RRM1

gene
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Summary

RRM1 (ribonucleotide reductase catalytic subunit M1, HGNC:10451) is a protein-coding gene on chromosome 11p15.4, encoding Ribonucleoside-diphosphate reductase large subunit (P23921). Provides the precursors necessary for DNA synthesis. In precision oncology, RRM1 Underexpression confers sensitivity to Gemcitabine + Cisplatin in Lung Non-small Cell Carcinoma (CIViC Level B); 8 further curated variant–drug associations are listed below. It is a common-essential gene (DepMap: required in 100.0% of cancer cell lines).

This gene encodes the large and catalytic subunit of ribonucleotide reductase, an enzyme essential for the conversion of ribonucleotides into deoxyribonucleotides. A pool of available deoxyribonucleotides is important for DNA replication during S phase of the cell cycle as well as multiple DNA repair processes. Alternative splicing results in multiple transcript variants.

Source: NCBI Gene 6240 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): progressive external ophthalmoplegia with mitochondrial dna deletions, autosomal recessive 6 (Moderate, GenCC) — +1 more curated relationship
  • GWAS associations: 12
  • Clinical variants (ClinVar): 84 total — 1 pathogenic, 1 likely-pathogenic
  • Phenotypes (HPO): 67
  • Druggable target: yes — 1 molecules with ChEMBL bioactivity
  • Precision-oncology evidence (CIViC): 9 curated variant–drug associations
  • Cancer dependency (DepMap): dependent in 100.0% of screened cell lines (common-essential)
  • MANE Select transcript: NM_001033

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:10451
Approved symbolRRM1
Nameribonucleotide reductase catalytic subunit M1
Location11p15.4
Locus typegene with protein product
StatusApproved
Ensembl geneENSG00000167325
Ensembl biotypeprotein_coding
OMIM180410
Entrez6240

Gene structure

Transcript identifiers

Ensembl transcripts: 16 — 4 protein_coding, 4 protein_coding_CDS_not_defined, 4 retained_intron, 4 nonsense_mediated_decay

ENST00000300738, ENST00000526304, ENST00000526350, ENST00000526865, ENST00000528442, ENST00000528470, ENST00000529109, ENST00000530368, ENST00000531591, ENST00000532170, ENST00000532710, ENST00000533349, ENST00000533495, ENST00000534285, ENST00000854928, ENST00000854929

RefSeq mRNA: 4 — MANE Select: NM_001033 NM_001033, NM_001318064, NM_001318065, NM_001330193

CCDS: CCDS7750, CCDS81547

Canonical transcript exons

ENST00000300738 — 19 exons

ExonStartEnd
ENSE0000183807041381954138932
ENSE0000215309840947994095031
ENSE0000349361041074354107535
ENSE0000353938041116014111640
ENSE0000356019941060464106223
ENSE0000356090841096444109703
ENSE0000356149541335634133658
ENSE0000358007541198454119928
ENSE0000358954741019934102081
ENSE0000359449541290744129150
ENSE0000359604241350824135270
ENSE0000361723741119004112062
ENSE0000363397341231834123384
ENSE0000363754241221414122220
ENSE0000363905041216044121765
ENSE0000363963441270354127256
ENSE0000366334241183204118461
ENSE0000366698541322864132421
ENSE0000368624041266844126833

Expression profiles

Bgee: expression breadth ubiquitous, 296 present calls, max score 98.29.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 64.2022 / max 1044.0370, expressed in 1813 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter IDTPM avgSamples expressed
11276443.63911798
11276319.17881779
1127620.8833551
1127670.5011265

Top tissues by expression

299 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
ventricular zoneUBERON:000305398.29gold quality
ganglionic eminenceUBERON:000402397.89gold quality
cervix squamous epitheliumUBERON:000692297.42gold quality
embryoUBERON:000092297.04gold quality
penisUBERON:000098996.95gold quality
nippleUBERON:000203096.73gold quality
tongue squamous epitheliumUBERON:000691996.48gold quality
trabecular bone tissueUBERON:000248396.40gold quality
skin of hipUBERON:000155496.34gold quality
upper leg skinUBERON:000426296.09gold quality
pharyngeal mucosaUBERON:000035595.97gold quality
mammalian vulvaUBERON:000099795.85gold quality
calcaneal tendonUBERON:000370195.62gold quality
hair follicleUBERON:000207395.32gold quality
gingival epitheliumUBERON:000194995.19gold quality
tendonUBERON:000004395.07gold quality
gingivaUBERON:000182895.06gold quality
epithelium of nasopharynxUBERON:000195194.87gold quality
nasopharynxUBERON:000172894.85gold quality
stromal cell of endometriumCL:000225594.71gold quality
superior surface of tongueUBERON:000737194.34gold quality
oral cavityUBERON:000016794.33gold quality
squamous epitheliumUBERON:000691494.31gold quality
bone marrowUBERON:000237194.21gold quality
pylorusUBERON:000116693.84gold quality
cervix epitheliumUBERON:000480193.76gold quality
amniotic fluidUBERON:000017393.61gold quality
tongueUBERON:000172393.55gold quality
adrenal tissueUBERON:001830393.42gold quality
secondary oocyteCL:000065593.32gold quality

Single-cell (SCXA)

Detected in 13 experiment(s), a significant marker in 7.

ExperimentMarker?Max mean expression
E-MTAB-6075yes320.44
E-HCAD-10yes34.87
E-CURD-122yes22.38
E-ANND-3yes8.49
E-MTAB-6678yes7.72
E-MTAB-10553yes7.01
E-MTAB-9801yes3.56
E-GEOD-99795no577.83
E-CURD-10no401.75
E-MTAB-6058no381.82
E-GEOD-76312no287.43
E-MTAB-7037no212.73
E-CURD-88no3.64

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): E2F1, E2F4, HR, KAT5, SP1, TFDP1, THAP1, TP53

miRNA regulators (miRDB)

21 targeting RRM1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-551B-5P99.9671.283493
HSA-MIR-101-3P99.9475.032230
HSA-MIR-1236-3P99.9468.041695
HSA-MIR-205-3P99.9269.923165
HSA-MIR-568099.9169.833421
HSA-MIR-442299.7272.072908
HSA-MIR-33A-3P99.7070.273362
HSA-MIR-432899.5771.064094
HSA-MIR-3942-3P99.5769.032854
HSA-MIR-216A-5P99.5068.021288
HSA-MIR-513C-5P99.5068.421730
HSA-MIR-514B-5P99.5068.191766
HSA-MIR-488-5P99.2868.12821
HSA-MIR-470599.1069.101091
HSA-MIR-605-5P98.7968.241161
HSA-MIR-338-3P98.1467.381137
HSA-MIR-10526-3P97.8664.971342
HSA-MIR-4733-5P97.7567.44866
HSA-MIR-6894-3P96.7365.64798
HSA-MIR-6782-5P96.4564.42612
HSA-MIR-3619-3P95.5965.99428

Functional genomics

DepMap (CRISPR cell-line fitness): dependent in 100.0% of screened cell lines, common-essential.

