RTEL1
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Also known as bK3184A7.3NHLDKFZP434C013KIAA1088RTEL
Summary
RTEL1 (regulator of telomere elongation helicase 1, HGNC:15888) is a protein-coding gene on chromosome 20q13.33, encoding Regulator of telomere elongation helicase 1 (Q9NZ71). A probable ATP-dependent DNA helicase implicated in telomere-length regulation, DNA repair and the maintenance of genomic stability. It is a selective cancer dependency (DepMap: 62.7% of cell lines).
This gene encodes a DNA helicase which functions in the stability, protection and elongation of telomeres and interacts with proteins in the shelterin complex known to protect telomeres during DNA replication. Mutations in this gene have been associated with dyskeratosis congenita and Hoyerall-Hreidarsson syndrome. Read-through transcription of this gene into the neighboring downstream gene, which encodes tumor necrosis factor receptor superfamily, member 6b, generates a non-coding transcript. Alternative splicing results in multiple transcript variants encoding different isoforms.
Source: NCBI Gene 51750 — RefSeq curated summary.
At a glance
- Gene–disease (curated): pulmonary fibrosis and/or bone marrow failure, Telomere-related, 3 (Definitive, ClinGen) — +4 more curated relationships
- GWAS associations: 54
- Clinical variants (ClinVar): 4,264 total — 102 pathogenic, 124 likely-pathogenic
- Phenotypes (HPO): 109
- Cancer dependency (DepMap): dependent in 62.7% of screened cell lines
- MANE Select transcript:
NM_001283009
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:15888 |
| Approved symbol | RTEL1 |
| Name | regulator of telomere elongation helicase 1 |
| Location | 20q13.33 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | bK3184A7.3, NHL, DKFZP434C013, KIAA1088, RTEL |
| Ensembl gene | ENSG00000258366 |
| Ensembl biotype | protein_coding |
| OMIM | 608833 |
| Entrez | 51750 |
Gene structure
Transcript identifiers
Ensembl transcripts: 36 — 21 protein_coding, 6 nonsense_mediated_decay, 5 retained_intron, 4 protein_coding_CDS_not_defined
ENST00000318100, ENST00000356810, ENST00000360203, ENST00000370003, ENST00000370018, ENST00000425905, ENST00000463361, ENST00000469728, ENST00000482936, ENST00000488316, ENST00000496816, ENST00000508582, ENST00000645309, ENST00000646389, ENST00000647249, ENST00000684971, ENST00000686756, ENST00000687123, ENST00000692658, ENST00000692911, ENST00000697814, ENST00000897316, ENST00000897317, ENST00000935985, ENST00000935986, ENST00000935987, ENST00000935988, ENST00000935989, ENST00000935990, ENST00000935991, ENST00000935992, ENST00000935993, ENST00000962500, ENST00000962501, ENST00000962502, ENST00000962503
RefSeq mRNA: 4 — MANE Select: NM_001283009
NM_001283009, NM_001283010, NM_016434, NM_032957
CCDS: CCDS13530, CCDS13531, CCDS63331, CCDS74751
Canonical transcript exons
ENST00000360203 — 35 exons
| Exon | Start | End |
|---|---|---|
| ENSE00003471346 | 63689750 | 63689865 |
| ENSE00003502945 | 63685523 | 63685597 |
| ENSE00003503888 | 63661850 | 63661943 |
| ENSE00003508308 | 63694372 | 63694488 |
| ENSE00003512723 | 63687937 | 63688050 |
| ENSE00003544973 | 63690805 | 63690947 |
| ENSE00003547987 | 63688139 | 63688179 |
| ENSE00003550427 | 63689502 | 63689648 |
| ENSE00003577544 | 63667469 | 63667553 |
| ENSE00003584704 | 63685791 | 63685872 |
| ENSE00003591509 | 63694741 | 63694974 |
| ENSE00003591944 | 63662546 | 63662627 |
| ENSE00003598309 | 63695066 | 63695221 |
| ENSE00003599103 | 63679849 | 63679946 |
| ENSE00003605076 | 63659233 | 63659504 |
| ENSE00003607070 | 63689055 | 63689132 |
| ENSE00003608421 | 63693143 | 63693283 |
| ENSE00003610049 | 63666004 | 63666079 |
| ENSE00003619664 | 63688301 | 63688386 |
| ENSE00003624499 | 63695328 | 63695650 |
| ENSE00003631309 | 63690294 | 63690441 |
| ENSE00003644165 | 63688528 | 63688605 |
| ENSE00003645336 | 63662829 | 63662889 |
| ENSE00003651800 | 63661298 | 63661496 |
| ENSE00003662324 | 63687638 | 63687770 |
| ENSE00003662529 | 63691742 | 63691837 |
| ENSE00003666143 | 63673940 | 63674093 |
| ENSE00003673304 | 63672556 | 63672621 |
| ENSE00003683158 | 63695778 | 63696245 |
| ENSE00003683698 | 63680664 | 63680719 |
| ENSE00003689639 | 63692805 | 63693003 |
| ENSE00003816037 | 63678145 | 63678183 |
| ENSE00003826298 | 63690087 | 63690210 |
| ENSE00003829195 | 63678268 | 63678346 |
| ENSE00003898540 | 63658312 | 63658466 |
Expression profiles
Bgee: expression breadth ubiquitous, 134 present calls, max score 95.76.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 14.9017 / max 203.1126, expressed in 1797 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 185844 | 14.9017 | 1797 |
Top tissues by expression
134 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| sural nerve | UBERON:0015488 | 95.76 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 94.73 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 94.13 | gold quality |
| cerebellar cortex | UBERON:0002129 | 94.05 | gold quality |
| cerebellum | UBERON:0002037 | 94.03 | gold quality |
| pituitary gland | UBERON:0000007 | 93.36 | gold quality |
| mucosa of stomach | UBERON:0001199 | 92.62 | gold quality |
| adenohypophysis | UBERON:0002196 | 92.11 | gold quality |
| body of uterus | UBERON:0009853 | 91.02 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 90.70 | gold quality |
| thoracic aorta | UBERON:0001515 | 90.03 | gold quality |
| ascending aorta | UBERON:0001496 | 89.97 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 89.75 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 89.56 | gold quality |
| tibial artery | UBERON:0007610 | 89.29 | gold quality |
| popliteal artery | UBERON:0002250 | 89.28 | gold quality |
| apex of heart | UBERON:0002098 | 89.01 | gold quality |
| left coronary artery | UBERON:0001626 | 89.00 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 88.90 | gold quality |
| right frontal lobe | UBERON:0002810 | 88.87 | gold quality |
| metanephros cortex | UBERON:0010533 | 88.79 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 88.76 | gold quality |
| thyroid gland | UBERON:0002046 | 88.65 | gold quality |
| endocervix | UBERON:0000458 | 88.62 | gold quality |
| myometrium | UBERON:0001296 | 88.13 | gold quality |
