-piperidin-3-yl]benzamide | 1497963: Binding affinity to 80S ribosome in human HuH7 cells assessed as inhibition of PCSK9 mRNA translation after overnight incubation by ELISA | ic50 | 3.0800 | uM |
| N-isoquinolin-1-yl-4-(6-methyl-1,2-benzoxazol-3-yl)-N-[(3R)-piperidin-3-yl]piperazine-1-carboxamide | 1532845: Binding affinity to 80S ribosome in human HuH7 cells harboring human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 3.5000 | uM |
| N-(3-methylpyrazin-2-yl)-4-phenyl-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 3.6300 | uM |
| N-(3-chloro-2-pyridinyl)-N-[(3R)-piperidin-3-yl]-6-(triazolo[4,5-b]pyridin-3-yl)pyridine-3-carboxamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 4.1000 | uM |
| N-isoquinolin-1-yl-N-[(3R)-piperidin-3-yl]-4-pyrazin-2-ylbenzamide | 1497947: Binding affinity to 80S ribosome in human HuH7 cells harboring pCMV-truncated human PCSK9 (1 to 152 residues)-proLuc assessed as inhibition of PCSK9 mRNA translation after overnight incubation by luciferase reporter gene assay | ic50 | 4.3000 | uM |
| 4-(2-fluorophenyl)-N-(3-methyl-2-pyridinyl)-N-[(3R)-piperidin-3-yl]piperidine-1-carboxamide | 1532846: Binding affinity to 80S ribosome in human HeLa cells lysates using human full length PCSK9 encoding mRNAs assessed as inhibition of PCSK9 mRNA translation after 45 mins by Steady-Glo luciferase reporter gene assay | ic50 | 4.3800 | uM |
| 2,2-dichloro-N-[(1R,2R)-1,3-dihydroxy-1-(4-nitrophenyl)propan-2-yl]acetamide;sulfuric acid | 717551: Inhibition of mitochondrial ribosome-mediated protein synthesis in human HeLa cells assessed as {35S]methionine incorporation by autoradiography | ic50 | 7.4000 | uM |
CTD chemical–gene interactions
49 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | affects expression, decreases expression | 4 |
| sodium arsenite | affects cotreatment, increases abundance, increases expression, affects binding, decreases reaction (+1 more) | 2 |
| Copper Sulfate | decreases expression, increases expression | 2 |
| Particulate Matter | decreases expression, increases abundance | 2 |
| 2,4,6-tribromophenol | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| pyrogallol 1,3-dimethyl ether | affects cotreatment, affects localization, increases expression | 1 |
| decabromobiphenyl ether | decreases expression | 1 |
| arsenite | affects binding, increases reaction | 1 |
| methylparaben | decreases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| tetrabromobisphenol A | decreases expression | 1 |
| manganese chloride | affects cotreatment, increases abundance, increases expression | 1 |
| 3-(4’-hydroxy-3’-adamantylbiphenyl-4-yl)acrylic acid | decreases expression | 1 |
| nutlin 3 | affects cotreatment, increases secretion | 1 |
| bisphenol B | increases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 1 |
| Grape Seed Proanthocyanidins | increases expression, affects cotreatment | 1 |
| pentabrominated diphenyl ether 100 | decreases expression | 1 |
| hexabrominated diphenyl ether 153 | decreases expression | 1 |
| bisphenol AF | increases expression | 1 |
| 4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acid | decreases expression | 1 |
| Leflunomide | decreases expression | 1 |
| Air Pollutants | increases abundance, decreases expression | 1 |
