RYR1
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Also known as RYRPPP1R137
Summary
RYR1 (ryanodine receptor 1, HGNC:10483) is a protein-coding gene on chromosome 19q13.2, encoding Ryanodine receptor 1 (P21817). Cytosolic calcium-activated calcium channel that mediates the release of Ca(2+) from the sarcoplasmic reticulum into the cytosol and thereby plays a key role in triggering muscle contraction following depolarization of T-tubules.
This gene encodes a ryanodine receptor found in skeletal muscle. The encoded protein functions as a calcium release channel in the sarcoplasmic reticulum but also serves to connect the sarcoplasmic reticulum and transverse tubule. Mutations in this gene are associated with malignant hyperthermia susceptibility, central core disease, and minicore myopathy with external ophthalmoplegia. Alternatively spliced transcripts encoding different isoforms have been described.
Source: NCBI Gene 6261 — RefSeq curated summary.
At a glance
- Gene–disease (curated): malignant hyperthermia, susceptibility to, 1 (Definitive, ClinGen) — +9 more curated relationships
- GWAS associations: 8
- Clinical variants (ClinVar): 10,759 total — 340 pathogenic, 334 likely-pathogenic
- Phenotypes (HPO): 223
- Druggable target: yes
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity no evidence
- MANE Select transcript:
NM_000540
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:10483 |
| Approved symbol | RYR1 |
| Name | ryanodine receptor 1 |
| Location | 19q13.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | RYR, PPP1R137 |
| Ensembl gene | ENSG00000196218 |
| Ensembl biotype | protein_coding |
| OMIM | 180901 |
| Entrez | 6261 |
Gene structure
Transcript identifiers
Ensembl transcripts: 14 — 5 protein_coding, 4 nonsense_mediated_decay, 3 retained_intron, 2 protein_coding_CDS_not_defined
ENST00000355481, ENST00000359596, ENST00000593322, ENST00000594111, ENST00000594335, ENST00000596431, ENST00000599547, ENST00000600337, ENST00000601514, ENST00000688602, ENST00000689936, ENST00000692547, ENST00000713952, ENST00000713953
RefSeq mRNA: 2 — MANE Select: NM_000540
NM_000540, NM_001042723
CCDS: CCDS33011, CCDS42563
Canonical transcript exons
ENST00000359596 — 106 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000368631 | 38567773 | 38567917 |
| ENSE00000368639 | 38580370 | 38580504 |
| ENSE00000780393 | 38586091 | 38586191 |
| ENSE00000780396 | 38585938 | 38586002 |
| ENSE00000780398 | 38579982 | 38580128 |
| ENSE00000780399 | 38578144 | 38578204 |
| ENSE00000780400 | 38577918 | 38578048 |
| ENSE00000780406 | 38566911 | 38566987 |
| ENSE00000780407 | 38564959 | 38565771 |
| ENSE00000826242 | 38572019 | 38572270 |
| ENSE00000826243 | 38570607 | 38570693 |
| ENSE00001749062 | 38573177 | 38573307 |
| ENSE00001752702 | 38584943 | 38585099 |
| ENSE00001793829 | 38586525 | 38586576 |
| ENSE00002278946 | 38575919 | 38575961 |
| ENSE00003518437 | 38546445 | 38546526 |
| ENSE00003576440 | 38561113 | 38561454 |
| ENSE00003590641 | 38548233 | 38548420 |
| ENSE00003590781 | 38543532 | 38543660 |
| ENSE00003596210 | 38543771 | 38543875 |
| ENSE00003649416 | 38537880 | 38537960 |
| ENSE00003663907 | 38543347 | 38543435 |
| ENSE00003935766 | 38587325 | 38587564 |
| ENSE00004021898 | 38443718 | 38443796 |
| ENSE00004021899 | 38510498 | 38510565 |
| ENSE00004021900 | 38477710 | 38477870 |
| ENSE00004021901 | 38535316 | 38535392 |
| ENSE00004021902 | 38483290 | 38483516 |
| ENSE00004021903 | 38492490 | 38492636 |
| ENSE00004021904 | 38469305 | 38469513 |
| ENSE00004021905 | 38443558 | 38443632 |
| ENSE00004021906 | 38532671 | 38532736 |
| ENSE00004021907 | 38500821 | 38500990 |
| ENSE00004021908 | 38506303 | 38506377 |
| ENSE00004021909 | 38532490 | 38532541 |
| ENSE00004021910 | 38504748 | 38504911 |
| ENSE00004021911 | 38475318 | 38475450 |
| ENSE00004021912 | 38528599 | 38528695 |
| ENSE00004021913 | 38504220 | 38504360 |
| ENSE00004021916 | 38463747 | 38463850 |
| ENSE00004021918 | 38494352 | 38494625 |
| ENSE00004021919 | 38466091 | 38466398 |
| ENSE00004021921 | 38534720 | 38534819 |
| ENSE00004021922 | 38510660 | 38510781 |
| ENSE00004021923 | 38506471 | 38506546 |
| ENSE00004021924 | 38444149 | 38444261 |
| ENSE00004021925 | 38523217 | 38523309 |
| ENSE00004021926 | 38455451 | 38455546 |
| ENSE00004021928 | 38507712 | 38507827 |
| ENSE00004021929 | 38433691 | 38433874 |
| ENSE00004021930 | 38499108 | 38499243 |
| ENSE00004021931 | 38440745 | 38440864 |
| ENSE00004021932 | 38468966 | 38469140 |
| ENSE00004021933 | 38489177 | 38489443 |
| ENSE00004021934 | 38446472 | 38446565 |
| ENSE00004021935 | 38496860 | 38496954 |
| ENSE00004021936 | 38499908 | 38500016 |
| ENSE00004021937 | 38496409 | 38496541 |
| ENSE00004021938 | 38506829 | 38506952 |
| ENSE00004021939 | 38473377 | 38473771 |
| ENSE00004021940 | 38448355 | 38448511 |
| ENSE00004021941 | 38459146 | 38459338 |
| ENSE00004021942 | 38523915 | 38523929 |
| ENSE00004021943 | 38502880 | 38502970 |
| ENSE00004021944 | 38526993 | 38527052 |
| ENSE00004021945 | 38523028 | 38523115 |
| ENSE00004021946 | 38467610 | 38467812 |
| ENSE00004021947 | 38525332 | 38525502 |
| ENSE00004021948 | 38528951 | 38529057 |
| ENSE00004021949 | 38512245 | 38512483 |
| ENSE00004021950 | 38478435 | 38478600 |
| ENSE00004021951 | 38496215 | 38496329 |
| ENSE00004021952 | 38490076 | 38490276 |
| ENSE00004021953 | 38455633 | 38455751 |
| ENSE00004021954 | 38499635 | 38499821 |
| ENSE00004021956 | 38448649 | 38448813 |
| ENSE00004021957 | 38527647 | 38527784 |
| ENSE00004021958 | 38460375 | 38460591 |
| ENSE00004021959 | 38490621 | 38490732 |
| ENSE00004021960 | 38505003 | 38505081 |
| ENSE00004021961 | 38528306 | 38528418 |
| ENSE00004021962 | 38444584 | 38444677 |
| ENSE00004021963 | 38451764 | 38451885 |
| ENSE00004021964 | 38483027 | 38483113 |
| ENSE00004021965 | 38463423 | 38463527 |
| ENSE00004021966 | 38515026 | 38515107 |
| ENSE00004021967 | 38485590 | 38486202 |
| ENSE00004021968 | 38458051 | 38458292 |
| ENSE00004021969 | 38511561 | 38511610 |
| ENSE00004021970 | 38452819 | 38453014 |
| ENSE00004021971 | 38517359 | 38517691 |
| ENSE00004021972 | 38500606 | 38500726 |
| ENSE00004021973 | 38519214 | 38519454 |
| ENSE00004021974 | 38512072 | 38512132 |
| ENSE00004021975 | 38535997 | 38536070 |
| ENSE00004021977 | 38536750 | 38536767 |
| ENSE00004021978 | 38505309 | 38505398 |
| ENSE00004021979 | 38516087 | 38516217 |
| ENSE00004021980 | 38464639 | 38464722 |
| ENSE00004021982 | 38442349 | 38442453 |
| ENSE00004021983 | 38535141 | 38535220 |
| ENSE00004021984 | 38502507 | 38502727 |
| ENSE00004021985 | 38446694 | 38446768 |
| ENSE00004021986 | 38455235 | 38455370 |
| ENSE00004021987 | 38505806 | 38505946 |
| ENSE00004021988 | 38457497 | 38457630 |
Expression profiles
Bgee: expression breadth ubiquitous, 214 present calls, max score 99.63.