Literature-anchored findings (GeneRIF, showing 40)

  • overexpression of RRM1 in human and mouse lung cancer cell lines induced PTEN expression, reduced phosphorylation of focal adhesion kinase (FAK), suppressed migration, invasion, and metastasis formation, and increased survival in an animal model. (PMID:12687015)
  • RRM1 levels influenced time to progression (P=0.05) and even more so, survival (P=0.0028) in the gemcitabine/cisplatin arm (PMID:12789263)
  • Susceptibility differences to RR inhibitors between hRRM1 and hRRM2 may lead to a new direction in drug design for human cancer treatment. (PMID:14729598)
  • The level of RRM1 may affect gemcitabine response in non-small cell lung cancer. Furthermore, RRM1 may serve as a biomarker for gemcitabine response. (PMID:15172981)
  • the binding site on RRM1 demonstrated higher affinity for RRM2 subunit than for p53R2 subunit (PMID:16376858)
  • overexpressed during the S phase of the cell cycle compared with the G0/1 phase (PMID:16476973)
  • Motexafin gadolinium induces enzymatic generation of reactive oxygen species by thioredoxin reductase and inhibits ribonucleotide reductase (PMID:16481328)
  • results strongly suggest that tumoral RRM1 expression is a major predictor of disease response to gemcitabine/platinum chemotherapy (PMID:16966686)
  • RRM1 could play a role in the prediction of patient outcome, and draw attention to the fact that response to gemcitabine. (PMID:17064812)
  • RRM1 RNA expression has a role in acquired resistance to gemcitabine (PMID:17065054)
  • RRM1 should be a key molecule in gemcitabine resistance in human pancreatic cancer. (PMID:17131328)
  • RRM1 haplotype showed an association with susceptibility to gemcitabine monotherapy in breast cancer patients. (PMID:17602053)
  • Ribonucleotide reductase subunit M1(RRM1) mRNA expression in lung adenocarcinoma is associated with clinical outcome of docetaxel/gemcitabine therapy. (PMID:18414411)
  • significant differences in response rates to gemcitabine-based chemotherapy according to the allelotypes of the RRM1 promoter sequence (PMID:18483375)
  • Significantly higher RRM1 mRNA expression was found in SCLC compared with NSCLC. There was no correlation between mRNA expression of the RRM1 gene and chemosensitivity to cisplatin, carboplatin or gemcitabine. (PMID:18494946)
  • Expression of RRM1 is associated with chemoresistance marker to gemcitabine in biliary tract carcinoma (PMID:18636187)
  • The mRNA expression of RRM1 is potentially a useful tool for selecting NSCLC patients for individualized chemotherapy (PMID:19002265)
  • genetic polymorphisms is associated with sensitivity to platin-based chemotherapy in non-small cell lung cancer patients (PMID:19304340)
  • Data show that the combination of RRM1 and ERCC1 expression is prognostic in pancreatic cancer patients after a complete resection. (PMID:19543324)
  • patients with advanced NSCLC treated with chemotherapy with gemcitabine and cisplatin appear to have a poor outcome if the tumor express elevated levels of RRM1 gene but surgical resection shows better survival. (PMID:19552012)
  • Esophageal squamous cell carcinoma cells with a lower level of RRM1 expression are more sensitive to gemcitabine. (PMID:20021860)
  • RRM1 suppression is an important step in increasing Gemcitabine efficacy (PMID:20043067)
  • Tip60-dependent recruitment of RNR plays an essential role in dNTP supply for DNA repair (PMID:20159953)
  • Compared with their parental cells, the expressions of CDA, RRM1, PTEN and ERCC1 increase in human gemcitabine-resistant non-small cell lung cancer cell lines. (PMID:20211060)
  • RRM1 single nucleotide polymorphism is not associated with non-small cell lung cancer patients after gemcitabine-based chemotherapy. (PMID:20226083)
  • ERCC1, RRM1 and BRCA1 are promising predictive and prognostic biomarkers in advanced non-small cell lung cancer. (PMID:20467918)
  • RRM1, particularly in protein, level is a reliable marker for gemcitabine resistance in biliary tract carcinoma. (PMID:20811706)
  • In postoperative NSCLC patients who are receiving adjuvant chemotherapy, patients with high expression of RRM1 tend to be resistant to gemcitabine. (PMID:20868593)
  • RRM1 -37A>C polymorphism may represent a useful biomarker to select mCRC patients most likely to benefit from gemcitabine-based salvage therapy. (PMID:21220199)
  • M1 (RRM1) expression in resected pancreatic cancer is not associated with OS or Pfs. (PMID:21264835)
  • The study reports the first X-ray structures of human RR1 bound to TTP alone, dATP alone, TTP-GDP, TTP-ATP, and TTP-dATP. (PMID:21336276)
  • RRM1 has a role in response to gemcitabine plus platinum therapy in advanced non-small-cell lung cancer (PMID:21370501)
  • Cases with EGFR overexpression showed high expression of RRM1 and BRCA1 (PMID:21394302)
  • The RRM1 2464 A/G, RRM1 37 C/C and RRM1 524 T/T alleles were associated with statistically significant superior progression free survival in pancreatic cancer patients receiving combination gemcitabine and sorafenib (PMID:21424698)
  • Data suggest ribonucleotide reductase A site binding with inhibitor. (PMID:21628579)
  • Single-nucleotide polymorphisms in RRM1 gene is associated with treatment response in non-small cell lung cancer. (PMID:21642870)
  • RRM1 polymorphisms as well as haplotypes showed an association with gemcitabine treatment efficacy and toxicity. (PMID:22134350)
  • RRM1 levels in pancreatic ductal adenocarcinoma did not predict survival times in patients treated with adjuvant gemcitabine. (PMID:22705007)
  • The expression of RRMI and ERCC1 genes in tumor tissues and RRM1 in peripheral blood lymphocytes is closely correlated with the response to chemotherapy and prognosis of patients with advanced non-small cell lung cancer. (PMID:23086647)
  • We assessed the relation of mRNA levels of ERCC1, RRM1, and BRCA1 to survival in surgically-resected tumor tissues from patients who underwent adjuvant chemotherapy (PMID:23155271)

Cross-species orthologs

5 orthologs

OrganismSymbolGene ID
danio_reriorrm1ENSDARG00000014017
mus_musculusRrm1ENSMUSG00000030978
rattus_norvegicusRrm1ENSRNOG00000045752
drosophila_melanogasterRnrLFBGN0011703
caenorhabditis_elegansWBGENE00004391

Protein

Protein identifiers

Ribonucleoside-diphosphate reductase large subunitP23921 (reviewed: P23921)

Alternative names: Ribonucleoside-diphosphate reductase subunit M1, Ribonucleotide reductase large subunit

All UniProt accessions (6): P23921, E9PJ62, E9PL69, E9PP77, E9PRY9, H0YCY7

UniProt curated annotations — full annotation on UniProt →

Function. Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.

Subunit / interactions. Heterodimer of a large and a small subunit. Heterodimer with small subunit RRM2 or RRM2B. The heterodimer with RRM2 has higher catalytic activity than the heterodimer with RRM2B. Interacts with AHCYL1 which inhibits its activity.

Subcellular location. Cytoplasm.

Disease relevance. Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 6 (PEOB6) [MIM:620647] A form of progressive external ophthalmoplegia, a mitochondrial myopathy characterized by progressive paralysis of the levator palpebrae, orbicularis oculi, and extraocular muscles. Ragged red fibers are seen on muscle biopsy. The disease may be caused by variants affecting the gene represented in this entry.

Activity regulation. Under complex allosteric control mediated by deoxynucleoside triphosphates and ATP binding to separate specificity and activation sites on the M1 subunit. The type of nucleotide bound at the specificity site determines substrate preference. It seems probable that ATP makes the enzyme reduce CDP and UDP, dGTP favors ADP reduction and dTTP favors GDP reduction. Stimulated by ATP and inhibited by dATP binding to the activity site, the dATP inhibition is mediated by AHCYL1 which stabilizes dATP in the site.

Miscellaneous. Two distinct regulatory sites have been defined: the specificity site, which controls substrate specificity, and the activity site which regulates overall catalytic activity. A substrate-binding catalytic site, located on M1, is formed only in the presence of the second subunit M2. The level of the enzyme activity is closely correlated with the growth rate of a cell and appears to vary with the cell cycle.

Similarity. Belongs to the ribonucleoside diphosphate reductase large chain family.

