RPS6KA5

gene
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Also known as MSK1RLPK

Summary

RPS6KA5 (ribosomal protein S6 kinase A5, HGNC:10434) is a protein-coding gene on chromosome 14q32.11, encoding Ribosomal protein S6 kinase alpha-5 (O75582). Serine/threonine-protein kinase that is required for the mitogen or stress-induced phosphorylation of the transcription factors CREB1 and ATF1 and for the regulation of the transcription factors RELA, STAT3 and ETV1/ER81, and that contributes to gene activation by histone phosph….

Enables ATP binding activity and protein kinase activity. Involved in several processes, including interleukin-1-mediated signaling pathway; protein modification process; and regulation of DNA-templated transcription. Located in cytoplasm and nucleoplasm.

Source: NCBI Gene 9252 — RefSeq curated summary.

At a glance

  • GWAS associations: 23
  • Clinical variants (ClinVar): 94 total
  • Druggable target: yes — 25 molecules with ChEMBL bioactivity
  • MANE Select transcript: NM_004755

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:10434
Approved symbolRPS6KA5
Nameribosomal protein S6 kinase A5
Location14q32.11
Locus typegene with protein product
StatusApproved
AliasesMSK1, RLPK
Ensembl geneENSG00000100784
Ensembl biotypeprotein_coding
OMIM603607
Entrez9252

Gene structure

Transcript identifiers

Ensembl transcripts: 17 — 12 protein_coding, 4 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined

ENST00000418736, ENST00000536315, ENST00000554206, ENST00000556178, ENST00000556304, ENST00000556594, ENST00000614987, ENST00000648062, ENST00000886635, ENST00000886636, ENST00000886637, ENST00000886638, ENST00000886639, ENST00000946930, ENST00000946931, ENST00000946932, ENST00000946933

RefSeq mRNA: 14 — MANE Select: NM_004755 NM_001322227, NM_001322228, NM_001322229, NM_001322230, NM_001322231, NM_001322232, NM_001322233, NM_001322234, NM_001322235, NM_001322236, NM_001322237, NM_001322238, NM_004755, NM_182398

CCDS: CCDS45149, CCDS81839, CCDS9893

Canonical transcript exons

ENST00000614987 — 17 exons

ExonStartEnd
ENSE000006596909094743590947550
ENSE000025326159106033291060641
ENSE000034709429087520190875360
ENSE000034993129090614990906299
ENSE000035006979092311390923196
ENSE000035018979094307890943185
ENSE000035250529089048790890678
ENSE000035468919100108891001159
ENSE000035600519089932990899422
ENSE000035641209097830690978524
ENSE000036205879087363290873795
ENSE000036286149090010890900241
ENSE000036779629092020690920309
ENSE000036831669089441390894583
ENSE000036887329090280890902969
ENSE000036889419090061190900736
ENSE000037146529084786190872322

Expression profiles

Bgee: expression breadth ubiquitous, 283 present calls, max score 95.08.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 9.9175 / max 568.3563, expressed in 1275 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter IDTPM avgSamples expressed
1444838.51311225
1444840.8440362
1444820.5340239
1444810.02647

Top tissues by expression

292 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
secondary oocyteCL:000065595.08gold quality
cauda epididymisUBERON:000436094.81gold quality
nippleUBERON:000203093.64gold quality
corpus callosumUBERON:000233693.57gold quality
inferior vagus X ganglionUBERON:000536393.05gold quality
buccal mucosa cellCL:000233692.89gold quality
Brodmann (1909) area 23UBERON:001355492.61gold quality
ponsUBERON:000098892.39gold quality
bronchial epithelial cellCL:000232891.16gold quality
oocyteCL:000002391.00gold quality
skeletal muscle tissue of biceps brachiiUBERON:000450290.79gold quality
mammary ductUBERON:000176590.65gold quality
epithelium of mammary glandUBERON:000324490.62gold quality
skin of hipUBERON:000155490.54gold quality
epithelium of bronchusUBERON:000203190.54gold quality
bronchusUBERON:000218590.39gold quality
body of tongueUBERON:001187690.38gold quality
orbitofrontal cortexUBERON:000416790.36gold quality
superior surface of tongueUBERON:000737190.24gold quality
Brodmann (1909) area 46UBERON:000648390.17gold quality
superior vestibular nucleusUBERON:000722789.77gold quality
cranial nerve IIUBERON:000094189.76gold quality
postcentral gyrusUBERON:000258189.60gold quality
subthalamic nucleusUBERON:000190689.58gold quality
trabecular bone tissueUBERON:000248389.40gold quality
sural nerveUBERON:001548889.32gold quality
jejunal mucosaUBERON:000039989.31gold quality
parietal lobeUBERON:000187289.18gold quality
mucosa of urinary bladderUBERON:000125989.10gold quality
ventral tegmental areaUBERON:000269189.00gold quality

Single-cell (SCXA)

Detected in 11 experiment(s), a significant marker in 6.

ExperimentMarker?Max mean expression
E-MTAB-7407yes593.17
E-MTAB-5061yes272.38
E-MTAB-8142yes39.72
E-CURD-112yes11.66
E-ANND-3yes10.04
E-MTAB-9801yes7.83
E-GEOD-150728no3267.11
E-MTAB-2983no948.18
E-HCAD-6no721.78
E-CURD-46no5.18
E-MTAB-6678no4.10

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): NR3C1

miRNA regulators (miRDB)

195 targeting RPS6KA5, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-340-5P100.0072.504437
HSA-MIR-3163100.0077.238605
HSA-MIR-5692B100.0071.322622
HSA-MIR-5692C100.0071.322622
HSA-MIR-1277-5P100.0073.955056
HSA-MIR-3646100.0073.565283
HSA-MIR-5193100.0067.261744
HSA-MIR-3924100.0072.092394
HSA-MIR-190A-3P100.0080.355520
HSA-MIR-30A-5P100.0076.313233
HSA-MIR-30B-5P100.0076.293248
HSA-MIR-30C-5P100.0076.293248
HSA-MIR-30D-5P100.0076.323233
HSA-MIR-30E-5P100.0076.323242
HSA-MIR-4776-3P100.0068.731340
HSA-MIR-4692100.0067.322066
HSA-MIR-428299.9975.366408
HSA-MIR-548C-3P99.9974.017587
HSA-MIR-27A-3P99.9872.132955
HSA-MIR-27B-3P99.9872.132955
HSA-MIR-998599.9872.112939
HSA-MIR-19A-3P99.9875.332762
HSA-MIR-19B-3P99.9875.442754
HSA-MIR-4482-3P99.9872.503147
HSA-MIR-590-3P99.9674.346478
HSA-MIR-1468-3P99.9672.743797
HSA-MIR-1250-3P99.9670.044038
HSA-MIR-4666A-3P99.9671.713434
HSA-MIR-493-5P99.9672.472382
HSA-MIR-548AJ-3P99.9673.385345

Literature-anchored findings (GeneRIF, showing 40)