FANTOM5 (CAGE): breadth broad, TPM avg 6.1775 / max 1164.4710, expressed in 456 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 175635 | 5.5988 | 433 |
| 175634 | 0.3747 | 155 |
| 175633 | 0.1710 | 79 |
| 175639 | 0.0330 | 16 |
Top tissues by expression
278 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| gluteal muscle | UBERON:0002000 | 99.63 | gold quality |
| gastrocnemius | UBERON:0001388 | 99.58 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 99.32 | gold quality |
| triceps brachii | UBERON:0001509 | 99.26 | gold quality |
| vastus lateralis | UBERON:0001379 | 99.25 | gold quality |
| quadriceps femoris | UBERON:0001377 | 99.24 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 99.24 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 99.04 | gold quality |
| tibialis anterior | UBERON:0001385 | 98.99 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 98.79 | gold quality |
| biceps brachii | UBERON:0001507 | 98.40 | gold quality |
| muscle organ | UBERON:0001630 | 98.29 | gold quality |
| deltoid | UBERON:0001476 | 98.23 | gold quality |
| diaphragm | UBERON:0001103 | 98.13 | gold quality |
| muscle of leg | UBERON:0001383 | 97.98 | gold quality |
| body of tongue | UBERON:0011876 | 97.49 | gold quality |
| muscle tissue | UBERON:0002385 | 92.00 | gold quality |
| sural nerve | UBERON:0015488 | 89.93 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 88.24 | gold quality |
| tongue | UBERON:0001723 | 86.60 | gold quality |
| right frontal lobe | UBERON:0002810 | 86.40 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 86.24 | gold quality |
| cerebellar cortex | UBERON:0002129 | 86.07 | gold quality |
| amygdala | UBERON:0001876 | 85.75 | gold quality |
| cingulate cortex | UBERON:0003027 | 85.62 | gold quality |
| hypothalamus | UBERON:0001898 | 85.61 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 85.55 | gold quality |
| caudate nucleus | UBERON:0001873 | 85.25 | gold quality |
| cerebellum | UBERON:0002037 | 84.09 | gold quality |
| left testis | UBERON:0004533 | 83.84 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 7.12 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
26 targeting RYR1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3910 | 99.95 | 71.13 | 2227 |
| HSA-MIR-22-3P | 99.93 | 68.13 | 917 |
| HSA-MIR-124-3P | 99.89 | 73.74 | 3043 |
| HSA-MIR-506-3P | 99.89 | 73.55 | 3057 |
| HSA-MIR-4447 | 99.85 | 67.81 | 2900 |
| HSA-MIR-6842-5P | 99.80 | 67.54 | 1587 |
| HSA-MIR-7110-5P | 99.80 | 67.84 | 1712 |
| HSA-MIR-6794-5P | 99.76 | 66.38 | 1048 |
| HSA-MIR-92A-2-5P | 99.75 | 67.01 | 2164 |
| HSA-MIR-3714 | 99.71 | 70.74 | 2671 |
| HSA-MIR-4716-3P | 99.69 | 66.73 | 1022 |
| HSA-MIR-6134 | 99.63 | 65.68 | 1537 |
| HSA-MIR-6752-5P | 99.59 | 67.32 | 1243 |
| HSA-MIR-4472 | 99.56 | 66.08 | 1478 |
| HSA-MIR-7854-3P | 99.08 | 66.26 | 1117 |
| HSA-MIR-328-5P | 99.08 | 64.65 | 1000 |
| HSA-MIR-6885-5P | 98.71 | 64.33 | 902 |
| HSA-MIR-6810-5P | 98.29 | 66.21 | 975 |
| HSA-MIR-6882-3P | 98.23 | 67.01 | 1119 |
| HSA-MIR-4640-5P | 97.42 | 66.33 | 1543 |
| HSA-MIR-4712-5P | 97.24 | 67.79 | 775 |
| HSA-MIR-770-5P | 97.24 | 68.10 | 758 |
| HSA-MIR-4726-5P | 97.24 | 65.67 | 1299 |
| HSA-MIR-6085 | 96.57 | 64.11 | 621 |
| HSA-MIR-4652-5P | 96.46 | 64.22 | 553 |
| HSA-MIR-6813-5P | 94.68 | 64.20 | 588 |
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- genotype-phenotype comparison of the Swiss malignant hyperthermia population (PMID:11668625)
- The mutations concentrated mostly in the myoplasmic and luminal loops linking, respectively, transmembrane domains T1 and T2 or T3 and T4 of ryanodine receptor (RYR1). (PMID:11709545)
- point mutations in the RYR1 gene are strongly associated with the MH phenotype (PMID:12059893)
- Malignant hyperthermia associated with exercise-induced rhabdomyolysis, congenital abnormalities and a novel RYR1 mutation in New Zealand and Australian pedigrees. (PMID:12066726)
- Results describe a novel homozygous missense mutation (P3527S) in the ryanodine receptor type 1 gene, a positional candidate gene responsible for the autosomal dominant congenital myopathy central core disease. (PMID:12112081)
- RYR1 mutations causing central core disease are associated with more severe malignant hyperthermia in vitro contracture test (IVCT) phenotypes. (PMID:12124989)
- Congenital myopathy appears to be associated with recessive RYR1 mutations. (PMID:12136074)
- Principal mutation hotspot for central core disease and related myopathies in the C-terminal transmembrane region of the RYR1 gene. (PMID:12565913)
- The same haplotype was shown to segregate with the individuals carrying the Arg614Cys mutation in chromosome 19; however, the other susceptible and equivocal individuals do not share this haplotype. (PMID:14500992)
- findings indicate a novel negative feedback mechanism between RyR1 channel activity and CD38 abundance acts in cADPr signal transduction in lymphoma b-cells (PMID:14596927)
- RyR1 Ile2182Phe and Gly2375Ala mutations are pathogenic for malignant hyperthermia (PMID:14641996)
- there is a specific binding subdomain in RyR1 and RyR2 participating in RyR-RyR interaction (PMID:14722100)
- DNA mutational analysis in central core disease patients in the UK (PMID:14985404)
- The r401C substitution in the RYR1 geneis associated with this adult onset multi/minicore myopathy. (PMID:14999498)
- This is the 1st evidence that RyRs directly control primary beta cell insulin secretion independently of glucose & by 2 mechanisms, including a novel cytosolic Ca2+-independent mechanism likely involving changes in Ca2+ in the lumens of non-ER organelles. (PMID:15033925)