| left uterine tube | UBERON:0001303 | 87.98 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 87.96 | gold quality |
| lower esophagus | UBERON:0013473 | 87.93 | gold quality |
| ectocervix | UBERON:0012249 | 87.91 | gold quality |
| uterine cervix | UBERON:0000002 | 87.66 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 1.96 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
7 targeting RTEL1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4283 | 100.00 | 66.42 | 2097 |
| HSA-MIR-516A-3P | 99.46 | 67.96 | 1378 |
| HSA-MIR-516B-3P | 99.46 | 67.96 | 1378 |
| HSA-MIR-7162-5P | 99.46 | 68.08 | 1368 |
| HSA-MIR-4254 | 99.11 | 65.15 | 1315 |
| HSA-MIR-423-5P | 98.69 | 67.48 | 1522 |
| HSA-MIR-3184-5P | 98.56 | 67.13 | 1491 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 62.7% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 40)
- Study finds that rtel-1 mutant worms and RTEL1-depleted human cells share characteristic phenotypes with yeast srs2 mutants: lethality upon deletion of the sgs1/BLM homolog, hyperrecombination, and DNA damage sensitivity.[RTEL1] (PMID:18957201)
- On 9p21, rs1412829 near CDKN2B had discovery P = 3.4 x 10(-8), replication P = 0.0038 and combined P = 1.85 x 10(-10). On 20q13.3, rs6010620 intronic to RTEL1 had discovery P = 1.5 x 10(-7), replication P = 0.00035 and combined P = 3.40 x 10(-9). (PMID:19578366)
- Polymorphisms in the LIG4, BTBD2, HMGA2, and RTEL1 genes, which are involved in the double-strand break repair pathway, are associated with glioblastoma multiforme survival. (PMID:20368557)
- SUSCEPTIBILITY LOCI FOR GLIOMA AND GLIOBLASTOMA RISK IN A CHINESE POPULATION INCLUDED RTEL1 (PMID:21350045)
- rs6010620 a genetic variant of RTEL1, was one of 3 genetic variants implicated in a pool of US epidemiologic studies of glioma risk (PMID:21920947)
- rs6010620 (RTEL1) was associated with an increased risk of glioma when restricting to cases with family history of brain tumours. (PMID:23115063)
- The nonsense mutations both cause truncation of the RTEL1 protein, resulting in loss of the PIP box; this may abrogate an important protein-protein interaction. These findings implicate a new telomere biology gene, RTEL1, in the etiology of DC. (PMID:23329068)
- These biallelic RTEL1 mutations are responsible for a major subgroup ( approximately 29%) of HHS. (PMID:23453664)
- results identify RTEL1 as a novel Hoyeraal-Hreidarsson syndrome-causing gene and highlight its role as a genomic caretaker in humans. (PMID:23591994)
- Two significant Ten candidate tagging SNPs in RTEL1 gene were observed to be associated with glioma risk (PMID:23683922)
- Results indicate the potential roles of regulator of telomere elongation helicase 1 (RTEL1) and telomerase reverse transcriptase (TERT) in astrocytoma development. (PMID:23812731)
- Data show that RTEL1 interacts with the shelterin protein TRF1, indicating a potential recruitment mechanism of RTEL1 to telomeres. (PMID:23959892)
- The molecular data and the patterns of inheritance are consistent with a hypomorphic mutation in RTEL1 as the underlying basis of the clinical and cellular phenotypes. (PMID:24009516)
- The C-terminal extension of RTEL1, downstream of its catalytic domain and including several HHS-associated mutations, contains a yet unidentified tandem of harmonin-N-like domains. (PMID:24130156)
- suggested that RTEL1 rs6010620 polymorphism is likely to be associated with increased glioma risk, which lends further biological plausibility to these findings (PMID:24523019)
- Authors propose that RTEL1 serves as a human analog of Srs2 to inhibit (CTGCAG) repeat expansions and fragility, likely by unwinding problematic hairpins. (PMID:24561255)
- rs6010620 polymorphism in the RTEL1 gene is associated with increased risk of glioma in both Caucasians and Asians. [Meta-Analysis] (PMID:25227808)
- Association between the RTEL1 rs6010620 polymorphism and glioma risk was significant. [Meta-Analysis] (PMID:25556444)
- Rare loss-of-function variants in RTEL1 represent a newly defined genetic predisposition for FIP, supporting the importance of telomere-related pathways in pulmonary fibrosis. (PMID:25607374)
- The shelterin protein TRF2 recruits RTEL1 to telomeres in S phase, which is required to prevent catastrophic t-loop processing by structure-specific nucleases. (PMID:25620558)
- This work unravels completely unanticipated roles for RTEL1 in RNP trafficking and strongly suggests that defects in RNP biogenesis pathways contribute to the pathology of Hoyeraal-Hreidarsson syndrome (PMID:25628358)
- PARN and RTEL1 mutation carriers had shortened leukocyte telomere lengths. (PMID:25848748)
- RTEL1 single nucleotide polymorphisms are associated with decreased susceptibility to pediatric brain astrocytoma. (PMID:26014354)
- Heterozygous RTEL1 mutations are responsible for familial pulmonary fibrosis (FPF) and, thereby, extend the clinical spectrum of RTEL1 deficiency. Thus, RTEL1 enlarges the number of telomere-associated genes implicated in FPF. (PMID:26022962)
- A homozygous mutation of RTEL1 in a child presenting with an apparently isolated natural killer cell deficiency. (PMID:26025130)
- results suggest a significant association between the RETL1, TREH, and PHLDB1 genes and GBM development in the Han Chinese population (PMID:26156397)
- Telomere length is associated with Esophageal squamous cell carcinoma risk in a U-shaped pattern and demonstrates that TL-SNPs may not be important in carcinogenesis in Chinese population. (PMID:26581417)
- Deletion in the RTEL1 gene is associated with metastatic glioblastoma. (PMID:26803811)
- Genetic risk variants in the RTEL1 gene is associated with somatic biomarkers in glioma. (PMID:26839018)
- This meta-analysis demonstrates that the RTEL1 rs2297440 polymorphism plays a moderate, but significant role in the risk of glioma. (PMID:26939676)
- promoter methylated in 51.4% of lung cancer patients and in 8.8% of healthy individuals (PMID:27485611)
- Pulmonary fibrosis patients with mutations in telomerase reverse transcriptase, telomerase RNA component, regulator of telomere elongation helicase 1 and poly(A)-specific ribonuclease were identified and clinical data were analysed. Genetic mutations in telomere related genes lead to a variety of interstitial lung disease diagnoses that are universally progressive. (PMID:27540018)