RefSeq proteins (4): NP_001024, NP_001304993, NP_001304994, NP_001317122 (=MANE)

Domains & families (InterPro)

IDNameType
IPR000788RNR_lg_CDomain
IPR005144ATP-cone_domDomain
IPR008926RNR_R1-su_NHomologous_superfamily
IPR013346NrdE_NrdA_CDomain
IPR013509RNR_lsu_NDomain
IPR039718Rrm1Family

Pfam: PF00317, PF02867, PF03477

Enzyme classification (BRENDA):

  • EC 1.17.4.1 — ribonucleoside-diphosphate reductase (BRENDA: 56 organisms, 130 substrates, 474 inhibitors, 39 Km, 9 kcat entries)

Substrate kinetics (BRENDA)

10 substrates with measured Km, best-characterized 10. Km ranges are aggregated across organisms/conditions.

SubstrateKm (mM)Measurements
CDP0.0005–0.3114
ADP0.0078–0.36
GDP0.0012–0.374
UDP0.08–1.24
ATP0.071
DATP0.0031
DTTP0.00151
GLUTAREDOXIN0.00011
GLUTAREDOXIN 10.0061
THIOREDOXIN0.0031

Catalyzed reactions (Rhea), 1 shown:

  • a 2’-deoxyribonucleoside 5’-diphosphate + [thioredoxin]-disulfide + H2O = a ribonucleoside 5’-diphosphate + [thioredoxin]-dithiol (RHEA:23252)

UniProt features (114 total): helix 41, strand 31, binding site 13, turn 7, site 6, sequence variant 5, active site 3, modified residue 3, chain 1, domain 1, disulfide bond 1, mutagenesis site 1, sequence conflict 1

Structure

Experimental structures (PDB)

12 structures.

PDBMethodResolution (Å)
6L3RX-RAY DIFFRACTION2
6L7LX-RAY DIFFRACTION2.17
2WGHX-RAY DIFFRACTION2.3
3HNCX-RAY DIFFRACTION2.41
6LKMX-RAY DIFFRACTION2.55
5TUSX-RAY DIFFRACTION2.66
3HNEX-RAY DIFFRACTION3.11
3HNFX-RAY DIFFRACTION3.16
3HNDX-RAY DIFFRACTION3.21
6AUIELECTRON MICROSCOPY3.3
4X3VX-RAY DIFFRACTION3.7
5D1YX-RAY DIFFRACTION9.01

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P23921-F192.430.80

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Catalytic / active sites (9): 218 (important for hydrogen atom transfer); 444 (important for hydrogen atom transfer); 427 (proton acceptor); 737 (important for electron transfer); 738 (important for electron transfer); 787 (interacts with thioredoxin/glutaredoxin); 790 (interacts with thioredoxin/glutaredoxin); 429 (cysteine radical intermediate); 431 (proton acceptor)

Ligand- & substrate-binding residues (13): 217; 226–228; 243; 256; 263–264; 427; 431; 604–607; 5–6; 11–17; 53; 57

Post-translational modifications (3): 17, 376, 751

Disulfide bonds (1): 218–444

Mutagenesis-validated functional residues (1):

PositionPhenotype
57severely decreases interaction with ahcyl1 in the presence of datp.

Function

Pathways and Gene Ontology

Reactome pathways

1 pathways

IDPathway
R-HSA-499943Interconversion of nucleotide di- and triphosphates

MSigDB gene sets: 0 (showing top):

GO Biological Process (15): DNA synthesis involved in DNA repair (GO:0000731), pyrimidine nucleobase metabolic process (GO:0006206), mitochondrial DNA replication (GO:0006264), DNA repair (GO:0006281), male gonad development (GO:0008584), ribonucleoside diphosphate metabolic process (GO:0009185), deoxyribonucleotide biosynthetic process (GO:0009263), 2’-deoxyribonucleotide biosynthetic process (GO:0009265), response to ionizing radiation (GO:0010212), positive regulation of G2/M transition of mitotic cell cycle (GO:0010971), cell proliferation in forebrain (GO:0021846), protein heterotetramerization (GO:0051290), retina development in camera-type eye (GO:0060041), positive regulation of G0 to G1 transition (GO:0070318), positive regulation of G1/S transition of mitotic cell cycle (GO:1900087)

GO Molecular Function (10): ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor (GO:0004748), ATP binding (GO:0005524), identical protein binding (GO:0042802), ribonucleoside-diphosphate reductase activity (GO:0061731), disordered domain specific binding (GO:0097718), nucleotide binding (GO:0000166), catalytic activity (GO:0003824), protein binding (GO:0005515), oxidoreductase activity (GO:0016491), purine nucleotide binding (GO:0017076)

GO Cellular Component (10): nuclear envelope (GO:0005635), mitochondrion (GO:0005739), cytosol (GO:0005829), ribonucleoside-diphosphate reductase complex (GO:0005971), centriolar satellite (GO:0034451), ciliary basal body (GO:0036064), neuronal cell body (GO:0043025), cytoplasm (GO:0005737), membrane (GO:0016020), cell projection (GO:0042995)

Reactome top-level categories

Rollup of top-1 pathways:

CategoryPathways
Metabolism of nucleotides1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cellular anatomical structure5
positive regulation of mitotic cell cycle phase transition2
cytoplasm2
DNA repair1
DNA biosynthetic process1
nucleobase metabolic process1
pyrimidine-containing compound metabolic process1
mitochondrion1
DNA-templated DNA replication1
mitochondrial DNA metabolic process1
DNA metabolic process1
DNA damage response1
gonad development1
development of primary male sexual characteristics1
nucleoside diphosphate metabolic process1
biosynthetic process1
deoxyribonucleotide metabolic process1
nucleotide biosynthetic process1
2’-deoxyribonucleotide metabolic process1
deoxyribose phosphate biosynthetic process1
response to radiation1
G2/M transition of mitotic cell cycle1
regulation of G2/M transition of mitotic cell cycle1
positive regulation of cell cycle G2/M phase transition1
forebrain development1
neural precursor cell proliferation1
protein tetramerization1
protein heterooligomerization1
camera-type eye development1
anatomical structure development1
G0 to G1 transition1
regulation of G0 to G1 transition1
positive regulation of cell cycle process1
G1/S transition of mitotic cell cycle1
positive regulation of cell cycle G1/S phase transition1
regulation of G1/S transition of mitotic cell cycle1
ribonucleoside-diphosphate reductase activity1
adenyl ribonucleotide binding1
purine ribonucleoside triphosphate binding1
protein binding1

Protein interactions and networks

STRING

4721 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
RRM1RRM2P31350999
RRM1RRM2BQ7LG56996
RRM1ESRP1Q6NXG1831
RRM1TARDBPQ13148821
RRM1ESRP2Q9H6T0820
RRM1EIF4G1Q04637802
RRM1ERCC1P07992773
RRM1TYMSP04818773
RRM1TOP2AP11388771
RRM1CELF6Q96J87763
RRM1DCKP27707753
RRM1THAP1Q9NVV9745
RRM1HNRNPDLO14979735
RRM1PABPC1P11940729
RRM1CELF3Q5SZQ8719

IntAct

76 interactions, top by confidence:

ABTypeScore
HRASRAF1psi-mi:“MI:0914”(association)0.980
RRM1RRM2psi-mi:“MI:0407”(direct interaction)0.850
RRM2RRM1psi-mi:“MI:0914”(association)0.850
RRM2RRM1psi-mi:“MI:0915”(physical association)0.850
TRIM33TRIM24psi-mi:“MI:0914”(association)0.790
RRM1RRM1psi-mi:“MI:0915”(physical association)0.780
RRM1RRM1psi-mi:“MI:0407”(direct interaction)0.780
CFTRESYT2psi-mi:“MI:2364”(proximity)0.710
PFDN2POLR3Apsi-mi:“MI:0914”(association)0.670
RRM1ZNF655psi-mi:“MI:0915”(physical association)0.560
RRM1GLRX3psi-mi:“MI:0914”(association)0.530
KAT5YEATS4psi-mi:“MI:0914”(association)0.530
GPR37ATE1psi-mi:“MI:0914”(association)0.530
PPP1CCRRM1psi-mi:“MI:0915”(physical association)0.370
OTUB1psi-mi:“MI:0914”(association)0.350
OTUB1EPM2Apsi-mi:“MI:0914”(association)0.350
Cdca8NAP1L1psi-mi:“MI:0914”(association)0.350
Ubr5SFI1psi-mi:“MI:0914”(association)0.350
RNASEH2BSAP18psi-mi:“MI:0914”(association)0.350
Cdkn2aipSF1psi-mi:“MI:0914”(association)0.350
HSCBRBP5psi-mi:“MI:0914”(association)0.350