- The presence of RyR1 mutations with impact on calcium homeostasis emphasizes the functional significance of exon 44. (PMID:15210166)
- role of the sequence surrounding M4 in ryanodine receptors in membrane association and function was investigated (PMID:15226293)
- RYR1 enhances the production of the inflammatory cytokine IL-6, which may in turn affect signaling pathways responsible for the trophic status of muscle fibers. (PMID:15299003)
- Patients with RYR1-related congenital myopathies have a recognizable pattern of muscle involvement irrespective of the variability of associated histopathological findings. (PMID:15564033)
- analysis of skeletal muscle cells expressing recombinant ryanodine receptors with malignant hyperthermia and central core disease mutations (PMID:15689621)
- the Ca2+ release channel sensitive to NAADP in T-lymphocytes is the ryanodine receptor (PMID:15774471)
- We suggest that aberrant splicing of RyR1 mRNAs might contribute to impaired Ca2+ homeostasis in DM1 muscle (PMID:15972723)
- Mutations in the ryanodine receptor gene might affect the function of this intracellular calcium release channel and lead to neuromuscular disorders. (PMID:16084090)
- in addition to negatively charged residues on the lumenal side, rings of four negative charges formed by D4938 and D4945 in the cytosolic vestibule determine RyR ion fluxes (PMID:16239337)
- The development of a heterozygous mouse model of the Y522S RyR1 mutation, including their susceptibility to heat and anesthetic-induced malignant hyperthermia, is reported. (PMID:16284304)
- functional effect of two recently identified recessive ryanodine receptor 1 amino acid substitutions, P3527S and V4849I, as well as that of R999H, another substitution that was identified in two siblings that were affected by multi-minicore disease (PMID:16372898)
- Recessive mutations of RYR1 domains are prevalent in multi-minicore disease with external ophthalmoplegia, suggesting a different pathomechanism from that of central core disease. (PMID:16380615)
- expression of TRPC3 is tightly regulated during muscle cell differentiation and functional interaction between TRPC3 and RyR1 may regulate the gain of SR Ca(2+) release independent of SR Ca(2+) load (PMID:16484216)
- 16 novel mutations are associated with susceptibility to malignant hyperthermia. (PMID:16835904)
- The RYR1 p.Val4927_Ile4928del deletion reduces Ca(2+) release by disrupting Ca(2+) gating and eliminating Ca(2+) permeation through the open channel. (PMID:16958053)
- RYR1 undergoes polymorphic, tissue-specific, and developmentally regulated allele silencing and this unveils recessive mutations in patients with core myopathies. (PMID:17033962)
- A discrete subset of cysteines is likely to be involved in the functional response of type-1 ryanodine receptor to different redox modifications (S-nitrosylation, S-glutathionylation, and oxidation to disulfides). (PMID:17071618)
- Our data suggest genetic heterogeneity in autosomal dominant core myopathies and the existence of additional unidentified genes. (PMID:17190947)
- study shows that recessive inheritance in central core disease may be more common than previously appreciated (PMID:17226826)
- together, our results demonstrate that RyR1 differs markedly from RyR2 with respect to their responses to Ca(2+) overload and luminal Ca(2+). (PMID:17259277)
- Altered tetramer assembly/stability coupled with subtle chronic changes in Ca2+ homoeostasis over the long term may contribute to the development of core lesions and incomplete malignant hyperthermia susceptibility. (PMID:17293538)
- Phenotypical spectrum associated with RYR1 mutations and indicate that RYR1 screening should be considered in centronuclear myopathy (PMID:17376685)
- Four of 10 patients had a heterozygous mutation, three missense and one deletion, all in the C-terminal domain of RYR1. (PMID:17538032)
- Data showed for the first time that human dendritic cells preferentially express RyR1 mRNA among RyR isoforms. (PMID:17707769)
- The cardiac ryanodine receptor mutations linked to cardiac arrhythmia and sudden death alter the threshold for store-overload-induced Ca2+ release. (PMID:18092949)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ryr1a | ENSDARG00000011422 |
| danio_rerio | ryr1b | ENSDARG00000023797 |
| mus_musculus | Ryr1 | ENSMUSG00000030592 |
| rattus_norvegicus | Ryr1 | ENSRNOG00000020557 |
| drosophila_melanogaster | RyR | FBGN0011286 |
| caenorhabditis_elegans | WBGENE00006801 |
Paralogs (5): ITPR3 (ENSG00000096433), ITPR2 (ENSG00000123104), ITPR1 (ENSG00000150995), RYR2 (ENSG00000198626), RYR3 (ENSG00000198838)
Protein
Protein identifiers
Ryanodine receptor 1 — P21817 (reviewed: P21817)
Alternative names: Skeletal muscle calcium release channel, Skeletal muscle ryanodine receptor, Skeletal muscle-type ryanodine receptor, Type 1 ryanodine receptor
All UniProt accessions (8): A0A8I5KSR1, A0A8I5KUY6, A0AAQ5BH72, A0AAQ5BH76, P21817, M0R014, M0R0S0, M0R127
UniProt curated annotations — full annotation on UniProt →
Function. Cytosolic calcium-activated calcium channel that mediates the release of Ca(2+) from the sarcoplasmic reticulum into the cytosol and thereby plays a key role in triggering muscle contraction following depolarization of T-tubules. Repeated very high-level exercise increases the open probability of the channel and leads to Ca(2+) leaking into the cytoplasm. Can also mediate the release of Ca(2+) from intracellular stores in neurons, and may thereby promote prolonged Ca(2+) signaling in the brain. Required for normal embryonic development of muscle fibers and skeletal muscle. Required for normal heart morphogenesis, skin development and ossification during embryogenesis.
