RSPRY1
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Also known as KIAA1972
Summary
RSPRY1 (ring finger and SPRY domain containing 1, HGNC:29420) is a protein-coding gene on chromosome 16q13, encoding RING finger and SPRY domain-containing protein 1 (Q96DX4).
This gene encodes a glycoprotein that contains a RING-type zinc finger domain and an SPRY domain of unknown function. Alternative splicing of this gene results in multiple transcript variants.
Source: NCBI Gene 89970 — RefSeq curated summary.
At a glance
- Gene–disease (curated): progressive spondyloepimetaphyseal dysplasia-short stature-short fourth metatarsals-intellectual disability syndrome (Strong, GenCC)
- GWAS associations: 3
- Clinical variants (ClinVar): 211 total — 5 pathogenic, 1 likely-pathogenic
- Phenotypes (HPO): 82
- MANE Select transcript:
NM_133368
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:29420 |
| Approved symbol | RSPRY1 |
| Name | ring finger and SPRY domain containing 1 |
| Location | 16q13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA1972 |
| Ensembl gene | ENSG00000159579 |
| Ensembl biotype | protein_coding |
| OMIM | 616585 |
| Entrez | 89970 |
Gene structure
Transcript identifiers
Ensembl transcripts: 34 — 29 protein_coding, 4 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000394420, ENST00000537866, ENST00000561641, ENST00000562439, ENST00000562768, ENST00000562959, ENST00000563073, ENST00000564435, ENST00000564530, ENST00000566352, ENST00000568505, ENST00000568920, ENST00000860800, ENST00000860801, ENST00000860802, ENST00000860803, ENST00000860804, ENST00000860805, ENST00000860806, ENST00000860807, ENST00000860808, ENST00000860809, ENST00000935122, ENST00000935123, ENST00000935124, ENST00000935125, ENST00000935126, ENST00000935127, ENST00000970574, ENST00000970575, ENST00000970576, ENST00000970577, ENST00000970578, ENST00000970579
RefSeq mRNA: 4 — MANE Select: NM_133368
NM_001305163, NM_001305164, NM_001305182, NM_133368
CCDS: CCDS10775
Canonical transcript exons
ENST00000394420 — 15 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001046499 | 57220732 | 57220847 |
| ENSE00001046505 | 57216107 | 57216173 |
| ENSE00001518408 | 57186329 | 57186451 |
| ENSE00002583964 | 57238879 | 57240469 |
| ENSE00002708658 | 57204504 | 57205008 |
| ENSE00003468399 | 57209075 | 57209187 |
| ENSE00003499989 | 57221272 | 57221415 |
| ENSE00003508818 | 57231167 | 57231319 |
| ENSE00003516861 | 57208058 | 57208110 |
| ENSE00003598433 | 57216904 | 57217035 |
| ENSE00003612004 | 57235124 | 57235228 |
| ENSE00003626272 | 57230711 | 57230813 |
| ENSE00003631383 | 57212972 | 57213098 |
| ENSE00003634527 | 57227342 | 57227453 |
| ENSE00003653001 | 57213888 | 57213946 |
Expression profiles
Bgee: expression breadth ubiquitous, 256 present calls, max score 98.81.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 18.5106 / max 101.0023, expressed in 1812 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 154318 | 15.8794 | 1809 |
| 154319 | 2.4865 | 1384 |
| 154317 | 0.1447 | 38 |
Top tissues by expression
256 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| kidney epithelium | UBERON:0004819 | 98.81 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 97.06 | gold quality |
| secondary oocyte | CL:0000655 | 96.20 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 96.12 | gold quality |
| ileal mucosa | UBERON:0000331 | 96.01 | gold quality |
| oocyte | CL:0000023 | 94.98 | gold quality |
| sperm | CL:0000019 | 94.97 | gold quality |
| jejunal mucosa | UBERON:0000399 | 94.20 | gold quality |