  • IL1beta and TNFalpha activation of MSK1 and CREB and cAMP-response element signaling cascades occurs via ERK/p38 MAP kinases and are crucial aspects of the intracellular mechanisms that mediate MUC5AC gene expression (PMID:12690113)
  • acetylation of histones may stimulate transcription by suppressing an inhibitory phosphorylation by MSK1 (PMID:15010469)
  • MSK1 has a role in transforming growth factor-beta-mediated responses through p38alpha and Smad signaling pathways (PMID:15133024)
  • essential role of the C-terminal domain of MSK1 for its constitutive interaction with group V secretory phospholipase A(2), which appears essential to support VEGF-mediated PAF synthesis (PMID:16479592)
  • Plays a positive role in the control of cell proliferation of both HaCaT keratinocytes and the A431 human epidermoid carcinoma line. (PMID:16532028)
  • As MSK1 regulates the production of pro-inflammatory cytokines, it may play a role in the pathogenesis of psoriasis. (PMID:16543895)
  • MSK1 has a role downstream of p38 in the regulation of As2O3 responses (PMID:16762916)
  • Thr700 phosphorylation relieves the inhibition of MSK1 by a C-terminal autoinhibitory helix and helps induce a conformational shift that protects Thr581 from dephosphorylation (PMID:17117922)
  • Dimethylfumarate specifically inhibits MSK1 and 2 activations and subsequently inhibits NF-kappaB-induced gene-transcriptions, which are believed to be important in the pathogenesis of psoriasis (PMID:17495961)
  • the induction of inflammatory genes by farnesol is mediated by the activation of the NF-kappaB pathway and involves MEK1/2-ERK1/2-MSK1-dependent phosphorylation of p65/RelA(Ser(276)) (PMID:18424438)
  • the action of 1,25(OH)(2)D(3) on colon carcinoma cells depends on the dual action of VDR as a transcription factor and a nongenomic activator of RhoA-ROCK and p38MAPK-MSK1. (PMID:19015318)
  • This study provides therefore a direct link between MSK1-mediated phosphorylation of Ser276 p65 of NF-kappaB, allowing its binding to the SCF intronic enhancer, and pathophysiological SCF expression in inflammation. (PMID:19197368)
  • IL-17F may be involved in airway inflammation and remodeling via the induction of IL-11, and RafI-MEK1/2-ERK1/2-MSK1-CREB is identified as a novel signaling pathway. (PMID:19251839)
  • Data reveal that TPA activates transcription of TBX2 through activating MSK1, which leads to an increase in phosphorylated histone H3 and the recruitment of Sp1 to the TBX2 gene. (PMID:19633291)
  • Data provide evidence that p38 Map kinase pathway is activated leading to increased upregulation of mixed lineage kinase 3, MKK3/6, MSK1, and Mapkapk2, upon treatment of BCR/ABL expressing cells with dasatinib. (PMID:19672773)
  • We conclude that RSV induces RelA activation in the innate inflammatory response via a pathway separate from that controlling RelA cytoplasmic release, mediated by ROS signaling to cytoplasmic MSK1 activation and RelA Ser-276 phosphorylation. (PMID:19706715)
  • MSK1 and MSK2 are differentially regulated by CK2 during the UV response and that MSK2 is the major protein kinase responsible for the UV-induced phosphorylation of p65 at Ser(276) that positively regulates NF-kappaB activity in MDA-MB-231 cells (PMID:19933278)
  • The MSK1 can be phosphorylated and activated in cells by both ERK1/2 and p38alpha. (PMID:20044958)
  • CREB controls MSK1-mediated phosphorylation of histone H3 at the c-fos promoter in vitro (PMID:20089855)
  • Bile acid regulates MUC2 transcription in colon cancer cells via positive EGFR/PKC/Ras/ERK/CREB, PI3K/Akt/IkappaB/NF-kappaB and p38/MSK1/CREB pathways and negative JNK/c-Jun/AP-1 pathway. (PMID:20198339)
  • MiR-148a attenuates paclitaxel resistance of hormone-refractory, drug-resistant prostate cancer PC3 cells by regulating MSK1 expression (PMID:20406806)
  • In this study, by applying a novel method, we have identified the phosphorylation sites in human MSK1 mitogen- and stress-activated protein kinase 1, and show that MRK-beta could also activate MSK1 through direct interaction. (PMID:20408143)
  • MSK1- and MSK2-mediated H3K27me3S28 phosphorylation serves as a mechanism to activate a subset of PcG target genes determined by the biological stimuli and thereby modulate the gene expression program determining cell fate. (PMID:20864036)
  • MSK1 is a direct and potent transcriptional activator when targeted to c-fos promotor, and when targeted to alpha-globin promoter induces H3 S28 phosphorylation reactivating expression of this polycomb-silenced gene. (PMID:21282660)
  • MSK1 is an important downstream kinase involved in CS-induced NF-kappaB activation (PMID:22312446)
  • Astaxanthin attenuates the UVB-induced secretion of prostaglandin E2 and interleukin-8 in human keratinocytes by interrupting MSK1 phosphorylation in a ROS depletion-independent manner (PMID:22626465)
  • MSK1 plays an important role for hormone-dependent breast cancer growth (PMID:23604116)
  • Angiopoietin 2-mediated signaling via survivin/ref-1/MSK-1 pathway promotes doxorubicin resistance in HepG2 cells. (PMID:23643942)
  • MSK1 and MSK2 are required for maximal TFF 1 induction. (PMID:23675462)
  • Data suggest that MSK1 and MSK2 are the major CREB kinases in fibroblast-like synoviocytes from rheumatoid arthritis patients stimulated with lysophosphatidic acid and that phosphorylation of CREB1 at Ser-133 plays a significant role in IL-8 production. (PMID:24792438)
  • These results highlight the relevance of MSK1 in the up-regulation of RARbeta by prostaglandin E2. (PMID:24953041)
  • Authors conclude that paramyxoviruses trigger the DNA damage response, a pathway required for MSK1 activation of phospho Ser 276 RelA formation to trigger the IRF7-RIG-I amplification loop necessary for mucosal interferon production. (PMID:25520509)
  • Increased MSK1 activity is critically important for Epstein-Barr virus LMP1-promoted cell proliferation and transformation. (PMID:25958199)
  • Interrupting MSK1 activation is a new target for antioxidants. (PMID:26030901)
  • KSHV activates the MSK1/2-CREB1 pathway during primary infection and that it depends on this pathway for viral lytic replication. I (PMID:26109721)
  • Our findings indicate that MSK1/beta-catenin signaling serves as an escape survival signal upon PI3K inhibition and provides a strong rationale for the combined use of PI3K and MSK1/beta-catenin inhibition to induce lethal growth inhibition in human GBM cells. (PMID:27196759)
  • Results show that MSK1 phosphorylates H3S10 through p38-MAPK pathway in gastric cancer patients. (PMID:27588146)
  • MSK1 was overexpressed in 148 out of 329 colorectal cancer (CRC) patients. CRC patients with high MSK1 expression had shorter overall survival than those with low MSK1, especially among patients with stage III tumors. Overexpression of MSK1 is associated with poor prognosis in CRC and is connected to tumor aggressiveness. (PMID:28314603)
  • High MSK1 is associated with improved breast cancer-specific survival in early stage invasive breast cancer patients, and has additional prognostic value in HER2-negative and non-basal like disease. (PMID:29327245)
  • We show that MSK1 downregulation impairs the differentiation of breast cancer cells, increasing their bone homing and growth capacities. MSK1 controls the expression of genes required for luminal cell differentiation, including the GATA3 and FOXA1 transcription factors, by modulating their promoter chromatin status. (PMID:29358704)

Cross-species orthologs

9 orthologs

OrganismSymbolGene ID
danio_reriorps6ka5ENSDARG00000060551
mus_musculusRps6ka5ENSMUSG00000021180
rattus_norvegicusRps6ka5ENSRNOG00000004362
drosophila_melanogasterJIL-1FBGN0020412
drosophila_melanogasterS6kFBGN0283472
caenorhabditis_elegansrskn-2WBGENE00008311
caenorhabditis_elegansWBGENE00012929
caenorhabditis_elegansWBGENE00017898
caenorhabditis_elegansWBGENE00044281

Paralogs (7): RPS6KA2 (ENSG00000071242), RPS6KA6 (ENSG00000072133), RPS6KB1 (ENSG00000108443), RPS6KA1 (ENSG00000117676), RPS6KA4 (ENSG00000162302), RPS6KB2 (ENSG00000175634), RPS6KA3 (ENSG00000177189)

Protein

Protein identifiers

Ribosomal protein S6 kinase alpha-5O75582 (reviewed: O75582)

Alternative names: 90 kDa ribosomal protein S6 kinase 5, Nuclear mitogen- and stress-activated protein kinase 1, RSK-like protein kinase

All UniProt accessions (5): O75582, A0A3B3ISL8, G3V2D1, G3V4D7, H0YJE1

UniProt curated annotations — full annotation on UniProt →

Function. Serine/threonine-protein kinase that is required for the mitogen or stress-induced phosphorylation of the transcription factors CREB1 and ATF1 and for the regulation of the transcription factors RELA, STAT3 and ETV1/ER81, and that contributes to gene activation by histone phosphorylation and functions in the regulation of inflammatory genes. Phosphorylates CREB1 and ATF1 in response to mitogenic or stress stimuli such as UV-C irradiation, epidermal growth factor (EGF) and anisomycin. Plays an essential role in the control of RELA transcriptional activity in response to TNF and upon glucocorticoid, associates in the cytoplasm with the glucocorticoid receptor NR3C1 and contributes to RELA inhibition and repression of inflammatory gene expression. In skeletal myoblasts is required for phosphorylation of RELA at ‘Ser-276’ during oxidative stress. In erythropoietin-stimulated cells, is necessary for the ‘Ser-727’ phosphorylation of STAT3 and regulation of its transcriptional potential. Phosphorylates ETV1/ER81 at ‘Ser-191’ and ‘Ser-216’, and thereby regulates its ability to stimulate transcription, which may be important during development and breast tumor formation. Directly represses transcription via phosphorylation of ‘Ser-1’ of histone H2A. Phosphorylates ‘Ser-10’ of histone H3 in response to mitogenics, stress stimuli and EGF, which results in the transcriptional activation of several immediate early genes, including proto-oncogenes c-fos/FOS and c-jun/JUN. May also phosphorylate ‘Ser-28’ of histone H3. Mediates the mitogen- and stress-induced phosphorylation of high mobility group protein 1 (HMGN1/HMG14). In lipopolysaccharide-stimulated primary macrophages, acts downstream of the Toll-like receptor TLR4 to limit the production of pro-inflammatory cytokines. Functions probably by inducing transcription of the MAP kinase phosphatase DUSP1 and the anti-inflammatory cytokine interleukin 10 (IL10), via CREB1 and ATF1 transcription factors. Plays a role in neuronal cell death by mediating the downstream effects of excitotoxic injury. Phosphorylates TRIM7 at ‘Ser-107’ in response to growth factor signaling via the MEK/ERK pathway, thereby stimulating its ubiquitin ligase activity.