BioGRID (188): RRM1 (Two-hybrid), RRM1 (Affinity Capture-MS), RRM2 (Co-fractionation), RRM1 (Affinity Capture-MS), RRM1 (Synthetic Growth Defect), RRM1 (Proximity Label-MS), RRM1 (Proximity Label-MS), RRM1 (Affinity Capture-MS), RRM1 (Affinity Capture-MS), RRM1 (Affinity Capture-MS), RRM1 (Affinity Capture-MS), RRM1 (Affinity Capture-MS), RRM1 (Affinity Capture-MS), RRM1 (Affinity Capture-MS), RRM1 (Affinity Capture-MS)

ESM2 similar proteins: A0A7H0DN52, A6Q367, O15909, O55716, O61065, O83972, P07071, P07742, P0A5W9, P0C8H8, P0C8H9, P0CG99, P0CH00, P0DSV1, P0DSV2, P12848, P20503, P21524, P21672, P23921, P26685, P32282, P36602, P42491, P43752, P43754, P48591, P50620, P50647, P50648, P55982, P57276, P74240, P79732, P9WH75, Q03604, Q196Z5, Q54Q71, Q5R919, Q6GZT8

Diamond homologs: A0A7H0DN52, E7FHX6, O15909, O55716, O61065, O66503, O83972, O84834, P07742, P08543, P09853, P0C8H7, P0C8H8, P0C8H9, P0DSV1, P0DSV2, P12848, P20503, P21524, P21672, P23921, P26685, P28846, P36602, P42491, P48591, P50642, P50643, P50647, P50648, P55982, P79732, P89462, Q03604, Q54Q71, Q5R919, Q6R7H4, Q6UDJ2, Q76RD8, Q77MS1

SIGNOR signaling

9 interactions.

AEffectBMechanism
E2F1“up-regulates quantity by expression”RRM1“transcriptional regulation”
TFDP1“up-regulates quantity by expression”RRM1“transcriptional regulation”
clofarabine“down-regulates activity”RRM1“chemical inhibition”
RRM1“form complex”“Ribonucleotide reductase”binding
RRM2B“up-regulates activity”RRM1binding
CyclinA2/CDK2“up-regulates activity”RRM1phosphorylation
mTORC2“up-regulates activity”RRM1phosphorylation
gemcitabine“down-regulates activity”RRM1“chemical inhibition”
(2R,3S,4S,5R)-2-(6-amino-2-fluoro-9-purinyl)-5-(hydroxymethyl)oxolane-3,4-diol“down-regulates activity”RRM1“chemical inhibition”

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 82 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

GO biological processes:

GO termPartnersFoldFDR
double-strand break repair513.7×6e-03
MAPK cascade612.4×6e-03
DNA damage response85.8×7e-03

Disease & clinical

Cancer significance

Clinical variants and AI predictions

ClinVar

84 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic1
Likely pathogenic1
Uncertain significance58
Likely benign1
Benign2

Top pathogenic / likely-pathogenic (2)

Variant IDHGVSClassification
2664486NM_001033.5(RRM1):c.1141C>T (p.Arg381Cys)Pathogenic
2444243NM_001033.5(RRM1):c.1142G>A (p.Arg381His)Likely pathogenic

SpliceAI

2685 predictions. Top by Δscore:

VariantEffectΔscore
11:4096082:GTGGT:Gdonor_gain1.0000
11:4101988:TTTA:Tacceptor_loss1.0000
11:4101989:TTAG:Tacceptor_loss1.0000
11:4101990:TA:Tacceptor_loss1.0000
11:4101991:A:AGacceptor_gain1.0000
11:4101991:AGA:Aacceptor_loss1.0000
11:4101991:AGAT:Aacceptor_gain1.0000
11:4101992:G:GGacceptor_gain1.0000
11:4101992:GA:Gacceptor_gain1.0000
11:4101992:GAT:Gacceptor_gain1.0000
11:4101992:GATG:Gacceptor_gain1.0000
11:4102077:ATCCT:Adonor_gain1.0000
11:4102078:TCCT:Tdonor_gain1.0000
11:4102079:CCT:Cdonor_gain1.0000
11:4102080:CT:Cdonor_gain1.0000
11:4102081:TGTA:Tdonor_loss1.0000
11:4102082:GTAA:Gdonor_gain1.0000
11:4102083:T:Gdonor_loss1.0000
11:4102086:G:GGdonor_gain1.0000
11:4106041:T:TAacceptor_gain1.0000
11:4106044:A:AGacceptor_gain1.0000
11:4106044:AG:Aacceptor_gain1.0000
11:4106045:G:GAacceptor_gain1.0000
11:4106045:GG:Gacceptor_gain1.0000
11:4106045:GGC:Gacceptor_gain1.0000
11:4106045:GGCT:Gacceptor_gain1.0000
11:4106045:GGCTC:Gacceptor_gain1.0000
11:4106211:A:Tdonor_gain1.0000
11:4106221:GTG:Gdonor_gain1.0000
11:4106222:TG:Tdonor_gain1.0000

AlphaMissense

5257 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
11:4118324:T:CF219L1.000
11:4118326:T:AF219L1.000
11:4118326:T:GF219L1.000
11:4119900:C:AA283D1.000
11:4121610:G:TG295W1.000
11:4121611:G:AG295E1.000
11:4122144:T:AW348R1.000
11:4122144:T:CW348R1.000
11:4123345:C:AN427K1.000
11:4123345:C:GN427K1.000
11:4132330:C:AA605D1.000
11:4102035:G:CR21P0.999
11:4106104:T:CL56P0.999
11:4106106:G:CD57H0.999
11:4106107:A:TD57V0.999
11:4106118:G:CA61P0.999
11:4106119:C:AA61D0.999
11:4106170:C:AA78E0.999
11:4106176:G:CR80T0.999
11:4106176:G:TR80M0.999
11:4106187:T:CS84P0.999
11:4106201:A:CK88N0.999
11:4106201:A:TK88N0.999
11:4107450:T:CL101P0.999
11:4109672:G:CR139P0.999
11:4109674:G:CD140H0.999
11:4109675:A:TD140V0.999
11:4109696:G:AG147D0.999
11:4111605:T:CL151P0.999
11:4111611:G:CR153P0.999

dbSNP variants (sampled 300 via entrez): RS1000039596 (11:4120662 C>T), RS1000065003 (11:4097113 C>T), RS1000149197 (11:4102435 A>T), RS1000244192 (11:4102274 T>A,C), RS1000260922 (11:4108530 G>A), RS1000292076 (11:4107607 T>G), RS1000367321 (11:4094563 G>A), RS1000466880 (11:4100817 A>T), RS1000512395 (11:4133131 G>A,C), RS1000524242 (11:4098891 G>A), RS1000559180 (11:4132056 G>C), RS1000641225 (11:4107856 T>A), RS1000698726 (11:4095779 G>T), RS1000887073 (11:4113002 A>G), RS1000952021 (11:4119252 T>C)

Disease associations

OMIM: gene MIM:180410 | disease phenotypes: MIM:620647

GenCC curated gene-disease

DiseaseClassificationInheritance
progressive external ophthalmoplegia with mitochondrial dna deletions, autosomal recessive 6ModerateAutosomal recessive
progressive external ophthalmoplegia with mitochondrial DNA deletionsLimitedAutosomal dominant

