RPS6KA5
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Also known as MSK1RLPK
Summary
RPS6KA5 (ribosomal protein S6 kinase A5, HGNC:10434) is a protein-coding gene on chromosome 14q32.11, encoding Ribosomal protein S6 kinase alpha-5 (O75582). Serine/threonine-protein kinase that is required for the mitogen or stress-induced phosphorylation of the transcription factors CREB1 and ATF1 and for the regulation of the transcription factors RELA, STAT3 and ETV1/ER81, and that contributes to gene activation by histone phosph….
Enables ATP binding activity and protein kinase activity. Involved in several processes, including interleukin-1-mediated signaling pathway; protein modification process; and regulation of DNA-templated transcription. Located in cytoplasm and nucleoplasm.
Source: NCBI Gene 9252 — RefSeq curated summary.
At a glance
- GWAS associations: 23
- Clinical variants (ClinVar): 94 total
- Druggable target: yes — 25 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_004755
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:10434 |
| Approved symbol | RPS6KA5 |
| Name | ribosomal protein S6 kinase A5 |
| Location | 14q32.11 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MSK1, RLPK |
| Ensembl gene | ENSG00000100784 |
| Ensembl biotype | protein_coding |
| OMIM | 603607 |
| Entrez | 9252 |
Gene structure
Transcript identifiers
Ensembl transcripts: 17 — 12 protein_coding, 4 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined
ENST00000418736, ENST00000536315, ENST00000554206, ENST00000556178, ENST00000556304, ENST00000556594, ENST00000614987, ENST00000648062, ENST00000886635, ENST00000886636, ENST00000886637, ENST00000886638, ENST00000886639, ENST00000946930, ENST00000946931, ENST00000946932, ENST00000946933
RefSeq mRNA: 14 — MANE Select: NM_004755
NM_001322227, NM_001322228, NM_001322229, NM_001322230, NM_001322231, NM_001322232, NM_001322233, NM_001322234, NM_001322235, NM_001322236, NM_001322237, NM_001322238, NM_004755, NM_182398
CCDS: CCDS45149, CCDS81839, CCDS9893
Canonical transcript exons
ENST00000614987 — 17 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000659690 | 90947435 | 90947550 |
| ENSE00002532615 | 91060332 | 91060641 |
| ENSE00003470942 | 90875201 | 90875360 |
| ENSE00003499312 | 90906149 | 90906299 |
| ENSE00003500697 | 90923113 | 90923196 |
| ENSE00003501897 | 90943078 | 90943185 |
| ENSE00003525052 | 90890487 | 90890678 |
| ENSE00003546891 | 91001088 | 91001159 |
| ENSE00003560051 | 90899329 | 90899422 |
| ENSE00003564120 | 90978306 | 90978524 |
| ENSE00003620587 | 90873632 | 90873795 |
| ENSE00003628614 | 90900108 | 90900241 |
| ENSE00003677962 | 90920206 | 90920309 |
| ENSE00003683166 | 90894413 | 90894583 |
| ENSE00003688732 | 90902808 | 90902969 |
| ENSE00003688941 | 90900611 | 90900736 |
| ENSE00003714652 | 90847861 | 90872322 |
Expression profiles
Bgee: expression breadth ubiquitous, 283 present calls, max score 95.08.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 9.9175 / max 568.3563, expressed in 1275 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 144483 | 8.5131 | 1225 |
| 144484 | 0.8440 | 362 |
| 144482 | 0.5340 | 239 |
| 144481 | 0.0264 | 7 |
Top tissues by expression
292 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| secondary oocyte | CL:0000655 | 95.08 | gold quality |
| cauda epididymis | UBERON:0004360 | 94.81 | gold quality |
| nipple | UBERON:0002030 | 93.64 | gold quality |
| corpus callosum | UBERON:0002336 | 93.57 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 93.05 | gold quality |
| buccal mucosa cell | CL:0002336 | 92.89 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 92.61 | gold quality |
| pons | UBERON:0000988 | 92.39 | gold quality |
| bronchial epithelial cell | CL:0002328 | 91.16 | gold quality |
| oocyte | CL:0000023 | 91.00 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 90.79 | gold quality |
| mammary duct | UBERON:0001765 | 90.65 | gold quality |
| epithelium of mammary gland | UBERON:0003244 | 90.62 | gold quality |
| skin of hip | UBERON:0001554 | 90.54 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 90.54 | gold quality |
| bronchus | UBERON:0002185 | 90.39 | gold quality |
| body of tongue | UBERON:0011876 | 90.38 | gold quality |
| orbitofrontal cortex | UBERON:0004167 | 90.36 | gold quality |
| superior surface of tongue | UBERON:0007371 | 90.24 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 90.17 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 89.77 | gold quality |
| cranial nerve II | UBERON:0000941 | 89.76 | gold quality |
| postcentral gyrus | UBERON:0002581 | 89.60 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 89.58 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 89.40 | gold quality |
| sural nerve | UBERON:0015488 | 89.32 | gold quality |
| jejunal mucosa | UBERON:0000399 | 89.31 | gold quality |
| parietal lobe | UBERON:0001872 | 89.18 | gold quality |
| mucosa of urinary bladder | UBERON:0001259 | 89.10 | gold quality |
| ventral tegmental area | UBERON:0002691 | 89.00 | gold quality |
Single-cell (SCXA)
Detected in 11 experiment(s), a significant marker in 6.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-7407 | yes | 593.17 |
| E-MTAB-5061 | yes | 272.38 |
| E-MTAB-8142 | yes | 39.72 |
| E-CURD-112 | yes | 11.66 |
| E-ANND-3 | yes | 10.04 |
| E-MTAB-9801 | yes | 7.83 |
| E-GEOD-150728 | no | 3267.11 |
| E-MTAB-2983 | no | 948.18 |
| E-HCAD-6 | no | 721.78 |
| E-CURD-46 | no | 5.18 |
| E-MTAB-6678 | no | 4.10 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): NR3C1
miRNA regulators (miRDB)
195 targeting RPS6KA5, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-5193 | 100.00 | 67.26 | 1744 |
| HSA-MIR-3924 | 100.00 | 72.09 | 2394 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-4776-3P | 100.00 | 68.73 | 1340 |
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-1468-3P | 99.96 | 72.74 | 3797 |
| HSA-MIR-1250-3P | 99.96 | 70.04 | 4038 |
| HSA-MIR-4666A-3P | 99.96 | 71.71 | 3434 |
| HSA-MIR-493-5P | 99.96 | 72.47 | 2382 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
Literature-anchored findings (GeneRIF, showing 40)
- IL1beta and TNFalpha activation of MSK1 and CREB and cAMP-response element signaling cascades occurs via ERK/p38 MAP kinases and are crucial aspects of the intracellular mechanisms that mediate MUC5AC gene expression (PMID:12690113)
- acetylation of histones may stimulate transcription by suppressing an inhibitory phosphorylation by MSK1 (PMID:15010469)
- MSK1 has a role in transforming growth factor-beta-mediated responses through p38alpha and Smad signaling pathways (PMID:15133024)
- essential role of the C-terminal domain of MSK1 for its constitutive interaction with group V secretory phospholipase A(2), which appears essential to support VEGF-mediated PAF synthesis (PMID:16479592)
- Plays a positive role in the control of cell proliferation of both HaCaT keratinocytes and the A431 human epidermoid carcinoma line. (PMID:16532028)
- As MSK1 regulates the production of pro-inflammatory cytokines, it may play a role in the pathogenesis of psoriasis. (PMID:16543895)
- MSK1 has a role downstream of p38 in the regulation of As2O3 responses (PMID:16762916)
- Thr700 phosphorylation relieves the inhibition of MSK1 by a C-terminal autoinhibitory helix and helps induce a conformational shift that protects Thr581 from dephosphorylation (PMID:17117922)
- Dimethylfumarate specifically inhibits MSK1 and 2 activations and subsequently inhibits NF-kappaB-induced gene-transcriptions, which are believed to be important in the pathogenesis of psoriasis (PMID:17495961)
- the induction of inflammatory genes by farnesol is mediated by the activation of the NF-kappaB pathway and involves MEK1/2-ERK1/2-MSK1-dependent phosphorylation of p65/RelA(Ser(276)) (PMID:18424438)
- the action of 1,25(OH)(2)D(3) on colon carcinoma cells depends on the dual action of VDR as a transcription factor and a nongenomic activator of RhoA-ROCK and p38MAPK-MSK1. (PMID:19015318)
- This study provides therefore a direct link between MSK1-mediated phosphorylation of Ser276 p65 of NF-kappaB, allowing its binding to the SCF intronic enhancer, and pathophysiological SCF expression in inflammation. (PMID:19197368)
- IL-17F may be involved in airway inflammation and remodeling via the induction of IL-11, and RafI-MEK1/2-ERK1/2-MSK1-CREB is identified as a novel signaling pathway. (PMID:19251839)
- Data reveal that TPA activates transcription of TBX2 through activating MSK1, which leads to an increase in phosphorylated histone H3 and the recruitment of Sp1 to the TBX2 gene. (PMID:19633291)
- Data provide evidence that p38 Map kinase pathway is activated leading to increased upregulation of mixed lineage kinase 3, MKK3/6, MSK1, and Mapkapk2, upon treatment of BCR/ABL expressing cells with dasatinib. (PMID:19672773)