Subunit / interactions. Forms a complex with either MAPK1/ERK2 or MAPK3/ERK1 in quiescent cells which transiently dissociates following mitogenic stimulation. Also associates with MAPK14/p38-alpha. Activated RPS6KA5 associates with and phosphorylates the NF-kappa-B p65 subunit RELA. Interacts with CREBBP and EP300.

Subcellular location. Nucleus. Cytoplasm.

Tissue specificity. Widely expressed with high levels in heart, brain and placenta. Less abundant in lung, kidney and liver.

Post-translational modifications. Ser-376 and Thr-581 phosphorylation is required for kinase activity. Ser-376 and Ser-212 are autophosphorylated by the C-terminal kinase domain, and their phosphorylation is essential for the catalytic activity of the N-terminal kinase domain. Phosphorylated at Ser-360, Thr-581 and Thr-700 by MAPK1/ERK2, MAPK3/ERK1 and MAPK14/p38-alpha. Autophosphorylated at Ser-750, Ser-752 and Ser-758 by the N-terminal kinase domain. Ubiquitinated.

Activity regulation. Activated by phosphorylation at Ser-360, Thr-581 and Thr-700 by MAPK1/ERK2, MAPK3/ERK1 and MAPK14/p38-alpha, and by further autophosphorylation of Ser-212, Ser-376 and Ser-381 by the activated C-terminal kinase domain. The active N-terminal kinase domain finally phosphorylates downstream substrates, as well as Ser-750, Ser-752 and Ser-758 in its own C-terminal region.

Miscellaneous. Enzyme activity requires the presence of both kinase domains.

Similarity. Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily.

Isoforms (3)

UniProt IDNamesCanonical?
O75582-11yes
O75582-22
O75582-33

RefSeq proteins (14): NP_001309156, NP_001309157, NP_001309158, NP_001309159, NP_001309160, NP_001309161, NP_001309162, NP_001309163, NP_001309164, NP_001309165, NP_001309166, NP_001309167, NP_004746, NP_872198 (=MANE)

Domains & families (InterPro)

IDNameType
IPR000719Prot_kinase_domDomain
IPR000961AGC-kinase_CDomain
IPR008271Ser/Thr_kinase_ASActive_site
IPR011009Kinase-like_dom_sfHomologous_superfamily
IPR016239Ribosomal_S6_kinase_IIFamily
IPR017441Protein_kinase_ATP_BSBinding_site
IPR017892Pkinase_CDomain

Pfam: PF00069, PF00433

Catalyzed reactions (Rhea), 2 shown:

  • L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+) (RHEA:17989)
  • L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+) (RHEA:46608)

UniProt features (105 total): helix 28, strand 22, modified residue 14, turn 8, mutagenesis site 7, binding site 4, sequence variant 4, sequence conflict 4, domain 3, splice variant 3, compositionally biased region 3, active site 2, region of interest 2, chain 1

Structure

Experimental structures (PDB)

8 structures.

PDBMethodResolution (Å)
1VZOX-RAY DIFFRACTION1.8
3KN6X-RAY DIFFRACTION2
3KN5X-RAY DIFFRACTION2.4
7UP6X-RAY DIFFRACTION2.6
7UP5X-RAY DIFFRACTION2.8
7UP7X-RAY DIFFRACTION2.8
7UP8X-RAY DIFFRACTION2.9
7UP4X-RAY DIFFRACTION3

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-O75582-F170.800.26

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Catalytic / active sites (2): 544 (proton acceptor); 177 (proton acceptor)

Ligand- & substrate-binding residues (4): 55–63; 81; 432–440; 455

Post-translational modifications (14): 212, 360, 376, 381, 581, 647, 657, 691, 695, 700, 750, 752, 758, 798

Mutagenesis-validated functional residues (7):

PositionPhenotype
195loss of kinase activity.
212inactivates the n-terminal kinase domain.
360decreases kinase activity by 60% in response to pma and uv-c.
376loss of kinase activity, and decreases the phosphorylation of s-360 and t-581.
565loss of kinase activity.
581loss of kinase activity, and blocks phosphorylation of s-212; s-376 and s-381 in response to pma and uv-c.
700strongly reduces phosphorylation of t-581 in response to pma and uv-c.

Function

Pathways and Gene Ontology

Reactome pathways

38 pathways

IDPathway
R-HSA-198753ERK/MAPK targets
R-HSA-199920CREB phosphorylation
R-HSA-375165NCAM signaling for neurite out-growth
R-HSA-437239Recycling pathway of L1
R-HSA-5621575CD209 (DC-SIGN) signaling
R-HSA-1266738Developmental Biology
R-HSA-1280215Cytokine Signaling in Immune system
R-HSA-162582Signal Transduction
R-HSA-166016Toll Like Receptor 4 (TLR4) Cascade
R-HSA-166058MyD88:MAL(TIRAP) cascade initiated on plasma membrane
R-HSA-166166MyD88-independent TLR4 cascade
R-HSA-166520Signaling by NTRKs
R-HSA-168138Toll Like Receptor 9 (TLR9) Cascade
R-HSA-168142Toll Like Receptor 10 (TLR10) Cascade
R-HSA-168164Toll Like Receptor 3 (TLR3) Cascade
R-HSA-168176Toll Like Receptor 5 (TLR5) Cascade
R-HSA-168179Toll Like Receptor TLR1:TLR2 Cascade
R-HSA-168181Toll Like Receptor 7/8 (TLR7/8) Cascade
R-HSA-168188Toll Like Receptor TLR6:TLR2 Cascade
R-HSA-168249Innate Immune System
R-HSA-168256Immune System
R-HSA-168898Toll-like Receptor Cascades
R-HSA-181438Toll Like Receptor 2 (TLR2) Cascade
R-HSA-187037Signaling by NTRK1 (TRKA)
R-HSA-198725Nuclear Events (kinase and transcription factor activation)
R-HSA-373760L1CAM interactions
R-HSA-422475Axon guidance
R-HSA-448424Interleukin-17 signaling
R-HSA-449147Signaling by Interleukins
R-HSA-450282MAPK targets/ Nuclear events mediated by MAP kinases

MSigDB gene sets: 459 (showing top): E2F_Q4, MYAATNNNNNNNGGC_UNKNOWN, E2F_Q4_01, REACTOME_INNATE_IMMUNE_SYSTEM, TGCGCANK_UNKNOWN, E2F4DP1_01, MORF_MSH3, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOBP_INFLAMMATORY_RESPONSE, GOBP_RESPONSE_TO_PEPTIDE, KEGG_MAPK_SIGNALING_PATHWAY, GOBP_POSITIVE_REGULATION_OF_CREB_TRANSCRIPTION_FACTOR_ACTIVITY, MORF_BRCA1, GAUSSMANN_MLL_AF4_FUSION_TARGETS_C_UP, REACTOME_NCAM_SIGNALING_FOR_NEURITE_OUT_GROWTH

GO Biological Process (15): negative regulation of cytokine production (GO:0001818), regulation of DNA-templated transcription (GO:0006355), protein phosphorylation (GO:0006468), inflammatory response (GO:0006954), axon guidance (GO:0007411), obsolete positive regulation of CREB transcription factor activity (GO:0032793), intracellular signal transduction (GO:0035556), TORC1 signaling (GO:0038202), post-translational protein modification (GO:0043687), negative regulation of DNA-templated transcription (GO:0045892), positive regulation of transcription by RNA polymerase II (GO:0045944), obsolete positive regulation of NF-kappaB transcription factor activity (GO:0051092), interleukin-1-mediated signaling pathway (GO:0070498), regulation of postsynapse organization (GO:0099175), chromatin remodeling (GO:0006338)