| cardia of stomach | UBERON:0001162 | 94.16 | gold quality |
| upper arm skin | UBERON:0004263 | 93.87 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 93.85 | gold quality |
| ganglionic eminence | UBERON:0004023 | 93.79 | gold quality |
| nipple | UBERON:0002030 | 92.78 | gold quality |
| ventricular zone | UBERON:0003053 | 92.78 | gold quality |
| myocardium | UBERON:0002349 | 92.67 | silver quality |
| tibialis anterior | UBERON:0001385 | 92.64 | gold quality |
| cortical plate | UBERON:0005343 | 92.50 | gold quality |
| adrenal tissue | UBERON:0018303 | 92.45 | gold quality |
| epithelium of mammary gland | UBERON:0003244 | 92.33 | gold quality |
| mammary duct | UBERON:0001765 | 92.28 | gold quality |
| colonic mucosa | UBERON:0000317 | 92.26 | gold quality |
| bronchial epithelial cell | CL:0002328 | 92.14 | gold quality |
| vena cava | UBERON:0004087 | 92.13 | silver quality |
| bronchus | UBERON:0002185 | 92.08 | gold quality |
| cartilage tissue | UBERON:0002418 | 92.05 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 92.01 | silver quality |
| lower lobe of lung | UBERON:0008949 | 91.99 | gold quality |
| mammalian vulva | UBERON:0000997 | 91.79 | gold quality |
| endometrium | UBERON:0001295 | 91.79 | gold quality |
| oviduct epithelium | UBERON:0004804 | 91.78 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 7.46 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
114 targeting RSPRY1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-5193 | 100.00 | 67.26 | 1744 |
| HSA-MIR-6759-5P | 99.99 | 66.54 | 785 |
| HSA-MIR-33A-5P | 99.99 | 68.62 | 1055 |
| HSA-MIR-33B-5P | 99.99 | 68.58 | 1062 |
| HSA-MIR-548AN | 99.97 | 70.91 | 2817 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-548J-3P | 99.94 | 72.61 | 4881 |
| HSA-MIR-548AE-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-548AH-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AM-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AQ-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-1297 | 99.91 | 73.41 | 3162 |
| HSA-MIR-1305 | 99.91 | 71.43 | 3443 |
| HSA-MIR-3686 | 99.90 | 70.53 | 2432 |
| HSA-MIR-6783-3P | 99.89 | 67.92 | 2059 |
| HSA-MIR-1343-3P | 99.89 | 66.78 | 1815 |
| HSA-MIR-548D-3P | 99.87 | 70.67 | 4362 |
| HSA-MIR-548BB-3P | 99.86 | 70.58 | 4354 |
| HSA-MIR-548AC | 99.84 | 70.77 | 4351 |
| HSA-MIR-548H-3P | 99.84 | 70.80 | 4349 |
| HSA-MIR-548Z | 99.84 | 70.80 | 4349 |
Literature-anchored findings (GeneRIF, showing 3)
- RSPRY1 Mutations are associated with Progressive Skeletal Dysplasia. (PMID:26365341)
- we provide further evidence that Spondyloepimetaphyseal dysplasia Faden-Alkuraya type is a RSPRY1-associated skeletal dysplasia with a distinctive phenotype composed of spondyloepimetaphyseal dysplasia, cono-brachydactyly, and craniosynostosis along with recognizable facial features and intellectual disability. (PMID:30063090)
- Two sisters with RSPRY1-related spondyloepimetaphyseal dysplasia. (PMID:38562122)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | rspry1 | ENSDARG00000062558 |
| mus_musculus | Rspry1 | ENSMUSG00000050079 |
| rattus_norvegicus | Rspry1 | ENSRNOG00000060931 |
| caenorhabditis_elegans | F16A11.1 | WBGENE00008876 |
Paralogs (1): RNF123 (ENSG00000164068)
Protein
Protein identifiers
RING finger and SPRY domain-containing protein 1 — Q96DX4 (reviewed: Q96DX4)
All UniProt accessions (5): Q96DX4, H3BPL2, H3BQG6, H3BQQ7, H3BSC7
UniProt curated annotations — full annotation on UniProt →
Subcellular location. Secreted.