- We conclude that RSV induces RelA activation in the innate inflammatory response via a pathway separate from that controlling RelA cytoplasmic release, mediated by ROS signaling to cytoplasmic MSK1 activation and RelA Ser-276 phosphorylation. (PMID:19706715)
- MSK1 and MSK2 are differentially regulated by CK2 during the UV response and that MSK2 is the major protein kinase responsible for the UV-induced phosphorylation of p65 at Ser(276) that positively regulates NF-kappaB activity in MDA-MB-231 cells (PMID:19933278)
- The MSK1 can be phosphorylated and activated in cells by both ERK1/2 and p38alpha. (PMID:20044958)
- CREB controls MSK1-mediated phosphorylation of histone H3 at the c-fos promoter in vitro (PMID:20089855)
- Bile acid regulates MUC2 transcription in colon cancer cells via positive EGFR/PKC/Ras/ERK/CREB, PI3K/Akt/IkappaB/NF-kappaB and p38/MSK1/CREB pathways and negative JNK/c-Jun/AP-1 pathway. (PMID:20198339)
- MiR-148a attenuates paclitaxel resistance of hormone-refractory, drug-resistant prostate cancer PC3 cells by regulating MSK1 expression (PMID:20406806)
- In this study, by applying a novel method, we have identified the phosphorylation sites in human MSK1 mitogen- and stress-activated protein kinase 1, and show that MRK-beta could also activate MSK1 through direct interaction. (PMID:20408143)
- MSK1- and MSK2-mediated H3K27me3S28 phosphorylation serves as a mechanism to activate a subset of PcG target genes determined by the biological stimuli and thereby modulate the gene expression program determining cell fate. (PMID:20864036)
- MSK1 is a direct and potent transcriptional activator when targeted to c-fos promotor, and when targeted to alpha-globin promoter induces H3 S28 phosphorylation reactivating expression of this polycomb-silenced gene. (PMID:21282660)
- MSK1 is an important downstream kinase involved in CS-induced NF-kappaB activation (PMID:22312446)
- Astaxanthin attenuates the UVB-induced secretion of prostaglandin E2 and interleukin-8 in human keratinocytes by interrupting MSK1 phosphorylation in a ROS depletion-independent manner (PMID:22626465)
- MSK1 plays an important role for hormone-dependent breast cancer growth (PMID:23604116)
- Angiopoietin 2-mediated signaling via survivin/ref-1/MSK-1 pathway promotes doxorubicin resistance in HepG2 cells. (PMID:23643942)
- MSK1 and MSK2 are required for maximal TFF 1 induction. (PMID:23675462)
- Data suggest that MSK1 and MSK2 are the major CREB kinases in fibroblast-like synoviocytes from rheumatoid arthritis patients stimulated with lysophosphatidic acid and that phosphorylation of CREB1 at Ser-133 plays a significant role in IL-8 production. (PMID:24792438)
- These results highlight the relevance of MSK1 in the up-regulation of RARbeta by prostaglandin E2. (PMID:24953041)
- Authors conclude that paramyxoviruses trigger the DNA damage response, a pathway required for MSK1 activation of phospho Ser 276 RelA formation to trigger the IRF7-RIG-I amplification loop necessary for mucosal interferon production. (PMID:25520509)
- Increased MSK1 activity is critically important for Epstein-Barr virus LMP1-promoted cell proliferation and transformation. (PMID:25958199)
- Interrupting MSK1 activation is a new target for antioxidants. (PMID:26030901)
- KSHV activates the MSK1/2-CREB1 pathway during primary infection and that it depends on this pathway for viral lytic replication. I (PMID:26109721)
- Our findings indicate that MSK1/beta-catenin signaling serves as an escape survival signal upon PI3K inhibition and provides a strong rationale for the combined use of PI3K and MSK1/beta-catenin inhibition to induce lethal growth inhibition in human GBM cells. (PMID:27196759)
- Results show that MSK1 phosphorylates H3S10 through p38-MAPK pathway in gastric cancer patients. (PMID:27588146)
- MSK1 was overexpressed in 148 out of 329 colorectal cancer (CRC) patients. CRC patients with high MSK1 expression had shorter overall survival than those with low MSK1, especially among patients with stage III tumors. Overexpression of MSK1 is associated with poor prognosis in CRC and is connected to tumor aggressiveness. (PMID:28314603)
- High MSK1 is associated with improved breast cancer-specific survival in early stage invasive breast cancer patients, and has additional prognostic value in HER2-negative and non-basal like disease. (PMID:29327245)
- We show that MSK1 downregulation impairs the differentiation of breast cancer cells, increasing their bone homing and growth capacities. MSK1 controls the expression of genes required for luminal cell differentiation, including the GATA3 and FOXA1 transcription factors, by modulating their promoter chromatin status. (PMID:29358704)
Cross-species orthologs
9 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | rps6ka5 | ENSDARG00000060551 |
| mus_musculus | Rps6ka5 | ENSMUSG00000021180 |
| rattus_norvegicus | Rps6ka5 | ENSRNOG00000004362 |
| drosophila_melanogaster | JIL-1 | FBGN0020412 |
| drosophila_melanogaster | S6k | FBGN0283472 |
| caenorhabditis_elegans | rskn-2 | WBGENE00008311 |
| caenorhabditis_elegans | WBGENE00012929 | |
| caenorhabditis_elegans | WBGENE00017898 | |
| caenorhabditis_elegans | WBGENE00044281 |
Paralogs (7): RPS6KA2 (ENSG00000071242), RPS6KA6 (ENSG00000072133), RPS6KB1 (ENSG00000108443), RPS6KA1 (ENSG00000117676), RPS6KA4 (ENSG00000162302), RPS6KB2 (ENSG00000175634), RPS6KA3 (ENSG00000177189)
Protein
Protein identifiers
Ribosomal protein S6 kinase alpha-5 — O75582 (reviewed: O75582)
Alternative names: 90 kDa ribosomal protein S6 kinase 5, Nuclear mitogen- and stress-activated protein kinase 1, RSK-like protein kinase
All UniProt accessions (5): O75582, A0A3B3ISL8, G3V2D1, G3V4D7, H0YJE1
UniProt curated annotations — full annotation on UniProt →
Function. Serine/threonine-protein kinase that is required for the mitogen or stress-induced phosphorylation of the transcription factors CREB1 and ATF1 and for the regulation of the transcription factors RELA, STAT3 and ETV1/ER81, and that contributes to gene activation by histone phosphorylation and functions in the regulation of inflammatory genes. Phosphorylates CREB1 and ATF1 in response to mitogenic or stress stimuli such as UV-C irradiation, epidermal growth factor (EGF) and anisomycin. Plays an essential role in the control of RELA transcriptional activity in response to TNF and upon glucocorticoid, associates in the cytoplasm with the glucocorticoid receptor NR3C1 and contributes to RELA inhibition and repression of inflammatory gene expression. In skeletal myoblasts is required for phosphorylation of RELA at ‘Ser-276’ during oxidative stress. In erythropoietin-stimulated cells, is necessary for the ‘Ser-727’ phosphorylation of STAT3 and regulation of its transcriptional potential. Phosphorylates ETV1/ER81 at ‘Ser-191’ and ‘Ser-216’, and thereby regulates its ability to stimulate transcription, which may be important during development and breast tumor formation. Directly represses transcription via phosphorylation of ‘Ser-1’ of histone H2A. Phosphorylates ‘Ser-10’ of histone H3 in response to mitogenics, stress stimuli and EGF, which results in the transcriptional activation of several immediate early genes, including proto-oncogenes c-fos/FOS and c-jun/JUN. May also phosphorylate ‘Ser-28’ of histone H3. Mediates the mitogen- and stress-induced phosphorylation of high mobility group protein 1 (HMGN1/HMG14). In lipopolysaccharide-stimulated primary macrophages, acts downstream of the Toll-like receptor TLR4 to limit the production of pro-inflammatory cytokines. Functions probably by inducing transcription of the MAP kinase phosphatase DUSP1 and the anti-inflammatory cytokine interleukin 10 (IL10), via CREB1 and ATF1 transcription factors. Plays a role in neuronal cell death by mediating the downstream effects of excitotoxic injury. Phosphorylates TRIM7 at ‘Ser-107’ in response to growth factor signaling via the MEK/ERK pathway, thereby stimulating its ubiquitin ligase activity.
Subunit / interactions. Forms a complex with either MAPK1/ERK2 or MAPK3/ERK1 in quiescent cells which transiently dissociates following mitogenic stimulation. Also associates with MAPK14/p38-alpha. Activated RPS6KA5 associates with and phosphorylates the NF-kappa-B p65 subunit RELA. Interacts with CREBBP and EP300.
Subcellular location. Nucleus. Cytoplasm.
Tissue specificity. Widely expressed with high levels in heart, brain and placenta. Less abundant in lung, kidney and liver.
Post-translational modifications. Ser-376 and Thr-581 phosphorylation is required for kinase activity. Ser-376 and Ser-212 are autophosphorylated by the C-terminal kinase domain, and their phosphorylation is essential for the catalytic activity of the N-terminal kinase domain. Phosphorylated at Ser-360, Thr-581 and Thr-700 by MAPK1/ERK2, MAPK3/ERK1 and MAPK14/p38-alpha. Autophosphorylated at Ser-750, Ser-752 and Ser-758 by the N-terminal kinase domain. Ubiquitinated.