GO Molecular Function (14): magnesium ion binding (GO:0000287), protein serine/threonine kinase activity (GO:0004674), protein tyrosine kinase activity (GO:0004713), ATP binding (GO:0005524), histone H3S10 kinase activity (GO:0035175), histone H3S28 kinase activity (GO:0044022), histone H2AS1 kinase activity (GO:0044024), protein serine kinase activity (GO:0106310), nucleotide binding (GO:0000166), protein kinase activity (GO:0004672), protein binding (GO:0005515), kinase activity (GO:0016301), transferase activity (GO:0016740), metal ion binding (GO:0046872)

GO Cellular Component (3): nucleus (GO:0005634), nucleoplasm (GO:0005654), cytoplasm (GO:0005737)

Reactome top-level categories

Rollup of top-12 pathways:

CategoryPathways
Toll-like Receptor Cascades6
Nuclear Events (kinase and transcription factor activation)2
MAPK targets/ Nuclear events mediated by MAP kinases2
Immune System2
Toll Like Receptor 4 (TLR4) Cascade2
Toll Like Receptor 2 (TLR2) Cascade2
Axon guidance1
L1CAM interactions1
C-type lectin receptors (CLRs)1
Toll Like Receptor TLR1:TLR2 Cascade1
Toll Like Receptor TLR6:TLR2 Cascade1
Signaling by Receptor Tyrosine Kinases1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
protein kinase activity3
protein serine/threonine kinase activity3
DNA-templated transcription2
protein modification process2
intracellular anatomical structure2
histone H3 kinase activity2
cellular anatomical structure2
cytokine production1
regulation of cytokine production1
negative regulation of gene expression1
negative regulation of multicellular organismal process1
regulation of gene expression1
regulation of RNA biosynthetic process1
phosphorylation1
defense response1
axonogenesis1
neuron projection guidance1
signal transduction1
TOR signaling1
regulation of DNA-templated transcription1
negative regulation of RNA biosynthetic process1
regulation of transcription by RNA polymerase II1
transcription by RNA polymerase II1
positive regulation of DNA-templated transcription1
cytokine-mediated signaling pathway1
cellular response to interleukin-11
regulation of synapse organization1
postsynapse organization1
chromatin organization1
metal ion binding1
adenyl ribonucleotide binding1
purine ribonucleoside triphosphate binding1
histone H2A kinase activity1
nucleoside phosphate binding1
heterocyclic compound binding1
kinase activity1
phosphotransferase activity, alcohol group as acceptor1
catalytic activity, acting on a protein1
binding1
transferase activity, transferring phosphorus-containing groups1

Protein interactions and networks

STRING

1128 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
RPS6KA5ATF1P18846783
RPS6KA5CREB1P16220702
RPS6KA5EP300Q09472602
RPS6KA5YWHAZP29213600
RPS6KA5H3C1P02295586
RPS6KA5H3-7Q5TEC6586
RPS6KA5H3C14Q71DI3585
RPS6KA5H3-5Q6NXT2585
RPS6KA5H3-4Q16695585
RPS6KA5H3-3AP06351584
RPS6KA5SMARCA4P51532517
RPS6KA5EZH2Q15910512
RPS6KA5PGRP06401500
RPS6KA5CD58P19256500
RPS6KA5JUNP05412481

IntAct

75 interactions, top by confidence:

ABTypeScore
MAPK14OBSL1psi-mi:“MI:0914”(association)0.790
RPS6KA5CSNK2Bpsi-mi:“MI:0915”(physical association)0.660
CSNK2BRPS6KA5psi-mi:“MI:0914”(association)0.660
MAPK14RPS6KA5psi-mi:“MI:0914”(association)0.660
CHCHD4SSNA1psi-mi:“MI:0914”(association)0.640
MAP3K20RPS6KA5psi-mi:“MI:0915”(physical association)0.600
RPS6KA5MAP3K20psi-mi:“MI:0915”(physical association)0.600
RPS6KA5MAP3K20psi-mi:“MI:0403”(colocalization)0.600
RPS6KA5CTNNA3psi-mi:“MI:0915”(physical association)0.560
RPS6KA5RELApsi-mi:“MI:2364”(proximity)0.540
RELARPS6KA5psi-mi:“MI:0915”(physical association)0.540
CLEC4ASEMA7Apsi-mi:“MI:0914”(association)0.530
FAM174ABLTP3Bpsi-mi:“MI:0914”(association)0.530
LAMP3METTL15psi-mi:“MI:0914”(association)0.530
KDM3ARPS6KA5psi-mi:“MI:0915”(physical association)0.520
RPS6KA5psi-mi:“MI:0217”(phosphorylation reaction)0.440
RPS6KA5MAPTpsi-mi:“MI:0217”(phosphorylation reaction)0.440
RPS6KA5PKMpsi-mi:“MI:0217”(phosphorylation reaction)0.440
RPS6KA5HSP90AA4Ppsi-mi:“MI:0915”(physical association)0.400
RPS6KA5HSP90AB1psi-mi:“MI:0915”(physical association)0.400
RPS6KA5NR3C1psi-mi:“MI:0915”(physical association)0.400
RPA1RPS6KA5psi-mi:“MI:0915”(physical association)0.370
RPS6KA5IL17RBpsi-mi:“MI:0915”(physical association)0.370
RPS6KA5ALG8psi-mi:“MI:0915”(physical association)0.370
RPS6KA5GPRASP2psi-mi:“MI:0915”(physical association)0.370
FN1RPS6KA5psi-mi:“MI:0915”(physical association)0.370

BioGRID (145): RPS6KA5 (Affinity Capture-MS), HIST1H2BB (Biochemical Activity), MBP (Biochemical Activity), HIST1H1A (Biochemical Activity), RPS6KA5 (Co-localization), RELA (Co-localization), EGF (Co-localization), ATF2 (Co-localization), ATF1 (Biochemical Activity), MAPK14 (Reconstituted Complex), RPS6KA5 (Affinity Capture-MS), HSP90AA4P (Affinity Capture-MS), RPS6KA5 (Affinity Capture-RNA), RPS6KA5 (Synthetic Lethality), MAPK1 (Phenotypic Enhancement)

ESM2 similar proteins: A2VDV2, A8XJL7, O13310, O75582, O97627, P00518, P07934, P13286, P18652, P18653, P18654, P21146, P23443, P26817, P26818, P26819, P35626, P51812, P54645, P67998, P67999, Q09639, Q12706, Q15208, Q21734, Q2L6W9, Q2LZZ7, Q39030, Q3UYH7, Q54IH8, Q5F3L1, Q5R4K3, Q5R8M1, Q64682, Q6PFQ0, Q6TGC6, Q6TJY3, Q7TPS0, Q7TSE6, Q8BGW6

Diamond homologs: A1Z9X0, A2YBX5, F1M7Y5, F4HPN2, F4HYG2, F4I4F2, F4J6F6, O13310, O15021, O42626, O48963, O60307, O64682, O75582, O75676, P09217, P10666, P15792, P18652, P18654, P25341, P28178, P31034, P34099, P34102, P34103, P38938, P41743, P42818, P47197, P51812, P51817, P53739, P53894, P93025, Q02956, Q05513, Q05999, Q09831, Q0DCT8

SIGNOR signaling

62 interactions.