Mondo (2): progressive external ophthalmoplegia with mitochondrial dna deletions, autosomal recessive 6 (MONDO:0957993), progressive external ophthalmoplegia with mitochondrial DNA deletions (MONDO:0000090)

Orphanet (0):

HPO phenotypes

67 total (30 of 67 shown, HPO-id order):

HPOTerm
HP:0000006Autosomal dominant inheritance
HP:0000007Autosomal recessive inheritance
HP:0000298Mask-like facies
HP:0000365Hearing impairment
HP:0000407Sensorineural hearing impairment
HP:0000479Abnormal retinal morphology
HP:0000505Visual impairment
HP:0000508Ptosis
HP:0000544External ophthalmoplegia
HP:0000602Ophthalmoplegia
HP:0000648Optic atrophy
HP:0000716Depression
HP:0001249Intellectual disability
HP:0001251Ataxia
HP:0001265Hyporeflexia
HP:0001272Cerebellar atrophy
HP:0001284Areflexia
HP:0001621Weak voice
HP:0001638Cardiomyopathy
HP:0002013Vomiting
HP:0002015Dysphagia
HP:0002018Nausea
HP:0002059Cerebral atrophy
HP:0002067Bradykinesia
HP:0002345Action tremor
HP:0002362Shuffling gait
HP:0002396Cogwheel rigidity
HP:0002500Abnormal cerebral white matter morphology
HP:0002505Loss of ambulation
HP:0002548Parkinsonism with favorable response to dopaminergic medication

GWAS associations

12 associations (top):

StudyTraitp-value
GCST004621_20Red cell distribution width3.000000e-14
GCST005993_50Mean corpuscular hemoglobin5.000000e-09
GCST006804_134Red cell distribution width3.000000e-10
GCST010725_20Malaria4.000000e-69
GCST010725_33Malaria2.000000e-67
GCST010725_51Malaria1.000000e-55
GCST90002390_502Mean corpuscular hemoglobin6.000000e-34
GCST90002392_555Mean corpuscular volume2.000000e-39
GCST90002396_452Mean reticulocyte volume2.000000e-27
GCST90002397_558Mean spheric corpuscular volume2.000000e-24
GCST90002397_559Mean spheric corpuscular volume1.000000e-12
GCST90002404_504Red cell distribution width6.000000e-14

EFO canonical traits (3, from GWAS)

EFO IDTrait name
EFO:0009188Red cell distribution width
EFO:0004527mean corpuscular hemoglobin
EFO:0010701mean reticulocyte volume

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (3): CHEMBL1830 (SINGLE PROTEIN), CHEMBL2095215 (PROTEIN COMPLEX GROUP), CHEMBL3301398 (PROTEIN COMPLEX)

Molecules with ChEMBL bioactivity

1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 4,524 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL231616TRIAPINE34,524

Clinical evidence (CIViC)

Drug × variant × indication: 9 predictive associations from 11 curated evidence items; also 1 prognostic.

VariantTherapyIndicationEffectLevelCIViC
RRM1 UnderexpressionGemcitabine + CisplatinLung Non-small Cell CarcinomaSensitivity/ResponseCIViC BEID2905 +1
RRM1 UnderexpressionGemcitabinePancreatic CancerSensitivity/ResponseCIViC BEID5506 +1
RRM1 UnderexpressionCarboplatin + GemcitabineLung Non-small Cell CarcinomaSensitivity/ResponseCIViC BEID10143
RRM1 UnderexpressionPaclitaxel + Gemcitabine + CisplatinLung Non-small Cell CarcinomaSensitivity/ResponseCIViC BEID12044
RRM1 UnderexpressionGemcitabineLung Non-small Cell CarcinomaSensitivity/ResponseCIViC BEID5530
RRM1 UnderexpressionPaclitaxel + Vinorelbine + GemcitabineLung Non-small Cell CarcinomaSensitivity/ResponseCIViC BEID5599
RRM1 UnderexpressionPlatinum Compound + GemcitabineLung Non-small Cell CarcinomaSensitivity/ResponseCIViC BEID6434
RRM1 UnderexpressionCisplatin + GemcitabineLung Non-small Cell CarcinomaSensitivity/ResponseCIViC BEID6436
RRM1 OverexpressionGemcitabinePancreatic CancerResistanceCIViC DEID1859

PharmGKB: 1 entry (VIP=true, CPIC=false)

PharmGKB clinical annotations

13 annotations.

VariantTypeLevelDrugsPhenotypes
rs1042858Efficacy4gemcitabineBreast Neoplasms
rs1042919Efficacy3cladribine;cytarabineLeukemia;Myeloid;Acute
rs1042927Efficacy3gemcitabine;Platinum compoundsMesothelioma
rs11030918Toxicity3gemcitabine;Platinum compoundsMesothelioma
rs12806698Toxicity3gemcitabine;Platinum compoundsMesothelioma
rs12806698Efficacy3gemcitabine;Platinum compoundsNon-Small Cell Lung Carcinoma
rs1561876Efficacy3cladribine;cytarabineLeukemia;Myeloid;Acute
rs183484Efficacy3gemcitabineNeoplasms
rs2284449Efficacy3cisplatin;gemcitabineNon-Small Cell Lung Carcinoma
rs232043Efficacy3cisplatin;gemcitabineNon-Small Cell Lung Carcinoma
rs2898950Efficacy3cladribine;cytarabineLeukemia;Myeloid;Acute
rs720106Efficacy3cisplatin;gemcitabineNon-Small Cell Lung Carcinoma
rs9937Efficacy,Toxicity3gemcitabineNeoplasms

PharmGKB variants

16 variants.

VariantGenesLevelScore#Clin annotsDrugs
rs9937RRM135.751gemcitabine
rs183484RRM130.501gemcitabine
rs232043RRM133.001cisplatin;gemcitabine
rs720106RRM133.001cisplatin;gemcitabine
rs725518RRM10.000
rs1042858RRM14-0.501gemcitabine
rs1042919RRM132.251cladribine;cytarabine
rs1042927RRM131.251gemcitabine;Platinum compounds
rs1561876RRM1, STIM132.751cladribine;cytarabine
rs2284449RRM133.001cisplatin;gemcitabine
rs2898950RRM1, STIM131.751cladribine;cytarabine
rs3817657RRM10.000
rs7940013RRM10.000
rs11030918RRM1, STIM133.001gemcitabine;Platinum compounds
rs12806698RRM1, STIM133.002gemcitabine;Platinum compounds
rs1735053RRM10.000

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: enzyme — 1.17.4.1 Ribonucleoside-diphosphate reductases

Most potent curated ligand interactions (4 total), top 4:

LigandActionAffinityParameter
clofarabineInhibition8.3pIC50
TAS1553Binding7.46pKd
fludarabineInhibition6.0pIC50
hydroxyureaInhibition3.83pIC50

Binding affinities (BindingDB)