Subunit / interactions. Homotetramer. Can also form heterotetramers with RYR2. Identified in a complex composed of RYR1, PDE4D, PKA, FKBP1A and protein phosphatase 1 (PP1). Repeated very high-level exercise decreases interaction with PDE4D and protein phosphatase 1 (PP1). Interacts with CALM; CALM with bound calcium inhibits the RYR1 channel activity. Interacts with S100A1. Interacts with FKBP1A; this stabilizes the closed conformation of the channel. Interacts with CACNA1S; interaction with CACNA1S is important for activation of the RYR1 channel. Interacts with CACNB1. Interacts with TRDN and ASPH; these interactions stimulate RYR1 channel activity. Interacts with SELENON. Interacts with scorpion calcins (AC P0DPT1; AC P0DM30; AC A0A1L4BJ42; AC P59868; AC P60254; AC B8QG00; AC L0GBR1; AC P60252; AC P60253).
Subcellular location. Sarcoplasmic reticulum membrane.
Tissue specificity. Skeletal muscle and brain (cerebellum and hippocampus).
Post-translational modifications. Channel activity is modulated by phosphorylation. Phosphorylation at Ser-2843 may increase channel activity. Repeated very high-level exercise increases phosphorylation at Ser-2843. Activated by reversible S-nitrosylation. Repeated very high-level exercise increases S-nitrosylation.
Disease relevance. Malignant hyperthermia 1 (MHS1) [MIM:145600] Autosomal dominant pharmacogenetic disorder of skeletal muscle and is one of the main causes of death due to anesthesia. In susceptible people, an MH episode can be triggered by all commonly used inhalational anesthetics such as halothane and by depolarizing muscle relaxants such as succinylcholine. The clinical features of the myopathy are hyperthermia, accelerated muscle metabolism, contractures, metabolic acidosis, tachycardia and death, if not treated with the postsynaptic muscle relaxant, dantrolene. Susceptibility to MH can be determined with the ‘in vitro’ contracture test (IVCT): observing the magnitude of contractures induced in strips of muscle tissue by caffeine alone and halothane alone. Patients with normal response are MH normal (MHN), those with abnormal response to caffeine alone or halothane alone are MH equivocal (MHE(C) and MHE(H) respectively). Disease susceptibility is associated with variants affecting the gene represented in this entry. Congenital myopathy 1A, autosomal dominant, with susceptibility to malignant hyperthermia (CMYO1A) [MIM:117000] An autosomal dominant myopathy characterized by hypotonia and proximal muscle weakness primarily affecting the lower limbs, beginning in infancy or early childhood. Some patients manifest later onset of symptoms. The clinical course of the disorder is usually slow or non-progressive in adulthood, and the severity of the symptoms is variable. Affected individuals typically show delayed motor development and usually achieve independent walking, although many have difficulty running or climbing stairs. Additional features often include mild facial weakness, joint laxity, shoulder girdle weakness, and skeletal manifestations, such as dislocation of the hips, foot deformities, scoliosis, and Achilles tendon contractures. Microscopic examination of affected skeletal muscle reveals a predominance of type I fibers containing amorphous-looking areas (cores) that do not stain with oxidative and phosphorylase histochemical techniques. Additional pathologic findings may also be observed on muscle biopsy. CMYO1A affected individuals are at risk for malignant hyperthermia, and both disorders may be present in the same family. The disease is caused by variants affecting the gene represented in this entry. Congenital myopathy 1B, autosomal recessive (CMYO1B) [MIM:255320] An autosomal recessive myopathy characterized by severe hypotonia and generalized muscle weakness and atrophy apparent soon after birth or in early childhood. Affected individuals show delayed motor development, proximal muscle weakness with axial and shoulder girdle involvement, difficulty walking or running, external ophthalmoplegia, and bulbar weakness often resulting in feeding difficulties and respiratory insufficiency. Disease severity is variable. Some affected individuals show symptoms in utero, including reduced fetal movements, polyhydramnios, and intrauterine growth restriction. Some patients have lethal fetal akinesia with death in utero. Muscle biopsy can show variable findings, including multiple and poorly circumscribed areas of sarcomere disorganization and mitochondria depletion (areas termed minicores). Typically, no dystrophic signs, such as muscle fiber necrosis or regeneration or significant endomysial fibrosis, are present. The disease is caused by variants affecting the gene represented in this entry. Defects in RYR1 may be a cause of Samaritan myopathy, a congenital myopathy with benign course. Patients display severe hypotonia and respiratory distress at birth. Unlike other congenital myopathies, the health status constantly improves and patients are minimally affected at adulthood. King-Denborough syndrome (KDS) [MIM:619542] An autosomal dominant disorder characterized by the triad of dysmorphic features, congenital myopathy, and susceptibility to malignant hyperthermia. Variable expressivity has been reported in several cases. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. The calcium release is activated by increased cytosolic calcium levels, by nitric oxyde (NO), caffeine and ATP. Channel activity is modulated by the alkaloid ryanodine that binds to the open Ca-release channel with high affinity. At low concentrations, ryanodine maintains the channel in an open conformation. High ryanodine concentrations inhibit channel activity. Channel activity is regulated by calmodulin (CALM). Channel activity is inhibited by magnesium ions, possibly by competition for calcium binding sites.
Domain organisation. The calcium release channel activity resides in the C-terminal region while the remaining part of the protein constitutes the ‘foot’ structure spanning the junctional gap between the sarcoplasmic reticulum (SR) and the T-tubule. Pore opening is mediated via the cytoplasmic calcium-binding domains that mediate a small rotation of the channel-forming transmembrane regions that then leads to channel opening.
Miscellaneous. Coexpression of normal and mutant Thr-4898 RYR1 in a 1:1 ratio produces RYR1 channels with normal halothane and caffeine sensitivities, but maximal levels of Ca(2+) release are reduced by 67%. Binding of [3H]ryanodine indicates that the heterozygous channel is activated by Ca(2+) concentrations 4-fold lower than normal. Single-cell analysis of cotransfected cells shows a significantly increased resting cytoplasmic Ca(2+) level and a significantly reduced luminal Ca(2+) level. These data indicated a leaky channel, possibly caused by a reduction in the Ca(2+) concentration required for channel activation. Comparison with 2 other coexpressed mutant/normal channels suggests that the Thr-4898 mutation produces one of the most abnormal RYR1 channels that has been investigated, and this level of abnormality is reflected in the severe and penetrant phenotype of affected CCD individuals.