| Air Pollutants, Occupational | decreases expression | 1 |
| Arsenic | affects cotreatment, increases abundance, increases expression | 1 |
| Benzo(a)pyrene | decreases expression | 1 |
| Caffeine | increases expression | 1 |
| Catechin | increases expression, affects cotreatment | 1 |
| Dactinomycin | affects cotreatment, increases secretion | 1 |
ChEMBL screening assays
89 unique, capped per target: 89 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1920845 | Binding | Induction of ribosome to readthrough in human A-T lymphoblastoid cells assessed as ATM ser1981 autophosphorylation at 30 uM after 4 days by PTT-ELISA assay | Synthesis and evaluation of compounds that induce readthrough of premature termination codons. — Bioorg Med Chem Lett |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00673608 | PHASE4 | COMPLETED | Magnetic Resonance Imaging (MRI) Assessments of the Heart and Liver Iron Load in Patients With Transfusion Induced Iron Overload |
| NCT03364764 | PHASE4 | COMPLETED | Sirolimus Treatment for Refractory PRCA |
| NCT03540472 | PHASE4 | UNKNOWN | Tacrolimus Treatment for Refractory PRCA |
| NCT03918265 | PHASE4 | UNKNOWN | Tacrolimus Treatment for Refractory Autoimmune Cytopenia |
| NCT04470804 | PHASE4 | COMPLETED | Sirolimus Treatment for Newly Diagnosed Primary Acquired PRCA |
| NCT00003398 | PHASE4 | COMPLETED | Bone Marrow Transplantation in Treating Patients With Hematologic Cancer |
| NCT00022386 | PHASE4 | COMPLETED | Epoetin Alfa in Treating Chemotherapy-Related Anemia in Women With Stage I, Stage II, or Stage III Breast Cancer |
| NCT00046969 | PHASE4 | COMPLETED | Epoetin Beta in Treating Anemia in Patients With Cervical Cancer |
| NCT00111995 | PHASE4 | COMPLETED | Evaluating Aranesp® for the Treatment of Anemia in African-American Subjects With Chronic Renal Failure (CRF) Receiving Hemodialysis |
| NCT00117039 | PHASE4 | COMPLETED | A Study to Evaluate the Effectiveness of Aranesp® for Cancer Patients With Anemia |
| NCT00117065 | PHASE4 | COMPLETED | Study of Transplant Related Anemia Treated With Aranesp® (STRATA) |
| NCT00117117 | PHASE4 | COMPLETED | A Study to Assess Symptom Burden in Subjects With Nonmyeloid Malignancies Receiving Chemotherapy and Aranesp® |
| NCT00126334 | PHASE4 | COMPLETED | Conservative Versus Liberal Red Cell Transfusion in Myocardial Infarction Trial: The CRIT Pilot |
| NCT00153868 | PHASE4 | COMPLETED | A Web-based Study of Quality of Life Benefits Associated Aranesp in Anemic Patients With Cancer |
| NCT00168948 | PHASE4 | UNKNOWN | Intermittent Antimalaria Treatment With SP in African Children |
| NCT00173706 | PHASE4 | UNKNOWN | Evaluation of the Effects of L-Carnitine Injection in Patients Undergoing Hemodialysis |
| NCT00194857 | PHASE4 | TERMINATED | Treatment of Anemia and Neutropenia in HIV/HCV Coinfected Patients Treated With Pegylated Interferon and Ribavirin |
| NCT00204334 | PHASE4 | COMPLETED | Effects of Anemia Correction on Vascular and Monocyte Function in Renal Transplant Recipients |
| NCT00206739 | PHASE4 | COMPLETED | Intermittent Treatment With Sulfadoxine-pyrimethamine for Malaria Control in Infants |
| NCT00211120 | PHASE4 | TERMINATED | Correction of Hemoglobin and Outcomes in Renal Insufficiency (CHOIR) |