Activity regulation. Activated by phosphorylation at Ser-360, Thr-581 and Thr-700 by MAPK1/ERK2, MAPK3/ERK1 and MAPK14/p38-alpha, and by further autophosphorylation of Ser-212, Ser-376 and Ser-381 by the activated C-terminal kinase domain. The active N-terminal kinase domain finally phosphorylates downstream substrates, as well as Ser-750, Ser-752 and Ser-758 in its own C-terminal region.
Miscellaneous. Enzyme activity requires the presence of both kinase domains.
Similarity. Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| O75582-1 | 1 | yes |
| O75582-2 | 2 | |
| O75582-3 | 3 |
RefSeq proteins (14): NP_001309156, NP_001309157, NP_001309158, NP_001309159, NP_001309160, NP_001309161, NP_001309162, NP_001309163, NP_001309164, NP_001309165, NP_001309166, NP_001309167, NP_004746, NP_872198 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000719 | Prot_kinase_dom | Domain |
| IPR000961 | AGC-kinase_C | Domain |
| IPR008271 | Ser/Thr_kinase_AS | Active_site |
| IPR011009 | Kinase-like_dom_sf | Homologous_superfamily |
| IPR016239 | Ribosomal_S6_kinase_II | Family |
| IPR017441 | Protein_kinase_ATP_BS | Binding_site |
| IPR017892 | Pkinase_C | Domain |
Pfam: PF00069, PF00433
Catalyzed reactions (Rhea), 2 shown:
- L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+) (RHEA:17989)
- L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+) (RHEA:46608)
UniProt features (105 total): helix 28, strand 22, modified residue 14, turn 8, mutagenesis site 7, binding site 4, sequence variant 4, sequence conflict 4, domain 3, splice variant 3, compositionally biased region 3, active site 2, region of interest 2, chain 1
Structure
Experimental structures (PDB)
8 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 1VZO | X-RAY DIFFRACTION | 1.8 |
| 3KN6 | X-RAY DIFFRACTION | 2 |
| 3KN5 | X-RAY DIFFRACTION | 2.4 |
| 7UP6 | X-RAY DIFFRACTION | 2.6 |
| 7UP5 | X-RAY DIFFRACTION | 2.8 |
| 7UP7 | X-RAY DIFFRACTION | 2.8 |
| 7UP8 | X-RAY DIFFRACTION | 2.9 |
| 7UP4 | X-RAY DIFFRACTION | 3 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O75582-F1 | 70.80 | 0.26 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (2): 544 (proton acceptor); 177 (proton acceptor)
Ligand- & substrate-binding residues (4): 55–63; 81; 432–440; 455
Post-translational modifications (14): 212, 360, 376, 381, 581, 647, 657, 691, 695, 700, 750, 752, 758, 798
Mutagenesis-validated functional residues (7):
| Position | Phenotype |
|---|---|
| 195 | loss of kinase activity. |
| 212 | inactivates the n-terminal kinase domain. |
| 360 | decreases kinase activity by 60% in response to pma and uv-c. |
| 376 | loss of kinase activity, and decreases the phosphorylation of s-360 and t-581. |
| 565 | loss of kinase activity. |
| 581 | loss of kinase activity, and blocks phosphorylation of s-212; s-376 and s-381 in response to pma and uv-c. |
| 700 | strongly reduces phosphorylation of t-581 in response to pma and uv-c. |
Function
Pathways and Gene Ontology
Reactome pathways
38 pathways
| ID | Pathway |
|---|---|
| R-HSA-198753 | ERK/MAPK targets |
| R-HSA-199920 | CREB phosphorylation |
| R-HSA-375165 | NCAM signaling for neurite out-growth |
| R-HSA-437239 | Recycling pathway of L1 |
| R-HSA-5621575 | CD209 (DC-SIGN) signaling |
| R-HSA-1266738 | Developmental Biology |
| R-HSA-1280215 | Cytokine Signaling in Immune system |
| R-HSA-162582 | Signal Transduction |
| R-HSA-166016 | Toll Like Receptor 4 (TLR4) Cascade |
| R-HSA-166058 | MyD88:MAL(TIRAP) cascade initiated on plasma membrane |
| R-HSA-166166 | MyD88-independent TLR4 cascade |
| R-HSA-166520 | Signaling by NTRKs |
| R-HSA-168138 | Toll Like Receptor 9 (TLR9) Cascade |
| R-HSA-168142 | Toll Like Receptor 10 (TLR10) Cascade |
| R-HSA-168164 | Toll Like Receptor 3 (TLR3) Cascade |
| R-HSA-168176 | Toll Like Receptor 5 (TLR5) Cascade |
| R-HSA-168179 | Toll Like Receptor TLR1:TLR2 Cascade |
| R-HSA-168181 | Toll Like Receptor 7/8 (TLR7/8) Cascade |
| R-HSA-168188 | Toll Like Receptor TLR6:TLR2 Cascade |
| R-HSA-168249 | Innate Immune System |
| R-HSA-168256 | Immune System |
| R-HSA-168898 | Toll-like Receptor Cascades |
| R-HSA-181438 | Toll Like Receptor 2 (TLR2) Cascade |
| R-HSA-187037 | Signaling by NTRK1 (TRKA) |
| R-HSA-198725 | Nuclear Events (kinase and transcription factor activation) |
| R-HSA-373760 | L1CAM interactions |
| R-HSA-422475 | Axon guidance |
| R-HSA-448424 | Interleukin-17 signaling |
| R-HSA-449147 | Signaling by Interleukins |
| R-HSA-450282 | MAPK targets/ Nuclear events mediated by MAP kinases |
MSigDB gene sets: 459 (showing top):
E2F_Q4, MYAATNNNNNNNGGC_UNKNOWN, E2F_Q4_01, REACTOME_INNATE_IMMUNE_SYSTEM, TGCGCANK_UNKNOWN, E2F4DP1_01, MORF_MSH3, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOBP_INFLAMMATORY_RESPONSE, GOBP_RESPONSE_TO_PEPTIDE, KEGG_MAPK_SIGNALING_PATHWAY, GOBP_POSITIVE_REGULATION_OF_CREB_TRANSCRIPTION_FACTOR_ACTIVITY, MORF_BRCA1, GAUSSMANN_MLL_AF4_FUSION_TARGETS_C_UP, REACTOME_NCAM_SIGNALING_FOR_NEURITE_OUT_GROWTH
GO Biological Process (15): negative regulation of cytokine production (GO:0001818), regulation of DNA-templated transcription (GO:0006355), protein phosphorylation (GO:0006468), inflammatory response (GO:0006954), axon guidance (GO:0007411), obsolete positive regulation of CREB transcription factor activity (GO:0032793), intracellular signal transduction (GO:0035556), TORC1 signaling (GO:0038202), post-translational protein modification (GO:0043687), negative regulation of DNA-templated transcription (GO:0045892), positive regulation of transcription by RNA polymerase II (GO:0045944), obsolete positive regulation of NF-kappaB transcription factor activity (GO:0051092), interleukin-1-mediated signaling pathway (GO:0070498), regulation of postsynapse organization (GO:0099175), chromatin remodeling (GO:0006338)
GO Molecular Function (14): magnesium ion binding (GO:0000287), protein serine/threonine kinase activity (GO:0004674), protein tyrosine kinase activity (GO:0004713), ATP binding (GO:0005524), histone H3S10 kinase activity (GO:0035175), histone H3S28 kinase activity (GO:0044022), histone H2AS1 kinase activity (GO:0044024), protein serine kinase activity (GO:0106310), nucleotide binding (GO:0000166), protein kinase activity (GO:0004672), protein binding (GO:0005515), kinase activity (GO:0016301), transferase activity (GO:0016740), metal ion binding (GO:0046872)
GO Cellular Component (3): nucleus (GO:0005634), nucleoplasm (GO:0005654), cytoplasm (GO:0005737)
Reactome top-level categories
Rollup of top-12 pathways:
| Category | Pathways |
|---|---|
| Toll-like Receptor Cascades | 6 |
| Nuclear Events (kinase and transcription factor activation) | 2 |
| MAPK targets/ Nuclear events mediated by MAP kinases | 2 |
| Immune System | 2 |
| Toll Like Receptor 4 (TLR4) Cascade | 2 |
| Toll Like Receptor 2 (TLR2) Cascade | 2 |
| Axon guidance | 1 |
| L1CAM interactions | 1 |
| C-type lectin receptors (CLRs) | 1 |
| Toll Like Receptor TLR1:TLR2 Cascade | 1 |
| Toll Like Receptor TLR6:TLR2 Cascade | 1 |
| Signaling by Receptor Tyrosine Kinases | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| protein kinase activity | 3 |
| protein serine/threonine kinase activity | 3 |