Similarity. Belongs to the ryanodine receptor (TC 1.A.3.1) family. RYR1 subfamily.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P21817-1 | 1 | yes |
| P21817-2 | 2 | |
| P21817-3 | 3 |
RefSeq proteins (2): NP_000531, NP_001036188 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000699 | RIH_dom | Domain |
| IPR001870 | B30.2/SPRY | Domain |
| IPR003032 | Ryanodine_rcpt | Domain |
| IPR003877 | SPRY_dom | Domain |
| IPR005821 | Ion_trans_dom | Domain |
| IPR009460 | Ryanrecept_TM4-6 | Domain |
| IPR011992 | EF-hand-dom_pair | Homologous_superfamily |
| IPR013320 | ConA-like_dom_sf | Homologous_superfamily |
| IPR013333 | Ryan_recept | Family |
| IPR013662 | RIH_assoc-dom | Domain |
| IPR014821 | Ins145_P3_rcpt | Domain |
| IPR015925 | Ryanodine_IP3_receptor | Family |
| IPR016093 | MIR_motif | Domain |
| IPR035761 | SPRY1_RyR | Domain |
| IPR035762 | SPRY3_RyR | Domain |
| IPR035764 | SPRY2_RyR | Domain |
| IPR035910 | RyR/IP3R_RIH_dom_sf | Homologous_superfamily |
| IPR036300 | MIR_dom_sf | Homologous_superfamily |
| IPR043136 | B30.2/SPRY_sf | Homologous_superfamily |
| IPR048581 | RYDR_Jsol | Domain |
Pfam: PF00520, PF00622, PF01365, PF02026, PF02815, PF06459, PF08454, PF08709, PF21119
Catalyzed reactions (Rhea), 1 shown:
- Ca(2+)(in) = Ca(2+)(out) (RHEA:29671)
UniProt features (286 total): sequence variant 204, region of interest 11, compositionally biased region 10, domain 9, topological domain 8, modified residue 8, binding site 7, transmembrane region 6, repeat 6, sequence conflict 4, mutagenesis site 3, helix 3, splice variant 2, chain 1, intramembrane region 1, turn 1, strand 1, short sequence motif 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6UHS | X-RAY DIFFRACTION | 2.46 |
| 6UHI | X-RAY DIFFRACTION | 2.88 |
Predicted structure (AlphaFold)
No AlphaFold model available for P21817 — AlphaFold DB does not currently provide models for proteins above ~3000 aa.
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (7): 3892; 3966; 4210–4214; 4717; 4955–4960; 4980–4986; 5002
Post-translational modifications (8): 1337, 2345, 2843, 3635, 4467, 4471, 4864, 4867
Mutagenesis-validated functional residues (3):
| Position | Phenotype |
|---|---|
| 522 | increases calcium-induced calcium release activity. |
| 2508 | increases sensitivity to caffeine and 4-chloro-m-cresol. |
Function
Pathways and Gene Ontology
Reactome pathways
6 pathways
| ID | Pathway |
|---|---|
| R-HSA-2672351 | Stimuli-sensing channels |
| R-HSA-5578775 | Ion homeostasis |
| R-HSA-382551 | Transport of small molecules |
| R-HSA-397014 | Muscle contraction |
| R-HSA-5576891 | Cardiac conduction |
| R-HSA-983712 | Ion channel transport |
MSigDB gene sets: 677 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_COLON_TUMORAL_MACROPHAGE_DN, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_MUSCLE_TISSUE_DEVELOPMENT, GOBP_PROTEIN_HOMOTETRAMERIZATION, GOBP_SKELETAL_SYSTEM_DEVELOPMENT, RORA1_01, MODULE_64, GOBP_STRIATED_MUSCLE_CELL_DIFFERENTIATION, DARWICHE_SKIN_TUMOR_PROMOTER_UP, DARWICHE_PAPILLOMA_RISK_LOW_UP, DARWICHE_PAPILLOMA_RISK_HIGH_UP, DARWICHE_SQUAMOUS_CELL_CARCINOMA_UP, MODULE_329, CAGCTG_AP4_Q5, MORF_RAD51L3
GO Biological Process (21): response to hypoxia (GO:0001666), outflow tract morphogenesis (GO:0003151), calcium ion transport (GO:0006816), muscle contraction (GO:0006936), striated muscle contraction (GO:0006941), release of sequestered calcium ion into cytosol by sarcoplasmic reticulum (GO:0014808), response to caffeine (GO:0031000), skin development (GO:0043588), ossification involved in bone maturation (GO:0043931), skeletal muscle fiber development (GO:0048741), release of sequestered calcium ion into cytosol (GO:0051209), protein homotetramerization (GO:0051289), regulation of cytosolic calcium ion concentration (GO:0051480), cellular response to calcium ion (GO:0071277), cellular response to caffeine (GO:0071313), monoatomic ion transport (GO:0006811), intracellular calcium ion homeostasis (GO:0006874), calcium-mediated signaling (GO:0019722), monoatomic ion transmembrane transport (GO:0034220), transmembrane transport (GO:0055085), calcium ion transmembrane transport (GO:0070588)
GO Molecular Function (12): ryanodine-sensitive calcium-release channel activity (GO:0005219), voltage-gated calcium channel activity (GO:0005245), calcium channel activity (GO:0005262), calcium ion binding (GO:0005509), calmodulin binding (GO:0005516), ATP binding (GO:0005524), intracellularly gated calcium channel activity (GO:0015278), calcium-induced calcium release activity (GO:0048763), nucleotide binding (GO:0000166), monoatomic ion channel activity (GO:0005216), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (16): cytoplasm (GO:0005737), smooth endoplasmic reticulum (GO:0005790), plasma membrane (GO:0005886), cell cortex (GO:0005938), junctional sarcoplasmic reticulum membrane (GO:0014701), terminal cisterna (GO:0014802), sarcoplasmic reticulum (GO:0016529), Z disc (GO:0030018), organelle membrane (GO:0031090), I band (GO:0031674), sarcoplasmic reticulum membrane (GO:0033017), calcium channel complex (GO:0034704), sarcolemma (GO:0042383), extracellular exosome (GO:0070062), ryanodine receptor complex (GO:1990425), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-4 pathways:
| Category | Pathways |
|---|---|
| Ion channel transport | 1 |
| Cardiac conduction | 1 |
| Muscle contraction | 1 |
| Transport of small molecules | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| transport | 2 |
| endoplasmic reticulum | 2 |