- Findings suggest a potential association between regulator of telomere elongation helicase 1 (RTEL1) polymorphisms and lung cancer (LC) risk in a Chinese Han population. (PMID:27765928)
- SNPs in the RTEL1 are associated with COPD in a Chinese Han population. It is possible that these variants are COPD risk factors. (PMID:28360516)
- Observation are firstly, heterozygous LOF RTEL1 variants are associated with myelodysplasia and liver disease in adulthood. Secondly, biallelic RTEL1 variants can present with just bone marrow failure in adulthood. Thirdly, many heterozygous variants, and even some biallelic RTEL1 variants, are bystanders. (PMID:28495916)
- The allele “G” of rs6089953 and rs6010621 and the allele “A” of rs2297441 were associated with decreased risk of High altitude pulmonary edema, haplotype “GG, GT, AT” of rs6089953-rs6010621 were detected significantly associated with High altitude pulmonary edema risk in the Chinese population. (PMID:28953687)
- a novel association signal in the RTEL1 gene (intronic single nucleotide poly morphism (SNP) rs2297439; P=2.82x10(-7)) that is independent of previously reported Telomere-associated SNPs in this region. (PMID:29151059)
- heterozygous RTEL1 variants were associated with marrow failure, and telomere length measurement alone may not identify patients with telomere dysfunction carrying RTEL1 variants. (PMID:29344583)
- hRTEL1 contributes to the maintenance of long telomeres by preserving long G-overhangs, thereby facilitating POT1 binding and elongation by telomerase. (PMID:29522136)
- RTEL1 SNPs were associated with relative telomere length. Shorter relative telomere length was associated with an increased risk of stroke. (PMID:30345460)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | rtel1 | ENSDARG00000035074 |
| mus_musculus | Rtel1 | ENSMUSG00000038685 |
| rattus_norvegicus | Rtel1 | ENSRNOG00000027513 |
| drosophila_melanogaster | Rtel1 | FBGN0029798 |
| caenorhabditis_elegans | rtel-1 | WBGENE00009124 |
Paralogs (3): DDX11 (ENSG00000013573), ERCC2 (ENSG00000104884), BRIP1 (ENSG00000136492)
Protein
Protein identifiers
Regulator of telomere elongation helicase 1 — Q9NZ71 (reviewed: Q9NZ71)
Alternative names: Novel helicase-like
All UniProt accessions (7): Q9NZ71, A0A0C4DGC7, A0A2R8Y7H5, A0A2R8YD56, A0A8V8TLB5, A0A8V8TLQ6, X6R5I7
UniProt curated annotations — full annotation on UniProt →
Function. A probable ATP-dependent DNA helicase implicated in telomere-length regulation, DNA repair and the maintenance of genomic stability. Acts as an anti-recombinase to counteract toxic recombination and limit crossover during meiosis. Regulates meiotic recombination and crossover homeostasis by physically dissociating strand invasion events and thereby promotes noncrossover repair by meiotic synthesis dependent strand annealing (SDSA) as well as disassembly of D loop recombination intermediates. Also disassembles T loops and prevents telomere fragility by counteracting telomeric G4-DNA structures, which together ensure the dynamics and stability of the telomere.
Subunit / interactions. Interacts with TERF1. Interacts (via PIP-box) with PCNA; the interaction is direct and essential for suppressing telomere fragility. Interacts with MMS19; the interaction mediates the association of RTEL1 with the cytosolic iron-sulfur protein assembly (CIA) complex.
Subcellular location. Nucleus.
Disease relevance. Dyskeratosis congenita, autosomal recessive, 5 (DKCB5) [MIM:615190] A form of dyskeratosis congenita, a rare multisystem disorder caused by defective telomere maintenance. It is characterized by progressive bone marrow failure, and the clinical triad of reticulated skin hyperpigmentation, nail dystrophy, and mucosal leukoplakia. Common but variable features include premature graying, aplastic anemia, low platelets, osteoporosis, pulmonary fibrosis, and liver fibrosis among others. Early mortality is often associated with bone marrow failure, infections, fatal pulmonary complications, or malignancy. DKCB5 is characterized by onset of bone marrow failure and immunodeficiency in early childhood. Most patients also have growth and developmental delay and cerebellar hypoplasia, consistent with a clinical diagnosis of Hoyeraal-Hreidarsson syndrome. The disease is caused by variants affecting the gene represented in this entry. RTEL1 mutations have also been found in patients with a dyskeratosis congenita-like phenotype consisting of one feature of dyskeratosis congenita and short telomeres, in the absence of the typical DKC diagnostic triad. Dyskeratosis congenita, autosomal dominant, 4 (DKCA4) [MIM:615190] A rare multisystem disorder caused by defective telomere maintenance. It is characterized by progressive bone marrow failure, and the clinical triad of reticulated skin hyperpigmentation, nail dystrophy, and mucosal leukoplakia. Common but variable features include premature graying, aplastic anemia, low platelets, osteoporosis, pulmonary fibrosis, and liver fibrosis among others. Early mortality is often associated with bone marrow failure, infections, fatal pulmonary complications, or malignancy. The disease is caused by variants affecting the gene represented in this entry. Pulmonary fibrosis, and/or bone marrow failure syndrome, telomere-related, 3 (PFBMFT3) [MIM:616373] An autosomal dominant disease associated with shortened telomeres. Pulmonary fibrosis is the most common manifestation. Other manifestations include aplastic anemia due to bone marrow failure, hepatic fibrosis, and increased cancer risk, particularly myelodysplastic syndrome and acute myeloid leukemia. Phenotype, age at onset, and severity are determined by telomere length. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. The PIP-box (PCNA interacting peptide) motif mediates the interaction with PCNA and localization to replication foci.
Miscellaneous. Amplified in gastric tumors. Variant in position: 1264:R->H (in DKCB5), abolishes activity.
Similarity. Belongs to the helicase family. RAD3/XPD subfamily.