| DNA-templated transcription | 2 |
| protein modification process | 2 |
| intracellular anatomical structure | 2 |
| histone H3 kinase activity | 2 |
| cellular anatomical structure | 2 |
| cytokine production | 1 |
| regulation of cytokine production | 1 |
| negative regulation of gene expression | 1 |
| negative regulation of multicellular organismal process | 1 |
| regulation of gene expression | 1 |
| regulation of RNA biosynthetic process | 1 |
| phosphorylation | 1 |
| defense response | 1 |
| axonogenesis | 1 |
| neuron projection guidance | 1 |
| signal transduction | 1 |
| TOR signaling | 1 |
| regulation of DNA-templated transcription | 1 |
| negative regulation of RNA biosynthetic process | 1 |
| regulation of transcription by RNA polymerase II | 1 |
| transcription by RNA polymerase II | 1 |
| positive regulation of DNA-templated transcription | 1 |
| cytokine-mediated signaling pathway | 1 |
| cellular response to interleukin-1 | 1 |
| regulation of synapse organization | 1 |
| postsynapse organization | 1 |
| chromatin organization | 1 |
| metal ion binding | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| histone H2A kinase activity | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| kinase activity | 1 |
| phosphotransferase activity, alcohol group as acceptor | 1 |
| catalytic activity, acting on a protein | 1 |
| binding | 1 |
| transferase activity, transferring phosphorus-containing groups | 1 |
Protein interactions and networks
STRING
1128 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RPS6KA5 | ATF1 | P18846 | 783 |
| RPS6KA5 | CREB1 | P16220 | 702 |
| RPS6KA5 | EP300 | Q09472 | 602 |
| RPS6KA5 | YWHAZ | P29213 | 600 |
| RPS6KA5 | H3C1 | P02295 | 586 |
| RPS6KA5 | H3-7 | Q5TEC6 | 586 |
| RPS6KA5 | H3C14 | Q71DI3 | 585 |
| RPS6KA5 | H3-5 | Q6NXT2 | 585 |
| RPS6KA5 | H3-4 | Q16695 | 585 |
| RPS6KA5 | H3-3A | P06351 | 584 |
| RPS6KA5 | SMARCA4 | P51532 | 517 |
| RPS6KA5 | EZH2 | Q15910 | 512 |
| RPS6KA5 | PGR | P06401 | 500 |
| RPS6KA5 | CD58 | P19256 | 500 |
| RPS6KA5 | JUN | P05412 | 481 |
IntAct
75 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MAPK14 | OBSL1 | psi-mi:“MI:0914”(association) | 0.790 |
| RPS6KA5 | CSNK2B | psi-mi:“MI:0915”(physical association) | 0.660 |
| CSNK2B | RPS6KA5 | psi-mi:“MI:0914”(association) | 0.660 |
| MAPK14 | RPS6KA5 | psi-mi:“MI:0914”(association) | 0.660 |
| CHCHD4 | SSNA1 | psi-mi:“MI:0914”(association) | 0.640 |
| MAP3K20 | RPS6KA5 | psi-mi:“MI:0915”(physical association) | 0.600 |
| RPS6KA5 | MAP3K20 | psi-mi:“MI:0915”(physical association) | 0.600 |
| RPS6KA5 | MAP3K20 | psi-mi:“MI:0403”(colocalization) | 0.600 |
| RPS6KA5 | CTNNA3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| RPS6KA5 | RELA | psi-mi:“MI:2364”(proximity) | 0.540 |
| RELA | RPS6KA5 | psi-mi:“MI:0915”(physical association) | 0.540 |
| CLEC4A | SEMA7A | psi-mi:“MI:0914”(association) | 0.530 |
| FAM174A | BLTP3B | psi-mi:“MI:0914”(association) | 0.530 |
| LAMP3 | METTL15 | psi-mi:“MI:0914”(association) | 0.530 |
| KDM3A | RPS6KA5 | psi-mi:“MI:0915”(physical association) | 0.520 |
| RPS6KA5 | psi-mi:“MI:0217”(phosphorylation reaction) | 0.440 | |
| RPS6KA5 | MAPT | psi-mi:“MI:0217”(phosphorylation reaction) | 0.440 |
| RPS6KA5 | PKM | psi-mi:“MI:0217”(phosphorylation reaction) | 0.440 |
| RPS6KA5 | HSP90AA4P | psi-mi:“MI:0915”(physical association) | 0.400 |
| RPS6KA5 | HSP90AB1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| RPS6KA5 | NR3C1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| RPA1 | RPS6KA5 | psi-mi:“MI:0915”(physical association) | 0.370 |
| RPS6KA5 | IL17RB | psi-mi:“MI:0915”(physical association) | 0.370 |
| RPS6KA5 | ALG8 | psi-mi:“MI:0915”(physical association) | 0.370 |
| RPS6KA5 | GPRASP2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| FN1 | RPS6KA5 | psi-mi:“MI:0915”(physical association) | 0.370 |
BioGRID (145): RPS6KA5 (Affinity Capture-MS), HIST1H2BB (Biochemical Activity), MBP (Biochemical Activity), HIST1H1A (Biochemical Activity), RPS6KA5 (Co-localization), RELA (Co-localization), EGF (Co-localization), ATF2 (Co-localization), ATF1 (Biochemical Activity), MAPK14 (Reconstituted Complex), RPS6KA5 (Affinity Capture-MS), HSP90AA4P (Affinity Capture-MS), RPS6KA5 (Affinity Capture-RNA), RPS6KA5 (Synthetic Lethality), MAPK1 (Phenotypic Enhancement)
ESM2 similar proteins: A2VDV2, A8XJL7, O13310, O75582, O97627, P00518, P07934, P13286, P18652, P18653, P18654, P21146, P23443, P26817, P26818, P26819, P35626, P51812, P54645, P67998, P67999, Q09639, Q12706, Q15208, Q21734, Q2L6W9, Q2LZZ7, Q39030, Q3UYH7, Q54IH8, Q5F3L1, Q5R4K3, Q5R8M1, Q64682, Q6PFQ0, Q6TGC6, Q6TJY3, Q7TPS0, Q7TSE6, Q8BGW6
Diamond homologs: A1Z9X0, A2YBX5, F1M7Y5, F4HPN2, F4HYG2, F4I4F2, F4J6F6, O13310, O15021, O42626, O48963, O60307, O64682, O75582, O75676, P09217, P10666, P15792, P18652, P18654, P25341, P28178, P31034, P34099, P34102, P34103, P38938, P41743, P42818, P47197, P51812, P51817, P53739, P53894, P93025, Q02956, Q05513, Q05999, Q09831, Q0DCT8
SIGNOR signaling
62 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| RPS6KA5 | up-regulates | STAT3 | phosphorylation |
| MAPK1 | up-regulates | RPS6KA5 | phosphorylation |
| RPS6KA5 | “down-regulates activity” | H3-3A | phosphorylation |
| RPS6KA5 | “down-regulates activity” | H3C1 | phosphorylation |
| RPS6KA5 | up-regulates | H2AC11 | phosphorylation |
| MAPK14 | “up-regulates activity” | RPS6KA5 | phosphorylation |
| MAPK3 | up-regulates | RPS6KA5 | phosphorylation |
| RPS6KA5 | “up-regulates activity” | RPS6KA5 | phosphorylation |
| RPS6KA5 | unknown | RPS6KA5 | phosphorylation |
| RPS6KA5 | “up-regulates activity” | H3-3A | phosphorylation |
| RPS6KA5 | up-regulates | NfKb-p65/p50 | phosphorylation |
| RPS6KA5 | “up-regulates activity” | PLA2G4A | phosphorylation |
| RPS6KA5 | unknown | NR4A1 | phosphorylation |
| ERK1/2 | up-regulates | RPS6KA5 | phosphorylation |
| ERK1/2 | “up-regulates activity” | RPS6KA5 | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 72 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Interleukin-17 signaling | 5 | 25.9× | 3e-04 |
| Toll Like Receptor 10 (TLR10) Cascade | 5 | 22.0× | 3e-04 |
| Toll Like Receptor 5 (TLR5) Cascade | 5 | 22.0× | 3e-04 |
| MyD88 cascade initiated on plasma membrane | 5 | 20.8× | 3e-04 |
| Toll Like Receptor 3 (TLR3) Cascade | 5 | 19.8× | 3e-04 |
| TRIF (TICAM1)-mediated TLR4 signaling | 5 | 19.4× | 3e-04 |
| TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation | 5 | 19.4× | 3e-04 |
| MyD88 dependent cascade initiated on endosome | 5 | 19.4× | 3e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
94 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 76 |
| Likely benign | 1 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
4668 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 14:90875195:TCTTA:T | donor_loss | 1.0000 |
| 14:90875196:CTTAC:C | donor_loss | 1.0000 |
| 14:90875197:TTA:T | donor_loss | 1.0000 |
| 14:90875198:TACC:T | donor_loss | 1.0000 |
| 14:90875361:C:CC | acceptor_gain | 1.0000 |
| 14:90875365:C:CT | acceptor_gain | 1.0000 |
| 14:90890482:CTCA:C | donor_loss | 1.0000 |
| 14:90890483:TCAC:T | donor_loss | 1.0000 |