| membrane | 2 |
| cell periphery | 2 |
| sarcoplasmic reticulum membrane | 2 |
| sarcoplasmic reticulum | 2 |
| response to stress | 1 |
| response to decreased oxygen levels | 1 |
| heart morphogenesis | 1 |
| anatomical structure morphogenesis | 1 |
| metal ion transport | 1 |
| muscle system process | 1 |
| muscle contraction | 1 |
| sarcoplasmic reticulum calcium ion transport | 1 |
| release of sequestered calcium ion into cytosol by endoplasmic reticulum | 1 |
| response to purine-containing compound | 1 |
| response to alkaloid | 1 |
| animal organ development | 1 |
| ossification | 1 |
| bone maturation | 1 |
| skeletal muscle tissue development | 1 |
| myotube cell development | 1 |
| intercellular transport | 1 |
| calcium ion transmembrane import into cytosol | 1 |
| protein homooligomerization | 1 |
| protein tetramerization | 1 |
| intracellular calcium ion homeostasis | 1 |
| response to calcium ion | 1 |
| cellular response to metal ion | 1 |
| response to caffeine | 1 |
| cellular response to alkaloid | 1 |
| cellular response to purine-containing compound | 1 |
| intracellular monoatomic cation homeostasis | 1 |
| calcium ion homeostasis | 1 |
| intracellular signaling cassette | 1 |
| monoatomic ion transport | 1 |
| transmembrane transport | 1 |
| cellular process | 1 |
| calcium-induced calcium release activity | 1 |
Protein interactions and networks
STRING
2104 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RYR1 | FKBP1A | P20071 | 997 |
| RYR1 | CALML3 | P27482 | 990 |
| RYR1 | CALML5 | Q9NZT1 | 990 |
| RYR1 | CALML6 | Q8TD86 | 989 |
| RYR1 | CALML4 | Q96GE6 | 989 |
| RYR1 | QDPR | P09417 | 986 |
| RYR1 | CACNA1S | Q13698 | 986 |
| RYR1 | FKBP1B | P68106 | 981 |
| RYR1 | CALM1 | P02593 | 979 |
| RYR1 | TRDN | Q13061 | 950 |
| RYR1 | JPH1 | Q9HDC5 | 944 |
| RYR1 | ATP2A1 | O14983 | 928 |
| RYR1 | STAC3 | Q96MF2 | 854 |
| RYR1 | SELENON | Q9NZV5 | 847 |
| RYR1 | MTM1 | Q13496 | 842 |
IntAct
21 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| RACK1 | RIOK3 | psi-mi:“MI:0914”(association) | 0.640 |
| RYR1 | MYOM2 | psi-mi:“MI:2364”(proximity) | 0.450 |
| TERF1 | RYR1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| RYR1 | PPP1CA | psi-mi:“MI:0203”(dephosphorylation reaction) | 0.440 |
| PPP2CA | RYR1 | psi-mi:“MI:0203”(dephosphorylation reaction) | 0.440 |
| GRB2 | RYR1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| NCK1 | RYR1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| RYR1 | PLCG1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| TF | IGKV2D-40 | psi-mi:“MI:0914”(association) | 0.350 |
| RYR1 | FKBP1A | psi-mi:“MI:0914”(association) | 0.350 |
| METTL3 | TUBAL3 | psi-mi:“MI:0914”(association) | 0.350 |
| M | psi-mi:“MI:0914”(association) | 0.350 | |
| DYRK1A | TEX13D | psi-mi:“MI:0914”(association) | 0.350 |
| ATG16L1 | psi-mi:“MI:0914”(association) | 0.350 | |
| MRPS23 | MYH7B | psi-mi:“MI:0914”(association) | 0.350 |
| SLC27A6 | NBAS | psi-mi:“MI:0914”(association) | 0.350 |
| MYOM2 | RYR1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| PDLIM3 | RYR1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| RYR1 | TTN | psi-mi:“MI:0915”(physical association) | 0.000 |
| RYR1 | TULP3 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (52): ANK1 (Reconstituted Complex), CALM1 (Far Western), RYR1 (FRET), RYR1 (Affinity Capture-MS), RYR1 (Affinity Capture-MS), TRDN (Reconstituted Complex), RYR1 (Proximity Label-MS), RYR1 (Reconstituted Complex), RYR1 (Reconstituted Complex), CALM1 (Reconstituted Complex), AKAP6 (Reconstituted Complex), RYR2 (Reconstituted Complex), RYR2 (Co-purification), RYR1 (Reconstituted Complex), RYR1 (Affinity Capture-MS)
ESM2 similar proteins: A2AGL3, B0LPN4, E9PZQ0, E9Q401, F1LMY4, F1Q8X5, P0C7A6, P11716, P11881, P16960, P21817, P29994, P29995, P30957, P42694, P48553, Q0VEJ0, Q14571, Q14643, Q15413, Q1LVW0, Q24498, Q28C34, Q3TLI0, Q5F361, Q5RCP7, Q6NRC7, Q6NRD0, Q6NYU2, Q6QI06, Q6R327, Q7SXV1, Q7Z3V4, Q7ZUV0, Q7ZYD9, Q80UK0, Q86VW0, Q8BHL5, Q8BIK4, Q8BWW9
Diamond homologs: A0A5F9C6I2, A1L252, A2VD92, B0LPN4, D3ZXK7, E9PZQ0, E9Q401, F1LMY4, O94712, P11716, P16960, P21817, P30957, P69566, Q15413, Q19614, Q1LUS8, Q28FM1, Q5R881, Q5XH91, Q5XPI3, Q5XPI4, Q6VN19, Q8BVR6, Q90WU3, Q92736, Q95LP3, Q96DX4, Q96S59, Q9PTY5, Q9VNV3, A2AGL3, P11881, P29993, P29994, P29995, P70227, Q14571, Q14573, Q14643
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| PRKG1 | unknown | RYR1 | phosphorylation |
| PRKACA | “up-regulates activity” | RYR1 | phosphorylation |
| CAMK2G | unknown | RYR1 | phosphorylation |
Disease & clinical
Clinical variants and AI predictions
ClinVar
10759 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 340 |
| Likely pathogenic | 334 |
| Uncertain significance | 4774 |
| Likely benign | 3979 |
| Benign | 310 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1066439 | NM_000540.3(RYR1):c.14582G>C (p.Arg4861Pro) | Pathogenic |
| 1067471 | NM_000540.3(RYR1):c.13994T>C (p.Leu4665Pro) | Pathogenic |
| 1069457 | NM_000540.3(RYR1):c.10619dup (p.Tyr3540Ter) | Pathogenic |
| 1069514 | NM_000540.3(RYR1):c.8773G>T (p.Glu2925Ter) | Pathogenic |
| 1069774 | NM_000540.3(RYR1):c.1381G>T (p.Glu461Ter) | Pathogenic |
| 1071320 | NM_000540.3(RYR1):c.13416del (p.Ile4473fs) | Pathogenic |
| 1073108 | NM_000540.3(RYR1):c.10471C>T (p.Gln3491Ter) | Pathogenic |
| 1075282 | NM_000540.3(RYR1):c.5917C>T (p.Gln1973Ter) | Pathogenic |
| 1075694 | NM_000540.3(RYR1):c.2005G>T (p.Glu669Ter) | Pathogenic |
| 1076444 | NM_000540.3(RYR1):c.12022C>T (p.Gln4008Ter) | Pathogenic |
