RRM2B
gene geneOn this page
Also known as p53R2
Summary
RRM2B (ribonucleotide reductase regulatory TP53 inducible subunit M2B, HGNC:17296) is a protein-coding gene on chromosome 8q22.3, encoding Ribonucleoside-diphosphate reductase subunit M2 B (Q7LG56). Plays a pivotal role in cell survival by repairing damaged DNA in a p53/TP53-dependent manner.
This gene encodes the small subunit of a p53-inducible ribonucleotide reductase. This heterotetrameric enzyme catalyzes the conversion of ribonucleoside diphosphates to deoxyribonucleoside diphosphates. The product of this reaction is necessary for DNA synthesis. Mutations in this gene have been associated with autosomal recessive mitochondrial DNA depletion syndrome, autosomal dominant progressive external ophthalmoplegia-5, and mitochondrial neurogastrointestinal encephalopathy. Alternatively spliced transcript variants have been described.
Source: NCBI Gene 50484 — RefSeq curated summary.
At a glance
- Gene–disease (curated): mitochondrial DNA depletion syndrome 8a (Definitive, GenCC) — +5 more curated relationships
- GWAS associations: 7
- Clinical variants (ClinVar): 431 total — 17 pathogenic, 21 likely-pathogenic
- Phenotypes (HPO): 189
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_015713
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:17296 |
| Approved symbol | RRM2B |
| Name | ribonucleotide reductase regulatory TP53 inducible subunit M2B |
| Location | 8q22.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | p53R2 |
| Ensembl gene | ENSG00000048392 |
| Ensembl biotype | protein_coding |
| OMIM | 604712 |
| Entrez | 50484 |
Gene structure
Transcript identifiers
Ensembl transcripts: 15 — 10 protein_coding, 3 retained_intron, 2 nonsense_mediated_decay
ENST00000251810, ENST00000395910, ENST00000395912, ENST00000517517, ENST00000519125, ENST00000519317, ENST00000519962, ENST00000522368, ENST00000522394, ENST00000523957, ENST00000854932, ENST00000930763, ENST00000930764, ENST00000930765, ENST00000941786
RefSeq mRNA: 3 — MANE Select: NM_015713
NM_001172477, NM_001172478, NM_015713
CCDS: CCDS34932, CCDS55267
Canonical transcript exons
ENST00000251810 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000926193 | 102218814 | 102218947 |
| ENSE00000926194 | 102224046 | 102224140 |
| ENSE00001019056 | 102204502 | 102208285 |
| ENSE00001161985 | 102238827 | 102238961 |
| ENSE00001799324 | 102224885 | 102225018 |
| ENSE00003465301 | 102212776 | 102212889 |
| ENSE00003508149 | 102214054 | 102214158 |
| ENSE00003547865 | 102232149 | 102232304 |
| ENSE00003595771 | 102225918 | 102226034 |
Expression profiles
Bgee: expression breadth ubiquitous, 254 present calls, max score 96.73.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 24.3780 / max 361.4076, expressed in 1807 samples.
FANTOM5 promoters (7 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 94261 | 15.2822 | 1776 |
| 94259 | 2.7736 | 1149 |
| 94260 | 1.7893 | 1038 |
| 94262 | 1.5975 | 903 |
| 94257 | 1.3969 | 648 |
| 94258 | 0.9157 | 540 |
| 94256 | 0.6227 | 291 |
Top tissues by expression
257 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| secondary oocyte | CL:0000655 | 96.73 | gold quality |
| oocyte | CL:0000023 | 95.51 | gold quality |
| deltoid | UBERON:0001476 | 93.67 | gold quality |
| islet of Langerhans | UBERON:0000006 | 93.33 | gold quality |
| quadriceps femoris | UBERON:0001377 | 93.31 | gold quality |
| vastus lateralis | UBERON:0001379 | 93.09 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 92.80 | gold quality |
| tibialis anterior | UBERON:0001385 | 92.45 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 92.45 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 92.00 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 91.97 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 91.87 | gold quality |
| calcaneal tendon | UBERON:0003701 | 91.85 | gold quality |
| visceral pleura | UBERON:0002401 | 91.78 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 91.62 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 91.58 | silver quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 91.09 | gold quality |
| skeletal muscle organ | UBERON:0014892 | 91.00 | gold quality |
| muscle of leg | UBERON:0001383 | 90.63 | gold quality |
| gastrocnemius | UBERON:0001388 | 90.63 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 90.62 | gold quality |
| muscle tissue | UBERON:0002385 | 90.60 | gold quality |
| heart right ventricle | UBERON:0002080 | 90.55 | gold quality |
| biceps brachii | UBERON:0001507 | 89.46 | gold quality |
| renal medulla | UBERON:0000362 | 89.41 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 89.31 | gold quality |
| stromal cell of endometrium | CL:0002255 | 89.16 | gold quality |
| myocardium | UBERON:0002349 | 89.14 | silver quality |
| lateral globus pallidus | UBERON:0002476 | 89.03 | gold quality |
| tibia | UBERON:0000979 | 88.98 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-93593 | yes | 724.29 |
| E-ANND-3 | yes | 8.98 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): CREB1, EGR1, GLI1, MTA1, NFKB1, POU2F1, TP53, TP73
miRNA regulators (miRDB)
176 targeting RRM2B, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4425 | 100.00 | 67.59 | 1049 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-450A-1-3P | 100.00 | 69.33 | 1837 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-3162-3P | 100.00 | 65.37 | 363 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-1184 | 99.99 | 68.19 | 1458 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-3667-3P | 99.99 | 67.17 | 1636 |
| HSA-MIR-520G-5P | 99.99 | 66.76 | 658 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-499A-5P | 99.98 | 70.79 | 1323 |
| HSA-MIR-568 | 99.98 | 69.86 | 2084 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-4725-3P | 99.96 | 69.53 | 2520 |
| HSA-MIR-6780B-5P | 99.96 | 69.60 | 2562 |
| HSA-MIR-1468-3P | 99.96 | 72.74 | 3797 |
| HSA-MIR-548AA | 99.96 | 70.64 | 3753 |
| HSA-MIR-548AP-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-548T-3P | 99.96 | 70.64 | 3753 |
Literature-anchored findings (GeneRIF, showing 40)
- p53R2-dependent DNA synthesis plays a pivotal role in cell survival by repairing damaged DNA (PMID:11719458)
- Expression of p53R2, newly p53 target in oral normal epithelium, epithelial dysplasia and squamous cell carcinoma. (PMID:12565178)
- Wild-type p53 regulates human ribonucleotide reductase by protein-protein interaction with p53R2 as well as hRRM2 subunits. (PMID:12615712)
- UV-induced activation of p53R2 transcription and binding of p53R2 to hRRM1 to form RR holoenzyme are impaired in the p53-mutant cell line PC3. (PMID:14583450)
- Four regulatory-region variants were found, of which three were single nucleotide polymorphisms (SNPs) (nt 1 789 C/G, nt 1 928 A/G, 1 933 T/C), and one was 20 bp insertion which replaced a ATTTT between nt 1831 and 1835. (PMID:16127747)
- we developed a p53R2-dependent luciferase reporter gene assay, and demonstrated dose-dependent luminescence caused by adriamycin in two human cell lines that express wild-type p53, MCF-7 and HepG2 (PMID:16236544)
- RRM2 and p53R2 subunits share the same binding site on RRM1 (PMID:16376858)
- Expressions of p53 and p53R2 proteins should be useful for determining the tumor properties, including prognosis, in patients with esophageal squamous cell carcinoma. (PMID:16778101)
- Catalytic properties are assessed. (PMID:16846634)
- ectopic expression of human papillomavirus 16 E6 impaired p53R2 induction after DNA damage in human fibroblasts (PMID:16872707)
- Mutation of RRM2B is associated with mitochondrial Diseases (PMID:17486094)
- p53R2 expression is reduced after X-ray irradiation following the transfection of p53R2 siRNAin esophageal squamous cell carcinoma. This could potentially improve efficacy of radiotheraepy. (PMID:17671702)
- a protective function of the p53R2 ribonucleotide reductase subunit in prevention or repair of NO-mediated genotoxic injury. (PMID:18474260)
- Sequencing the RRM2B gene revealed three missense mutations and two single nucleotide deletions in exons 6, 8, and 9, confirming that RRM2B mutations are important causes of MDS. (PMID:18504129)