| 14:90890484:CAC:C | donor_loss | 1.0000 |
| 14:90890485:A:AC | donor_gain | 1.0000 |
| 14:90890485:A:T | donor_loss | 1.0000 |
| 14:90890486:C:CT | donor_gain | 1.0000 |
| 14:90890486:CCAAA:C | donor_gain | 1.0000 |
| 14:90890614:CG:C | acceptor_gain | 1.0000 |
| 14:90890615:G:C | acceptor_gain | 1.0000 |
| 14:90890674:AAATT:A | acceptor_gain | 1.0000 |
| 14:90890675:AATT:A | acceptor_gain | 1.0000 |
| 14:90890676:ATTC:A | acceptor_loss | 1.0000 |
| 14:90890677:TT:T | acceptor_gain | 1.0000 |
| 14:90890677:TTC:T | acceptor_loss | 1.0000 |
| 14:90890678:TC:T | acceptor_loss | 1.0000 |
| 14:90890679:C:CA | acceptor_loss | 1.0000 |
| 14:90890679:C:CC | acceptor_gain | 1.0000 |
| 14:90890680:T:A | acceptor_loss | 1.0000 |
| 14:90894407:TTATA:T | donor_loss | 1.0000 |
| 14:90894408:TATA:T | donor_loss | 1.0000 |
| 14:90894409:ATAC:A | donor_loss | 1.0000 |
| 14:90894410:TACCT:T | donor_loss | 1.0000 |
| 14:90894411:A:AT | donor_loss | 1.0000 |
| 14:90894462:A:AC | donor_gain | 1.0000 |
AlphaMissense
5334 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 14:90872251:T:A | R744S | 1.000 |
| 14:90872251:T:G | R744S | 1.000 |
| 14:90872252:C:G | R744T | 1.000 |
| 14:90872254:T:A | R743S | 1.000 |
| 14:90872254:T:G | R743S | 1.000 |
| 14:90872255:C:G | R743T | 1.000 |
| 14:90873736:A:G | W686R | 1.000 |
| 14:90873736:A:T | W686R | 1.000 |
| 14:90873767:C:A | R675S | 1.000 |
| 14:90873767:C:G | R675S | 1.000 |
| 14:90873768:C:A | R675M | 1.000 |
| 14:90873768:C:G | R675T | 1.000 |
| 14:90873789:A:G | L668P | 1.000 |
| 14:90873792:A:G | L667P | 1.000 |
| 14:90875240:A:G | W653R | 1.000 |
| 14:90875240:A:T | W653R | 1.000 |
| 14:90890497:C:T | G609D | 1.000 |
| 14:90890498:C:G | G609R | 1.000 |
| 14:90890505:C:A | W606C | 1.000 |
| 14:90890505:C:G | W606C | 1.000 |
| 14:90890507:A:G | W606R | 1.000 |
| 14:90890507:A:T | W606R | 1.000 |
| 14:90890623:C:T | G567E | 1.000 |
| 14:90890628:A:C | D565E | 1.000 |
| 14:90890628:A:T | D565E | 1.000 |
| 14:90890629:T:A | D565V | 1.000 |
| 14:90890629:T:C | D565G | 1.000 |
| 14:90890629:T:G | D565A | 1.000 |
| 14:90890630:C:G | D565H | 1.000 |
| 14:90890676:A:C | N549K | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000001221 (14:91015340 T>C), RS1000005254 (14:91037749 G>C), RS1000009092 (14:90956169 T>C,G), RS1000037221 (14:91057365 T>A), RS1000066331 (14:90907742 G>A,C), RS1000074301 (14:91036355 C>A,G,T), RS1000076188 (14:91029472 T>C), RS1000091206 (14:91000759 G>A), RS1000105359 (14:90903749 C>T), RS1000115997 (14:90936617 A>C), RS1000122676 (14:91012101 T>C), RS1000161743 (14:90879228 T>C,G), RS1000169209 (14:91004749 C>T), RS1000194933 (14:90877208 T>C), RS1000217309 (14:91021427 G>A,C)
Disease associations
OMIM: gene MIM:603607 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
23 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004097_2 | Response to platinum-based neoadjuvant chemotherapy in cervical cancer | 7.000000e-06 |
| GCST005795_36 | Femoral neck bone mineral density | 4.000000e-08 |
| GCST005796_24 | Lumbar spine bone mineral density | 6.000000e-12 |
| GCST005956_47 | Waist-to-hip ratio adjusted for BMI | 7.000000e-07 |
| GCST005962_28 | Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test) | 7.000000e-07 |
| GCST006423_12 | Fracture | 2.000000e-17 |
| GCST006979_1012 | Heel bone mineral density | 2.000000e-36 |
| GCST007691_32 | Femoral neck bone mineral density | 2.000000e-15 |
| GCST008522_92 | Bitter alcoholic beverage consumption | 8.000000e-06 |
| GCST009597_213 | Multiple sclerosis | 8.000000e-06 |
| GCST010916_23 | Proportion of activated microglia (inferior temporal cortex) | 7.000000e-06 |
| GCST010988_543 | Adult body size | 8.000000e-10 |
| GCST90013406_110 | Liver enzyme levels (alkaline phosphatase) | 3.000000e-12 |
| GCST90020024_474 | A body shape index | 5.000000e-08 |
| GCST90020024_773 | A body shape index | 3.000000e-10 |
| GCST90020025_430 | Waist-to-hip ratio adjusted for BMI | 1.000000e-14 |
| GCST90020025_431 | Waist-to-hip ratio adjusted for BMI | 2.000000e-13 |
| GCST90020026_239 | Hip index | 8.000000e-09 |
| GCST90020026_240 | Hip index | 2.000000e-10 |
| GCST90020027_683 | Waist-hip index | 3.000000e-15 |
| GCST90020027_684 | Waist-hip index | 1.000000e-13 |
| GCST90020028_1871 | Hip circumference adjusted for BMI | 2.000000e-09 |
| GCST90020029_400 | Waist circumference adjusted for body mass index | 4.000000e-09 |
EFO canonical traits (11, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007943 | response to platinum-based neoadjuvant chemotherapy |
| EFO:0007785 | femoral neck bone mineral density |
| EFO:0007701 | spine bone mineral density |
| EFO:0007788 | BMI-adjusted waist-hip ratio |
| EFO:0008007 | age at assessment |
| EFO:0008343 | sex interaction measurement |
| EFO:0009270 | heel bone mineral density |
| EFO:0010092 | bitter alcoholic beverage consumption measurement |
| EFO:0004533 | alkaline phosphatase measurement |
| EFO:0007789 | BMI-adjusted waist circumference |
| EFO:0008039 | BMI-adjusted hip circumference |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL3832633 (PROTEIN FAMILY), CHEMBL4237 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
25 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 170,788 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1287853 | FEDRATINIB | 4 | 3,554 |
| CHEMBL1789941 | RUXOLITINIB | 4 | 11,547 |
| CHEMBL502835 | NINTEDANIB | 4 | 8,545 |
| CHEMBL535 | SUNITINIB | 4 | 79,020 |
| CHEMBL608533 | MIDOSTAURIN | 4 | 7,259 |
| CHEMBL223360 | LINIFANIB | 3 | 3,925 |
| CHEMBL274654 | ORANTINIB | 3 | 3,596 |
| CHEMBL300138 | ENZASTAURIN | 3 | 3,209 |
| CHEMBL38380 | FASUDIL | 3 | 11,953 |
| CHEMBL428690 | ALVOCIDIB | 3 | 27,781 |
| CHEMBL522892 | DOVITINIB | 3 | 4,944 |
| CHEMBL603469 | LESTAURTINIB | 3 | |
| CHEMBL91829 | RUBOXISTAURIN | 3 | 77 |
| CHEMBL1721885 | SU-014813 | 2 | 363 |
| CHEMBL1980297 | ILORASERTIB | 2 | 581 |
| CHEMBL475251 | R-406 | 2 | 762 |
| CHEMBL495727 | AT-9283 | 2 | 1,376 |
| CHEMBL513909 | BI-2536 | 2 | 895 |
| CHEMBL3544960 | AT-13148 | 1 | 779 |
| CHEMBL1908397 | KW-2449 | 1 | 622 |
| CHEMBL2140408 | AMG-900 | 1 | |
| CHEMBL296468 | BMS-387032 | 1 | |
| CHEMBL3128043 | PF-03758309 | 1 | |
| CHEMBL494089 | GSK-690693 | 1 | |
| CHEMBL574738 | AST-487 | 1 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — MSK subfamily
Most potent curated ligand interactions (3 total), top 3:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| SB-747651A | Inhibition | 9.3 | pIC50 |
| compound 24 [PMID: 15955699] | Inhibition | 8.85 | pIC50 |
| compound 23 [PMID: 35816678] | Inhibition | 6.84 | pIC50 |
Binding affinities (BindingDB)
23 measured of 24 human assays (24 total across all organisms); most potent 23 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| Staurosporine | KD | 1.7 nM |
| 4-[2-(4-amino-1,2,5-oxadiazol-3-yl)-7-(3-aminopropoxy)-1-ethyl-1H-imidazo[4,5-c]pyridin-4-yl]-2-methylbut-3-yn-2-ol | IC50 | 6 nM |
| Pyrrolopyridine, 16 | IC50 | 8.5 nM |
| JMC502647 Compound 8 | IC50 | 10 nM |
| 4-[1-ethyl-7-(piperidin-4-ylmethoxy)-1H-imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amine | IC50 | 56 nM |