AEffectBMechanism
RPS6KA5up-regulatesSTAT3phosphorylation
MAPK1up-regulatesRPS6KA5phosphorylation
RPS6KA5“down-regulates activity”H3-3Aphosphorylation
RPS6KA5“down-regulates activity”H3C1phosphorylation
RPS6KA5up-regulatesH2AC11phosphorylation
MAPK14“up-regulates activity”RPS6KA5phosphorylation
MAPK3up-regulatesRPS6KA5phosphorylation
RPS6KA5“up-regulates activity”RPS6KA5phosphorylation
RPS6KA5unknownRPS6KA5phosphorylation
RPS6KA5“up-regulates activity”H3-3Aphosphorylation
RPS6KA5up-regulatesNfKb-p65/p50phosphorylation
RPS6KA5“up-regulates activity”PLA2G4Aphosphorylation
RPS6KA5unknownNR4A1phosphorylation
ERK1/2up-regulatesRPS6KA5phosphorylation
ERK1/2“up-regulates activity”RPS6KA5phosphorylation

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 72 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

Reactome pathways:

PathwayPartnersFoldFDR
Interleukin-17 signaling525.9×3e-04
Toll Like Receptor 10 (TLR10) Cascade522.0×3e-04
Toll Like Receptor 5 (TLR5) Cascade522.0×3e-04
MyD88 cascade initiated on plasma membrane520.8×3e-04
Toll Like Receptor 3 (TLR3) Cascade519.8×3e-04
TRIF (TICAM1)-mediated TLR4 signaling519.4×3e-04
TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation519.4×3e-04
MyD88 dependent cascade initiated on endosome519.4×3e-04

Disease & clinical

Clinical variants and AI predictions

ClinVar

94 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance76
Likely benign1
Benign0

Top pathogenic / likely-pathogenic (0)

SpliceAI

4668 predictions. Top by Δscore:

VariantEffectΔscore
14:90875195:TCTTA:Tdonor_loss1.0000
14:90875196:CTTAC:Cdonor_loss1.0000
14:90875197:TTA:Tdonor_loss1.0000
14:90875198:TACC:Tdonor_loss1.0000
14:90875361:C:CCacceptor_gain1.0000
14:90875365:C:CTacceptor_gain1.0000
14:90890482:CTCA:Cdonor_loss1.0000
14:90890483:TCAC:Tdonor_loss1.0000
14:90890484:CAC:Cdonor_loss1.0000
14:90890485:A:ACdonor_gain1.0000
14:90890485:A:Tdonor_loss1.0000
14:90890486:C:CTdonor_gain1.0000
14:90890486:CCAAA:Cdonor_gain1.0000
14:90890614:CG:Cacceptor_gain1.0000
14:90890615:G:Cacceptor_gain1.0000
14:90890674:AAATT:Aacceptor_gain1.0000
14:90890675:AATT:Aacceptor_gain1.0000
14:90890676:ATTC:Aacceptor_loss1.0000
14:90890677:TT:Tacceptor_gain1.0000
14:90890677:TTC:Tacceptor_loss1.0000
14:90890678:TC:Tacceptor_loss1.0000
14:90890679:C:CAacceptor_loss1.0000
14:90890679:C:CCacceptor_gain1.0000
14:90890680:T:Aacceptor_loss1.0000
14:90894407:TTATA:Tdonor_loss1.0000
14:90894408:TATA:Tdonor_loss1.0000
14:90894409:ATAC:Adonor_loss1.0000
14:90894410:TACCT:Tdonor_loss1.0000
14:90894411:A:ATdonor_loss1.0000
14:90894462:A:ACdonor_gain1.0000

AlphaMissense

5334 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
14:90872251:T:AR744S1.000
14:90872251:T:GR744S1.000
14:90872252:C:GR744T1.000
14:90872254:T:AR743S1.000
14:90872254:T:GR743S1.000
14:90872255:C:GR743T1.000
14:90873736:A:GW686R1.000
14:90873736:A:TW686R1.000
14:90873767:C:AR675S1.000
14:90873767:C:GR675S1.000
14:90873768:C:AR675M1.000
14:90873768:C:GR675T1.000
14:90873789:A:GL668P1.000
14:90873792:A:GL667P1.000
14:90875240:A:GW653R1.000
14:90875240:A:TW653R1.000
14:90890497:C:TG609D1.000
14:90890498:C:GG609R1.000
14:90890505:C:AW606C1.000
14:90890505:C:GW606C1.000
14:90890507:A:GW606R1.000
14:90890507:A:TW606R1.000
14:90890623:C:TG567E1.000
14:90890628:A:CD565E1.000
14:90890628:A:TD565E1.000
14:90890629:T:AD565V1.000
14:90890629:T:CD565G1.000
14:90890629:T:GD565A1.000
14:90890630:C:GD565H1.000
14:90890676:A:CN549K1.000

dbSNP variants (sampled 300 via entrez): RS1000001221 (14:91015340 T>C), RS1000005254 (14:91037749 G>C), RS1000009092 (14:90956169 T>C,G), RS1000037221 (14:91057365 T>A), RS1000066331 (14:90907742 G>A,C), RS1000074301 (14:91036355 C>A,G,T), RS1000076188 (14:91029472 T>C), RS1000091206 (14:91000759 G>A), RS1000105359 (14:90903749 C>T), RS1000115997 (14:90936617 A>C), RS1000122676 (14:91012101 T>C), RS1000161743 (14:90879228 T>C,G), RS1000169209 (14:91004749 C>T), RS1000194933 (14:90877208 T>C), RS1000217309 (14:91021427 G>A,C)

Disease associations

OMIM: gene MIM:603607 | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

23 associations (top):

StudyTraitp-value
GCST004097_2Response to platinum-based neoadjuvant chemotherapy in cervical cancer7.000000e-06
GCST005795_36Femoral neck bone mineral density4.000000e-08
GCST005796_24Lumbar spine bone mineral density6.000000e-12
GCST005956_47Waist-to-hip ratio adjusted for BMI7.000000e-07
GCST005962_28Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)7.000000e-07
GCST006423_12Fracture2.000000e-17
GCST006979_1012Heel bone mineral density2.000000e-36
GCST007691_32Femoral neck bone mineral density2.000000e-15
GCST008522_92Bitter alcoholic beverage consumption8.000000e-06
GCST009597_213Multiple sclerosis8.000000e-06
GCST010916_23Proportion of activated microglia (inferior temporal cortex)7.000000e-06
GCST010988_543Adult body size8.000000e-10
GCST90013406_110Liver enzyme levels (alkaline phosphatase)3.000000e-12
GCST90020024_474A body shape index5.000000e-08
GCST90020024_773A body shape index3.000000e-10
GCST90020025_430Waist-to-hip ratio adjusted for BMI1.000000e-14
GCST90020025_431Waist-to-hip ratio adjusted for BMI2.000000e-13
GCST90020026_239Hip index8.000000e-09
GCST90020026_240Hip index2.000000e-10
GCST90020027_683Waist-hip index3.000000e-15
GCST90020027_684Waist-hip index1.000000e-13
GCST90020028_1871Hip circumference adjusted for BMI2.000000e-09
GCST90020029_400Waist circumference adjusted for body mass index4.000000e-09

EFO canonical traits (11, from GWAS)

EFO IDTrait name
EFO:0007943response to platinum-based neoadjuvant chemotherapy
EFO:0007785femoral neck bone mineral density
EFO:0007701spine bone mineral density
EFO:0007788BMI-adjusted waist-hip ratio
EFO:0008007age at assessment
EFO:0008343sex interaction measurement
EFO:0009270heel bone mineral density
EFO:0010092bitter alcoholic beverage consumption measurement
EFO:0004533alkaline phosphatase measurement
EFO:0007789BMI-adjusted waist circumference
EFO:0008039BMI-adjusted hip circumference

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (2): CHEMBL3832633 (PROTEIN FAMILY), CHEMBL4237 (SINGLE PROTEIN)

Molecules with ChEMBL bioactivity

25 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 170,788 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL1287853FEDRATINIB43,554
CHEMBL1789941RUXOLITINIB411,547
CHEMBL502835NINTEDANIB48,545
CHEMBL535SUNITINIB479,020
CHEMBL608533MIDOSTAURIN47,259
CHEMBL223360LINIFANIB33,925
CHEMBL274654ORANTINIB33,596
CHEMBL300138ENZASTAURIN33,209
CHEMBL38380FASUDIL311,953
CHEMBL428690ALVOCIDIB327,781
CHEMBL522892DOVITINIB34,944
CHEMBL603469LESTAURTINIB3
CHEMBL91829RUBOXISTAURIN377
CHEMBL1721885SU-0148132363
CHEMBL1980297ILORASERTIB2581
CHEMBL475251R-4062762
CHEMBL495727AT-928321,376
CHEMBL513909BI-25362895
CHEMBL3544960AT-131481779
CHEMBL1908397KW-24491622
CHEMBL2140408AMG-9001
CHEMBL296468BMS-3870321
CHEMBL3128043PF-037583091
CHEMBL494089GSK-6906931
CHEMBL574738AST-4871

PharmGKB: 1 entry (VIP=true, CPIC=false)

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: enzyme — MSK subfamily

Most potent curated ligand interactions (3 total), top 3:

LigandActionAffinityParameter
SB-747651AInhibition9.3pIC50
compound 24 [PMID: 15955699]Inhibition8.85pIC50
compound 23 [PMID: 35816678]Inhibition6.84pIC50

Binding affinities (BindingDB)