- analysis of the effects of p53R2 silencing on DNA damage in LNCaP cells (PMID:18505925)
- p53R2 constitutes a potential target for anticancer drugs as well as a diagnostic marker in cancer. (PMID:18760875)
- The redox property, structure, and function of hRRM2 and p53R2, are studied. (PMID:19082948)
- This report describes two brothers, both deceased in infancy, with severe depletion of mitochondrial DNA (mtDNA) in muscle tissue. A novel missense mutation in the RRM2B gene, encoding the p53R2 subunit, was identified (PMID:19138848)
- A heterozygous truncating mutation in RRM2B causes autosomal-dominant progressive external ophthalmoplegia with multiple mtDNA deletions. (PMID:19664747)
- This study expands the clinical spectrum of impaired RIR2B function. (PMID:19667227)
- The X-ray crystal structure of human p53R2 is determined to 2.6 A, in which monomers A and B exhibit mono- and binuclear iron occupancy, respectively. Sequence-structure-function correlations that differentiate p53R2 and RRM2 are revealed. (PMID:19728742)
- This study correlates the distinct catalytic mechanisms of the small subunits hp53R2 and hRRM2 with a hydrogen-bonding network. (PMID:20484015)
- p53R2 may suppress cancer cell proliferation; plays critical roles not only in DNA damage repair but also in proliferation of cancer cells (PMID:21216934)
- oss of p53R2 affects ribonucleotide reduction only in resting cells and leads to a decrease of dNTP catabolism by substrate cycles that counterweigh the loss of anabolic activity (PMID:21297166)
- Evidence that disease pathogenesis may be caused by defective RNR assembly is given. (PMID:21378381)
- Increased expression of p53R2 may predict gemcitabine resistance, and upregulated RNR activity may influence gemcitabine resistance in cholangiocarcinoma cells. (PMID:21451941)
- this study provides functional evidence that mitochondria is one of p53R2-targeted organelles and suggests an unexpected function of p53R2, which is beyond known ribonucleotide reductase function on dNTP synthesis, in mitochondrial homeostatic control. (PMID:21640705)
- Adult-onset progressive external ophthalmoplegia due to RRM2B mutations is associated with a benign myopathic phenotype and characterized by muscle-restricted, mitochondrial DNA deletions. (PMID:21646632)
- p53R2 expression seems more important than that of hRRM2 in prognosis of early-stage lung cancer. (PMID:21965764)
- In nontransformed cells only during quiescence, protein p53R2 is required for maintenance of mitochondrial DNA and for optimal DNA repair after ultraviolet damage. (PMID:22847445)
- These results confirm a role for p53R2 in both Clofarabine and decitabine mechanism of action (PMID:22884950)
- p53R2 is directly regulated by p53 and also by a MEK2 (ERK kinase 2/MAP kinase kinase 2)-dependent pathway. (PMID:22895183)
- Propose p53R2 as a therapeutic target to enhance the effectiveness of chemotherapy in patients with p53R2-positive melanoma. (PMID:22902076)
- p53R2 could regulate matrix synthesis via Akt phosphorylation during chondrocyte mechanotransduction. Down-regulation of p53R2 may be a new therapeutic approach in OA therapy. (PMID:22954457)
- RRM2B is highly induced in a p53-dependent manner during senescence and is expressed at higher levels in senescent precancerous human prostatic intraepithelial neoplasm lesions compared to adjacent normal prostate glands. (PMID:23139867)
- RRM2B expression may discriminate cervical cancer phenotype and radiochemotherapy outcome (PMID:23552804)
- Ribonucleotide reductase M2B inhibits cell migration and spreading by early growth response protein 1-mediated phosphatase and tensin homolog/Akt1 pathway in hepatocellular carcinoma. (PMID:24214128)
- we found no support of the hypothesis that aberrations of RRM1 or RRM2B, neither individually nor in combination, are associated with an altered clinical outcome following chemotherapy. (PMID:24215511)
- in Turkish population p53R2 genotype distributions between head and neck squamous epithelial cell cancer patients and control groups were not statistically significantly different. (PMID:24861915)
- Data indicate that forkhead transcription factorsF OXO3 directly bound to and transcriptionally activated the promoter of ribonucleotide reductase subunit RRM2B, and induced the expression of RRM2B at RNA and protein levels. (PMID:24947616)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | rrm2b | ENSDARG00000033367 |
| mus_musculus | Rrm2b | ENSMUSG00000022292 |
| rattus_norvegicus | Rrm2b | ENSRNOG00000025454 |
| drosophila_melanogaster | RnrS | FBGN0011704 |
| caenorhabditis_elegans | WBGENE00004392 |
Paralogs (1): RRM2 (ENSG00000171848)
Protein
Protein identifiers
Ribonucleoside-diphosphate reductase subunit M2 B — Q7LG56 (reviewed: Q7LG56)
Alternative names: TP53-inducible ribonucleotide reductase M2 B, p53-inducible ribonucleotide reductase small subunit 2-like protein
All UniProt accessions (3): Q7LG56, E5RG52, H0YAV1
UniProt curated annotations — full annotation on UniProt →
Function. Plays a pivotal role in cell survival by repairing damaged DNA in a p53/TP53-dependent manner. Supplies deoxyribonucleotides for DNA repair in cells arrested at G1 or G2. Contains an iron-tyrosyl free radical center required for catalysis. Forms an active ribonucleotide reductase (RNR) complex with RRM1 which is expressed both in resting and proliferating cells in response to DNA damage.
Subunit / interactions. Heterotetramer with large (RRM1) subunit. Interacts with p53/TP53. Interacts with RRM1 in response to DNA damage.
Subcellular location. Cytoplasm. Nucleus.
Tissue specificity. Widely expressed at a high level in skeletal muscle and at a weak level in thymus. Expressed in epithelial dysplasias and squamous cell carcinoma.
Disease relevance. Mitochondrial DNA depletion syndrome 8A (MTDPS8A) [MIM:612075] A disorder due to mitochondrial dysfunction characterized by various combinations of neonatal hypotonia, neurological deterioration, respiratory distress, lactic acidosis, and renal tubulopathy. The disease is caused by variants affecting the gene represented in this entry. Mitochondrial DNA depletion syndrome 8B (MTDPS8B) [MIM:612075] A disease due to mitochondrial dysfunction and characterized by ophthalmoplegia, ptosis, gastrointestinal dysmotility, cachexia, peripheral neuropathy. The disease is caused by variants affecting the gene represented in this entry. Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant, 5 (PEOA5) [MIM:613077] A disorder characterized by progressive weakness of ocular muscles and levator muscle of the upper eyelid. In a minority of cases, it is associated with skeletal myopathy, which predominantly involves axial or proximal muscles and which causes abnormal fatigability and even permanent muscle weakness. Ragged-red fibers and atrophy are found on muscle biopsy. A large proportion of chronic ophthalmoplegias are associated with other symptoms, leading to a multisystemic pattern of this disease. Additional symptoms are variable, and may include cataracts, hearing loss, sensory axonal neuropathy, ataxia, depression, hypogonadism, and parkinsonism. The disease is caused by variants affecting the gene represented in this entry. Rod-cone dystrophy, sensorineural deafness, and Fanconi-type renal dysfunction (RCDFRD) [MIM:268315] An autosomal recessive disease characterized by visual impairment due to rod-cone dystrophy, sensorineural hearing loss, and Fanconi-type renal dysfunction resulting in rickets-like skeletal changes. Death may occur in childhood or young adulthood due to renal failure. Disease onset is before age 5 years. The disease is caused by variants affecting the gene represented in this entry.
Cofactor. Binds 2 iron ions per subunit.
Induction. In response to DNA damage in a wild-type p53/TP53-dependent manner.
Miscellaneous. May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay.
Similarity. Belongs to the ribonucleoside diphosphate reductase small chain family.