| 1180626 | NM_000540.3(RYR1):c.9851G>A (p.Trp3284Ter) | Pathogenic |
| 1217048 | NM_000540.3(RYR1):c.6082C>T (p.Arg2028Ter) | Pathogenic |
| 1253809 | NM_000540.3(RYR1):c.8310+1G>T | Pathogenic |
| 12969 | NM_000540.3(RYR1):c.1021G>A (p.Gly341Arg) | Pathogenic |
| 12977 | NM_000540.3(RYR1):c.6617C>T (p.Thr2206Met) | Pathogenic |
| 12981 | NM_000540.3(RYR1):c.12640_12648del (p.Arg4214_Phe4216del) | Pathogenic |
| 12983 | NM_000540.3(RYR1):c.10579C>T (p.Pro3527Ser) | Pathogenic |
| 12986 | NM_000540.3(RYR1):c.14587_14607del (p.Phe4863_Asp4869del) | Pathogenic |
| 12987 | NM_000540.2(RYR1):c.14647-1449A>G | Pathogenic |
| 12990 | NM_000540.3(RYR1):c.14365-2A>T | Pathogenic |
| 12996 | NM_000540.3(RYR1):c.13013_13032del (p.Ala4338fs) | Pathogenic |
| 1323545 | NM_000540.3(RYR1):c.10063C>T (p.Gln3355Ter) | Pathogenic |
| 132992 | NM_000540.3(RYR1):c.1021G>C (p.Gly341Arg) | Pathogenic |
| 132994 | NM_000540.3(RYR1):c.10348-6C>G | Pathogenic |
| 133030 | NM_000540.3(RYR1):c.1202G>A (p.Arg401His) | Pathogenic |
| 1330358 | NM_000540.3(RYR1):c.7879G>C (p.Val2627Leu) | Pathogenic |
| 133040 | NM_000540.3(RYR1):c.12700G>C (p.Val4234Leu) | Pathogenic |
| 133061 | NM_000540.3(RYR1):c.14210G>A (p.Arg4737Gln) | Pathogenic |
| 133081 | NM_000540.3(RYR1):c.14627A>G (p.Lys4876Arg) | Pathogenic |
| 133116 | NM_000540.3(RYR1):c.2455C>T (p.Arg819Ter) | Pathogenic |
SpliceAI
13685 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:38433870:GGACG:G | donor_gain | 1.0000 |
| 19:38433871:GACG:G | donor_gain | 1.0000 |
| 19:38433871:GACGG:G | donor_gain | 1.0000 |
| 19:38433873:CGGT:C | donor_loss | 1.0000 |
| 19:38433875:G:GG | donor_gain | 1.0000 |
| 19:38440862:CAGG:C | donor_loss | 1.0000 |
| 19:38440864:GGT:G | donor_loss | 1.0000 |
| 19:38442343:C:G | acceptor_gain | 1.0000 |
| 19:38442344:CCCA:C | acceptor_loss | 1.0000 |
| 19:38442346:CA:C | acceptor_loss | 1.0000 |
| 19:38442347:A:AG | acceptor_gain | 1.0000 |
| 19:38442347:AGAAT:A | acceptor_gain | 1.0000 |
| 19:38442348:G:GG | acceptor_gain | 1.0000 |
| 19:38442348:GA:G | acceptor_gain | 1.0000 |
| 19:38442348:GAA:G | acceptor_gain | 1.0000 |
| 19:38442348:GAAT:G | acceptor_gain | 1.0000 |
| 19:38442348:GAATG:G | acceptor_gain | 1.0000 |
| 19:38442453:GGTG:G | donor_loss | 1.0000 |
| 19:38442454:G:GA | donor_loss | 1.0000 |
| 19:38442454:G:GG | donor_gain | 1.0000 |
| 19:38443553:T:A | acceptor_gain | 1.0000 |
| 19:38443554:GCA:G | acceptor_loss | 1.0000 |
| 19:38443555:CAGTC:C | acceptor_loss | 1.0000 |
| 19:38443556:A:AG | acceptor_gain | 1.0000 |
| 19:38443557:G:GA | acceptor_gain | 1.0000 |
| 19:38443557:GT:G | acceptor_gain | 1.0000 |
| 19:38443557:GTC:G | acceptor_gain | 1.0000 |
| 19:38443557:GTCA:G | acceptor_gain | 1.0000 |
| 19:38443557:GTCAT:G | acceptor_gain | 1.0000 |
| 19:38443628:GCATG:G | donor_gain | 1.0000 |
AlphaMissense
33106 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 19:38444163:T:A | W147R | 1.000 |
| 19:38444163:T:C | W147R | 1.000 |
| 19:38455639:T:C | L560P | 1.000 |
| 19:38455660:T:A | L567H | 1.000 |
| 19:38455660:T:C | L567P | 1.000 |
| 19:38463477:C:G | H878D | 1.000 |
| 19:38463486:T:A | W881R | 1.000 |
| 19:38463486:T:C | W881R | 1.000 |
| 19:38463488:G:C | W881C | 1.000 |
| 19:38463488:G:T | W881C | 1.000 |
| 19:38463513:T:A | W890R | 1.000 |
| 19:38463513:T:C | W890R | 1.000 |
| 19:38463781:T:A | L906H | 1.000 |
| 19:38466180:T:C | L987P | 1.000 |
| 19:38466203:T:A | W995R | 1.000 |
| 19:38466203:T:C | W995R | 1.000 |
| 19:38466205:G:C | W995C | 1.000 |
| 19:38466205:G:T | W995C | 1.000 |
| 19:38444238:A:C | S172R | 0.999 |
| 19:38444240:T:A | S172R | 0.999 |
| 19:38444240:T:G | S172R | 0.999 |
| 19:38444254:G:C | R177P | 0.999 |
| 19:38444260:T:C | L179P | 0.999 |
| 19:38444626:T:C | F194L | 0.999 |
| 19:38444628:C:A | F194L | 0.999 |
| 19:38444628:C:G | F194L | 0.999 |
| 19:38444641:T:A | W199R | 0.999 |
| 19:38444641:T:C | W199R | 0.999 |
| 19:38446743:T:A | W259R | 0.999 |
| 19:38446743:T:C | W259R | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000029460 (19:38559825 T>G), RS1000041311 (19:38473070 G>T), RS1000077416 (19:38472862 T>G), RS1000096881 (19:38551780 C>G,T), RS1000162602 (19:38553524 C>G), RS1000163680 (19:38496139 A>C,G), RS1000169746 (19:38462190 C>T), RS1000171518 (19:38579563 C>T), RS1000194385 (19:38536391 A>G,T), RS1000214638 (19:38553180 C>G,T), RS1000217702 (19:38575537 G>A), RS1000296504 (19:38583965 C>T), RS1000313045 (19:38575709 A>G), RS1000339606 (19:38490523 C>T), RS1000345626 (19:38508886 T>C)
Disease associations
OMIM: gene MIM:180901 | disease phenotypes: MIM:145600, MIM:117000, MIM:255320, MIM:619542, MIM:160150, MIM:119800, MIM:615834, MIM:269400, MIM:617468, MIM:208150, MIM:160500, MIM:166710, MIM:601462, MIM:610542, MIM:108120, MIM:614408, MIM:614350
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| malignant hyperthermia, susceptibility to, 1 | Definitive | Autosomal dominant |
| RYR1-related myopathy | Definitive | Autosomal dominant |
| congenital multicore myopathy with external ophthalmoplegia | Definitive | Autosomal recessive |
| central core myopathy | Strong | Autosomal dominant |
| autosomal recessive centronuclear myopathy | Supportive | Autosomal recessive |
| benign Samaritan congenital myopathy | Supportive | Autosomal recessive |
| lethal multiple pterygium syndrome | Supportive | Autosomal recessive |
| malignant hyperthermia of anesthesia | Supportive | Autosomal dominant |
| congenital myopathy with myasthenic-like onset | Supportive | Autosomal recessive |