Disease relevance. Spondyloepimetaphyseal dysplasia, Faden-Alkuraya type (SEMDFA) [MIM:616723] An autosomal recessive skeletal disorder characterized by spondyloepimetaphyseal dysplasia, short stature, facial dysmorphism, short fourth metatarsals, and intellectual disability. The disease is caused by variants affecting the gene represented in this entry.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q96DX4-1 | 1 | yes |
| Q96DX4-2 | 2 |
RefSeq proteins (3): NP_001292092, NP_001292093, NP_588609* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001841 | Znf_RING | Domain |
| IPR001870 | B30.2/SPRY | Domain |
| IPR003877 | SPRY_dom | Domain |
| IPR013083 | Znf_RING/FYVE/PHD | Homologous_superfamily |
| IPR013320 | ConA-like_dom_sf | Homologous_superfamily |
| IPR016024 | ARM-type_fold | Homologous_superfamily |
| IPR035774 | SPRY_RSPRY1 | Domain |
| IPR043136 | B30.2/SPRY_sf | Homologous_superfamily |
| IPR045129 | RNF123/RKP/RSPRY1 | Family |
Pfam: PF00622, PF13920
UniProt features (12 total): splice variant 2, compositionally biased region 2, signal peptide 1, chain 1, sequence variant 1, domain 1, zinc finger region 1, region of interest 1, modified residue 1, glycosylation site 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96DX4-F1 | 84.78 | 0.74 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 50
Glycosylation sites (1): 314
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 340 (showing top):
RNGTGGGC_UNKNOWN, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, COUP_01, MILI_PSEUDOPODIA_HAPTOTAXIS_UP, USF_01, TGIF_01, ZIC1_01, GGGNNTTTCC_NFKB_Q6_01, HNF4_01, AACTTT_UNKNOWN, USF_02, MARTINEZ_RESPONSE_TO_TRABECTEDIN_DN, EGR1_01, GOBP_PROTEIN_CATABOLIC_PROCESS, TGGAAA_NFAT_Q4_01
GO Biological Process (1): obsolete proteolysis involved in protein catabolic process (GO:0051603)
GO Molecular Function (4): ubiquitin-protein transferase activity (GO:0004842), zinc ion binding (GO:0008270), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (2): extracellular region (GO:0005576), cytoplasm (GO:0005737)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| ubiquitin-like protein transferase activity | 1 |
| transition metal ion binding | 1 |
| binding | 1 |
| cation binding | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
756 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RSPRY1 | CCDC106 | Q9BWC9 | 595 |
| RSPRY1 | EAF1 | Q96JC9 | 593 |
| RSPRY1 | CLXN | Q9HAE3 | 576 |
| RSPRY1 | GPATCH3 | Q96I76 | 570 |
| RSPRY1 | PRR23C | Q6ZRP0 | 567 |
| RSPRY1 | FIZ1 | Q96SL8 | 562 |
| RSPRY1 | ZC3H15 | Q8WU90 | 557 |
| RSPRY1 | NUDT13 | Q86X67 | 557 |
| RSPRY1 | ZNRF2 | Q8NHG8 | 533 |
| RSPRY1 | MRPS34 | P82930 | 528 |
| RSPRY1 | TPRA1 | Q86W33 | 528 |
| RSPRY1 | METTL6 | Q8TCB7 | 525 |
| RSPRY1 | SNX20 | Q7Z614 | 499 |
| RSPRY1 | NELFB | Q8WX92 | 492 |
| RSPRY1 | FBXO9 | Q9UK97 | 490 |
IntAct
96 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| VIM | NEFL | psi-mi:“MI:0914”(association) | 0.840 |
| UNC119 | UNC119B | psi-mi:“MI:0914”(association) | 0.640 |
| HEY2 | ARL10 | psi-mi:“MI:0914”(association) | 0.640 |
| LYPD3 | SCAMP1 | psi-mi:“MI:0914”(association) | 0.640 |