Isoforms (6)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q7LG56-1 | 1 | yes |
| Q7LG56-2 | 2, Long form | |
| Q7LG56-3 | 3, Short form gamma | |
| Q7LG56-4 | 4, Short form beta | |
| Q7LG56-5 | 5, Short form | |
| Q7LG56-6 | 6 |
RefSeq proteins (3): NP_001165948, NP_001165949, NP_056528* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000358 | RNR_small_fam | Family |
| IPR009078 | Ferritin-like_SF | Homologous_superfamily |
| IPR012348 | RNR-like | Homologous_superfamily |
| IPR030475 | RNR_small_AS | Active_site |
| IPR033909 | RNR_small | Family |
Pfam: PF00268
Enzyme classification (BRENDA):
- EC 1.17.4.1 — ribonucleoside-diphosphate reductase (BRENDA: 56 organisms, 130 substrates, 474 inhibitors, 39 Km, 9 kcat entries)
Substrate kinetics (BRENDA)
10 substrates with measured Km, best-characterized 10. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| CDP | 0.0005–0.31 | 14 |
| ADP | 0.0078–0.3 | 6 |
| GDP | 0.0012–0.37 | 4 |
| UDP | 0.08–1.2 | 4 |
| ATP | 0.07 | 1 |
| DATP | 0.003 | 1 |
| DTTP | 0.0015 | 1 |
| GLUTAREDOXIN | 0.0001 | 1 |
| GLUTAREDOXIN 1 | 0.006 | 1 |
| THIOREDOXIN | 0.003 | 1 |
Catalyzed reactions (Rhea), 1 shown:
- a 2’-deoxyribonucleoside 5’-diphosphate + [thioredoxin]-disulfide + H2O = a ribonucleoside 5’-diphosphate + [thioredoxin]-dithiol (RHEA:23252)
UniProt features (52 total): helix 18, sequence variant 13, binding site 7, splice variant 6, turn 2, strand 2, chain 1, region of interest 1, active site 1, sequence conflict 1
Structure
Experimental structures (PDB)
3 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 4DJN | X-RAY DIFFRACTION | 2.2 |
| 3HF1 | X-RAY DIFFRACTION | 2.6 |
| 2VUX | X-RAY DIFFRACTION | 2.8 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q7LG56-F1 | 85.73 | 0.76 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 138
Ligand- & substrate-binding residues (7): 100; 131; 131; 134; 194; 228; 231
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-499943 | Interconversion of nucleotide di- and triphosphates |
| R-HSA-5628897 | TP53 Regulates Metabolic Genes |
MSigDB gene sets: 553 (showing top):
RNGTGGGC_UNKNOWN, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_NUCLEOSIDE_DIPHOSPHATE_METABOLIC_PROCESS, GOBP_NEGATIVE_REGULATION_OF_INTRINSIC_APOPTOTIC_SIGNALING_PATHWAY_BY_P53_CLASS_MEDIATOR, GOBP_RESPONSE_TO_AMINE, GOBP_MITOCHONDRIAL_DNA_METABOLIC_PROCESS, GOLDRATH_IMMUNE_MEMORY, GOBP_CELL_CYCLE_PHASE_TRANSITION, GOBP_POSITIVE_REGULATION_OF_MITOTIC_CELL_CYCLE, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, GOBP_NUCLEOSIDE_PHOSPHATE_BIOSYNTHETIC_PROCESS, KAUFFMANN_DNA_REPAIR_GENES, GOBP_ORGANOPHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_CARBOHYDRATE_DERIVATIVE_METABOLIC_PROCESS, GOBP_NEGATIVE_REGULATION_OF_INTRACELLULAR_SIGNAL_TRANSDUCTION
GO Biological Process (16): DNA synthesis involved in DNA repair (GO:0000731), kidney development (GO:0001822), renal system process (GO:0003014), mitochondrial DNA replication (GO:0006264), DNA repair (GO:0006281), response to oxidative stress (GO:0006979), ribonucleoside diphosphate metabolic process (GO:0009185), deoxyribonucleoside triphosphate metabolic process (GO:0009200), deoxyribonucleotide biosynthetic process (GO:0009263), 2’-deoxyribonucleotide biosynthetic process (GO:0009265), positive regulation of G2/M transition of mitotic cell cycle (GO:0010971), response to amine (GO:0014075), positive regulation of G0 to G1 transition (GO:0070318), negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator (GO:1902254), DNA damage response (GO:0006974), positive regulation of mitotic cell cycle phase transition (GO:1901992)
GO Molecular Function (5): ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor (GO:0004748), identical protein binding (GO:0042802), metal ion binding (GO:0046872), protein binding (GO:0005515), oxidoreductase activity (GO:0016491)
GO Cellular Component (7): nucleoplasm (GO:0005654), mitochondrion (GO:0005739), cytosol (GO:0005829), ribonucleoside-diphosphate reductase complex (GO:0005971), nucleus (GO:0005634), cytoplasm (GO:0005737), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Metabolism of nucleotides | 1 |
| Transcriptional Regulation by TP53 | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| 2’-deoxyribonucleotide metabolic process | 2 |
| cytoplasm | 2 |
| intracellular membrane-bounded organelle | 2 |
| DNA repair | 1 |
| DNA biosynthetic process | 1 |
| animal organ development | 1 |
| renal system development | 1 |
| system process | 1 |
| mitochondrion | 1 |
| DNA-templated DNA replication | 1 |
| mitochondrial DNA metabolic process | 1 |
| DNA metabolic process | 1 |
| DNA damage response | 1 |
| response to stress | 1 |
| nucleoside diphosphate metabolic process | 1 |
| biosynthetic process | 1 |
| deoxyribonucleotide metabolic process | 1 |
| nucleotide biosynthetic process | 1 |
| deoxyribose phosphate biosynthetic process | 1 |
| G2/M transition of mitotic cell cycle | 1 |
| regulation of G2/M transition of mitotic cell cycle | 1 |
| positive regulation of mitotic cell cycle phase transition | 1 |
| positive regulation of cell cycle G2/M phase transition | 1 |
| response to nitrogen compound | 1 |
| G0 to G1 transition | 1 |
| regulation of G0 to G1 transition | 1 |
| positive regulation of cell cycle process | 1 |
| intrinsic apoptotic signaling pathway by p53 class mediator | 1 |
| negative regulation of signal transduction by p53 class mediator | 1 |
| regulation of intrinsic apoptotic signaling pathway by p53 class mediator | 1 |
| negative regulation of intrinsic apoptotic signaling pathway | 1 |
| cellular response to stress | 1 |
| mitotic cell cycle phase transition | 1 |
| positive regulation of mitotic cell cycle | 1 |
| positive regulation of cell cycle phase transition | 1 |
| regulation of mitotic cell cycle phase transition | 1 |
| ribonucleoside-diphosphate reductase activity | 1 |
| protein binding | 1 |
| cation binding | 1 |
Protein interactions and networks
STRING
2294 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RRM2B | RRM1 | P23921 | 996 |
| RRM2B | POLG | P54098 | 942 |
| RRM2B | POLG2 | Q9UHN1 | 930 |
| RRM2B | TP53 | P04637 | 923 |
| RRM2B | DGUOK | P78532 | 911 |
| RRM2B | MPV17 | P39210 | 901 |
| RRM2B | SUCLA2 | Q9P2R7 | 901 |
| RRM2B | RRM2 | P31350 | 893 |
| RRM2B | TWNK | Q96RR1 | 880 |
| RRM2B | SLC25A4 | P12235 | 838 |
| RRM2B | TYMP | P19971 | 798 |
| RRM2B | SUCLG1 | P53597 | 771 |
| RRM2B | TK2 | O00142 | 713 |
| RRM2B | PYCR2 | Q96C36 | 655 |
| RRM2B | MDM2 | Q00987 | 641 |
IntAct
46 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| NHERF2 | PODXL | psi-mi:“MI:0914”(association) | 0.770 |
| RRM2B | RRM2B | psi-mi:“MI:0915”(physical association) | 0.670 |
| RRM2 | HSPA8 | psi-mi:“MI:0914”(association) | 0.640 |
| ORC4 | RRM2B | psi-mi:“MI:0915”(physical association) | 0.600 |
| RRM2B | ORC4 | psi-mi:“MI:0915”(physical association) | 0.600 |
| RRM2B | RNF41 | psi-mi:“MI:0915”(physical association) | 0.560 |
| RRM2 | CDC27 | psi-mi:“MI:0914”(association) | 0.530 |
| BAG2 | HGS | psi-mi:“MI:0914”(association) | 0.530 |
| RRM1 | GLRX3 | psi-mi:“MI:0914”(association) | 0.530 |
| GMFB | GMFG | psi-mi:“MI:0914”(association) | 0.530 |
| RRM2 | RRM2B | psi-mi:“MI:0914”(association) | 0.530 |
| LAGE3 | CTSA | psi-mi:“MI:0914”(association) | 0.530 |
| OPALIN | BTAF1 | psi-mi:“MI:0914”(association) | 0.530 |