| Pyrrolopyridine, 9 | IC50 | 66 nM |
| 4-[1-ethyl-7-(piperidin-4-yloxy)-1H-imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amine | IC50 | 79 nM |
| 4-[7-(3-aminopropoxy)-1-ethyl-4-(furan-3-yl)-1H-imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amine | IC50 | 79 nM |
| 2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethyl-N-[2-(methylamino)ethyl]-1H-imidazo[4,5-c]pyridine-7-carboxamide | IC50 | 126 nM |
| Pyrrolopyridine, 23 | IC50 | 126 nM |
| PKC-412 | KD | 190 nM |
| 4-{1-ethyl-7-[(piperidin-4-ylamino)methyl]-1H-imidazo[4,5-c]pyridin-2-yl}-1,2,5-oxadiazol-3-amine | IC50 | 200 nM |
| 4-(7-{[(3R)-3-aminopyrrolidin-1-yl]carbonyl}-1-ethyl-1H-imidazo[4,5-c]pyridin-2-yl)-1,2,5-oxadiazol-3-amine | IC50 | 331 nM |
| 4-[7-(3-aminopropoxy)-1-ethyl-4-phenyl-1H-imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amine | IC50 | 331 nM |
| 1-[4-(3-amino-1H-indazol-4-yl)phenyl]-3-(2-fluoro-5-methyl-phenyl)urea | KD | 450 nM |
| 4-[1-ethyl-7-(piperazin-1-ylcarbonyl)-1H-imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amine | IC50 | 501 nM |
| (3Z)-4-amino-5-fluoro-3-[5-(4-methylpiperazino)-1,3-dihydrobenzimidazol-2-ylidene]carbostyril | KD | 520 nM |
| 2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethyl-N-(piperidin-4-yl)-1H-imidazo[4,5-c]pyridine-7-carboxamide | IC50 | 562 nM |
| 2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethyl-N-(piperidin-3-yl)-1H-imidazo[4,5-c]pyridine-7-carboxamide | IC50 | 631 nM |
| (18S)-18-[(dimethylamino)methyl]-17-oxa-4,14,21-triazahexacyclo[19.6.1.1^{7,14}.0^{2,6}.0^{8,13}.0^{22,27}]nonacosa-1(28),2(6),7(29),8(13),9,11,22(27),23,25-nonaene-3,5-dione | KD | 700 nM |
| 1-[4-[(4-ethyl-1-piperazinyl)methyl]-3-(trifluoromethyl)phenyl]-3-[4-[[6-(methylamino)-4-pyrimidinyl]oxy]phenyl]urea | KD | 1400 nM |
| 5-[(Z)-(5-fluoranyl-2-oxidanylidene-1H-indol-3-ylidene)methyl]-2,4-dimethyl-N-[(2S)-3-morpholin-4-yl-2-oxidanyl-propyl]-1H-pyrrole-3-carboxamide | KD | 2600 nM |
| N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carboxamide | KD | 3500 nM |
ChEMBL bioactivities
332 potent at pChembl≥5 of 345 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 9.60 | IC50 | 0.2512 | nM | CHEMBL5177437 |
| 9.37 | IC50 | 0.426 | nM | STAUROSPORINE |
| 9.30 | IC50 | 0.5 | nM | CHEMBL188434 |
| 9.26 | IC50 | 0.553 | nM | STAUROSPORINE |
| 9.20 | IC50 | 0.631 | nM | CHEMBL5178687 |
| 9.10 | Ki | 0.7943 | nM | CHEMBL1970903 |
| 9.00 | IC50 | 1 | nM | CHEMBL521823 |
| 8.90 | Ki | 1.259 | nM | CHEMBL1991063 |
| 8.85 | IC50 | 1.4 | nM | CHEMBL415770 |
| 8.85 | IC50 | 1.4 | nM | STAUROSPORINE |
| 8.85 | IC50 | 1.42 | nM | STAUROSPORINE |
| 8.82 | IC50 | 1.5 | nM | CHEMBL185962 |
| 8.74 | IC50 | 1.8 | nM | CHEMBL185962 |
| 8.70 | IC50 | 2 | nM | CHEMBL188806 |
| 8.60 | IC50 | 2.5 | nM | CHEMBL186317 |
| 8.52 | IC50 | 3 | nM | CHEMBL189657 |
| 8.52 | IC50 | 3 | nM | CHEMBL189231 |
| 8.52 | IC50 | 3 | nM | CHEMBL426440 |
| 8.52 | IC50 | 3 | nM | CHEMBL523695 |
| 8.42 | IC50 | 3.79 | nM | CHEMBL3909070 |
| 8.40 | IC50 | 4 | nM | CHEMBL2347053 |
| 8.40 | IC50 | 4 | nM | CHEMBL187340 |
| 8.40 | IC50 | 4 | nM | CHEMBL188268 |
| 8.30 | IC50 | 5.012 | nM | CHEMBL5178687 |
| 8.30 | Ki | 5.012 | nM | CHEMBL1974870 |
| 8.30 | Ki | 5.012 | nM | CHEMBL1979883 |
| 8.28 | Kd | 5.3 | nM | CHEMBL2023845 |
| 8.22 | IC50 | 6 | nM | CHEMBL188433 |
| 8.20 | IC50 | 6.31 | nM | CHEMBL4792347 |
| 8.15 | IC50 | 7 | nM | CHEMBL360219 |
| 8.12 | IC50 | 7.58 | nM | CHEMBL3927587 |
| 8.10 | IC50 | 8 | nM | CHEMBL364413 |
| 8.10 | IC50 | 8 | nM | CHEMBL188434 |
| 8.10 | IC50 | 7.943 | nM | CHEMBL5278787 |
| 8.10 | IC50 | 8 | nM | BISINDOLYLMALEIMIDE IX |
| 8.10 | Ki | 7.943 | nM | CHEMBL1990254 |
| 8.05 | IC50 | 9 | nM | CHEMBL188620 |
| 8.05 | IC50 | 9 | nM | CHEMBL365832 |
| 8.00 | IC50 | 10 | nM | CHEMBL5190298 |
| 7.99 | IC50 | 10.3 | nM | CHEMBL3924878 |
| 7.96 | IC50 | 11 | nM | CHEMBL188433 |
| 7.96 | IC50 | 11 | nM | CHEMBL493067 |
| 7.92 | Kd | 12 | nM | CHEMBL2023841 |
| 7.92 | IC50 | 12 | nM | AT-13148 |
| 7.90 | IC50 | 12.7 | nM | CHEMBL3911801 |
| 7.90 | IC50 | 12.59 | nM | CHEMBL5184056 |
| 7.89 | IC50 | 13 | nM | CHEMBL188457 |
| 7.89 | IC50 | 13 | nM | CHEMBL363258 |
| 7.89 | IC50 | 13 | nM | CHEMBL494662 |
| 7.85 | IC50 | 14 | nM | CHEMBL1956071 |
PubChem BioAssay actives
206 with measured affinity, of 2474 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (E)-2-cyano-3-[3-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)phenyl]prop-2-enamide | 1893503: Inhibition of full-length N-terminal His-TEV-tagged inactive form of MSK1 (2 to 802 residues) (unknown origin) expressed in HEK293 cells using FAM-PSKPAATRKRRWSAPESR-NH2 as substrate preincubated for 1 hr followed by activation with ERK2 and substrate addition measured after 2 hrs by microfluidic chip based electrophoresis | ic50 | 0.0003 | uM |
| (2S,3R,4R,6R)-3-methoxy-2-methyl-4-(methylamino)-29-oxa-1,7,17-triazaoctacyclo[12.12.2.12,6.07,28.08,13.015,19.020,27.021,26]nonacosa-8,10,12,14,19,21,23,25,27-nonaen-16-one | 1715258: Inhibition of human MSK1 using GRPRTSSFAEG as substrate by [gamma-33P]-ATP assay | ic50 | 0.0004 | uM |
| 4-[1-ethyl-7-[(piperidin-4-ylamino)methyl]imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amine | 1933325: Inhibition of MSK-1 (unknown origin) | ic50 | 0.0005 | uM |
| (E)-2-cyano-N-(1-hydroxy-2-methylpropan-2-yl)-3-[3-(3,4,5-trimethoxyphenyl)-1H-indazol-5-yl]prop-2-enamide | 1893515: Inhibition of N-terminal His-Smt-tagged MSK1 C-terminal kinase domain (414 to 738 residues) (unknown origin) expressed in Escherichia coli BL21 (DE3) using FAM-PSKPAATRKRRWSAPESR-NH2 as substrate preincubated for 1 hr followed by substrate addition and measured after 70 mins by ADP-Glo kinase assay | ic50 | 0.0006 | uM |
| 4-[1-ethyl-7-(piperidin-4-ylmethoxy)imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amine | 1798494: In Vitro Kinase Inhibition Assay from Article 10.1021/jm8004527: “Identification of 4-(2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethyl-7-{[(3S)-3-piperidinylmethyl]oxy}-1H-imidazo[4,5-c]pyridin-4-yl)-2-methyl-3-butyn-2-ol (GSK690693), a novel inhibitor of AKT kinase.” | ic50 | 0.0010 | uM |
| 4-[1-ethyl-7-(piperazin-1-ylmethyl)imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amine | 240472: Inhibitory concentration against MSK-1 | ic50 | 0.0014 | uM |
| 4-(1-cyclopropylimidazo[4,5-c]pyridin-2-yl)-1,2,5-oxadiazol-3-amine | 240472: Inhibitory concentration against MSK-1 | ic50 | 0.0015 | uM |
| 4-(1-piperidin-3-ylimidazo[4,5-c]pyridin-2-yl)-1,2,5-oxadiazol-3-amine | 240472: Inhibitory concentration against MSK-1 | ic50 | 0.0020 | uM |
| 4-[1-[3-(aminomethyl)phenyl]imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amine | 240472: Inhibitory concentration against MSK-1 | ic50 | 0.0025 | uM |
| 4-(1-ethylimidazo[4,5-c]pyridin-2-yl)-1,2,5-oxadiazol-3-amine | 1933325: Inhibition of MSK-1 (unknown origin) | ic50 | 0.0030 | uM |
| [2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethylimidazo[4,5-c]pyridin-7-yl]-[(3R)-3-aminopyrrolidin-1-yl]methanone | 1798494: In Vitro Kinase Inhibition Assay from Article 10.1021/jm8004527: “Identification of 4-(2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethyl-7-{[(3S)-3-piperidinylmethyl]oxy}-1H-imidazo[4,5-c]pyridin-4-yl)-2-methyl-3-butyn-2-ol (GSK690693), a novel inhibitor of AKT kinase.” | ic50 | 0.0030 | uM |