15 measured of 15 human assays (15 total across all organisms); most potent 15 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
(4S)-5-chloro-N-[(1S,2R)-2-(6-fluoro-2,3-dimethylphenyl)-1-(2-oxo-3H-1,3,4-oxadiazol-5-yl)propyl]-4-hydroxy-4-(trideuteriomethyl)-2,3-dihydrochromene-8-sulfonamideIC5030 nMUS-12344588: Sulfonamide compounds and use thereof
5-chloro-N-[(1S,2R)-2-(6-fluoro-2,3-dimethylphenyl)-1-(2-oxo-3H-1,3,4-oxadiazol-5-yl)propyl]-4-hydroxy-4-(trideuteriomethyl)-2,3-dihydrochromene-8-sulfonamideIC5030 nMUS-20250223270: Sulfonamide Compounds and Use Thereof
dimethylphenyl)-1-(5-oxo-4,5-dihydro-IC5070 nMUS-20250223270: Sulfonamide Compounds and Use Thereof
(4R)-5-chloro-N-[(1S,2R)-2-(6-fluoro-2,3-dimethylphenyl)-1-(2-oxo-3H-1,3,4-oxadiazol-5-yl)propyl]-4-hydroxy-4-(trideuteriomethyl)-2,3-dihydrochromene-8-sulfonamideIC5080 nMUS-12344588: Sulfonamide compounds and use thereof
(4S)-5-chloro-N-[(1S,2R)-2-(3-chloro-6-fluoro-2-methylphenyl)-1-(2-oxo-3H-1,3,4-oxadiazol-5-yl)propyl]-4-hydroxy-4-(trideuteriomethyl)-2,3-dihydrochromene-8-sulfonamideIC5080 nMUS-12344588: Sulfonamide compounds and use thereof
5-chloro-N-[(1S,2R)-2-(6-fluoro-2,3-dimethylphenyl)-1-(2-oxo-3H-1,3,4-oxadiazol-5-yl)propyl]-4-hydroxy-4-(trideuteriomethyl)-2,3-dihydrochromene-8-sulfonamideIC5080 nMUS-20250223270: Sulfonamide Compounds and Use Thereof
5-chloro-N-((1S,2R)-2-(3-chloro-6-IC5080 nMUS-20250223270: Sulfonamide Compounds and Use Thereof
5-chloro-N-((1S,2R)-2-(6-fluoro-2,3-IC5080 nMUS-20250223270: Sulfonamide Compounds and Use Thereof
(4R)-5-chloro-N-[(1S,2R)-2-(3-chloro-6-fluoro-2-methylphenyl)-1-(2-oxo-3H-1,3,4-oxadiazol-5-yl)propyl]-4-hydroxy-4-(trideuteriomethyl)-2,3-dihydrochromene-8-sulfonamideIC50140 nMUS-12344588: Sulfonamide compounds and use thereof
fluoro-2-methylphenyl)-1-(5-oxo-4,5-IC50140 nMUS-20250223270: Sulfonamide Compounds and Use Thereof
TriapineIC501200 nMUS-10155732: Ribonucleotide reductase inhibitors and methods of use
N-[4-(3,4-dihydroxyphenyl)-1,3-thiazol-2-yl]-3,4-dihydroxybenzamideIC509300 nMUS-10155732: Ribonucleotide reductase inhibitors and methods of use
N-[4-(3,4-dihydroxyphenyl)-1,3-thiazol-2-yl]benzamideIC5015300 nMUS-10155732: Ribonucleotide reductase inhibitors and methods of use
3-[(E)-[4-(3,4-dihydroxyphenyl)-1,3-thiazol-2-yl]iminomethyl]-4-hydroxychromen-2-oneIC5019100 nMUS-10155732: Ribonucleotide reductase inhibitors and methods of use
HydroxyureaIC50148000 nMUS-10155732: Ribonucleotide reductase inhibitors and methods of use

ChEMBL bioactivities

374 potent at pChembl≥5 of 449 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
9.22IC500.6nMCHEMBL336289
9.15IC500.7nMCHEMBL96993
9.00IC501nMCHEMBL98729
8.70IC502nMCHEMBL1169533
8.52IC503nMCHEMBL133754
8.52IC503nMCHEMBL305199
8.40IC504nMCHEMBL95998
8.30IC505nMCHEMBL95766
8.30IC505nMCHEMBL335164
8.22IC506nMCHEMBL134961
8.19IC506.4nMCHEMBL120710
8.15IC507nMCHEMBL133827
8.15IC507nMCHEMBL37210
8.12IC507.5nMCHEMBL431851
7.82IC5015nMCHEMBL71945
7.75IC5018nMCHEMBL443029
7.70IC5020nMCHEMBL6001460
7.70IC5020nMCHEMBL1169532
7.66IC5022nMCHEMBL96993
7.66IC5022nMCHEMBL439791
7.66IC5022nMCHEMBL120060
7.62IC5024nMCHEMBL305229
7.57IC5027nMCHEMBL131682
7.52IC5030nMCHEMBL5941178
7.52IC5030nMCHEMBL5913113
7.47IC5034nMCHEMBL414818
7.44IC5036nMCHEMBL118524
7.43IC5037nMCHEMBL98729
7.40IC5040nMCHEMBL5958580
7.40IC5040nMCHEMBL5777432
7.40IC5040nMCHEMBL132130
7.37IC5043nMCHEMBL99950
7.30IC5050nMCHEMBL5813221
7.30IC5050nMCHEMBL5797621
7.30IC5050nMCHEMBL6028518
7.30IC5050nMCHEMBL5987707
7.26IC5055nMCHEMBL1169533
7.22IC5060nMCHEMBL5775741
7.22IC5060nMCHEMBL5869217
7.22IC5060nMCHEMBL5844268
7.22IC5060nMCHEMBL5793033
7.22IC5060nMCHEMBL5960405
7.22IC5060nMCHEMBL5824595
7.22IC5060nMCHEMBL5935086
7.22IC5060nMCHEMBL6057994
7.22IC5060nMCHEMBL5813221
7.22IC5060nMCHEMBL5988394
7.22IC5060nMCHEMBL6019064
7.22IC5060nMCHEMBL6058380
7.22IC5060nMCHEMBL5857144