| RRM2B | ATM | psi-mi:“MI:0915”(physical association) | 0.500 |
| MET | NDUFA4 | psi-mi:“MI:2364”(proximity) | 0.420 |
| RRM2B | ATRIP | psi-mi:“MI:0915”(physical association) | 0.400 |
| MDM2 | RRM2B | psi-mi:“MI:0915”(physical association) | 0.400 |
| RRM2B | TP53 | psi-mi:“MI:0914”(association) | 0.350 |
| ATM | RRM1 | psi-mi:“MI:0914”(association) | 0.350 |
| RRM2B | NBN | psi-mi:“MI:0914”(association) | 0.350 |
| EPHA1 | MYO1B | psi-mi:“MI:0914”(association) | 0.350 |
| FGFR2 | LANCL1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (92): RRM2B (Two-hybrid), RRM2B (Two-hybrid), RRM2 (Affinity Capture-MS), INPPL1 (Affinity Capture-MS), RRM2B (Affinity Capture-MS), RRM2B (Biochemical Activity), RRM2B (Affinity Capture-MS), RRM2B (Affinity Capture-MS), RNF41 (Two-hybrid), RRM2 (Affinity Capture-MS), RRM2B (Affinity Capture-MS), INPPL1 (Affinity Capture-MS), RRM2B (Affinity Capture-MS), TPM2 (Affinity Capture-MS), RRM2B (Affinity Capture-MS)
ESM2 similar proteins: A6MZM2, G1SKZ8, G1TSG1, O48650, O60739, P35268, P41568, P42678, P47198, P47826, P48597, P50886, P50894, P53026, P53027, P55769, P55770, P56330, P61220, P62084, P62906, P62907, P67984, P67985, Q0D5W6, Q28IL6, Q3B8S0, Q4R4X9, Q4R5C6, Q4R5I3, Q4R5P3, Q4R741, Q5E9E6, Q5R9G0, Q5XH16, Q6P8E9, Q6PC69, Q6PEE3, Q7LG56, Q7ZYS8
Diamond homologs: A0A7H0DN21, O15910, O46310, O57175, P07201, P09938, P0C8I0, P0C8I1, P0C8I2, P0DKH2, P0DKH3, P0DSS7, P0DSS8, P11157, P11158, P20493, P26713, P28847, P29883, P31350, P32209, P36603, P42170, P42492, P42521, P48592, P49723, P49730, P50649, P50650, P50651, P79733, Q4KLN6, Q4R741, Q4R7Q7, Q5R9G0, Q60561, Q6PEE3, Q6R7K3, Q6UDJ1
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| ATM | up-regulates | RRM2B | phosphorylation |
| “UV stress” | up-regulates | RRM2B | |
| RRM2B | “up-regulates activity” | RRM1 | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 51 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| G2/M Checkpoints | 5 | 19.2× | 3e-04 |
| Regulation of TP53 Activity | 5 | 19.0× | 3e-04 |
| Cell Cycle Checkpoints | 7 | 17.7× | 4e-05 |
| G2/M DNA damage checkpoint | 5 | 17.2× | 3e-04 |
| Regulation of TP53 Activity through Phosphorylation | 5 | 16.8× | 3e-04 |
| Transcriptional Regulation by TP53 | 5 | 8.9× | 3e-03 |
| Cell Cycle | 7 | 7.2× | 9e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| protein-containing complex assembly | 5 | 11.9× | 5e-03 |
| DNA repair | 6 | 8.0× | 5e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
431 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 17 |
| Likely pathogenic | 21 |
| Uncertain significance | 175 |
| Likely benign | 101 |
| Benign | 47 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1201518 | NM_015713.5(RRM2B):c.550+1G>A | Pathogenic |
| 215092 | NM_015713.5(RRM2B):c.599G>A (p.Gly200Glu) | Pathogenic |
| 215099 | NM_015713.5(RRM2B):c.205-2A>G | Pathogenic |
| 2709678 | NM_015713.5(RRM2B):c.504del (p.Ala169fs) | Pathogenic |
| 2966802 | NM_015713.5(RRM2B):c.158G>A (p.Trp53Ter) | Pathogenic |
| 30432 | NM_015713.5(RRM2B):c.950del (p.Ser316_Leu317insTer) | Pathogenic |
| 30433 | NM_015713.5(RRM2B):c.965dup (p.Asn322fs) | Pathogenic |
| 3614432 | NM_015713.5(RRM2B):c.432_435del (p.Tyr145fs) | Pathogenic |
| 3653141 | NM_015713.5(RRM2B):c.439A>T (p.Arg147Ter) | Pathogenic |
| 4845340 | NM_015713.5(RRM2B):c.414_415del (p.Tyr138_Ser139delinsTer) | Pathogenic |
| 5386 | NM_015713.5(RRM2B):c.850C>T (p.Gln284Ter) | Pathogenic |
| 5387 | NM_015713.5(RRM2B):c.322-2A>G | Pathogenic |
| 5388 | NM_015713.5(RRM2B):c.580G>A (p.Glu194Lys) | Pathogenic |
| 5390 | NM_015713.5(RRM2B):c.707G>T (p.Cys236Phe) | Pathogenic |
| 5391 | NM_015713.5(RRM2B):c.979C>T (p.Arg327Ter) | Pathogenic |
| 5394 | NM_015713.5(RRM2B):c.362G>A (p.Arg121His) | Pathogenic |
| 830053 | NM_015713.5(RRM2B):c.527_528insG (p.Ile176fs) | Pathogenic |
| 1030272 | NM_015713.5(RRM2B):c.48+268_48+269delinsAA | Likely pathogenic |
| 132112 | NM_015713.5(RRM2B):c.328C>T (p.Arg110Cys) | Likely pathogenic |
| 132123 | NM_015713.5(RRM2B):c.846G>C (p.Met282Ile) | Likely pathogenic |
| 1524868 | NM_015713.5(RRM2B):c.455+1G>A | Likely pathogenic |
| 215100 | NM_015713.5(RRM2B):c.208G>T (p.Asp70Tyr) | Likely pathogenic |
| 216993 | NM_015713.5(RRM2B):c.635_636insAAG (p.Gly212_Leu213insSer) | Likely pathogenic |
| 2687854 | NM_015713.5(RRM2B):c.184T>N (p.Ser62Xaa) | Likely pathogenic |
| 2719924 | NM_015713.5(RRM2B):c.684+1G>A | Likely pathogenic |
| 2834623 | NM_015713.5(RRM2B):c.205-1G>C | Likely pathogenic |
| 3062047 | NM_015713.5(RRM2B):c.472G>A (p.Ala158Thr) | Likely pathogenic |
| 3064800 | NM_015713.5(RRM2B):c.94G>T (p.Glu32Ter) | Likely pathogenic |
| 3068322 | NM_015713.5(RRM2B):c.49-2A>G | Likely pathogenic |
| 3250467 | NM_015713.5(RRM2B):c.540del (p.Lys180fs) | Likely pathogenic |
SpliceAI
1139 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 8:102208146:T:TA | donor_gain | 1.0000 |
| 8:102208164:T:C | donor_gain | 1.0000 |
| 8:102212770:CATTA:C | donor_loss | 1.0000 |
| 8:102212771:ATTAC:A | donor_loss | 1.0000 |
| 8:102212772:TTACC:T | donor_loss | 1.0000 |
| 8:102212773:TA:T | donor_loss | 1.0000 |
| 8:102212774:ACCTT:A | donor_loss | 1.0000 |
| 8:102212885:AACTC:A | acceptor_gain | 1.0000 |
| 8:102212887:CTC:C | acceptor_gain | 1.0000 |
| 8:102212888:TCCT:T | acceptor_loss | 1.0000 |
| 8:102212889:CCTGG:C | acceptor_loss | 1.0000 |
| 8:102212890:C:CA | acceptor_loss | 1.0000 |
| 8:102212895:A:AC | acceptor_gain | 1.0000 |
| 8:102212902:C:CT | acceptor_gain | 1.0000 |
| 8:102212903:A:T | acceptor_gain | 1.0000 |
| 8:102214043:T:TA | donor_gain | 1.0000 |
| 8:102214044:C:A | donor_gain | 1.0000 |
| 8:102218812:A:AC | donor_gain | 1.0000 |
| 8:102218813:C:CC | donor_gain | 1.0000 |
| 8:102224044:A:AC | donor_gain | 1.0000 |
| 8:102224045:C:CC | donor_gain | 1.0000 |
| 8:102224139:CC:C | acceptor_gain | 1.0000 |
| 8:102224140:CC:C | acceptor_gain | 1.0000 |
| 8:102224880:AATAC:A | donor_loss | 1.0000 |
| 8:102224881:ATAC:A | donor_loss | 1.0000 |
| 8:102224882:TACC:T | donor_loss | 1.0000 |
| 8:102224883:ACC:A | donor_loss | 1.0000 |
| 8:102225015:CCAC:C | acceptor_gain | 1.0000 |
| 8:102225016:CAC:C | acceptor_gain | 1.0000 |
| 8:102225016:CACC:C | acceptor_gain | 1.0000 |
AlphaMissense
2342 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 8:102218892:A:C | F202L | 0.999 |
| 8:102218892:A:T | F202L | 0.999 |
| 8:102218894:A:G | F202L | 0.999 |
| 8:102232163:A:G | W64R | 0.999 |
| 8:102232163:A:T | W64R | 0.999 |
| 8:102218814:T:A | E228D | 0.998 |
| 8:102218814:T:G | E228D | 0.998 |
| 8:102218904:G:C | F198L | 0.998 |
| 8:102218904:G:T | F198L | 0.998 |
| 8:102218906:A:G | F198L | 0.998 |
| 8:102224940:G:C | H134D | 0.998 |
| 8:102208198:A:G | Y331H | 0.997 |
| 8:102208217:A:C | F324L | 0.997 |
| 8:102208217:A:T | F324L | 0.997 |
| 8:102208219:A:G | F324L | 0.997 |
| 8:102208220:G:C | F323L | 0.997 |
| 8:102208220:G:T | F323L | 0.997 |
| 8:102208222:A:G | F323L | 0.997 |
| 8:102214152:G:C | H231D | 0.997 |
| 8:102218818:T:A | D227V | 0.997 |
| 8:102218818:T:G | D227A | 0.997 |
| 8:102218819:C:G | D227H | 0.997 |
| 8:102218926:G:T | A191D | 0.997 |
| 8:102224947:C:A | E131D | 0.997 |
| 8:102224947:C:G | E131D | 0.997 |
| 8:102224948:T:A | E131V | 0.997 |
| 8:102225921:A:C | N106K | 0.997 |
| 8:102225921:A:T | N106K | 0.997 |
| 8:102232161:C:A | W64C | 0.997 |
| 8:102232161:C:G | W64C | 0.997 |