23 measured of 24 human assays (24 total across all organisms); most potent 23 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValue
StaurosporineKD1.7 nM
4-[2-(4-amino-1,2,5-oxadiazol-3-yl)-7-(3-aminopropoxy)-1-ethyl-1H-imidazo[4,5-c]pyridin-4-yl]-2-methylbut-3-yn-2-olIC506 nM
Pyrrolopyridine, 16IC508.5 nM
JMC502647 Compound 8IC5010 nM
4-[1-ethyl-7-(piperidin-4-ylmethoxy)-1H-imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amineIC5056 nM
Pyrrolopyridine, 9IC5066 nM
4-[1-ethyl-7-(piperidin-4-yloxy)-1H-imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amineIC5079 nM
4-[7-(3-aminopropoxy)-1-ethyl-4-(furan-3-yl)-1H-imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amineIC5079 nM
2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethyl-N-[2-(methylamino)ethyl]-1H-imidazo[4,5-c]pyridine-7-carboxamideIC50126 nM
Pyrrolopyridine, 23IC50126 nM
PKC-412KD190 nM
4-{1-ethyl-7-[(piperidin-4-ylamino)methyl]-1H-imidazo[4,5-c]pyridin-2-yl}-1,2,5-oxadiazol-3-amineIC50200 nM
4-(7-{[(3R)-3-aminopyrrolidin-1-yl]carbonyl}-1-ethyl-1H-imidazo[4,5-c]pyridin-2-yl)-1,2,5-oxadiazol-3-amineIC50331 nM
4-[7-(3-aminopropoxy)-1-ethyl-4-phenyl-1H-imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amineIC50331 nM
1-[4-(3-amino-1H-indazol-4-yl)phenyl]-3-(2-fluoro-5-methyl-phenyl)ureaKD450 nM
4-[1-ethyl-7-(piperazin-1-ylcarbonyl)-1H-imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amineIC50501 nM
(3Z)-4-amino-5-fluoro-3-[5-(4-methylpiperazino)-1,3-dihydrobenzimidazol-2-ylidene]carbostyrilKD520 nM
2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethyl-N-(piperidin-4-yl)-1H-imidazo[4,5-c]pyridine-7-carboxamideIC50562 nM
2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethyl-N-(piperidin-3-yl)-1H-imidazo[4,5-c]pyridine-7-carboxamideIC50631 nM
(18S)-18-[(dimethylamino)methyl]-17-oxa-4,14,21-triazahexacyclo[19.6.1.1^{7,14}.0^{2,6}.0^{8,13}.0^{22,27}]nonacosa-1(28),2(6),7(29),8(13),9,11,22(27),23,25-nonaene-3,5-dioneKD700 nM
1-[4-[(4-ethyl-1-piperazinyl)methyl]-3-(trifluoromethyl)phenyl]-3-[4-[[6-(methylamino)-4-pyrimidinyl]oxy]phenyl]ureaKD1400 nM
5-[(Z)-(5-fluoranyl-2-oxidanylidene-1H-indol-3-ylidene)methyl]-2,4-dimethyl-N-[(2S)-3-morpholin-4-yl-2-oxidanyl-propyl]-1H-pyrrole-3-carboxamideKD2600 nM
N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carboxamideKD3500 nM

ChEMBL bioactivities

332 potent at pChembl≥5 of 345 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
9.60IC500.2512nMCHEMBL5177437
9.37IC500.426nMSTAUROSPORINE
9.30IC500.5nMCHEMBL188434
9.26IC500.553nMSTAUROSPORINE
9.20IC500.631nMCHEMBL5178687
9.10Ki0.7943nMCHEMBL1970903
9.00IC501nMCHEMBL521823
8.90Ki1.259nMCHEMBL1991063
8.85IC501.4nMCHEMBL415770
8.85IC501.4nMSTAUROSPORINE
8.85IC501.42nMSTAUROSPORINE
8.82IC501.5nMCHEMBL185962
8.74IC501.8nMCHEMBL185962
8.70IC502nMCHEMBL188806
8.60IC502.5nMCHEMBL186317
8.52IC503nMCHEMBL189657
8.52IC503nMCHEMBL189231
8.52IC503nMCHEMBL426440
8.52IC503nMCHEMBL523695
8.42IC503.79nMCHEMBL3909070
8.40IC504nMCHEMBL2347053
8.40IC504nMCHEMBL187340
8.40IC504nMCHEMBL188268
8.30IC505.012nMCHEMBL5178687
8.30Ki5.012nMCHEMBL1974870
8.30Ki5.012nMCHEMBL1979883
8.28Kd5.3nMCHEMBL2023845
8.22IC506nMCHEMBL188433
8.20IC506.31nMCHEMBL4792347
8.15IC507nMCHEMBL360219
8.12IC507.58nMCHEMBL3927587
8.10IC508nMCHEMBL364413
8.10IC508nMCHEMBL188434
8.10IC507.943nMCHEMBL5278787
8.10IC508nMBISINDOLYLMALEIMIDE IX
8.10Ki7.943nMCHEMBL1990254
8.05IC509nMCHEMBL188620
8.05IC509nMCHEMBL365832
8.00IC5010nMCHEMBL5190298
7.99IC5010.3nMCHEMBL3924878
7.96IC5011nMCHEMBL188433
7.96IC5011nMCHEMBL493067
7.92Kd12nMCHEMBL2023841
7.92IC5012nMAT-13148
7.90IC5012.7nMCHEMBL3911801
7.90IC5012.59nMCHEMBL5184056
7.89IC5013nMCHEMBL188457
7.89IC5013nMCHEMBL363258
7.89IC5013nMCHEMBL494662
7.85IC5014nMCHEMBL1956071