| VDAC1 | HK1 | psi-mi:“MI:0914”(association) | 0.560 |
| SLC15A1 | METTL15 | psi-mi:“MI:0914”(association) | 0.530 |
| GCNT3 | BCKDK | psi-mi:“MI:0914”(association) | 0.530 |
| CDK5R1 | DENR | psi-mi:“MI:0914”(association) | 0.530 |
| ITM2A | NDUFB5 | psi-mi:“MI:0914”(association) | 0.530 |
| SPINK2 | STRN | psi-mi:“MI:0914”(association) | 0.530 |
| WNT7A | LDLR | psi-mi:“MI:0914”(association) | 0.530 |
| RSPRY1 | NEFL | psi-mi:“MI:0914”(association) | 0.530 |
| SPATA19 | MTHFR | psi-mi:“MI:0914”(association) | 0.530 |
| FBL | ZNF316 | psi-mi:“MI:0914”(association) | 0.530 |
| CLEC3A | ZZEF1 | psi-mi:“MI:0914”(association) | 0.530 |
| CCNJL | HSPA5 | psi-mi:“MI:0914”(association) | 0.530 |
| XAGE3 | WIZ | psi-mi:“MI:0914”(association) | 0.530 |
| IL1R2 | EXOC5 | psi-mi:“MI:0914”(association) | 0.530 |
BioGRID (124): RSPRY1 (Affinity Capture-MS), RSPRY1 (Affinity Capture-MS), RSPRY1 (Affinity Capture-MS), RSPRY1 (Affinity Capture-MS), RSPRY1 (Affinity Capture-MS), RSPRY1 (Affinity Capture-MS), RSPRY1 (Affinity Capture-MS), RSPRY1 (Synthetic Lethality), INF2 (Affinity Capture-MS), C5orf30 (Affinity Capture-MS), NES (Affinity Capture-MS), INA (Affinity Capture-MS), RSPRY1 (Affinity Capture-MS), RSPRY1 (Affinity Capture-MS), RSPRY1 (Affinity Capture-MS)
ESM2 similar proteins: A1L0Y2, A2ALK8, A2ARP1, A2Z8S0, A4IFG2, A8XT88, B1AVZ0, B3M1E1, B3P4N5, B4GZ20, B4HJC0, B4KA23, B4LVS8, B4NKI9, B4PVH6, B4QVW6, M9MRI4, O35242, O76050, P0C644, P26045, Q18223, Q29B63, Q29RQ5, Q3MHZ2, Q3UJK4, Q571F5, Q5M870, Q5NCX5, Q5PQR3, Q5R881, Q6PFW1, Q6PJ21, Q75G68, Q8BVR6, Q8C726, Q8CJC5, Q8R516, Q91YL3, Q91ZY8
Diamond homologs: A0A5F9C6I2, A1L252, A2VD92, B0LPN4, D3ZXK7, E9PZQ0, E9Q401, F1LMY4, O94712, P11716, P16960, P21817, P30957, P69566, Q15413, Q19614, Q1LUS8, Q28FM1, Q5R881, Q5XH91, Q5XPI3, Q5XPI4, Q6VN19, Q8BVR6, Q90WU3, Q92736, Q95LP3, Q96DX4, Q96S59, Q9PTY5, Q9VNV3, A1E2V0, A1L020, A1L3F4, A5D8Q0, A9JTP3, A9ULZ2, D3ZDI6, E3SCZ8, O08863
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| Ub:E2 | “up-regulates activity” | RSPRY1 | ubiquitination |
Disease & clinical
Clinical variants and AI predictions
ClinVar
211 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 5 |
| Likely pathogenic | 1 |
| Uncertain significance | 67 |
| Likely benign | 109 |
| Benign | 19 |
Top pathogenic / likely-pathogenic (6)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1029071 | NM_133368.3(RSPRY1):c.1422T>A (p.Cys474Ter) | Pathogenic |
| 1706547 | NM_133368.3(RSPRY1):c.358G>T (p.Glu120Ter) | Pathogenic |
| 218885 | NM_133368.3(RSPRY1):c.1279dup (p.Thr427fs) | Pathogenic |
| 218886 | NM_133368.3(RSPRY1):c.121G>T (p.Gly41Cys) | Pathogenic |
| 2427211 | NC_000016.9:g.(?57242967)(57243119_?)del | Pathogenic |
| 3391106 | NM_133368.3(RSPRY1):c.901_901+15del | Likely pathogenic |
SpliceAI
2429 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 16:57207551:A:AG | acceptor_gain | 1.0000 |
| 16:57209073:A:AG | acceptor_gain | 1.0000 |
| 16:57209074:G:GG | acceptor_gain | 1.0000 |
| 16:57209188:G:GG | donor_gain | 1.0000 |
| 16:57212966:TTTTA:T | acceptor_loss | 1.0000 |
| 16:57212967:TTTA:T | acceptor_loss | 1.0000 |