dbSNP variants (sampled 300 via entrez): RS1000042495 (8:102239407 G>A,T), RS1000056293 (8:102233266 T>C,G), RS1000258970 (8:102208993 T>G), RS1000311198 (8:102208626 T>C,G), RS1000352405 (8:102219618 G>T), RS1000384955 (8:102219237 C>A,G), RS1000568235 (8:102221976 G>A), RS1000634609 (8:102226345 A>T), RS1000730872 (8:102228480 C>T), RS1000919508 (8:102215023 T>A,C,G), RS1000992716 (8:102213163 G>A), RS1001065537 (8:102206612 T>G), RS1001183151 (8:102228207 G>A), RS1001205975 (8:102239367 T>C), RS1001277887 (8:102213438 T>C)
Disease associations
OMIM: gene MIM:604712 | disease phenotypes: MIM:612075, MIM:268315, MIM:613077
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| mitochondrial DNA depletion syndrome 8a | Definitive | Autosomal recessive |
| progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 5 | Strong | Autosomal dominant |
| autosomal dominant progressive external ophthalmoplegia | Supportive | Autosomal dominant |
| mitochondrial neurogastrointestinal encephalomyopathy | Supportive | Autosomal recessive |
| adult-onset chronic progressive external ophthalmoplegia with mitochondrial myopathy | Supportive | Autosomal dominant |
| Kearns-Sayre syndrome | Supportive | Autosomal recessive |
Mondo (12): mitochondrial DNA depletion syndrome 8a (MONDO:0012792), rod-cone dystrophy, sensorineural deafness, and Fanconi-type renal dysfunction (MONDO:0010000), progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 5 (MONDO:0013117), idiopathic camptocormia (MONDO:0015271), mitochondrial disease (MONDO:0044970), progressive external ophthalmoplegia (MONDO:0005181), sensorineural hearing loss disorder (MONDO:0020678), adult Fanconi syndrome (MONDO:0060778), autosomal dominant progressive external ophthalmoplegia (MONDO:0008003), mitochondrial neurogastrointestinal encephalomyopathy (MONDO:0017575), adult-onset chronic progressive external ophthalmoplegia with mitochondrial myopathy (MONDO:0018002), Kearns-Sayre syndrome (MONDO:0010787)
Orphanet (4): Mitochondrial DNA depletion syndrome, encephalomyopathic form with renal tubulopathy (Orphanet:255235), Idiopathic camptocormia (Orphanet:1320), Mitochondrial disease (Orphanet:68380), Progressive external ophthalmoplegia (Orphanet:520820)
HPO phenotypes
189 total (30 of 189 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000017 | Nocturia |
| HP:0000044 | Hypogonadotropic hypogonadism |
| HP:0000114 | Proximal tubulopathy |
| HP:0000218 | High palate |
| HP:0000338 | Hypomimic face |
| HP:0000365 | Hearing impairment |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000467 | Neck muscle weakness |
| HP:0000496 | Abnormality of eye movement |
| HP:0000501 | Glaucoma |
| HP:0000505 | Visual impairment |
| HP:0000508 | Ptosis |
| HP:0000510 | Rod-cone dystrophy |
| HP:0000518 | Cataract |
| HP:0000543 | Optic disc pallor |
| HP:0000544 | External ophthalmoplegia |
| HP:0000565 | Esotropia |
| HP:0000580 | Pigmentary retinopathy |
| HP:0000590 | Progressive external ophthalmoplegia |
| HP:0000597 | Ophthalmoparesis |
| HP:0000602 | Ophthalmoplegia |
| HP:0000648 | Optic atrophy |
| HP:0000716 | Depression |
| HP:0000726 | Dementia |
| HP:0000739 | Anxiety |
| HP:0000750 | Delayed speech and language development |
| HP:0000815 | Hypergonadotropic hypogonadism |
| HP:0000819 | Diabetes mellitus |
GWAS associations
7 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004147_19 | Chronic obstructive pulmonary disease | 4.000000e-06 |
| GCST005993_57 | Mean corpuscular hemoglobin | 3.000000e-10 |
| GCST006011_27 | Mean corpuscular volume | 3.000000e-15 |
| GCST006585_1724 | Blood protein levels | 1.000000e-10 |
| GCST006585_2401 | Blood protein levels | 7.000000e-31 |
| GCST008940_2 | Chromosomal aberration frequency (total) | 1.000000e-06 |
| GCST90002403_636 | Red blood cell count | 3.000000e-11 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004527 | mean corpuscular hemoglobin |
| EFO:0009860 | chromosomal aberration frequency |
| EFO:0004305 | erythrocyte count |
MeSH disease descriptors (6)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D007625 | Kearns-Sayre Syndrome | C05.651.460.700.500; C10.292.562.750.250.500; C10.597.622.447.511.500; C10.668.491.500.700.500; C11.590.472.250.500; C11.768.585.658.500.627; C14.280.238.510; C18.452.660.560.700.500; C23.550.291.500.688.500; C23.888.592.636.447.511.500 |
| D017246 | Ophthalmoplegia, Chronic Progressive External | C05.651.460.700; C10.292.562.750.250; C10.597.622.447.511; C10.668.491.500.700; C11.590.472.250; C18.452.660.560.700; C23.550.291.500.688; C23.888.592.636.447.511 |
| C537968 | Camptocormia (supp.) | |
| C567768 | Progressive External Ophthalmoplegia With Mitochondrial Dna Deletions, Autosomal Dominant, 5 (supp.) | |
| C563575 | Progressive External Ophthalmoplegia with Mitochondrial DNA Deletions, Autosomal Dominant, 1 (supp.) | |
| C564829 | Rod-Cone Dystrophy, Sensorineural Deafness, and Fanconi-Type Renal Dysfunction (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL2095215 (PROTEIN COMPLEX GROUP), CHEMBL3301398 (PROTEIN COMPLEX)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 4,524 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL231616 | TRIAPINE | 3 | 4,524 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
1 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs1265138 | Efficacy | 3 | cladribine;cytarabine | Leukemia;Myeloid;Acute |
PharmGKB variants
4 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs1265138 | RRM2B | 3 | 1.75 | 1 | cladribine;cytarabine |
| rs2607659 | RRM2B | 0.00 | 0 | ||
| rs16918482 | RRM2B | 0.00 | 0 | ||
| rs2607658 | RRM2B | 0.00 | 0 |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — 1.17.4.1 Ribonucleoside-diphosphate reductases
ChEMBL bioactivities
346 potent at pChembl≥5 of 385 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 9.22 | IC50 | 0.6 | nM | CHEMBL336289 |
| 9.15 | IC50 | 0.7 | nM | CHEMBL96993 |
| 9.00 | IC50 | 1 | nM | CHEMBL98729 |
| 8.70 | IC50 | 2 | nM | CHEMBL1169533 |
| 8.52 | IC50 | 3 | nM | CHEMBL133754 |
| 8.52 | IC50 | 3 | nM | CHEMBL305199 |
| 8.40 | IC50 | 4 | nM | CHEMBL95998 |
| 8.30 | IC50 | 5 | nM | CHEMBL95766 |
| 8.30 | IC50 | 5 | nM | CHEMBL335164 |
| 8.22 | IC50 | 6 | nM | CHEMBL134961 |
| 8.19 | IC50 | 6.4 | nM | CHEMBL120710 |
| 8.15 | IC50 | 7 | nM | CHEMBL133827 |
| 8.15 | IC50 | 7 | nM | CHEMBL37210 |
| 8.12 | IC50 | 7.5 | nM | CHEMBL431851 |
| 7.82 | IC50 | 15 | nM | CHEMBL71945 |
| 7.75 | IC50 | 18 | nM | CHEMBL443029 |
| 7.70 | IC50 | 20 | nM | CHEMBL6001460 |
| 7.70 | IC50 | 20 | nM | CHEMBL1169532 |
| 7.66 | IC50 | 22 | nM | CHEMBL96993 |
| 7.66 | IC50 | 22 | nM | CHEMBL439791 |
| 7.66 | IC50 | 22 | nM | CHEMBL120060 |
| 7.62 | IC50 | 24 | nM | CHEMBL305229 |
| 7.57 | IC50 | 27 | nM | CHEMBL131682 |
| 7.52 | IC50 | 30 | nM | CHEMBL5941178 |
| 7.52 | IC50 | 30 | nM | CHEMBL5913113 |
| 7.47 | IC50 | 34 | nM | CHEMBL414818 |
| 7.44 | IC50 | 36 | nM | CHEMBL118524 |
| 7.43 | IC50 | 37 | nM | CHEMBL98729 |
| 7.40 | IC50 | 40 | nM | CHEMBL5958580 |
| 7.40 | IC50 | 40 | nM | CHEMBL5777432 |
| 7.40 | IC50 | 40 | nM | CHEMBL132130 |
| 7.37 | IC50 | 43 | nM | CHEMBL99950 |
| 7.30 | IC50 | 50 | nM | CHEMBL5813221 |
| 7.30 | IC50 | 50 | nM | CHEMBL5797621 |
| 7.30 | IC50 | 50 | nM | CHEMBL6028518 |
| 7.30 | IC50 | 50 | nM | CHEMBL5987707 |
| 7.26 | IC50 | 55 | nM | CHEMBL1169533 |
| 7.22 | IC50 | 60 | nM | CHEMBL5775741 |
| 7.22 | IC50 | 60 | nM | CHEMBL5869217 |