PubChem BioAssay actives

206 with measured affinity, of 2474 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
(E)-2-cyano-3-[3-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)phenyl]prop-2-enamide1893503: Inhibition of full-length N-terminal His-TEV-tagged inactive form of MSK1 (2 to 802 residues) (unknown origin) expressed in HEK293 cells using FAM-PSKPAATRKRRWSAPESR-NH2 as substrate preincubated for 1 hr followed by activation with ERK2 and substrate addition measured after 2 hrs by microfluidic chip based electrophoresisic500.0003uM
(2S,3R,4R,6R)-3-methoxy-2-methyl-4-(methylamino)-29-oxa-1,7,17-triazaoctacyclo[12.12.2.12,6.07,28.08,13.015,19.020,27.021,26]nonacosa-8,10,12,14,19,21,23,25,27-nonaen-16-one1715258: Inhibition of human MSK1 using GRPRTSSFAEG as substrate by [gamma-33P]-ATP assayic500.0004uM
4-[1-ethyl-7-[(piperidin-4-ylamino)methyl]imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amine1933325: Inhibition of MSK-1 (unknown origin)ic500.0005uM
(E)-2-cyano-N-(1-hydroxy-2-methylpropan-2-yl)-3-[3-(3,4,5-trimethoxyphenyl)-1H-indazol-5-yl]prop-2-enamide1893515: Inhibition of N-terminal His-Smt-tagged MSK1 C-terminal kinase domain (414 to 738 residues) (unknown origin) expressed in Escherichia coli BL21 (DE3) using FAM-PSKPAATRKRRWSAPESR-NH2 as substrate preincubated for 1 hr followed by substrate addition and measured after 70 mins by ADP-Glo kinase assayic500.0006uM
4-[1-ethyl-7-(piperidin-4-ylmethoxy)imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amine1798494: In Vitro Kinase Inhibition Assay from Article 10.1021/jm8004527: “Identification of 4-(2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethyl-7-{[(3S)-3-piperidinylmethyl]oxy}-1H-imidazo[4,5-c]pyridin-4-yl)-2-methyl-3-butyn-2-ol (GSK690693), a novel inhibitor of AKT kinase.”ic500.0010uM
4-[1-ethyl-7-(piperazin-1-ylmethyl)imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amine240472: Inhibitory concentration against MSK-1ic500.0014uM
4-(1-cyclopropylimidazo[4,5-c]pyridin-2-yl)-1,2,5-oxadiazol-3-amine240472: Inhibitory concentration against MSK-1ic500.0015uM
4-(1-piperidin-3-ylimidazo[4,5-c]pyridin-2-yl)-1,2,5-oxadiazol-3-amine240472: Inhibitory concentration against MSK-1ic500.0020uM
4-[1-[3-(aminomethyl)phenyl]imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amine240472: Inhibitory concentration against MSK-1ic500.0025uM
4-(1-ethylimidazo[4,5-c]pyridin-2-yl)-1,2,5-oxadiazol-3-amine1933325: Inhibition of MSK-1 (unknown origin)ic500.0030uM
[2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethylimidazo[4,5-c]pyridin-7-yl]-[(3R)-3-aminopyrrolidin-1-yl]methanone1798494: In Vitro Kinase Inhibition Assay from Article 10.1021/jm8004527: “Identification of 4-(2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethyl-7-{[(3S)-3-piperidinylmethyl]oxy}-1H-imidazo[4,5-c]pyridin-4-yl)-2-methyl-3-butyn-2-ol (GSK690693), a novel inhibitor of AKT kinase.”ic500.0030uM
4-(1-cyclohexylimidazo[4,5-c]pyridin-2-yl)-1,2,5-oxadiazol-3-amine240472: Inhibitory concentration against MSK-1ic500.0030uM
4-[7-[(4-aminopiperidin-1-yl)methyl]-1-ethylimidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amine240472: Inhibitory concentration against MSK-1ic500.0030uM
4-(4-chloro-1-ethylimidazo[4,5-c]pyridin-2-yl)-1,2,5-oxadiazol-3-amine240472: Inhibitory concentration against MSK-1ic500.0040uM
4-[1-[4-(aminomethyl)phenyl]imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amine240472: Inhibitory concentration against MSK-1ic500.0040uM
(3Z)-3-[[5-(2-nitrophenyl)-1H-pyrazol-4-yl]methylidene]-1H-indol-2-one739297: Inhibition of MSK1 (unknown origin) after 10 mins by mobility shift assayic500.0040uM
3-[[(2R)-6-amino-1-[[N-[(4R)-5-amino-4-[[(2R)-5-carbamimidamido-2-[[(2R)-5-carbamimidamido-2-[[(2R)-5-carbamimidamido-2-[[(2R)-5-carbamimidamido-2-[[(2R)-5-carbamimidamido-2-[6-[2-(isoquinolin-5-ylsulfonylamino)ethylamino]hexanoylamino]pentanoyl]amino]pentanoyl]amino]pentanoyl]amino]pentanoyl]amino]pentanoyl]amino]-5-oxopentyl]carbamimidoyl]amino]-1-oxohexan-2-yl]carbamoyl]-4-[3,6-bis(dimethylamino)-3H-xanthen-9-yl]benzoic acid659377: Binding affinity to His6-tagged recombinant human MSK1 by fluorescence anisotropy assaykd0.0053uM
4-(1-phenylimidazo[4,5-c]pyridin-2-yl)-1,2,5-oxadiazol-3-amine240472: Inhibitory concentration against MSK-1ic500.0060uM
N-cyclopropyl-4-methyl-3-[3-[2-[2-[2-(methylamino)ethoxy]phenyl]propan-2-ylamino]-2-oxopyrazin-1-yl]benzamide1721565: Inhibition of human MSK1ic500.0063uM
4-[1-ethyl-7-(piperidin-1-ylmethyl)imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amine240472: Inhibitory concentration against MSK-1ic500.0070uM
N-[(1S)-2-amino-1-phenylethyl]-4-pyridin-4-ylbenzamide1948867: Inhibition of RPS6KA5 (unknown origin)ic500.0079uM
4-(1-ethyl-4-methylimidazo[4,5-c]pyridin-2-yl)-1,2,5-oxadiazol-3-amine240472: Inhibitory concentration against MSK-1ic500.0080uM
3-[3-[4-(1-methylindol-3-yl)-2,5-dioxopyrrol-3-yl]indol-1-yl]propyl carbamimidothioate512454: Inhibition of His-tagged human MSK1 expressed in Sf9 cellsic500.0080uM
4-(7-bromo-1-ethylimidazo[4,5-c]pyridin-2-yl)-1,2,5-oxadiazol-3-amine240472: Inhibitory concentration against MSK-1ic500.0090uM
4-[1-(1-aminopropan-2-yl)imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amine240472: Inhibitory concentration against MSK-1ic500.0090uM
5-(4-chloropyrimidin-2-yl)pyrrolo[3,2-d]pyrimidine1893503: Inhibition of full-length N-terminal His-TEV-tagged inactive form of MSK1 (2 to 802 residues) (unknown origin) expressed in HEK293 cells using FAM-PSKPAATRKRRWSAPESR-NH2 as substrate preincubated for 1 hr followed by activation with ERK2 and substrate addition measured after 2 hrs by microfluidic chip based electrophoresisic500.0100uM
2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethyl-N-piperidin-3-ylimidazo[4,5-c]pyridine-7-carboxamide1798494: In Vitro Kinase Inhibition Assay from Article 10.1021/jm8004527: “Identification of 4-(2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethyl-7-{[(3S)-3-piperidinylmethyl]oxy}-1H-imidazo[4,5-c]pyridin-4-yl)-2-methyl-3-butyn-2-ol (GSK690693), a novel inhibitor of AKT kinase.”ic500.0110uM
N-[(2R)-1-[[6-[[(2R)-1-[[(2R)-1-[[(2R)-1-[[(2R)-1-[[(2R)-1-[[(2R)-1-[[(2R)-1-amino-6-[[2-[24-(hydroxy-methylidene-oxo-lambda6-sulfanyl)-5,5,27,27-tetramethyl-16-oxa-12-aza-20-azoniaheptacyclo[15.11.0.03,15.04,12.06,11.020,28.021,26]octacosa-1,3,6(11),7,9,20(28),21(26),22,24-nonaen-8-yl]acetyl]amino]-1-oxohexan-2-yl]amino]-5-carbamimidamido-1-oxopentan-2-yl]amino]-5-carbamimidamido-1-oxopentan-2-yl]amino]-5-carbamimidamido-1-oxopentan-2-yl]amino]-5-carbamimidamido-1-oxopentan-2-yl]amino]-5-carbamimidamido-1-oxopentan-2-yl]amino]-5-carbamimidamido-1-oxopentan-2-yl]amino]-6-oxohexyl]amino]-5-carbamimidamido-1-oxopentan-2-yl]-8-[2-(isoquinolin-5-ylsulfonylamino)ethylamino]octanamide659377: Binding affinity to His6-tagged recombinant human MSK1 by fluorescence anisotropy assaykd0.0120uM
6-chloro-2-pyrrolo[3,2-d]pyrimidin-5-ylpyridine-3-carbonitrile1893503: Inhibition of full-length N-terminal His-TEV-tagged inactive form of MSK1 (2 to 802 residues) (unknown origin) expressed in HEK293 cells using FAM-PSKPAATRKRRWSAPESR-NH2 as substrate preincubated for 1 hr followed by activation with ERK2 and substrate addition measured after 2 hrs by microfluidic chip based electrophoresisic500.0126uM
2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethyl-N-piperidin-4-ylimidazo[4,5-c]pyridine-7-carboxamide1798494: In Vitro Kinase Inhibition Assay from Article 10.1021/jm8004527: “Identification of 4-(2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethyl-7-{[(3S)-3-piperidinylmethyl]oxy}-1H-imidazo[4,5-c]pyridin-4-yl)-2-methyl-3-butyn-2-ol (GSK690693), a novel inhibitor of AKT kinase.”ic500.0130uM
4-[1-(1-aminobutyl)imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amine240487: Inhibitory concentration exhibited towards MSK-1ic500.0130uM
4-[1-(4-aminobutyl)imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amine240472: Inhibitory concentration against MSK-1ic500.0130uM
[2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethylimidazo[4,5-c]pyridin-7-yl]-[(3S)-3-aminopyrrolidin-1-yl]methanone649971: Inhibition of MSK1ic500.0140uM
2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethyl-N-[2-(methylamino)ethyl]imidazo[4,5-c]pyridine-7-carboxamide1798494: In Vitro Kinase Inhibition Assay from Article 10.1021/jm8004527: “Identification of 4-(2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethyl-7-{[(3S)-3-piperidinylmethyl]oxy}-1H-imidazo[4,5-c]pyridin-4-yl)-2-methyl-3-butyn-2-ol (GSK690693), a novel inhibitor of AKT kinase.”ic500.0150uM
2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethylbenzimidazol-5-ol240487: Inhibitory concentration exhibited towards MSK-1ic500.0170uM
4-(1-piperidin-4-ylimidazo[4,5-c]pyridin-2-yl)-1,2,5-oxadiazol-3-amine240472: Inhibitory concentration against MSK-1ic500.0170uM
Sunitinib508073: Binding affinity to RPS6KA2(Kin.Dom.1-N-terminal)kd0.0170uM
1-(5-chloro-2-fluoropyrimidin-4-yl)pyrrolo[3,2-b]pyridine1893503: Inhibition of full-length N-terminal His-TEV-tagged inactive form of MSK1 (2 to 802 residues) (unknown origin) expressed in HEK293 cells using FAM-PSKPAATRKRRWSAPESR-NH2 as substrate preincubated for 1 hr followed by activation with ERK2 and substrate addition measured after 2 hrs by microfluidic chip based electrophoresisic500.0199uM
5-(2,5-dichloropyrimidin-4-yl)-7H-pyrrolo[2,3-d]pyrimidine1893503: Inhibition of full-length N-terminal His-TEV-tagged inactive form of MSK1 (2 to 802 residues) (unknown origin) expressed in HEK293 cells using FAM-PSKPAATRKRRWSAPESR-NH2 as substrate preincubated for 1 hr followed by activation with ERK2 and substrate addition measured after 2 hrs by microfluidic chip based electrophoresisic500.0199uM
3-(1-ethylimidazo[4,5-c]pyridin-2-yl)pyrazin-2-amine1933325: Inhibition of MSK-1 (unknown origin)ic500.0200uM
4-(1-ethyl-7-piperidin-4-yloxyimidazo[4,5-c]pyridin-2-yl)-1,2,5-oxadiazol-3-amine1798494: In Vitro Kinase Inhibition Assay from Article 10.1021/jm8004527: “Identification of 4-(2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethyl-7-{[(3S)-3-piperidinylmethyl]oxy}-1H-imidazo[4,5-c]pyridin-4-yl)-2-methyl-3-butyn-2-ol (GSK690693), a novel inhibitor of AKT kinase.”ic500.0210uM
4-[1-(3-aminopropyl)imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amine240472: Inhibitory concentration against MSK-1ic500.0220uM
N-[(2R)-1-[[(2R)-1-[[(2R)-1-[[(2R)-1-[[(2R)-1-[[(2R)-1-amino-5-(diaminomethylideneamino)-1-oxopentan-2-yl]amino]-5-(diaminomethylideneamino)-1-oxopentan-2-yl]amino]-5-(diaminomethylideneamino)-1-oxopentan-2-yl]amino]-5-(diaminomethylideneamino)-1-oxopentan-2-yl]amino]-5-(diaminomethylideneamino)-1-oxopentan-2-yl]amino]-5-(diaminomethylideneamino)-1-oxopentan-2-yl]-6-[2-(isoquinolin-5-ylsulfonylamino)ethylamino]hexanamide659387: Displacement of fluorescent-ARC-583/ARC-1042/ARC-1059 from His6-tagged recombinant human MSK1 by fluorescence anisotropy assaykd0.0260uM
N-[2-hydroxy-3-[C-phenyl-N-[4-(piperidin-1-ylmethyl)phenyl]carbonimidoyl]-1H-indol-5-yl]ethanesulfonamide389045: Binding affinity to human MSK1kd0.0310uM
5-(5-bromo-2-chloropyrimidin-4-yl)pyrrolo[3,2-d]pyrimidine1893503: Inhibition of full-length N-terminal His-TEV-tagged inactive form of MSK1 (2 to 802 residues) (unknown origin) expressed in HEK293 cells using FAM-PSKPAATRKRRWSAPESR-NH2 as substrate preincubated for 1 hr followed by activation with ERK2 and substrate addition measured after 2 hrs by microfluidic chip based electrophoresisic500.0316uM
5-(2,5-dichloropyrimidin-4-yl)pyrrolo[3,2-d]pyrimidine1893503: Inhibition of full-length N-terminal His-TEV-tagged inactive form of MSK1 (2 to 802 residues) (unknown origin) expressed in HEK293 cells using FAM-PSKPAATRKRRWSAPESR-NH2 as substrate preincubated for 1 hr followed by activation with ERK2 and substrate addition measured after 2 hrs by microfluidic chip based electrophoresisic500.0316uM
4-(1-ethyl-5-fluorobenzimidazol-2-yl)-1,2,5-oxadiazol-3-amine240487: Inhibitory concentration exhibited towards MSK-1ic500.0380uM
(15S,16S,18R)-16-hydroxy-16-(hydroxymethyl)-15-methyl-28-oxa-4,14,19-triazaoctacyclo[12.11.2.115,18.02,6.07,27.08,13.019,26.020,25]octacosa-1,6,8,10,12,20,22,24,26-nonaen-3-one624736: Binding constant for RPS6KA5(Kin.Dom.1-N-terminal) kinase domainkd0.0420uM
[2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethylimidazo[4,5-c]pyridin-7-yl]-piperazin-1-ylmethanone1798494: In Vitro Kinase Inhibition Assay from Article 10.1021/jm8004527: “Identification of 4-(2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethyl-7-{[(3S)-3-piperidinylmethyl]oxy}-1H-imidazo[4,5-c]pyridin-4-yl)-2-methyl-3-butyn-2-ol (GSK690693), a novel inhibitor of AKT kinase.”ic500.0470uM
N-[3-[2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethylimidazo[4,5-c]pyridin-6-yl]oxyphenyl]-4-(2-morpholin-4-ylethoxy)benzamide649971: Inhibition of MSK1ic500.0490uM