PubChem BioAssay actives

79 with measured affinity, of 546 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
(2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-3,3-dimethyl-2-(pentan-3-ylcarbamoylamino)butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4,4-dimethylpentanoic acid197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme.ic500.0006uM
(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzyl-3-phenylpropanoyl)amino]-3-methylbutanoyl]amino]-3-methylbutanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-3-carboxypropanoyl]amino]-4-methylpentanoic acid198112: In vitro inhibitory activity against HSV ribonucleotide reductaseic500.0007uM
1-[(1S)-2-[[(1S)-1-carboxy-3-methylbutyl]amino]-1-[[(2S)-2-[[(2S)-3-methyl-2-[[(2S)-3-methyl-2-(3-phenylpropanoylamino)butanoyl]amino]butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-2-oxoethyl]cyclopentane-1-carboxylic acid198112: In vitro inhibitory activity against HSV ribonucleotide reductaseic500.0010uM
(2R)-2-[[(2R)-3-carboxy-2-[[(2S)-2-[[(2R)-2-[[(2R,6S)-2,6-dimethylcyclohexyl]carbamoylamino]-3-methylbutanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme.ic500.0020uM
(2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-3,3-dimethyl-2-(pentan-3-ylcarbamoylamino)butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme.ic500.0030uM
(2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-3,3-dimethyl-2-(pentan-3-ylcarbamoylamino)butanoyl]amino]-5,5-dimethyl-4-oxohexanoyl]amino]propanoyl]amino]-4-methylpentanoic acid197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme.ic500.0030uM
(2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-3,3-dimethyl-2-[[(2S)-3-methyl-2-(3-phenylpropanoylamino)butanoyl]amino]butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid198112: In vitro inhibitory activity against HSV ribonucleotide reductaseic500.0040uM
(2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-3-methyl-2-[[(2S)-3-methyl-2-(3-phenylpropanoylamino)butanoyl]amino]butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4,4-dimethylpentanoic acid198112: In vitro inhibitory activity against HSV ribonucleotide reductaseic500.0050uM
(2S)-2-[[(2S)-3-carboxy-2-[[(2R,5S)-2-(3,3-dimethyl-2-oxobutyl)-6,6-dimethyl-4-oxo-5-(pentan-3-ylcarbamoylamino)heptanoyl]amino]propanoyl]amino]-4-methylpentanoic acid197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme.ic500.0050uM
(3S)-3-[[(2S)-2-[[(2S)-3,3-dimethyl-2-(pentan-3-ylcarbamoylamino)butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-4-[[(2S)-1-hydroxy-4,4-dimethylpentan-2-yl]amino]-4-oxobutanoic acid197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme.ic500.0060uM
1-[(1S)-2-[[(1S)-1-carboxy-3-methylbutyl]amino]-1-[[(2S)-2-[[(2S)-2-(2-ethylbutanoylamino)-3,3-dimethylbutanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-2-oxoethyl]cyclopent-3-ene-1-carboxylic acid198112: In vitro inhibitory activity against HSV ribonucleotide reductaseic500.0064uM
(2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-2-(heptan-4-ylcarbamoylamino)-3-methylbutanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme.ic500.0070uM
(2S)-2-[[(2S)-3-carboxy-2-[[(2S,5S)-6,6-dimethyl-4-oxo-2-(2-oxo-2-pyrrolidin-1-ylethyl)-5-(pentan-3-ylcarbamoylamino)heptanoyl]amino]propanoyl]amino]-4-methylpentanoic acid197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme.ic500.0070uM
(2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-3-methyl-2-[[(2S)-3-methyl-2-[methyl(3-phenylpropanoyl)amino]butanoyl]amino]butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid198112: In vitro inhibitory activity against HSV ribonucleotide reductaseic500.0075uM
(2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-3-methyl-2-(pentan-3-ylcarbamoylamino)butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme.ic500.0150uM
(3S)-4-[[(3R)-2,2-dimethylpentan-3-yl]amino]-3-[[(2S)-2-[[(2S)-3,3-dimethyl-2-(pentan-3-ylcarbamoylamino)butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-4-oxobutanoic acid197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme.ic500.0180uM
(2R)-2-[[(2R)-3-carboxy-2-[[(2S)-2-[[(2R)-2-[[(2S,6S)-2,6-dimethylcyclohexyl]carbamoylamino]-3-methylbutanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid;(2R)-2-[[(2R)-3-carboxy-2-[[(2S)-2-[[(2R)-2-[[(2R,6R)-2,6-dimethylcyclohexyl]carbamoylamino]-3-methylbutanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme.ic500.0200uM
(2S)-2-[[(2S)-2-[[(2S)-4-amino-2-[[(2S)-2-[[(2S)-2-[(2-benzyl-3-phenylpropanoyl)-methylamino]-3-methylbutanoyl]amino]-3-methylbutanoyl]amino]-4-oxobutanoyl]amino]-3-carboxypropanoyl]amino]-4-methylpentanoic acid198112: In vitro inhibitory activity against HSV ribonucleotide reductaseic500.0220uM
(2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-cyclohexyl-2-(3-phenylpropanoylamino)acetyl]amino]-3-methylbutanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid198112: In vitro inhibitory activity against HSV ribonucleotide reductaseic500.0220uM
(2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-3-methyl-2-[[(2S)-3-methyl-2-(3-phenylpropanoylamino)butanoyl]amino]butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme.ic500.0240uM
(3S)-4-[[(2R)-3,3-dimethylbutan-2-yl]amino]-3-[[(2S)-2-[[(2S)-3,3-dimethyl-2-(pentan-3-ylcarbamoylamino)butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-4-oxobutanoic acid197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme.ic500.0270uM
(3S)-4-[[(2S)-1-hydroxy-4,4-dimethylpentan-2-yl]amino]-3-[[(2S)-2-[[(2S)-3-methyl-2-[[(2S)-3-methyl-2-(3-phenylpropanoylamino)butanoyl]amino]butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-4-oxobutanoic acid198112: In vitro inhibitory activity against HSV ribonucleotide reductaseic500.0340uM
(2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-2-[[(2S)-3,3-dimethyl-2-(3-phenylpropanoylamino)butanoyl]amino]-3-methylbutanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid198112: In vitro inhibitory activity against HSV ribonucleotide reductaseic500.0360uM
(3S)-3-[[(2S)-2-[[(2S)-3,3-dimethyl-2-(pentan-3-ylcarbamoylamino)butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-4-(2,2-dimethylpropylamino)-4-oxobutanoic acid197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme.ic500.0400uM
(3S)-4-[[(1S)-1-carboxy-3-methylbutyl]amino]-3-[[(2S)-2-[[(2S)-2-(2-ethylbutanoylamino)-3,3-dimethylbutanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-2,2-dimethyl-4-oxobutanoic acid198112: In vitro inhibitory activity against HSV ribonucleotide reductaseic500.0430uM
(2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-3-methyl-2-[[(2S,3S)-3-methyl-2-(3-phenylpropanoylamino)pentanoyl]amino]butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid198112: In vitro inhibitory activity against HSV ribonucleotide reductaseic500.0610uM
(3S)-4-(3,3-dimethylbutylamino)-3-[[(2S)-2-[[(2S)-3,3-dimethyl-2-(pentan-3-ylcarbamoylamino)butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-4-oxobutanoic acid197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme.ic500.1000uM
(2S)-2-[[(2S)-2-[[(2S)-4-amino-2-[[(2S)-2-[[(2S)-2-[(2-benzyl-3-phenylpropanoyl)amino]-3-methylbutanoyl]amino]-3-methylbutanoyl]amino]-4-oxobutanoyl]amino]-3-carboxypropanoyl]amino]-4-methylpentanoic acid198112: In vitro inhibitory activity against HSV ribonucleotide reductaseic500.1800uM
(2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-3-methyl-2-[[(2S)-2-(3-phenylpropanoylamino)butanoyl]amino]butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid198112: In vitro inhibitory activity against HSV ribonucleotide reductaseic500.3400uM
(3S)-3-[[(2S)-2-[[(2S)-3,3-dimethyl-2-(pentan-3-ylcarbamoylamino)butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-4-(3-methylbutylamino)-4-oxobutanoic acid197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme.ic500.3500uM
(2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-3-methyl-2-(propan-2-ylcarbamoylamino)butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme.ic500.4400uM
(2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-2-(cyclohexylcarbamoylamino)-3-methylbutanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme.ic500.5000uM
(2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-2-(2-ethylbutanoylamino)-3-methylbutanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme.ic500.8600uM
(2S)-2-[[(2S)-2-[[(2S)-4-amino-2-[[(2S)-3-methyl-2-[[(2S)-3-methyl-2-[[(2R)-2-methyl-3-phenylpropanoyl]amino]butanoyl]amino]butanoyl]amino]-4-oxobutanoyl]amino]-3-carboxypropanoyl]amino]-4-methylpentanoic acid198112: In vitro inhibitory activity against HSV ribonucleotide reductaseic500.8600uM
(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-acetamido-3-methylbutanoyl]amino]-3-methylbutanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-3-carboxypropanoyl]amino]-4-methylpentanoic acid198112: In vitro inhibitory activity against HSV ribonucleotide reductaseic500.8800uM
(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S,3R)-2-[[(2S)-2-[[(2S,3R)-2-[[2-[[(2S)-2-[[(2S)-2-[[(2S)-2-acetamido-3-(4-nitrophenyl)propanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]propanoyl]amino]acetyl]amino]-3-hydroxybutanoyl]amino]-3-methylbutanoyl]amino]-3-methylpentanoyl]amino]-4-amino-4-oxobutanoyl]amino]-3-carboxypropanoyl]amino]-4-methylpentanoic acid197834: Inhibitory concentration against HSV-1 ribonucleotide reductase R1 protein bindingic501.5000uM
4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide2149321: Binding affinity to human RRM1 incubated for 45 mins by Kinobead based pull down assaykd1.6693uM
(3S)-3-[[(2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[2-[9H-fluoren-9-ylmethoxycarbonyl(methyl)amino]-2-phenylacetyl]amino]-4-methylpentanoyl]amino]propanoyl]amino]-3-cyclohexylpropanoyl]amino]-4-[[(1S)-1-carboxy-2-phenylethyl]amino]-4-oxobutanoic acid242343: Inhibition of mammalian ribonucleotide reductase in a standard dTTP-dependent GDP reductase assayic501.9000uM
(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S,3R)-2-[[(2S)-2-[[(2S,3R)-2-[[2-[[(2S)-2-[[(2S)-2-acetamido-3-(1H-indol-3-yl)propanoyl]amino]propanoyl]amino]acetyl]amino]-3-hydroxybutanoyl]amino]-3-methylbutanoyl]amino]-3-methylpentanoyl]amino]-4-amino-4-oxobutanoyl]amino]-3-carboxypropanoyl]amino]-4-methylpentanoic acid197834: Inhibitory concentration against HSV-1 ribonucleotide reductase R1 protein bindingic501.9000uM
(3S)-3-[[(2S)-2-[[(2S)-3,3-dimethyl-2-(pentan-3-ylcarbamoylamino)butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-4-(2-methylpropylamino)-4-oxobutanoic acid197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme.ic501.9000uM
(3S)-4-[[(3S)-2,2-dimethylpentan-3-yl]amino]-3-[[(2S)-2-[[(2S)-3,3-dimethyl-2-(pentan-3-ylcarbamoylamino)butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-4-oxobutanoic acid197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme.ic502.0000uM
(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S,3R)-2-[[(2S)-2-[[(2S,3R)-2-[[2-[[(2S)-2-[[(2S)-2-acetamido-3-(4-hydroxyphenyl)propanoyl]amino]-3-hydroxypropanoyl]amino]acetyl]amino]-3-hydroxybutanoyl]amino]-3-methylbutanoyl]amino]-3-methylpentanoyl]amino]-4-amino-4-oxobutanoyl]amino]-3-carboxypropanoyl]amino]-4-methylpentanoic acid198110: Inhibitory concentration against HSV-1 ribonucleotide reductase R1 protein bindingic502.2000uM
(4S)-5-[[(2S)-1-[[(2S)-3-carboxy-1-[[(1S)-1-carboxy-2-phenylethyl]amino]-1-oxopropan-2-yl]amino]-3-cyclohexyl-1-oxopropan-2-yl]amino]-4-[[(2S)-2-[[3-(9H-fluoren-9-ylmethoxy)-3-oxo-2-phenylpropanoyl]amino]-4-methylpentanoyl]amino]-5-oxopentanoic acid242343: Inhibition of mammalian ribonucleotide reductase in a standard dTTP-dependent GDP reductase assayic502.4000uM
(3S)-3-[[(2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[3-(9H-fluoren-9-ylmethoxy)-3-oxo-2-phenylpropanoyl]amino]-4-methylpentanoyl]amino]propanoyl]amino]-3-cyclohexylpropanoyl]amino]-4-[[(1S)-1-carboxy-2-phenylethyl]amino]-4-oxobutanoic acid242343: Inhibition of mammalian ribonucleotide reductase in a standard dTTP-dependent GDP reductase assayic502.4000uM
(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S,3R)-2-[[(2S,3S)-2-[[(2S,3R)-2-[[2-[[(2S)-2-[[(2S)-2-acetamido-3-(4-hydroxyphenyl)propanoyl]amino]propanoyl]amino]acetyl]amino]-3-hydroxybutanoyl]amino]-3-methylpentanoyl]amino]-3-methylpentanoyl]amino]-4-amino-4-oxobutanoyl]amino]-3-carboxypropanoyl]amino]-4-methylpentanoic acid198110: Inhibitory concentration against HSV-1 ribonucleotide reductase R1 protein bindingic502.6000uM
(3S)-4-[[(2S)-3,3-dimethylbutan-2-yl]amino]-3-[[(2S)-2-[[(2S)-3,3-dimethyl-2-(pentan-3-ylcarbamoylamino)butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-4-oxobutanoic acid197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme.ic502.7000uM
(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S,3R)-2-[[(2S)-2-[[(2S,3R)-2-[[2-[[(2S)-2-[[(2S)-2-acetamido-3-(4-hydroxy-3-iodophenyl)propanoyl]amino]propanoyl]amino]acetyl]amino]-3-hydroxybutanoyl]amino]-3-methylbutanoyl]amino]-3-methylpentanoyl]amino]-4-amino-4-oxobutanoyl]amino]-3-carboxypropanoyl]amino]-4-methylpentanoic acid197834: Inhibitory concentration against HSV-1 ribonucleotide reductase R1 protein bindingic502.8000uM
(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S,3R)-2-[[(2S)-2-[[(2S,3R)-2-[[2-[[(2R)-2-[[(2S)-2-acetamido-3-(4-hydroxyphenyl)propanoyl]amino]-3-sulfanylpropanoyl]amino]acetyl]amino]-3-hydroxybutanoyl]amino]-3-methylbutanoyl]amino]-3-methylpentanoyl]amino]-4-amino-4-oxobutanoyl]amino]-3-carboxypropanoyl]amino]-4-methylpentanoic acid198110: Inhibitory concentration against HSV-1 ribonucleotide reductase R1 protein bindingic503.1000uM
1-[(1S)-1-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzyl-3-phenylpropanoyl)-methylamino]-3-methylbutanoyl]amino]-3,3-dimethylbutanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-2-[[(2S)-1-hydroxy-4,4-dimethylpentan-2-yl]amino]-2-oxoethyl]cyclopentane-1-carboxylic acid41530: Inhibitory activity against HSV-1 in baby hamster kidney cellec503.1000uM
(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S,3R)-2-[[(2S)-2-[[(2S,3R)-2-[[2-[[(2S)-2-[[(2S)-2-acetamido-3-(4-hydroxyphenyl)propanoyl]amino]propanoyl]amino]acetyl]amino]-3-hydroxybutanoyl]amino]-3-methylbutanoyl]amino]-3-methylpentanoyl]amino]-4-amino-4-oxobutanoyl]amino]-3-carboxypropanoyl]amino]-4-methylpentanoic acid198110: Inhibitory concentration against HSV-1 ribonucleotide reductase R1 protein bindingic503.2000uM