| 7.22 | IC50 | 60 | nM | CHEMBL5844268 |
| 7.22 | IC50 | 60 | nM | CHEMBL5793033 |
| 7.22 | IC50 | 60 | nM | CHEMBL5960405 |
| 7.22 | IC50 | 60 | nM | CHEMBL5824595 |
| 7.22 | IC50 | 60 | nM | CHEMBL5935086 |
| 7.22 | IC50 | 60 | nM | CHEMBL6057994 |
| 7.22 | IC50 | 60 | nM | CHEMBL5813221 |
| 7.22 | IC50 | 60 | nM | CHEMBL5988394 |
| 7.22 | IC50 | 60 | nM | CHEMBL6019064 |
| 7.22 | IC50 | 60 | nM | CHEMBL6058380 |
| 7.22 | IC50 | 60 | nM | CHEMBL5857144 |
PubChem BioAssay actives
52 with measured affinity, of 369 total; 46 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-3,3-dimethyl-2-(pentan-3-ylcarbamoylamino)butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4,4-dimethylpentanoic acid | 197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme. | ic50 | 0.0006 | uM |
| (2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzyl-3-phenylpropanoyl)amino]-3-methylbutanoyl]amino]-3-methylbutanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-3-carboxypropanoyl]amino]-4-methylpentanoic acid | 198112: In vitro inhibitory activity against HSV ribonucleotide reductase | ic50 | 0.0007 | uM |
| 1-[(1S)-2-[[(1S)-1-carboxy-3-methylbutyl]amino]-1-[[(2S)-2-[[(2S)-3-methyl-2-[[(2S)-3-methyl-2-(3-phenylpropanoylamino)butanoyl]amino]butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-2-oxoethyl]cyclopentane-1-carboxylic acid | 198112: In vitro inhibitory activity against HSV ribonucleotide reductase | ic50 | 0.0010 | uM |
| (2R)-2-[[(2R)-3-carboxy-2-[[(2S)-2-[[(2R)-2-[[(2R,6S)-2,6-dimethylcyclohexyl]carbamoylamino]-3-methylbutanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid | 197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme. | ic50 | 0.0020 | uM |
| (2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-3,3-dimethyl-2-(pentan-3-ylcarbamoylamino)butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid | 197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme. | ic50 | 0.0030 | uM |
| (2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-3,3-dimethyl-2-(pentan-3-ylcarbamoylamino)butanoyl]amino]-5,5-dimethyl-4-oxohexanoyl]amino]propanoyl]amino]-4-methylpentanoic acid | 197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme. | ic50 | 0.0030 | uM |
| (2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-3,3-dimethyl-2-[[(2S)-3-methyl-2-(3-phenylpropanoylamino)butanoyl]amino]butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid | 198112: In vitro inhibitory activity against HSV ribonucleotide reductase | ic50 | 0.0040 | uM |
| (2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-3-methyl-2-[[(2S)-3-methyl-2-(3-phenylpropanoylamino)butanoyl]amino]butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4,4-dimethylpentanoic acid | 198112: In vitro inhibitory activity against HSV ribonucleotide reductase | ic50 | 0.0050 | uM |
| (2S)-2-[[(2S)-3-carboxy-2-[[(2R,5S)-2-(3,3-dimethyl-2-oxobutyl)-6,6-dimethyl-4-oxo-5-(pentan-3-ylcarbamoylamino)heptanoyl]amino]propanoyl]amino]-4-methylpentanoic acid | 197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme. | ic50 | 0.0050 | uM |
| (3S)-3-[[(2S)-2-[[(2S)-3,3-dimethyl-2-(pentan-3-ylcarbamoylamino)butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-4-[[(2S)-1-hydroxy-4,4-dimethylpentan-2-yl]amino]-4-oxobutanoic acid | 197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme. | ic50 | 0.0060 | uM |
| 1-[(1S)-2-[[(1S)-1-carboxy-3-methylbutyl]amino]-1-[[(2S)-2-[[(2S)-2-(2-ethylbutanoylamino)-3,3-dimethylbutanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-2-oxoethyl]cyclopent-3-ene-1-carboxylic acid | 198112: In vitro inhibitory activity against HSV ribonucleotide reductase | ic50 | 0.0064 | uM |
| (2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-2-(heptan-4-ylcarbamoylamino)-3-methylbutanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid | 197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme. | ic50 | 0.0070 | uM |
| (2S)-2-[[(2S)-3-carboxy-2-[[(2S,5S)-6,6-dimethyl-4-oxo-2-(2-oxo-2-pyrrolidin-1-ylethyl)-5-(pentan-3-ylcarbamoylamino)heptanoyl]amino]propanoyl]amino]-4-methylpentanoic acid | 197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme. | ic50 | 0.0070 | uM |
| (2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-3-methyl-2-[[(2S)-3-methyl-2-[methyl(3-phenylpropanoyl)amino]butanoyl]amino]butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid | 198112: In vitro inhibitory activity against HSV ribonucleotide reductase | ic50 | 0.0075 | uM |
| (2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-3-methyl-2-(pentan-3-ylcarbamoylamino)butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid | 197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme. | ic50 | 0.0150 | uM |
| (3S)-4-[[(3R)-2,2-dimethylpentan-3-yl]amino]-3-[[(2S)-2-[[(2S)-3,3-dimethyl-2-(pentan-3-ylcarbamoylamino)butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-4-oxobutanoic acid | 197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme. | ic50 | 0.0180 | uM |
| (2R)-2-[[(2R)-3-carboxy-2-[[(2S)-2-[[(2R)-2-[[(2S,6S)-2,6-dimethylcyclohexyl]carbamoylamino]-3-methylbutanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid;(2R)-2-[[(2R)-3-carboxy-2-[[(2S)-2-[[(2R)-2-[[(2R,6R)-2,6-dimethylcyclohexyl]carbamoylamino]-3-methylbutanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid | 197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme. | ic50 | 0.0200 | uM |
| (2S)-2-[[(2S)-2-[[(2S)-4-amino-2-[[(2S)-2-[[(2S)-2-[(2-benzyl-3-phenylpropanoyl)-methylamino]-3-methylbutanoyl]amino]-3-methylbutanoyl]amino]-4-oxobutanoyl]amino]-3-carboxypropanoyl]amino]-4-methylpentanoic acid | 198112: In vitro inhibitory activity against HSV ribonucleotide reductase | ic50 | 0.0220 | uM |
| (2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-cyclohexyl-2-(3-phenylpropanoylamino)acetyl]amino]-3-methylbutanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid | 198112: In vitro inhibitory activity against HSV ribonucleotide reductase | ic50 | 0.0220 | uM |
| (2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-3-methyl-2-[[(2S)-3-methyl-2-(3-phenylpropanoylamino)butanoyl]amino]butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid | 197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme. | ic50 | 0.0240 | uM |
| (3S)-4-[[(2R)-3,3-dimethylbutan-2-yl]amino]-3-[[(2S)-2-[[(2S)-3,3-dimethyl-2-(pentan-3-ylcarbamoylamino)butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-4-oxobutanoic acid | 197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme. | ic50 | 0.0270 | uM |
| (3S)-4-[[(2S)-1-hydroxy-4,4-dimethylpentan-2-yl]amino]-3-[[(2S)-2-[[(2S)-3-methyl-2-[[(2S)-3-methyl-2-(3-phenylpropanoylamino)butanoyl]amino]butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-4-oxobutanoic acid | 198112: In vitro inhibitory activity against HSV ribonucleotide reductase | ic50 | 0.0340 | uM |
| (2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-2-[[(2S)-3,3-dimethyl-2-(3-phenylpropanoylamino)butanoyl]amino]-3-methylbutanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid | 198112: In vitro inhibitory activity against HSV ribonucleotide reductase | ic50 | 0.0360 | uM |
| (3S)-3-[[(2S)-2-[[(2S)-3,3-dimethyl-2-(pentan-3-ylcarbamoylamino)butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-4-(2,2-dimethylpropylamino)-4-oxobutanoic acid | 197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme. | ic50 | 0.0400 | uM |