Isoforms (8)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9NZ71-1 | 2 | yes |
| Q9NZ71-2 | 1 | |
| Q9NZ71-4 | 4 | |
| Q9NZ71-5 | 5 | |
| Q9NZ71-6 | 6 | |
| Q9NZ71-7 | 7 | |
| Q9NZ71-8 | 8 | |
| Q9NZ71-9 | 9 |
RefSeq proteins (4): NP_001269938, NP_001269939, NP_057518, NP_116575 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR006554 | Helicase-like_DEXD_c2 | Domain |
| IPR006555 | ATP-dep_Helicase_C | Domain |
| IPR010614 | RAD3-like_helicase_DEAD | Domain |
| IPR013020 | Rad3/Chl1-like | Family |
| IPR014013 | Helic_SF1/SF2_ATP-bd_DinG/Rad3 | Domain |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
| IPR030845 | RTEL1 | Family |
| IPR045028 | DinG/Rad3-like | Family |
| IPR049909 | Rtel1_HHD | Domain |
| IPR057498 | Rtel1_ARCH | Domain |
Pfam: PF06733, PF13307, PF23109, PF23116
Catalyzed reactions (Rhea), 1 shown:
- ATP + H2O = ADP + phosphate + H(+) (RHEA:13065)
UniProt features (71 total): sequence variant 27, splice variant 8, region of interest 7, helix 7, binding site 5, sequence conflict 5, short sequence motif 4, compositionally biased region 4, chain 1, domain 1, mutagenesis site 1, strand 1
Structure
Experimental structures (PDB)
3 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7WU8 | X-RAY DIFFRACTION | 1.6 |
| 8P8H | X-RAY DIFFRACTION | 2.3 |
| 8YA8 | X-RAY DIFFRACTION | 2.85 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9NZ71-F1 | 72.64 | 0.40 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (5): 42–49; 145; 163; 172; 207
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 48 | abolishes atpase activity. |
Function
Pathways and Gene Ontology
Reactome pathways
14 pathways
| ID | Pathway |
|---|---|
| R-HSA-171319 | Telomere Extension By Telomerase |
| R-HSA-2564830 | Cytosolic iron-sulfur cluster assembly |
| R-HSA-5693554 | Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA) |
| R-HSA-1430728 | Metabolism |
| R-HSA-157579 | Telomere Maintenance |
| R-HSA-1640170 | Cell Cycle |
| R-HSA-180786 | Extension of Telomeres |
| R-HSA-5685942 | HDR through Homologous Recombination (HRR) |
| R-HSA-5693532 | DNA Double-Strand Break Repair |
| R-HSA-5693537 | Resolution of D-Loop Structures |
| R-HSA-5693538 | Homology Directed Repair |
| R-HSA-5693567 | HDR through Homologous Recombination (HRR) or Single Strand Annealing (SSA) |
| R-HSA-73886 | Chromosome Maintenance |
| R-HSA-73894 | DNA Repair |
MSigDB gene sets: 0 (showing top):
GO Biological Process (21): telomere maintenance (GO:0000723), DNA strand displacement (GO:0000732), DNA repair (GO:0006281), regulation of double-strand break repair via homologous recombination (GO:0010569), replication fork processing (GO:0031297), positive regulation of telomere maintenance (GO:0032206), telomere maintenance in response to DNA damage (GO:0043247), negative regulation of DNA recombination (GO:0045910), telomeric loop disassembly (GO:0090657), mitotic telomere maintenance via semi-conservative replication (GO:1902990), positive regulation of telomere capping (GO:1904355), positive regulation of telomere maintenance via telomere lengthening (GO:1904358), negative regulation of t-circle formation (GO:1904430), negative regulation of telomere maintenance in response to DNA damage (GO:1904506), positive regulation of telomeric loop disassembly (GO:1904535), regulation of DNA recombination (GO:0000018), nucleobase-containing compound metabolic process (GO:0006139), DNA replication (GO:0006260), DNA recombination (GO:0006310), DNA damage response (GO:0006974), regulation of cellular response to stress (GO:0080135)
GO Molecular Function (15): DNA binding (GO:0003677), DNA helicase activity (GO:0003678), ATP binding (GO:0005524), ATP hydrolysis activity (GO:0016887), metal ion binding (GO:0046872), 4 iron, 4 sulfur cluster binding (GO:0051539), DNA polymerase binding (GO:0070182), nucleotide binding (GO:0000166), nucleic acid binding (GO:0003676), helicase activity (GO:0004386), protein binding (GO:0005515), hydrolase activity (GO:0016787), hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides (GO:0016818), isomerase activity (GO:0016853), iron-sulfur cluster binding (GO:0051536)
GO Cellular Component (5): chromosome, telomeric region (GO:0000781), nucleus (GO:0005634), nucleoplasm (GO:0005654), nuclear speck (GO:0016607), nuclear membrane (GO:0031965)
Reactome top-level categories
Rollup of top-11 pathways:
| Category | Pathways |
|---|---|
| Extension of Telomeres | 1 |
| Metabolism | 1 |
| Resolution of D-Loop Structures | 1 |
| Chromosome Maintenance | 1 |
| Telomere Maintenance | 1 |
| HDR through Homologous Recombination (HRR) or Single Strand Annealing (SSA) | 1 |
| DNA Repair | 1 |
| HDR through Homologous Recombination (HRR) | 1 |
| DNA Double-Strand Break Repair | 1 |
| Homology Directed Repair | 1 |
| Cell Cycle | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| DNA metabolic process | 5 |
| DNA recombination | 3 |
| telomere maintenance | 3 |
| positive regulation of telomere maintenance | 3 |
| DNA damage response | 2 |
| regulation of DNA recombination | 2 |
| negative regulation of DNA metabolic process | 2 |
| ATP-dependent activity | 2 |
| binding | 2 |
| catalytic activity | 2 |
| telomere organization | 1 |
| double-strand break repair via homologous recombination | 1 |