| 16:57212968:TTA:T | acceptor_loss | 1.0000 |
| 16:57212969:TAG:T | acceptor_loss | 1.0000 |
| 16:57212970:A:AG | acceptor_gain | 1.0000 |
| 16:57212970:A:T | acceptor_loss | 1.0000 |
| 16:57212970:AG:A | acceptor_gain | 1.0000 |
| 16:57212971:G:A | acceptor_loss | 1.0000 |
| 16:57212971:G:GG | acceptor_gain | 1.0000 |
| 16:57212971:GG:G | acceptor_gain | 1.0000 |
| 16:57212971:GGAT:G | acceptor_gain | 1.0000 |
| 16:57213094:AGCAG:A | donor_loss | 1.0000 |
| 16:57213096:CAGG:C | donor_loss | 1.0000 |
| 16:57213097:AG:A | donor_loss | 1.0000 |
| 16:57213098:GGT:G | donor_loss | 1.0000 |
| 16:57213099:G:GC | donor_loss | 1.0000 |
| 16:57213100:T:A | donor_loss | 1.0000 |
| 16:57214161:C:G | donor_gain | 1.0000 |
| 16:57216169:GACAA:G | donor_gain | 1.0000 |
| 16:57216174:G:GG | donor_gain | 1.0000 |
| 16:57216995:TC:T | donor_gain | 1.0000 |
| 16:57217036:G:GG | donor_gain | 1.0000 |
| 16:57220730:A:AG | acceptor_gain | 1.0000 |
| 16:57220731:G:GA | acceptor_gain | 1.0000 |
| 16:57220847:GGTA:G | donor_loss | 1.0000 |
| 16:57220849:T:G | donor_loss | 1.0000 |
AlphaMissense
3797 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 16:57204981:T:C | L108P | 1.000 |
| 16:57204990:T:A | I111K | 1.000 |
| 16:57204999:T:C | L114P | 1.000 |
| 16:57208090:T:C | L128S | 1.000 |
| 16:57208101:G:C | A132P | 1.000 |
| 16:57209083:T:A | W138R | 1.000 |
| 16:57209083:T:C | W138R | 1.000 |
| 16:57209085:G:C | W138C | 1.000 |
| 16:57209085:G:T | W138C | 1.000 |
| 16:57209096:T:A | V142D | 1.000 |
| 16:57209137:G:A | G156R | 1.000 |
| 16:57209137:G:C | G156R | 1.000 |
| 16:57209138:G:A | G156E | 1.000 |
| 16:57209144:C:A | A158D | 1.000 |
| 16:57209147:T:A | V159D | 1.000 |
| 16:57209156:T:C | L162S | 1.000 |
| 16:57209162:T:C | L164P | 1.000 |
| 16:57209170:T:C | C167R | 1.000 |
| 16:57209179:C:T | P170S | 1.000 |
| 16:57209180:C:A | P170H | 1.000 |
| 16:57213058:C:A | N201K | 1.000 |
| 16:57213058:C:G | N201K | 1.000 |
| 16:57213069:T:A | V205D | 1.000 |
| 16:57213084:C:A | A210D | 1.000 |
| 16:57213093:T:C | L213P | 1.000 |
| 16:57213098:G:C | G215R | 1.000 |
| 16:57213888:G:A | G215D | 1.000 |
| 16:57217017:T:A | W295R | 1.000 |
| 16:57217017:T:C | W295R | 1.000 |
| 16:57220822:T:C | L331P | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000131739 (16:57226920 A>G), RS1000159032 (16:57219935 T>C), RS1000256645 (16:57186918 C>G,T), RS1000406513 (16:57212931 G>A), RS1000628241 (16:57198509 T>C), RS1000637311 (16:57192152 G>A), RS1000731564 (16:57189540 C>A), RS1000772954 (16:57192463 A>C,G), RS1000887990 (16:57186140 C>T), RS1000936795 (16:57198222 A>G), RS1001137482 (16:57200965 A>C,G,T), RS1001189925 (16:57204511 A>G,T), RS1001304932 (16:57202680 C>T), RS1001320634 (16:57195104 T>C), RS1001382815 (16:57186273 A>C)
Disease associations
OMIM: gene MIM:616585 | disease phenotypes: MIM:616723
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| progressive spondyloepimetaphyseal dysplasia-short stature-short fourth metatarsals-intellectual disability syndrome | Strong | Autosomal recessive |
Mondo (1): progressive spondyloepimetaphyseal dysplasia-short stature-short fourth metatarsals-intellectual disability syndrome (MONDO:0014748)