| (3S)-4-[[(1S)-1-carboxy-3-methylbutyl]amino]-3-[[(2S)-2-[[(2S)-2-(2-ethylbutanoylamino)-3,3-dimethylbutanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-2,2-dimethyl-4-oxobutanoic acid | 198112: In vitro inhibitory activity against HSV ribonucleotide reductase | ic50 | 0.0430 | uM |
| (2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-3-methyl-2-[[(2S,3S)-3-methyl-2-(3-phenylpropanoylamino)pentanoyl]amino]butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid | 198112: In vitro inhibitory activity against HSV ribonucleotide reductase | ic50 | 0.0610 | uM |
| (3S)-4-(3,3-dimethylbutylamino)-3-[[(2S)-2-[[(2S)-3,3-dimethyl-2-(pentan-3-ylcarbamoylamino)butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-4-oxobutanoic acid | 197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme. | ic50 | 0.1000 | uM |
| (2S)-2-[[(2S)-2-[[(2S)-4-amino-2-[[(2S)-2-[[(2S)-2-[(2-benzyl-3-phenylpropanoyl)amino]-3-methylbutanoyl]amino]-3-methylbutanoyl]amino]-4-oxobutanoyl]amino]-3-carboxypropanoyl]amino]-4-methylpentanoic acid | 198112: In vitro inhibitory activity against HSV ribonucleotide reductase | ic50 | 0.1800 | uM |
| (2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-3-methyl-2-[[(2S)-2-(3-phenylpropanoylamino)butanoyl]amino]butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid | 198112: In vitro inhibitory activity against HSV ribonucleotide reductase | ic50 | 0.3400 | uM |
| (3S)-3-[[(2S)-2-[[(2S)-3,3-dimethyl-2-(pentan-3-ylcarbamoylamino)butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-4-(3-methylbutylamino)-4-oxobutanoic acid | 197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme. | ic50 | 0.3500 | uM |
| (2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-3-methyl-2-(propan-2-ylcarbamoylamino)butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid | 197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme. | ic50 | 0.4400 | uM |
| (2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-2-(cyclohexylcarbamoylamino)-3-methylbutanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid | 197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme. | ic50 | 0.5000 | uM |
| (2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-2-(2-ethylbutanoylamino)-3-methylbutanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid | 197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme. | ic50 | 0.8600 | uM |
| (2S)-2-[[(2S)-2-[[(2S)-4-amino-2-[[(2S)-3-methyl-2-[[(2S)-3-methyl-2-[[(2R)-2-methyl-3-phenylpropanoyl]amino]butanoyl]amino]butanoyl]amino]-4-oxobutanoyl]amino]-3-carboxypropanoyl]amino]-4-methylpentanoic acid | 198112: In vitro inhibitory activity against HSV ribonucleotide reductase | ic50 | 0.8600 | uM |
| (2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-acetamido-3-methylbutanoyl]amino]-3-methylbutanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-3-carboxypropanoyl]amino]-4-methylpentanoic acid | 198112: In vitro inhibitory activity against HSV ribonucleotide reductase | ic50 | 0.8800 | uM |
| (3S)-3-[[(2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[2-[9H-fluoren-9-ylmethoxycarbonyl(methyl)amino]-2-phenylacetyl]amino]-4-methylpentanoyl]amino]propanoyl]amino]-3-cyclohexylpropanoyl]amino]-4-[[(1S)-1-carboxy-2-phenylethyl]amino]-4-oxobutanoic acid | 242343: Inhibition of mammalian ribonucleotide reductase in a standard dTTP-dependent GDP reductase assay | ic50 | 1.9000 | uM |
| (3S)-3-[[(2S)-2-[[(2S)-3,3-dimethyl-2-(pentan-3-ylcarbamoylamino)butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-4-(2-methylpropylamino)-4-oxobutanoic acid | 197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme. | ic50 | 1.9000 | uM |
| (3S)-4-[[(3S)-2,2-dimethylpentan-3-yl]amino]-3-[[(2S)-2-[[(2S)-3,3-dimethyl-2-(pentan-3-ylcarbamoylamino)butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-4-oxobutanoic acid | 197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme. | ic50 | 2.0000 | uM |
| (4S)-5-[[(2S)-1-[[(2S)-3-carboxy-1-[[(1S)-1-carboxy-2-phenylethyl]amino]-1-oxopropan-2-yl]amino]-3-cyclohexyl-1-oxopropan-2-yl]amino]-4-[[(2S)-2-[[3-(9H-fluoren-9-ylmethoxy)-3-oxo-2-phenylpropanoyl]amino]-4-methylpentanoyl]amino]-5-oxopentanoic acid | 242343: Inhibition of mammalian ribonucleotide reductase in a standard dTTP-dependent GDP reductase assay | ic50 | 2.4000 | uM |
| (3S)-3-[[(2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[3-(9H-fluoren-9-ylmethoxy)-3-oxo-2-phenylpropanoyl]amino]-4-methylpentanoyl]amino]propanoyl]amino]-3-cyclohexylpropanoyl]amino]-4-[[(1S)-1-carboxy-2-phenylethyl]amino]-4-oxobutanoic acid | 242343: Inhibition of mammalian ribonucleotide reductase in a standard dTTP-dependent GDP reductase assay | ic50 | 2.4000 | uM |
| (3S)-4-[[(2S)-3,3-dimethylbutan-2-yl]amino]-3-[[(2S)-2-[[(2S)-3,3-dimethyl-2-(pentan-3-ylcarbamoylamino)butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-4-oxobutanoic acid | 197982: Inhibitory effect was evaluated on Herpes simplex virus (HSV) ribonucleotide reductase (RR) enzyme. | ic50 | 2.7000 | uM |
| 1-[(1S)-1-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzyl-3-phenylpropanoyl)-methylamino]-3-methylbutanoyl]amino]-3,3-dimethylbutanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-2-[[(2S)-1-hydroxy-4,4-dimethylpentan-2-yl]amino]-2-oxoethyl]cyclopentane-1-carboxylic acid | 41530: Inhibitory activity against HSV-1 in baby hamster kidney cell | ec50 | 3.1000 | uM |
| (2S)-2-[[(2S)-2-[[(2S)-4-amino-2-[[(2S)-3-methyl-2-[[(2S)-3-methyl-2-(3-phenylpropanoylamino)butanoyl]amino]butanoyl]amino]-4-oxobutanoyl]amino]-3-carboxypropanoyl]amino]-4-methylpentanoic acid | 198112: In vitro inhibitory activity against HSV ribonucleotide reductase | ic50 | 4.0000 | uM |
| 1-[(1S)-1-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzyl-3-phenylpropanoyl)-methylamino]-3-methylbutanoyl]amino]-3-methylbutanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-2-[[(2S)-1-hydroxy-4,4-dimethylpentan-2-yl]amino]-2-oxoethyl]cyclopentane-1-carboxylic acid | 41531: Inhibitory activity against HSV-2 in baby hamster kidney cell | ec50 | 6.5000 | uM |
| 1-[(1S)-1-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzyl-3-phenylpropanoyl)-methylamino]-3-methylbutanoyl]amino]-3,3-dimethylbutanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]-2-[[(2S)-1-hydroxy-4-methylpentan-2-yl]amino]-2-oxoethyl]cyclopentane-1-carboxylic acid | 41530: Inhibitory activity against HSV-1 in baby hamster kidney cell | ec50 | 7.3000 | uM |
| (2S)-2-[[(2S)-3-carboxy-2-[[(2S)-2-[[(2S)-3-methyl-2-[[(2S)-2-(3-phenylpropanoylamino)propanoyl]amino]butanoyl]amino]-4-oxo-4-pyrrolidin-1-ylbutanoyl]amino]propanoyl]amino]-4-methylpentanoic acid | 198112: In vitro inhibitory activity against HSV ribonucleotide reductase | ic50 | 8.8000 | uM |
CTD chemical–gene interactions
110 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects expression, affects cotreatment, increases expression | 9 |
| Cisplatin | affects cotreatment, increases expression, decreases expression, affects reaction | 7 |
| sodium arsenite | affects expression, decreases expression, increases expression | 6 |
| Aflatoxin B1 | increases expression, affects expression | 6 |
| Doxorubicin | affects expression, affects binding, decreases reaction, increases reaction, increases expression (+1 more) | 5 |
| Fluorouracil | increases expression, decreases response to substance, affects reaction | 4 |
| Resveratrol | affects cotreatment, increases expression | 3 |