| regulation of double-strand break repair | 1 |
| DNA-templated DNA replication maintenance of fidelity | 1 |
| regulation of telomere maintenance | 1 |
| positive regulation of DNA metabolic process | 1 |
| positive regulation of chromosome organization | 1 |
| mitotic cell cycle | 1 |
| telomere maintenance via semi-conservative replication | 1 |
| mitotic cell cycle process | 1 |
| telomere capping | 1 |
| regulation of telomere capping | 1 |
| telomere maintenance via telomere lengthening | 1 |
| regulation of telomere maintenance via telomere lengthening | 1 |
| negative regulation of cellular component organization | 1 |
| t-circle formation | 1 |
| regulation of t-circle formation | 1 |
| negative regulation of telomere maintenance | 1 |
| telomere maintenance in response to DNA damage | 1 |
| negative regulation of response to stimulus | 1 |
| regulation of telomere maintenance in response to DNA damage | 1 |
| telomeric loop disassembly | 1 |
| regulation of telomeric loop disassembly | 1 |
| regulation of DNA metabolic process | 1 |
| primary metabolic process | 1 |
| DNA biosynthetic process | 1 |
| cellular response to stress | 1 |
| nucleic acid binding | 1 |
| helicase activity | 1 |
| ATP-dependent activity, acting on DNA | 1 |
Protein interactions and networks
STRING
2130 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RTEL1 | TERF1 | P54274 | 911 |
| RTEL1 | SLX4 | Q8IY92 | 898 |
| RTEL1 | TINF2 | Q9BSI4 | 884 |
| RTEL1 | CTC1 | Q2NKJ3 | 875 |
| RTEL1 | ANO1 | Q5XXA6 | 871 |
| RTEL1 | TERT | O14746 | 832 |
| RTEL1 | WRAP53 | Q9BUR4 | 809 |
| RTEL1 | MMS19 | Q96T76 | 807 |
| RTEL1 | PARN | O95453 | 799 |
| RTEL1 | NHP2 | Q9NX24 | 797 |
| RTEL1 | DKC1 | O60832 | 795 |
| RTEL1 | PHLDB1 | Q86UU1 | 767 |
| RTEL1 | WRN | Q14191 | 755 |
| RTEL1 | NOP10 | Q9NPE3 | 746 |
| RTEL1 | BRCA1 | P38398 | 739 |
IntAct
62 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MMS19 | CIAO1 | psi-mi:“MI:0915”(physical association) | 0.910 |
| RFXANK | RFXAP | psi-mi:“MI:0914”(association) | 0.780 |
| MMS19 | ERCC2 | psi-mi:“MI:0914”(association) | 0.690 |
| RTEL1 | MMS19 | psi-mi:“MI:0915”(physical association) | 0.640 |
| NEUROG3 | GXYLT2 | psi-mi:“MI:0914”(association) | 0.640 |
| EFNB3 | DENND11 | psi-mi:“MI:0914”(association) | 0.640 |
| SLC31A1 | C2orf72 | psi-mi:“MI:0914”(association) | 0.530 |
| PSME1 | POLR3A | psi-mi:“MI:0914”(association) | 0.530 |
| ISLR | BCKDK | psi-mi:“MI:0914”(association) | 0.530 |
| UBXN11 | COL1A1 | psi-mi:“MI:0914”(association) | 0.530 |
| ZNRD2 | MYO9A | psi-mi:“MI:0914”(association) | 0.530 |
| XRCC5 | BACC1 | psi-mi:“MI:0914”(association) | 0.350 |
| LIMK1 | SH3PXD2B | psi-mi:“MI:0914”(association) | 0.350 |
| NCK1 | APBB2 | psi-mi:“MI:0914”(association) | 0.350 |
| INTS14 | DKFZP586J0619 | psi-mi:“MI:0914”(association) | 0.350 |
| KATNA1 | KATNBL1 | psi-mi:“MI:0914”(association) | 0.350 |
| SASS6 | NFIB | psi-mi:“MI:0914”(association) | 0.350 |
| RIPK4 | VWA8 | psi-mi:“MI:0914”(association) | 0.350 |
| CIAO2B | ELP1 | psi-mi:“MI:0914”(association) | 0.350 |
| CUL3 | PXDNL | psi-mi:“MI:0914”(association) | 0.350 |
| PTGES3 | KIFBP | psi-mi:“MI:0914”(association) | 0.350 |
| KRT2 | IFT56 | psi-mi:“MI:0914”(association) | 0.350 |
| PPP4R1L | IFT56 | psi-mi:“MI:0914”(association) | 0.350 |
| RAMP2 | GXYLT2 | psi-mi:“MI:0914”(association) | 0.350 |
| HCST | TMEM120B | psi-mi:“MI:0914”(association) | 0.350 |
| OSTM1 | ILVBL | psi-mi:“MI:0914”(association) | 0.350 |
| TRIM52 | MEIOC | psi-mi:“MI:0914”(association) | 0.350 |
| PTGES3 | SBNO1 | psi-mi:“MI:0914”(association) | 0.350 |
| TUBB | POTEF | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (132): MMS19 (Affinity Capture-Western), RTEL1 (Affinity Capture-Western), RTEL1 (Affinity Capture-MS), RTEL1 (Affinity Capture-MS), RTEL1 (Affinity Capture-MS), RTEL1 (Affinity Capture-MS), RTEL1 (Affinity Capture-MS), RTEL1 (Affinity Capture-MS), RTEL1 (Affinity Capture-MS), RTEL1 (Affinity Capture-MS), RTEL1 (Affinity Capture-MS), RAD51 (Affinity Capture-MS), VAV2 (Affinity Capture-MS), FAM13A (Affinity Capture-MS), GAS2L1 (Affinity Capture-MS)
ESM2 similar proteins: A1A4I4, A4K436, A6QLH6, D3ZVM4, F1M5F3, F1N2W9, O00459, O08908, O43272, O60336, O95294, P0C928, P23726, P70268, Q0VGM9, Q16512, Q1JQD7, Q1PSW8, Q3KRC5, Q496Y0, Q5M9F8, Q5R812, Q5RE34, Q5RJZ1, Q5RKZ7, Q5XIS9, Q5ZIW1, Q63433, Q63788, Q6H1L8, Q6NS57, Q6NYU2, Q6PFQ7, Q8BZ03, Q8R1T1, Q91XI1, Q920N2, Q92889, Q92994, Q96G46
Diamond homologs: A0A0P0V4R0, A0A8J1M587, A4K436, A8WS58, B0W9F4, B3MSG8, B3NSW1, B4GU19, B4I0K4, B4JNS2, B4L1Z2, B4M891, B4NDG5, B4PZB4, F4HQE2, P0C928, Q0VGM9, Q16X92, Q29FS3, Q3YK19, Q5RE34, Q5RJZ1, Q5SXJ3, Q6H1L8, Q7QEI1, Q93575, Q9NZ71, Q9W484, Q9BX63
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
4264 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 102 |
| Likely pathogenic | 124 |
| Uncertain significance | 1951 |
| Likely benign | 1832 |
| Benign | 96 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1048767 | NM_001283009.2(RTEL1):c.9del (p.Lys3_Ile4insTer) | Pathogenic |
| 1069534 | NM_001283009.2(RTEL1):c.1603G>T (p.Glu535Ter) | Pathogenic |
| 1069734 | NM_001283009.2(RTEL1):c.2098del (p.Arg700fs) | Pathogenic |
| 1070371 | NM_001283009.2(RTEL1):c.3043C>T (p.Gln1015Ter) | Pathogenic |