| 4-(1-cyclohexylimidazo[4,5-c]pyridin-2-yl)-1,2,5-oxadiazol-3-amine | 240472: Inhibitory concentration against MSK-1 | ic50 | 0.0030 | uM |
| 4-[7-[(4-aminopiperidin-1-yl)methyl]-1-ethylimidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amine | 240472: Inhibitory concentration against MSK-1 | ic50 | 0.0030 | uM |
| 4-(4-chloro-1-ethylimidazo[4,5-c]pyridin-2-yl)-1,2,5-oxadiazol-3-amine | 240472: Inhibitory concentration against MSK-1 | ic50 | 0.0040 | uM |
| 4-[1-[4-(aminomethyl)phenyl]imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amine | 240472: Inhibitory concentration against MSK-1 | ic50 | 0.0040 | uM |
| (3Z)-3-[[5-(2-nitrophenyl)-1H-pyrazol-4-yl]methylidene]-1H-indol-2-one | 739297: Inhibition of MSK1 (unknown origin) after 10 mins by mobility shift assay | ic50 | 0.0040 | uM |
| 3-[[(2R)-6-amino-1-[[N-[(4R)-5-amino-4-[[(2R)-5-carbamimidamido-2-[[(2R)-5-carbamimidamido-2-[[(2R)-5-carbamimidamido-2-[[(2R)-5-carbamimidamido-2-[[(2R)-5-carbamimidamido-2-[6-[2-(isoquinolin-5-ylsulfonylamino)ethylamino]hexanoylamino]pentanoyl]amino]pentanoyl]amino]pentanoyl]amino]pentanoyl]amino]pentanoyl]amino]-5-oxopentyl]carbamimidoyl]amino]-1-oxohexan-2-yl]carbamoyl]-4-[3,6-bis(dimethylamino)-3H-xanthen-9-yl]benzoic acid | 659377: Binding affinity to His6-tagged recombinant human MSK1 by fluorescence anisotropy assay | kd | 0.0053 | uM |
| 4-(1-phenylimidazo[4,5-c]pyridin-2-yl)-1,2,5-oxadiazol-3-amine | 240472: Inhibitory concentration against MSK-1 | ic50 | 0.0060 | uM |
| N-cyclopropyl-4-methyl-3-[3-[2-[2-[2-(methylamino)ethoxy]phenyl]propan-2-ylamino]-2-oxopyrazin-1-yl]benzamide | 1721565: Inhibition of human MSK1 | ic50 | 0.0063 | uM |
| 4-[1-ethyl-7-(piperidin-1-ylmethyl)imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amine | 240472: Inhibitory concentration against MSK-1 | ic50 | 0.0070 | uM |
| N-[(1S)-2-amino-1-phenylethyl]-4-pyridin-4-ylbenzamide | 1948867: Inhibition of RPS6KA5 (unknown origin) | ic50 | 0.0079 | uM |
| 4-(1-ethyl-4-methylimidazo[4,5-c]pyridin-2-yl)-1,2,5-oxadiazol-3-amine | 240472: Inhibitory concentration against MSK-1 | ic50 | 0.0080 | uM |
| 3-[3-[4-(1-methylindol-3-yl)-2,5-dioxopyrrol-3-yl]indol-1-yl]propyl carbamimidothioate | 512454: Inhibition of His-tagged human MSK1 expressed in Sf9 cells | ic50 | 0.0080 | uM |
| 4-(7-bromo-1-ethylimidazo[4,5-c]pyridin-2-yl)-1,2,5-oxadiazol-3-amine | 240472: Inhibitory concentration against MSK-1 | ic50 | 0.0090 | uM |
| 4-[1-(1-aminopropan-2-yl)imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amine | 240472: Inhibitory concentration against MSK-1 | ic50 | 0.0090 | uM |
| 5-(4-chloropyrimidin-2-yl)pyrrolo[3,2-d]pyrimidine | 1893503: Inhibition of full-length N-terminal His-TEV-tagged inactive form of MSK1 (2 to 802 residues) (unknown origin) expressed in HEK293 cells using FAM-PSKPAATRKRRWSAPESR-NH2 as substrate preincubated for 1 hr followed by activation with ERK2 and substrate addition measured after 2 hrs by microfluidic chip based electrophoresis | ic50 | 0.0100 | uM |
| 2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethyl-N-piperidin-3-ylimidazo[4,5-c]pyridine-7-carboxamide | 1798494: In Vitro Kinase Inhibition Assay from Article 10.1021/jm8004527: “Identification of 4-(2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethyl-7-{[(3S)-3-piperidinylmethyl]oxy}-1H-imidazo[4,5-c]pyridin-4-yl)-2-methyl-3-butyn-2-ol (GSK690693), a novel inhibitor of AKT kinase.” | ic50 | 0.0110 | uM |
| N-[(2R)-1-[[6-[[(2R)-1-[[(2R)-1-[[(2R)-1-[[(2R)-1-[[(2R)-1-[[(2R)-1-[[(2R)-1-amino-6-[[2-[24-(hydroxy-methylidene-oxo-lambda6-sulfanyl)-5,5,27,27-tetramethyl-16-oxa-12-aza-20-azoniaheptacyclo[15.11.0.03,15.04,12.06,11.020,28.021,26]octacosa-1,3,6(11),7,9,20(28),21(26),22,24-nonaen-8-yl]acetyl]amino]-1-oxohexan-2-yl]amino]-5-carbamimidamido-1-oxopentan-2-yl]amino]-5-carbamimidamido-1-oxopentan-2-yl]amino]-5-carbamimidamido-1-oxopentan-2-yl]amino]-5-carbamimidamido-1-oxopentan-2-yl]amino]-5-carbamimidamido-1-oxopentan-2-yl]amino]-5-carbamimidamido-1-oxopentan-2-yl]amino]-6-oxohexyl]amino]-5-carbamimidamido-1-oxopentan-2-yl]-8-[2-(isoquinolin-5-ylsulfonylamino)ethylamino]octanamide | 659377: Binding affinity to His6-tagged recombinant human MSK1 by fluorescence anisotropy assay | kd | 0.0120 | uM |
| 6-chloro-2-pyrrolo[3,2-d]pyrimidin-5-ylpyridine-3-carbonitrile | 1893503: Inhibition of full-length N-terminal His-TEV-tagged inactive form of MSK1 (2 to 802 residues) (unknown origin) expressed in HEK293 cells using FAM-PSKPAATRKRRWSAPESR-NH2 as substrate preincubated for 1 hr followed by activation with ERK2 and substrate addition measured after 2 hrs by microfluidic chip based electrophoresis | ic50 | 0.0126 | uM |
| 2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethyl-N-piperidin-4-ylimidazo[4,5-c]pyridine-7-carboxamide | 1798494: In Vitro Kinase Inhibition Assay from Article 10.1021/jm8004527: “Identification of 4-(2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethyl-7-{[(3S)-3-piperidinylmethyl]oxy}-1H-imidazo[4,5-c]pyridin-4-yl)-2-methyl-3-butyn-2-ol (GSK690693), a novel inhibitor of AKT kinase.” | ic50 | 0.0130 | uM |
| 4-[1-(1-aminobutyl)imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amine | 240487: Inhibitory concentration exhibited towards MSK-1 | ic50 | 0.0130 | uM |
| 4-[1-(4-aminobutyl)imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amine | 240472: Inhibitory concentration against MSK-1 | ic50 | 0.0130 | uM |
| [2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethylimidazo[4,5-c]pyridin-7-yl]-[(3S)-3-aminopyrrolidin-1-yl]methanone | 649971: Inhibition of MSK1 | ic50 | 0.0140 | uM |
| 2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethyl-N-[2-(methylamino)ethyl]imidazo[4,5-c]pyridine-7-carboxamide | 1798494: In Vitro Kinase Inhibition Assay from Article 10.1021/jm8004527: “Identification of 4-(2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethyl-7-{[(3S)-3-piperidinylmethyl]oxy}-1H-imidazo[4,5-c]pyridin-4-yl)-2-methyl-3-butyn-2-ol (GSK690693), a novel inhibitor of AKT kinase.” | ic50 | 0.0150 | uM |
| 2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethylbenzimidazol-5-ol | 240487: Inhibitory concentration exhibited towards MSK-1 | ic50 | 0.0170 | uM |
| 4-(1-piperidin-4-ylimidazo[4,5-c]pyridin-2-yl)-1,2,5-oxadiazol-3-amine | 240472: Inhibitory concentration against MSK-1 | ic50 | 0.0170 | uM |
| Sunitinib | 508073: Binding affinity to RPS6KA2(Kin.Dom.1-N-terminal) | kd | 0.0170 | uM |
| 1-(5-chloro-2-fluoropyrimidin-4-yl)pyrrolo[3,2-b]pyridine | 1893503: Inhibition of full-length N-terminal His-TEV-tagged inactive form of MSK1 (2 to 802 residues) (unknown origin) expressed in HEK293 cells using FAM-PSKPAATRKRRWSAPESR-NH2 as substrate preincubated for 1 hr followed by activation with ERK2 and substrate addition measured after 2 hrs by microfluidic chip based electrophoresis | ic50 | 0.0199 | uM |