CTD chemical–gene interactions

95 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
bisphenol Aaffects expression, decreases expression4
Arsenic Trioxideaffects binding, decreases reaction, decreases expression, increases expression4
Acetaminophenincreases expression, decreases expression3
Cyclosporineaffects expression, decreases expression3
sodium arsenitedecreases methylation, increases expression2
4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamidedecreases expression, affects cotreatment, increases expression2
Resveratrolaffects cotreatment, increases expression2
Gemcitabinedecreases response to substance, increases expression, affects response to substance2
Benzo(a)pyreneincreases expression, increases methylation2
Cisplatinincreases expression2
Estradiolincreases expression2
Hydrogen Peroxideaffects expression2
Phenylmercuric Acetateaffects cotreatment, decreases expression2
Valproic Aciddecreases expression2
tert-Butylhydroperoxideaffects expression, decreases expression2
Vitamin K 3affects expression2
3-((6-(2-methoxyphenyl)pyrimidin-4-yl)amino)phenyl)methane sulfonamidedecreases reaction, increases degradation, decreases expression1
dicrotophosdecreases expression1
bismuth tripotassium dicitrateincreases expression1
2,4,6-tribromophenoldecreases expression1
triphenyl phosphateaffects expression1
2,2’-methylenebis(4-methyl-6-tert-butylphenol)affects expression, affects response to substance1
methylselenic acidaffects expression1
decabromobiphenyl etherdecreases expression1
beta-lapachoneincreases expression1
arseniteaffects binding, decreases reaction, increases reaction1
afimoxifenedecreases expression1
tris(1,3-dichloro-2-propyl)phosphatedecreases expression1
cobaltous chloridedecreases expression1
tetrabromobisphenol Adecreases expression1

ChEMBL screening assays

83 unique, capped per target: 80 binding, 3 functional

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL3243357BindingInhibition of RRM1 in human U2OS cells assessed as gammaH2AX induction after 2 hrs by FITC/propidium iodide-staining based flow cytometry in presence of SCH900776The identification of novel 5’-amino gemcitabine analogs as potent RRM1 inhibitors. — Bioorg Med Chem
CHEMBL652605FunctionalInhibitory activity against HSV-1 in baby hamster kidney cellPeptidomimetic inhibitors of herpes simplex virus ribonucleotide reductase: a new class of antiviral agents. — J Med Chem

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.