| 1071517 | NC_000020.10:g.(?62290746)(62290867_?)del | Pathogenic |
| 1071518 | NC_000020.10:g.(?62298812)(62298916_?)del | Pathogenic |
| 1071780 | NM_001283009.2(RTEL1):c.2653G>T (p.Glu885Ter) | Pathogenic |
| 1071913 | NM_001283009.2(RTEL1):c.3766C>T (p.Gln1256Ter) | Pathogenic |
| 1072324 | NM_001283009.2(RTEL1):c.329_332del (p.Ile110fs) | Pathogenic |
| 1072371 | NM_001283009.2(RTEL1):c.3074_3096del (p.Gly1025fs) | Pathogenic |
| 1073438 | NC_000020.10:g.(?62290746)(62312082_?)del | Pathogenic |
| 1075174 | NM_001283009.2(RTEL1):c.3553del (p.Arg1186fs) | Pathogenic |
| 1076689 | NM_001283009.2(RTEL1):c.2554C>T (p.Gln852Ter) | Pathogenic |
| 1076873 | NM_001283009.2(RTEL1):c.1194del (p.Ile398fs) | Pathogenic |
| 1358040 | NM_001283009.2(RTEL1):c.1890dup (p.Leu631fs) | Pathogenic |
| 1361216 | NC_000020.10:g.(?62298812)(62303984_?)del | Pathogenic |
| 1364279 | NM_001283009.2(RTEL1):c.2584_2593del (p.Leu862fs) | Pathogenic |
| 1429452 | NM_001283009.2(RTEL1):c.1244dup (p.Ala417fs) | Pathogenic |
| 1441224 | NM_001283009.2(RTEL1):c.3787C>T (p.Gln1263Ter) | Pathogenic |
| 1443666 | NM_001283009.2(RTEL1):c.2270del (p.Pro757fs) | Pathogenic |
| 1451594 | NM_001283009.2(RTEL1):c.3672_3673del (p.Ile1225fs) | Pathogenic |
| 1452400 | NM_001283009.2(RTEL1):c.2239C>T (p.Gln747Ter) | Pathogenic |
| 1452682 | NM_001283009.2(RTEL1):c.3776_3779del (p.Ala1259fs) | Pathogenic |
| 1453117 | NM_001283009.2(RTEL1):c.836_837del (p.Ile279fs) | Pathogenic |
| 1453809 | NM_001283009.2(RTEL1):c.3124C>T (p.Gln1042Ter) | Pathogenic |
| 1454177 | NM_001283009.2(RTEL1):c.3389dup (p.Thr1131fs) | Pathogenic |
| 1455471 | NM_001283009.2(RTEL1):c.1216del (p.Glu406fs) | Pathogenic |
| 1456365 | NM_001283009.2(RTEL1):c.4_46dup (p.Gln16fs) | Pathogenic |
| 1456476 | NM_001283009.2(RTEL1):c.1263T>A (p.Tyr421Ter) | Pathogenic |
| 1458121 | NM_001283009.2(RTEL1):c.2671_2686del (p.Ala891fs) | Pathogenic |
SpliceAI
8763 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 20:63658460:G:GG | donor_gain | 1.0000 |
| 20:63658462:GAGCA:G | donor_gain | 1.0000 |
| 20:63658464:GCA:G | donor_gain | 1.0000 |
| 20:63658467:G:GG | donor_gain | 1.0000 |
| 20:63661429:A:T | donor_gain | 1.0000 |
| 20:63662885:AGAAG:A | donor_loss | 1.0000 |
| 20:63662886:GAAGG:G | donor_loss | 1.0000 |
| 20:63662887:AAG:A | donor_loss | 1.0000 |
| 20:63662890:GTACA:G | donor_loss | 1.0000 |
| 20:63665997:C:G | acceptor_gain | 1.0000 |
| 20:63675955:GTTTT:G | donor_gain | 1.0000 |
| 20:63679944:G:GT | donor_gain | 1.0000 |
| 20:63685785:CTCCA:C | acceptor_loss | 1.0000 |
| 20:63685786:TCCA:T | acceptor_loss | 1.0000 |
| 20:63685787:CCAG:C | acceptor_loss | 1.0000 |
| 20:63685788:CA:C | acceptor_loss | 1.0000 |
| 20:63685789:A:C | acceptor_loss | 1.0000 |
| 20:63687768:GAT:G | donor_gain | 1.0000 |
| 20:63687791:GGCC:G | donor_gain | 1.0000 |
| 20:63687830:G:GT | donor_gain | 1.0000 |
| 20:63687924:T:TA | acceptor_gain | 1.0000 |
| 20:63688047:GACG:G | donor_gain | 1.0000 |
| 20:63688296:TCCAG:T | acceptor_loss | 1.0000 |
| 20:63688297:CCAG:C | acceptor_loss | 1.0000 |
| 20:63688297:CCAGG:C | acceptor_loss | 1.0000 |
| 20:63688298:CA:C | acceptor_loss | 1.0000 |
| 20:63688298:CAGG:C | acceptor_loss | 1.0000 |
| 20:63688299:A:AC | acceptor_loss | 1.0000 |
| 20:63688383:GCGG:G | donor_gain | 1.0000 |
| 20:63688384:CGGGT:C | donor_loss | 1.0000 |
AlphaMissense
8466 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 20:63661894:C:G | H116D | 1.000 |
| 20:63661904:T:C | L119P | 1.000 |
| 20:63661925:T:C | L126P | 1.000 |
| 20:63667473:T:C | C207R | 1.000 |
| 20:63690124:T:A | W727R | 1.000 |
| 20:63690124:T:C | W727R | 1.000 |
| 20:63661319:A:C | S42R | 0.999 |
| 20:63661321:C:A | S42R | 0.999 |
| 20:63661321:C:G | S42R | 0.999 |
| 20:63661334:G:T | G47W | 0.999 |
| 20:63661335:G:A | G47E | 0.999 |
| 20:63661338:A:T | K48M | 0.999 |
| 20:63661879:T:G | Y111D | 0.999 |
| 20:63661883:C:A | A112D | 0.999 |
| 20:63661889:G:C | R114T | 0.999 |
| 20:63661889:G:T | R114M | 0.999 |
| 20:63661896:C:A | H116Q | 0.999 |
| 20:63661896:C:G | H116Q | 0.999 |
| 20:63661902:A:C | Q118H | 0.999 |
| 20:63661902:A:T | Q118H | 0.999 |
| 20:63661904:T:A | L119H | 0.999 |
| 20:63662566:G:A | G139D | 0.999 |
| 20:63662581:T:C | L144P | 0.999 |
| 20:63662583:T:A | C145S | 0.999 |
| 20:63662583:T:C | C145R | 0.999 |
| 20:63662584:G:A | C145Y | 0.999 |
| 20:63662584:G:C | C145S | 0.999 |
| 20:63662585:C:G | C145W | 0.999 |
| 20:63662838:T:A | C163S | 0.999 |
| 20:63662838:T:C | C163R | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000013875 (20:63687185 C>G), RS1000112414 (20:63677210 A>C), RS1000130386 (20:63658297 C>G), RS1000133386 (20:63674632 C>A,T), RS1000199499 (20:63675609 G>A), RS1000212941 (20:63671607 G>A,T), RS1000285423 (20:63675903 A>G), RS1000323686 (20:63665104 G>A), RS1000327450 (20:63693400 C>A,G,T), RS1000340398 (20:63687116 C>A,T), RS1000354448 (20:63666897 T>C,G), RS1000415954 (20:63671786 C>A,T), RS1000434713 (20:63658507 C>G,T), RS1000624496 (20:63696278 G>A), RS1000666759 (20:63686395 T>C)
Disease associations
OMIM: gene MIM:608833 | disease phenotypes: MIM:615190, MIM:616373, MIM:127550, MIM:616239, MIM:254900, MIM:305000, MIM:178500, MIM:224230, MIM:300755, MIM:614742, MIM:614814
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| pulmonary fibrosis and/or bone marrow failure, Telomere-related, 3 | Definitive | Semidominant |