| Air Pollutants | affects expression, increases abundance, decreases expression, increases expression | 3 |
| Cadmium Chloride | decreases expression, increases abundance, increases expression | 3 |
| Particulate Matter | decreases expression, increases abundance, increases expression | 3 |
| bisphenol A | increases abundance, decreases expression, affects cotreatment, affects expression | 2 |
| Methyl Methanesulfonate | increases expression | 2 |
| Methylnitronitrosoguanidine | increases expression, increases reaction, affects expression, affects localization, decreases reaction | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Tunicamycin | increases expression | 2 |
| Valproic Acid | increases expression, affects expression | 2 |
| 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide | increases expression | 2 |
| Cyclosporine | increases expression | 2 |
| 6,7-dimethoxy-2-(pyrrolidin-1-yl)-N-(5-(pyrrolidin-1-yl)pentyl)quinazolin-4-amine | increases expression | 1 |
| FR900359 | decreases phosphorylation | 1 |
| bisphenol F | increases expression | 1 |
| ginger extract | increases abundance, affects cotreatment, affects expression | 1 |
| dicrotophos | decreases expression | 1 |
| bismuth tripotassium dicitrate | increases expression | 1 |
| chloroacetaldehyde | affects expression | 1 |
| methylmercuric chloride | increases expression | 1 |
| oxybenzone | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| propionaldehyde | increases expression | 1 |
| benzo(b)fluoranthene | affects cotreatment, increases expression | 1 |
ChEMBL screening assays
47 unique, capped per target: 44 binding, 3 functional
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1775985 | Binding | Inhibition of human recombinant ribonucleotide reductase M2/M1 expressed in Escherichia coli BL21 (DE3) after 30 mins by [3H]CDP reduction method | Synthesis and biological activity of novel N6-substituted and 2,N6-disubstituted adenine ribo- and 3’-C-methyl-ribonucleosides as antitumor agents. — Eur J Med Chem |
| CHEMBL652605 | Functional | Inhibitory activity against HSV-1 in baby hamster kidney cell | Peptidomimetic inhibitors of herpes simplex virus ribonucleotide reductase: a new class of antiviral agents. — J Med Chem |
Cellosaurus cell lines
4 cell lines: 4 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1E3 | Abcam HCT 116 RRM2B KO | Cancer cell line | Male |
| CVCL_B2EA | Abcam HeLa RRM2B KO | Cancer cell line | Female |
| CVCL_TJ77 | HAP1 RRM2B (-) 1 | Cancer cell line | Male |
| CVCL_TJ78 | HAP1 RRM2B (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
201 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT03351998 | PHASE4 | COMPLETED | Impact of Statin Therapy on Muscle Mitochondrial Function and Aerobic Capacity |
| NCT00432744 | PHASE3 | COMPLETED | Phase III Trial of Coenzyme Q10 in Mitochondrial Disease |
| NCT05162768 | PHASE3 | COMPLETED | Study to Evaluate Efficacy and Safety of Elamipretide in Subjects With Primary Mitochondrial Disease From Nuclear DNA Mutations (nPMD) |
| NCT06451757 | PHASE3 | RECRUITING | KHENERFIN Study: A Trial to Evaluate the Efficacy and Safety of Sonlicromanol in Primary Mitochondrial Diseases |
| NCT01655212 | PHASE3 | TERMINATED | Congenital Cytomegalovirus: Efficacy of Antiviral Treatment in a Randomized Controlled Trial |
| NCT02005822 | PHASE3 | COMPLETED | Congenital Cytomegalovirus: Efficacy of Antiviral Treatment |
| NCT03374514 | PHASE3 | UNKNOWN | Cochlear Electrical Impedance and the Effect of Topical Dexamethasone on Cochlear Implant Surgery |
| NCT02171104 | PHASE2 | ACTIVE_NOT_RECRUITING | MT2013-31: Allo HCT for Metabolic Disorders and Severe Osteopetrosis |
| NCT02398201 | PHASE2 | COMPLETED | A Study of Bezafibrate in Mitochondrial Myopathy |
| NCT02473445 | PHASE2 | TERMINATED | A Long-term Extension of Study RP103-MITO-001 (NCT02023866) to Assess Cysteamine Bitartrate Delayed-release Capsules (RP103) in Children With Inherited Mitochondrial Disease |
| NCT02500628 | PHASE2 | COMPLETED | Heart Rate Variability in Response to Metformin Challenge |
| NCT02805790 | PHASE2 | COMPLETED | Safety, Tolerability, Efficacy of MTP-131 for Treatment of Mitochondrial Disease in Subjects From the MMPOWER Study |
| NCT02909400 | PHASE2 | COMPLETED | The KHENERGY Study |
| NCT02976038 | PHASE2 | TERMINATED | Open-Label Extension Trial to Characterize the Long-term Safety and Tolerability of Elamipretide in Subjects With Genetically Confirmed Primary Mitochondrial Myopathy (PMM) |
| NCT03177798 | PHASE2 | COMPLETED | Mitochondria and Chronic Kidney Disease |
| NCT03866954 | PHASE2 | WITHDRAWN | Trial of Erythrocyte Encapsulated Thymidine Phosphorylase In Mitochondrial Neurogastrointestinal Encephalomyopathy |
| NCT04165239 | PHASE2 | COMPLETED | The KHENERGYZE Study |
| NCT04604548 | PHASE2 | COMPLETED | The KHENEREXT Study |
| NCT04802707 | PHASE2 | RECRUITING | Deoxynucleosides Pyrimidines as Treatment for Mitochondrial Depletion Syndrome |
| NCT04846036 | PHASE2 | SUSPENDED | The KHENERGYC Study |
| NCT05650229 | PHASE2 | RECRUITING | Efficacy of KL1333 in Adult Patients With Primary Mitochondrial Disease |
| NCT05972954 | PHASE2 | COMPLETED | OMT-28 in Patients With Primary Mitochondrial Disease (PMD) (PMD-OPTION) |
| NCT06017869 | PHASE2 | RECRUITING | Evaluate the Safety and Therapeutic Effects of a Single Intravenous Infusion (IV) of Autologous CD34+ Cells Enriched With Allogenic Placenta-derived Mitochondria in Patients With a Diagnosis of Pearson Syndrome (PS) |
| NCT07514338 | PHASE2 | NOT_YET_RECRUITING | Open Label Extension to Assess Long Term Safety and Efficacy of KL1333 in Patients With Primary Mitochondrial Disease |
| NCT02497690 | PHASE2 | COMPLETED | Effectiveness of Therapy Via Telemedicine Following Cochlear Implants |
| NCT03107871 | PHASE2 | ACTIVE_NOT_RECRUITING | Randomized Controlled Trial of Valganciclovir for Cytomegalovirus Infected Hearing Impaired Infants |
| NCT04120116 | PHASE2 | COMPLETED | FX-322 in Adults With Stable Sensorineural Hearing Loss |
| NCT05061758 | PHASE2 | WITHDRAWN | A Trial of LY3056480 in Patients With SNLH |
| NCT07364747 | PHASE2 | RECRUITING | Protective Effect of Acetylcysteine Against Cisplatinum-Induced Ototoxicity: A Randomized Controlled Trial |
| NCT02427178 | PHASE1 | WITHDRAWN | MNGIE Allogeneic Hematopoietic Stem Cell Transplant Safety Study |
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Related Atlas pages
- Associated diseases: mitochondrial DNA depletion syndrome 8a, progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 5, autosomal dominant progressive external ophthalmoplegia, mitochondrial neurogastrointestinal encephalomyopathy, adult-onset chronic progressive external ophthalmoplegia with mitochondrial myopathy, Kearns-Sayre syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): adult Fanconi syndrome, adult-onset chronic progressive external ophthalmoplegia with mitochondrial myopathy, autosomal dominant progressive external ophthalmoplegia, idiopathic camptocormia, Kearns-Sayre syndrome, mitochondrial disease, mitochondrial DNA depletion syndrome 8a, mitochondrial neurogastrointestinal encephalomyopathy, progressive external ophthalmoplegia, progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 5, rod-cone dystrophy, sensorineural deafness, and Fanconi-type renal dysfunction, sensorineural hearing loss disorder