| 5-(2,5-dichloropyrimidin-4-yl)-7H-pyrrolo[2,3-d]pyrimidine | 1893503: Inhibition of full-length N-terminal His-TEV-tagged inactive form of MSK1 (2 to 802 residues) (unknown origin) expressed in HEK293 cells using FAM-PSKPAATRKRRWSAPESR-NH2 as substrate preincubated for 1 hr followed by activation with ERK2 and substrate addition measured after 2 hrs by microfluidic chip based electrophoresis | ic50 | 0.0199 | uM |
| 3-(1-ethylimidazo[4,5-c]pyridin-2-yl)pyrazin-2-amine | 1933325: Inhibition of MSK-1 (unknown origin) | ic50 | 0.0200 | uM |
| 4-(1-ethyl-7-piperidin-4-yloxyimidazo[4,5-c]pyridin-2-yl)-1,2,5-oxadiazol-3-amine | 1798494: In Vitro Kinase Inhibition Assay from Article 10.1021/jm8004527: “Identification of 4-(2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethyl-7-{[(3S)-3-piperidinylmethyl]oxy}-1H-imidazo[4,5-c]pyridin-4-yl)-2-methyl-3-butyn-2-ol (GSK690693), a novel inhibitor of AKT kinase.” | ic50 | 0.0210 | uM |
| 4-[1-(3-aminopropyl)imidazo[4,5-c]pyridin-2-yl]-1,2,5-oxadiazol-3-amine | 240472: Inhibitory concentration against MSK-1 | ic50 | 0.0220 | uM |
| N-[(2R)-1-[[(2R)-1-[[(2R)-1-[[(2R)-1-[[(2R)-1-[[(2R)-1-amino-5-(diaminomethylideneamino)-1-oxopentan-2-yl]amino]-5-(diaminomethylideneamino)-1-oxopentan-2-yl]amino]-5-(diaminomethylideneamino)-1-oxopentan-2-yl]amino]-5-(diaminomethylideneamino)-1-oxopentan-2-yl]amino]-5-(diaminomethylideneamino)-1-oxopentan-2-yl]amino]-5-(diaminomethylideneamino)-1-oxopentan-2-yl]-6-[2-(isoquinolin-5-ylsulfonylamino)ethylamino]hexanamide | 659387: Displacement of fluorescent-ARC-583/ARC-1042/ARC-1059 from His6-tagged recombinant human MSK1 by fluorescence anisotropy assay | kd | 0.0260 | uM |
| N-[2-hydroxy-3-[C-phenyl-N-[4-(piperidin-1-ylmethyl)phenyl]carbonimidoyl]-1H-indol-5-yl]ethanesulfonamide | 389045: Binding affinity to human MSK1 | kd | 0.0310 | uM |
| 5-(5-bromo-2-chloropyrimidin-4-yl)pyrrolo[3,2-d]pyrimidine | 1893503: Inhibition of full-length N-terminal His-TEV-tagged inactive form of MSK1 (2 to 802 residues) (unknown origin) expressed in HEK293 cells using FAM-PSKPAATRKRRWSAPESR-NH2 as substrate preincubated for 1 hr followed by activation with ERK2 and substrate addition measured after 2 hrs by microfluidic chip based electrophoresis | ic50 | 0.0316 | uM |
| 5-(2,5-dichloropyrimidin-4-yl)pyrrolo[3,2-d]pyrimidine | 1893503: Inhibition of full-length N-terminal His-TEV-tagged inactive form of MSK1 (2 to 802 residues) (unknown origin) expressed in HEK293 cells using FAM-PSKPAATRKRRWSAPESR-NH2 as substrate preincubated for 1 hr followed by activation with ERK2 and substrate addition measured after 2 hrs by microfluidic chip based electrophoresis | ic50 | 0.0316 | uM |
| 4-(1-ethyl-5-fluorobenzimidazol-2-yl)-1,2,5-oxadiazol-3-amine | 240487: Inhibitory concentration exhibited towards MSK-1 | ic50 | 0.0380 | uM |
| (15S,16S,18R)-16-hydroxy-16-(hydroxymethyl)-15-methyl-28-oxa-4,14,19-triazaoctacyclo[12.11.2.115,18.02,6.07,27.08,13.019,26.020,25]octacosa-1,6,8,10,12,20,22,24,26-nonaen-3-one | 624736: Binding constant for RPS6KA5(Kin.Dom.1-N-terminal) kinase domain | kd | 0.0420 | uM |
| [2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethylimidazo[4,5-c]pyridin-7-yl]-piperazin-1-ylmethanone | 1798494: In Vitro Kinase Inhibition Assay from Article 10.1021/jm8004527: “Identification of 4-(2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethyl-7-{[(3S)-3-piperidinylmethyl]oxy}-1H-imidazo[4,5-c]pyridin-4-yl)-2-methyl-3-butyn-2-ol (GSK690693), a novel inhibitor of AKT kinase.” | ic50 | 0.0470 | uM |
| N-[3-[2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethylimidazo[4,5-c]pyridin-6-yl]oxyphenyl]-4-(2-morpholin-4-ylethoxy)benzamide | 649971: Inhibition of MSK1 | ic50 | 0.0490 | uM |
CTD chemical–gene interactions
66 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | decreases expression, decreases methylation, affects cotreatment, increases expression | 6 |
| sodium arsenite | decreases reaction, increases activity, decreases expression, increases expression, affects cotreatment | 4 |
| trichostatin A | affects cotreatment, increases expression | 3 |
| N-(2-(4-bromocinnamylamino)ethyl)-5-isoquinolinesulfonamide | decreases activity | 2 |
| Air Pollutants | affects expression, increases abundance, decreases expression | 2 |
| FR900359 | affects phosphorylation | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | increases methylation | 1 |
| 2,5,2’,5’-tetrachlorobiphenyl | decreases expression | 1 |
| decabromobiphenyl ether | increases expression | 1 |
| dodecyldimethylamine oxide | increases expression | 1 |
| 11-nor-delta(9)-tetrahydrocannabinol-9-carboxylic acid | affects methylation, increases abundance | 1 |
| avermectin | decreases phosphorylation | 1 |
| potassium chromate(VI) | decreases expression, affects cotreatment | 1 |
| nickel sulfate | increases expression | 1 |
| 2-amino-3,8-dimethylimidazo(4,5-f)quinoxaline | increases expression | 1 |
| N-benzyloxycarbonylprolylprolinal | decreases expression | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| fasudil | decreases activity | 1 |
| ML 9 | decreases activity | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| ML 7 | decreases activity | 1 |
| SB 203580 | decreases reaction, increases activity, affects cotreatment | 1 |
| 2-(2-amino-3-methoxyphenyl)-4H-1-benzopyran-4-one | decreases reaction, increases phosphorylation | 1 |
| Y 27632 | decreases activity | 1 |
| U 0126 | decreases reaction, increases activity, affects cotreatment | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| obeticholic acid | decreases expression | 1 |
| Mangifera indica extract | decreases reaction, increases phosphorylation | 1 |
| ormosil | increases expression, affects binding | 1 |
ChEMBL screening assays
659 unique, capped per target: 656 binding, 2 admet, 1 functional
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3734183 | Binding | Inhibition of RPS6 kinase phosphorylation in cells (unknown origin) incubated for 6 hrs by Western blot based cell based method | 3-(aryl or heteroaryl) methyleneindolin-2-one derivatives as inhibitors of cancer stem cell pathway kinases for the treatment of cancer |
| CHEMBL4424897 | ADMET | Inhibition of human full-length N-terminal His-tagged p70S6K expressed in baculovirus infected Sf21 insect cells using CKRRRLASLR as substrate | Optimization of an azetidine series as inhibitors of colony stimulating factor-1 receptor (CSF-1R) Type II to lead to the clinical candidate JTE-952. — Bioorg Med Chem Lett |
| CHEMBL1963744 | Functional | PUBCHEM_BIOASSAY: Navigating the Kinome. (Class of assay: other) Panel member name: RPS6KA5 | PubChem BioAssay data set |
Cellosaurus cell lines
7 cell lines: 6 cancer cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D8UU | Ubigene HCT 116 RPS6KA5 KO | Cancer cell line | Male |
| CVCL_D9QY | Ubigene HEK293 RPS6KA5 KO | Transformed cell line | Female |
| CVCL_DX53 | HAP1 RPS6KA4 (-) RPS6KA5 (-) 1 | Cancer cell line | Male |
| CVCL_DX54 | HAP1 RPS6KA4 (-) RPS6KA5 (-) 2 | Cancer cell line | Male |
| CVCL_DX55 | HAP1 RPS6KA4 (-) RPS6KA5 (-) 3 | Cancer cell line | Male |
| CVCL_TJ66 | HAP1 RPS6KA5 (-) 1 | Cancer cell line | Male |
| CVCL_TJ67 | HAP1 RPS6KA5 (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): bone fracture, multiple sclerosis