| dyskeratosis congenita, autosomal recessive 5 | Definitive | Autosomal recessive |
| acute myeloid leukemia | Moderate | Autosomal dominant |
| dyskeratosis congenita | Supportive | Autosomal dominant |
| Hoyeraal-Hreidarsson syndrome | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| pulmonary fibrosis and/or bone marrow failure, Telomere-related, 3 | Definitive | SD |
Mondo (18): dyskeratosis congenita, autosomal recessive 5 (MONDO:0014076), pulmonary fibrosis and/or bone marrow failure, Telomere-related, 3 (MONDO:0014613), dyskeratosis congenita (MONDO:0015780), combined oxidative phosphorylation defect type 24 (MONDO:0014547), pulmonary fibrosis (MONDO:0002771), action myoclonus-renal failure syndrome (MONDO:0009699), dyskeratosis congenita, X-linked (MONDO:0010584), interstitial lung disease 2 (MONDO:0800497), telomere syndrome (MONDO:0100137), dyskeratosis congenita, autosomal recessive 1 (MONDO:0009136), dyskeratosis congenita, autosomal dominant 1 (MONDO:0007485), immunodeficiency disease (MONDO:0021094), pulmonary fibrosis and/or bone marrow failure, Telomere-related, 1 (MONDO:0013878), Adams-Oliver syndrome 3 (MONDO:0013895), dyskeratosis congenita, autosomal dominant 4 (MONDO:0800366)
Orphanet (7): Idiopathic pulmonary fibrosis (Orphanet:2032), Dyskeratosis congenita (Orphanet:1775), Combined oxidative phosphorylation defect type 24 (Orphanet:444458), Action myoclonus-renal failure syndrome (Orphanet:163696), Acute interstitial pneumonia (Orphanet:79126), Idiopathic aplastic anemia (Orphanet:88), Adams-Oliver syndrome (Orphanet:974)
HPO phenotypes
109 total (30 of 109 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000008 | Abnormal morphology of female internal genitalia |
| HP:0000035 | Abnormal testis morphology |
| HP:0000164 | Abnormality of the dentition |
| HP:0000252 | Microcephaly |
| HP:0000327 | Hypoplasia of the maxilla |
| HP:0000365 | Hearing impairment |
| HP:0000498 | Blepharitis |
| HP:0000499 | Abnormal eyelash morphology |
| HP:0000518 | Cataract |
| HP:0000534 | Abnormal eyebrow morphology |
| HP:0000600 | Abnormality of the pharynx |
| HP:0000668 | Hypodontia |
| HP:0000670 | Carious teeth |
| HP:0000679 | Taurodontia |
| HP:0000704 | Periodontitis |
| HP:0000819 | Diabetes mellitus |
| HP:0000939 | Osteoporosis |
| HP:0000975 | Hyperhidrosis |
| HP:0000982 | Palmoplantar keratoderma |
| HP:0001034 | Hypermelanotic macule |
| HP:0001053 | Hypopigmented skin patches |
| HP:0001063 | Acrocyanosis |
| HP:0001231 | Abnormal fingernail morphology |
| HP:0001249 | Intellectual disability |
| HP:0001251 | Ataxia |
| HP:0001263 | Global developmental delay |
| HP:0001265 | Hyporeflexia |
| HP:0001276 | Hypertonia |
GWAS associations
54 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000439_6 | Glioma | 3.000000e-12 |
| GCST000440_1 | Glioma (high-grade) | 3.000000e-09 |
| GCST000440_3 | Glioma (high-grade) | 2.000000e-09 |
| GCST000879_42 | Crohn’s disease | 3.000000e-15 |
| GCST000964_24 | Ulcerative colitis | 2.000000e-10 |
| GCST001058_6 | Glioma | 2.000000e-09 |
| GCST001633_3 | Glioma | 1.000000e-10 |
| GCST001786_26 | Dental caries | 3.000000e-06 |
| GCST001942_22 | Prostate cancer | 4.000000e-16 |
| GCST002474_3 | Glioma (high-grade) | 5.000000e-19 |
| GCST003061_16 | Cutaneous malignant melanoma | 1.000000e-06 |
| GCST003184_35 | Atopic dermatitis | 7.000000e-13 |
| GCST004131_34 | Inflammatory bowel disease | 3.000000e-26 |
| GCST004132_110 | Crohn’s disease | 3.000000e-13 |
| GCST004133_15 | Ulcerative colitis | 9.000000e-17 |
| GCST004347_14 | Glioma | 2.000000e-42 |
| GCST004348_12 | Non-glioblastoma glioma | 7.000000e-10 |
| GCST004349_9 | Glioblastoma | 4.000000e-46 |
| GCST004607_186 | Plateletcrit | 3.000000e-11 |
| GCST005038_56 | Allergic disease (asthma, hay fever or eczema) | 4.000000e-14 |
| GCST005143_7 | Telomere length | 3.000000e-07 |
| GCST005931_16 | Glioma | 4.000000e-21 |
| GCST005931_17 | Glioma | 1.000000e-13 |
| GCST005932_10 | Glioblastoma | 1.000000e-19 |
| GCST005932_11 | Glioblastoma | 1.000000e-16 |
| GCST005933_6 | Non-glioblastoma glioma | 3.000000e-07 |
| GCST006480_13 | Glioblastoma (age-stratified) | 8.000000e-13 |
| GCST006480_20 | Glioblastoma (age-stratified) | 7.000000e-19 |
| GCST006480_7 | Glioblastoma (age-stratified) | 1.000000e-14 |
| GCST007563_15 | Allergic disease (asthma, hay fever or eczema) | 3.000000e-08 |
EFO canonical traits (6, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007985 | platelet crit |
| EFO:0004847 | age at onset |
| EFO:0010519 | pantothenic acid measurement |
| EFO:0000768 | idiopathic pulmonary fibrosis |
| EFO:0004632 | nevus count |
| EFO:0004527 | mean corpuscular hemoglobin |
MeSH disease descriptors (7)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D019871 | Dyskeratosis Congenita | C15.378.190.223.500.750; C16.131.831.150; C16.320.322.108; C16.320.850.235; C17.800.804.150; C17.800.827.235 |
| D015470 | Leukemia, Myeloid, Acute | C04.557.337.539.275; C15.378.508.539.275 |
| D008831 | Microcephaly | C05.660.207.620; C10.500.507.400.500; C16.131.621.207.620; C16.131.666.507.400.500 |
| D011658 | Pulmonary Fibrosis | C08.381.483.652; C23.550.355.644 |
| C565079 | Dyskeratosis Congenita, Autosomal Dominant (supp.) | |