CTD chemical–gene interactions

66 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Valproic Aciddecreases expression, decreases methylation, affects cotreatment, increases expression6
sodium arsenitedecreases reaction, increases activity, decreases expression, increases expression, affects cotreatment4
trichostatin Aaffects cotreatment, increases expression3
N-(2-(4-bromocinnamylamino)ethyl)-5-isoquinolinesulfonamidedecreases activity2
Air Pollutantsaffects expression, increases abundance, decreases expression2
FR900359affects phosphorylation1
triphenyl phosphateaffects expression1
bisphenol Aincreases methylation1
2,5,2’,5’-tetrachlorobiphenyldecreases expression1
decabromobiphenyl etherincreases expression1
dodecyldimethylamine oxideincreases expression1
11-nor-delta(9)-tetrahydrocannabinol-9-carboxylic acidaffects methylation, increases abundance1
avermectindecreases phosphorylation1
potassium chromate(VI)decreases expression, affects cotreatment1
nickel sulfateincreases expression1
2-amino-3,8-dimethylimidazo(4,5-f)quinoxalineincreases expression1
N-benzyloxycarbonylprolylprolinaldecreases expression1
epigallocatechin gallateaffects cotreatment, decreases expression1
fasudildecreases activity1
ML 9decreases activity1
di-n-butylphosphoric acidaffects expression1
ML 7decreases activity1
SB 203580decreases reaction, increases activity, affects cotreatment1
2-(2-amino-3-methoxyphenyl)-4H-1-benzopyran-4-onedecreases reaction, increases phosphorylation1
Y 27632decreases activity1
U 0126decreases reaction, increases activity, affects cotreatment1
4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamideaffects cotreatment, increases expression1
obeticholic aciddecreases expression1
Mangifera indica extractdecreases reaction, increases phosphorylation1
ormosilincreases expression, affects binding1

ChEMBL screening assays

659 unique, capped per target: 656 binding, 2 admet, 1 functional

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL3734183BindingInhibition of RPS6 kinase phosphorylation in cells (unknown origin) incubated for 6 hrs by Western blot based cell based method3-(aryl or heteroaryl) methyleneindolin-2-one derivatives as inhibitors of cancer stem cell pathway kinases for the treatment of cancer
CHEMBL4424897ADMETInhibition of human full-length N-terminal His-tagged p70S6K expressed in baculovirus infected Sf21 insect cells using CKRRRLASLR as substrateOptimization of an azetidine series as inhibitors of colony stimulating factor-1 receptor (CSF-1R) Type II to lead to the clinical candidate JTE-952. — Bioorg Med Chem Lett
CHEMBL1963744FunctionalPUBCHEM_BIOASSAY: Navigating the Kinome. (Class of assay: other) Panel member name: RPS6KA5PubChem BioAssay data set

Cellosaurus cell lines

7 cell lines: 6 cancer cell line, 1 transformed cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_D8UUUbigene HCT 116 RPS6KA5 KOCancer cell lineMale
CVCL_D9QYUbigene HEK293 RPS6KA5 KOTransformed cell lineFemale
CVCL_DX53HAP1 RPS6KA4 (-) RPS6KA5 (-) 1Cancer cell lineMale
CVCL_DX54HAP1 RPS6KA4 (-) RPS6KA5 (-) 2Cancer cell lineMale
CVCL_DX55HAP1 RPS6KA4 (-) RPS6KA5 (-) 3Cancer cell lineMale
CVCL_TJ66HAP1 RPS6KA5 (-) 1Cancer cell lineMale
CVCL_TJ67HAP1 RPS6KA5 (-) 2Cancer cell lineMale

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.

  • Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): bone fracture, multiple sclerosis