Orphanet (1): Progressive spondyloepimetaphyseal dysplasia-short stature-short fourth metatarsals-intellectual disability syndrome (Orphanet:457395)
HPO phenotypes
82 total (30 of 82 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000164 | Abnormality of the dentition |
| HP:0000252 | Microcephaly |
| HP:0000272 | Malar flattening |
| HP:0000286 | Epicanthus |
| HP:0000316 | Hypertelorism |
| HP:0000369 | Low-set ears |
| HP:0000470 | Short neck |
| HP:0000486 | Strabismus |
| HP:0000508 | Ptosis |
| HP:0000520 | Proptosis |
| HP:0000598 | Abnormality of the ear |
| HP:0000729 | Autistic behavior |
| HP:0000750 | Delayed speech and language development |
| HP:0000766 | Abnormal sternum morphology |
| HP:0000926 | Platyspondyly |
| HP:0000938 | Osteopenia |
| HP:0001156 | Brachydactyly |
| HP:0001249 | Intellectual disability |
| HP:0001256 | Mild intellectual disability |
| HP:0001270 | Motor delay |
| HP:0001288 | Gait disturbance |
| HP:0001290 | Generalized hypotonia |
| HP:0001363 | Craniosynostosis |
| HP:0001377 | Limited elbow extension |
| HP:0001498 | Carpal bone hypoplasia |
| HP:0001643 | Patent ductus arteriosus |
| HP:0001653 | Mitral regurgitation |
| HP:0001655 | Patent foramen ovale |
| HP:0001761 | Pes cavus |
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004029_37 | Angiotensin-converting enzyme inhibitor intolerance | 1.000000e-06 |
| GCST008159_47 | Waist-to-hip ratio adjusted for BMI | 2.000000e-06 |
| GCST010396_159 | Gut microbiota (bacterial taxa, hurdle binary method) | 2.000000e-06 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005325 | response to angiotensin-converting enzyme inhibitor |
| EFO:0007788 | BMI-adjusted waist-hip ratio |
| EFO:0007874 | gut microbiome measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
18 total (human), top 18 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | increases abundance, increases expression | 2 |
| beta-lapachone | decreases expression | 1 |
| manganese chloride | increases abundance, increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| abrine | increases expression | 1 |
| Resveratrol | increases expression, affects cotreatment | 1 |
| Arsenic | increases abundance, increases expression | 1 |
| Atrazine | increases expression | 1 |
| Benzene | increases expression | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Clozapine | affects cotreatment, increases expression | 1 |
| Cuprizone | affects cotreatment, increases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Lead | affects splicing | 1 |
| Manganese | increases abundance, increases expression | 1 |
| Plant Extracts | affects cotreatment, increases expression | 1 |
| Valproic Acid | decreases methylation | 1 |
| Vanadates | increases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Associated diseases: progressive spondyloepimetaphyseal dysplasia-short stature-short fourth metatarsals-intellectual disability syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): progressive spondyloepimetaphyseal dysplasia-short stature-short fourth metatarsals-intellectual disability syndrome