| NCT00216541 | PHASE4 | COMPLETED | A Study of the Safety and Effectiveness of Epoetin Alfa on Hemoglobin Levels and Blood Transfusions in Cancer Patients Receiving Chemotherapy |
| NCT00223938 | PHASE4 | TERMINATED | Study of the Efficacy and Safety of Ferrlecit in the Maintenance Dosing in Hemodialysis Patients. |
| NCT00223964 | PHASE4 | COMPLETED | Study of the Efficacy of Two Doses of Ferrlecit in the Treatment of Iron Deficiency in Pediatric Hemodialysis Patients |
| NCT00224003 | PHASE4 | COMPLETED | Study of the Safety and Efficacy of Ferrlecit® Maintenance Dosing in Pediatric Hemodialysis Patients |
| NCT00224068 | PHASE4 | COMPLETED | Effect of Iron Therapy as an Adjunct to Epoetin Alfa in the Anemia of Cancer Chemotherapy |
| NCT00239642 | PHASE4 | COMPLETED | Safety and Efficacy of Iron Sucrose in Children |
| NCT00247507 | PHASE4 | UNKNOWN | The Effects of Acetylcysteine on Alleviating Damage of Oxidative Stress in Hemodialysis Patients |
| NCT00248716 | PHASE4 | UNKNOWN | Treatment of Anemia in the 2nd Year of Life. Comparison of the Efficacy of Two Different Iron Preparations. |
| NCT00283465 | PHASE4 | COMPLETED | A Study of the Effectiveness and Safety of Treatment With Epoetin Alfa on Hemoglobin Levels, Red Blood Cell Transfusions, and Quality of Life in Patients With Cancer Receiving Platinum-containing Chemotherapy |
| NCT00312871 | PHASE4 | TERMINATED | Effects of Early Correction of Anemia in Patients With Chronic Renal Insufficiency |
| NCT00315484 | PHASE4 | COMPLETED | Hematologic Response of Epoetin Alfa (PROCRIT) Versus Darbepoetin Alfa (ARANESP) in Chemotherapy Induced Anemia |
| NCT00317902 | PHASE4 | COMPLETED | An Open-Label Study to Evaluate the Effect of Every Other Week PROCRIT� (Epoetin Alfa) Dosing (40,000-60,000 Units) On Maintaining Quality of Life and Target Hemoglobin Levels in Anemic HIV-Infected Patients (CHAMPS II) |
| NCT00335023 | PHASE4 | COMPLETED | Well Being of Obstetric Patients on Minimal Blood Transfusions |
| NCT00338468 | PHASE4 | TERMINATED | A Study to Assess Disability in Anemic Elderly Patients With Kidney Disease Receiving PROCRIT (Epoetin Alfa) |
| NCT00377481 | PHASE4 | COMPLETED | COMFORT Study: A Crossover Study of NeoRecormon (Epoetin Beta) and Darbepoetin Alfa in Patients With Renal Anemia. |
| NCT00396435 | PHASE4 | COMPLETED | Correction of Anaemia and Progression of Renal Failure on Transplanted Patients |
| NCT00401869 | PHASE4 | COMPLETED | The Effect of PROCRIT (Epoetin Alfa) on Postoperative Vigor and Handgrip Strength (VIGOR Study) |
| NCT00413101 | PHASE4 | COMPLETED | A Study of NeoRecormon (Epoetin Beta) in Patients With End Stage Renal Disease. |
| NCT00431496 | PHASE4 | COMPLETED | A Study of Cinacalcet to Improve Achievement of National Kidney Foundation Kidney Disease Outcomes Quality Initiative (K/DOQI) Targets in Patients With End Stage Renal Disease (ESRD) |
| NCT00437723 | PHASE4 | COMPLETED | A Study of NeoRecormon in Patients With Chronic Kidney Disease. |
Related Atlas pages
- Associated diseases: Diamond-Blackfan anemia 10, Diamond-Blackfan anemia
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): allergic disease, anemia, anorexia nervosa, asthma, Diamond-Blackfan anemia, Diamond-Blackfan anemia 10, Diamond-Blackfan anemia 15 with mandibulofacial dysostosis, hypothyroidism, psoriasis, pure red-cell aplasia, vitiligo