| C565611 | Dyskeratosis Congenita, Autosomal Recessive (supp.) | |
| C536068 | Hoyeraal Hreidarsson syndrome (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
28 total (human), top 28 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, increases methylation | 2 |
| FR900359 | increases phosphorylation | 1 |
| alpha-pinene | affects cotreatment, increases oxidation, increases abundance | 1 |
| benzo(e)pyrene | decreases methylation | 1 |
| aflatoxin B2 | decreases methylation | 1 |
| methacrylaldehyde | increases abundance, affects cotreatment, increases oxidation | 1 |
| diallyl trisulfide | decreases expression | 1 |
| tamibarotene | affects expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| Decitabine | decreases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Acrolein | affects cotreatment, increases oxidation, increases abundance | 1 |
| Air Pollutants | affects cotreatment, increases abundance, increases oxidation | 1 |
| Vehicle Emissions | decreases expression, increases abundance | 1 |
| Caffeine | affects phosphorylation | 1 |
| Cyclophosphamide | increases expression | 1 |
| Diazinon | increases methylation | 1 |
| Methapyrilene | decreases methylation | 1 |
| Ozone | affects cotreatment, increases oxidation, increases abundance | 1 |
| Smoke | decreases expression | 1 |
| Tretinoin | decreases expression | 1 |
| Urethane | decreases expression | 1 |
| Valproic Acid | increases methylation | 1 |
| Aflatoxin B1 | increases methylation | 1 |
| Acrylamide | decreases expression | 1 |
| Particulate Matter | decreases expression, increases abundance | 1 |
| Volatile Organic Compounds | affects cotreatment, increases oxidation | 1 |
Clinical trials (associated diseases)
520 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00199147 | PHASE4 | UNKNOWN | Efficacy of G-CSF-Priming in Elderly AML Patients |
| NCT00304447 | PHASE4 | COMPLETED | Study Evaluating the Effect of Corticosteroids on Mylotarg® Infusion-Related Adverse Events in Patients With Leukemia |
| NCT00464217 | PHASE4 | COMPLETED | Treatment of the Acute Myeloblastic Leukaemia in Patients Over 65 Years |
| NCT00487448 | PHASE4 | COMPLETED | SMD_FLAG-IDA_98: FLAG-IDA in Induction Treatment of High Risk Myelodysplastic Syndromes or Secondary Acute Myeloblastic Leukemia |
| NCT00488709 | PHASE4 | COMPLETED | Fludarabine, Cytarabine, Topotecan in Treating Patients With Relapsed or Refractory Acute Myeloid Leukemia |
| NCT00686543 | PHASE4 | COMPLETED | Oral Posaconazole in High Risk Patients With Gastrointestinal Dysfunction (Study P05115) |
| NCT01041040 | PHASE4 | COMPLETED | LAM07: Study to Analyze the Efficacy of a Risk Adapted Treatment Strategy, Including Gemtuzumab Ozogamicin (GO) During Consolidation, for Patients With Acute Myeloid Leukemia (AML) |
| NCT01198054 | PHASE4 | TERMINATED | LENA-LMA-5:Lenalidomide in Acute Myeloid Leukemia (AML) |
| NCT01200355 | PHASE4 | COMPLETED | Posaconazole Versus Micafungin for Prophylaxis Against Invasive Fungal Infections During Neutropenia in Patients Undergoing Chemotherapy for Acute Myelogenous Leukemia, Acute Lymphocytic Leukemia or Myelodysplastic Syndrome |
| NCT01347996 | PHASE4 | COMPLETED | Maintenance Therapy With Ceplene® (Histamine) and IL-2 on Immune Response and MRD in Acute Myeloid Leukemia |
| NCT01587430 | PHASE4 | UNKNOWN | 3 Anthracyclines, 2 Types of Consolidation With Different ARA-C Doses and Maintenance in Adult Acute Myeloid Leukemia |
| NCT01819792 | PHASE4 | COMPLETED | Respiratory Viral Infections During Acute Myeloid Leukemia (AML)Chemotherapy Related Aplasia |
| NCT02024308 | PHASE4 | UNKNOWN | AML1-ETO Acute Myeloid Leukemia With Fludarabine and Cytarabine Chemotherapy |
| NCT02027064 | PHASE4 | UNKNOWN | Interferon for the Intervention of Molecular Relapse in t (8; 21) AML After Allo-HSCT |
| NCT02277847 | PHASE4 | UNKNOWN | Idarubicin at Different Dosages as Induction Therapy for Newly Diagnosed Acute Myeloid Leukaemia |
| NCT02386800 | PHASE4 | ACTIVE_NOT_RECRUITING | CINC424A2X01B Rollover Protocol |
| NCT02926586 | PHASE4 | COMPLETED | Fludarabine and Cytarabine Versus High-dose Cytarabine for CBF-AML |
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Related Atlas pages
- Associated diseases: pulmonary fibrosis and/or bone marrow failure, Telomere-related, 3, acute myeloid leukemia by FAB classification, dyskeratosis congenita, autosomal recessive 5, dyskeratosis congenita, Hoyeraal-Hreidarsson syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): action myoclonus-renal failure syndrome, acute myeloid leukemia, Adams-Oliver syndrome 3, anorectal malformation, atopic eczema, central nervous system cancer, combined oxidative phosphorylation defect type 24, cutaneous melanoma, dental caries, dyskeratosis congenita, dyskeratosis congenita, autosomal dominant 1, dyskeratosis congenita, autosomal dominant 4, dyskeratosis congenita, autosomal recessive 1, dyskeratosis congenita, autosomal recessive 5, dyskeratosis congenita, X-linked, glioblastoma, glioma, Hoyeraal-Hreidarsson syndrome, immunodeficiency disease, interstitial lung disease 2, pulmonary fibrosis, pulmonary fibrosis and/or bone marrow failure, Telomere-related, 1, pulmonary fibrosis and/or bone marrow failure, Telomere-related, 3, telomere syndrome