| King-Denborough syndrome | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (3)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| malignant hyperthermia, susceptibility to, 1 | Definitive | AD |
| RYR1-related myopathy | Definitive | AR |
| RYR1-related myopathy | Definitive | AD |
Mondo (42): malignant hyperthermia, susceptibility to, 1 (MONDO:0007783), RYR1-related myopathy (MONDO:0100150), central core myopathy (MONDO:0007294), congenital fiber-type disproportion myopathy (MONDO:0009711), congenital multicore myopathy with external ophthalmoplegia (MONDO:0009712), King-Denborough syndrome (MONDO:0020485), malignant hyperthermia of anesthesia (MONDO:0018493), multiminicore myopathy (MONDO:0018948), congenital myopathy (MONDO:0019952), centronuclear myopathy (MONDO:0018947), ptosis (MONDO:0000728), malignant hyperthermia, susceptibility to (MONDO:0800188), clubfoot (MONDO:0007342), neuromuscular disease (MONDO:0019056), scoliosis (MONDO:0005392)
Orphanet (27): Malignant hyperthermia of anesthesia (Orphanet:423), Neurological muscular channelopathy due to a genetic ryanodine receptor defect (Orphanet:98742), Congenital fiber-type disproportion myopathy (Orphanet:2020), Central core disease (Orphanet:597), Multiminicore myopathy (Orphanet:598), Congenital multicore myopathy with external ophthalmoplegia (Orphanet:98905), Congenital myopathy (Orphanet:97245), Centronuclear myopathy (Orphanet:595), Familial clubfoot with or without associated lower limb anomalies (Orphanet:199315), Neuromuscular disease (Orphanet:68381), Congenital myopathy with cores (Orphanet:172976), Autism spectrum disorder due to AUTS2 deficiency (Orphanet:352490), Congenital cataract microcornea with corneal opacity (Orphanet:289499), Hydrops fetalis (Orphanet:1041), Arthrogryposis multiplex congenita (Orphanet:1037)
HPO phenotypes
223 total (30 of 223 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000020 | Urinary incontinence |
| HP:0000028 | Cryptorchidism |
| HP:0000046 | Small scrotum |
| HP:0000054 | Micropenis |
| HP:0000160 | Narrow mouth |
| HP:0000193 | Bifid uvula |
| HP:0000218 | High palate |
| HP:0000268 | Dolichocephaly |
| HP:0000275 | Narrow face |
| HP:0000276 | Long face |
| HP:0000278 | Retrognathia |
| HP:0000286 | Epicanthus |
| HP:0000316 | Hypertelorism |
| HP:0000341 | Narrow forehead |
| HP:0000369 | Low-set ears |
| HP:0000411 | Protruding ear |
| HP:0000431 | Wide nasal bridge |
| HP:0000455 | Broad nasal tip |
| HP:0000465 | Webbed neck |
| HP:0000470 | Short neck |
| HP:0000494 | Downslanted palpebral fissures |
| HP:0000508 | Ptosis |
| HP:0000544 | External ophthalmoplegia |
| HP:0000597 | Ophthalmoparesis |
| HP:0000602 | Ophthalmoplegia |
| HP:0000707 | Abnormality of the nervous system |
| HP:0000750 | Delayed speech and language development |
| HP:0000883 | Thin ribs |
GWAS associations
8 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002875_93 | Diisocyanate-induced asthma | 5.000000e-06 |
| GCST004618_49 | White blood cell count (basophil) | 4.000000e-22 |
| GCST004631_6 | Basophil percentage of white cells | 2.000000e-18 |
| GCST004634_53 | Basophil percentage of granulocytes | 3.000000e-16 |
| GCST005727_3 | Peanut allergy (parent-of-origin effect) | 2.000000e-06 |
| GCST009303_17 | Abstraction and mental flexibility | 6.000000e-06 |
| GCST90000025_566 | Appendicular lean mass | 4.000000e-09 |
| GCST90000027_45 | Appendicular lean mass | 6.000000e-06 |
EFO canonical traits (8, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0006995 | response to diisocyanate |
| EFO:0005090 | basophil count |
| EFO:0007992 | basophil percentage of leukocytes |
| EFO:0007995 | basophil percentage of granulocytes |
| EFO:0005939 | parental genotype effect measurement |
| EFO:0007017 | peanut allergy measurement |
| EFO:0009332 | executive function measurement |
| EFO:0004980 | appendicular lean mass |
MeSH disease descriptors (19)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D019571 | Arrhythmogenic Right Ventricular Dysplasia | C14.240.400.145; C14.280.238.028; C14.280.400.145; C16.131.240.400.145 |
| D001763 | Blepharoptosis | C11.338.204 |
| D003025 | Clubfoot | C05.330.488.655.063; C05.330.495.681.063; C05.660.585.512.380.813.063; C16.131.621.585.512.500.681.063 |
| D004827 | Epilepsy | C10.228.140.490 |
| D015160 | Hydrops Fetalis | C12.050.703.277.060.480; C15.378.295.480; C15.378.420.826.100.350; C16.300.060.480; C16.320.365.826.100.350; C20.306.480; C23.888.277.395 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D008133 | Long QT Syndrome | C14.280.067.565; C14.280.123.625; C16.131.240.400.715; C23.550.073.547 |
| D008305 | Malignant Hyperthermia | C23.550.505.700; C23.550.767.600; C23.888.119.455.500 |
| D009135 | Muscular Diseases | C05.651; C10.668.491 |
| D049288 | Muscular Dystrophies, Limb-Girdle | C05.651.534.500.280; C10.668.491.175.500.149; C16.320.577.280 |
| D020294 | Myasthenic Syndromes, Congenital | C10.668.758.800; C16.320.590 |
| D020512 | Myopathy, Central Core | C05.651.575.300; C10.668.491.550.300 |
| D009468 | Neuromuscular Diseases | C10.668 |
| D010024 | Osteoporosis | C05.116.198.579; C18.452.104.579 |
| D012600 | Scoliosis | C05.116.900.800.875 |
| C563456 | Colorectal Cancer, Hereditary Nonpolyposis, Type 5 (supp.) | |
| C536883 | King Denborough syndrome (supp.) | |
| C537504 | Kousseff Nichols syndrome (supp.) | |
| C535694 | Malignant hyperthermia susceptibility type 1 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL1846 (SINGLE PROTEIN), CHEMBL4106135 (PROTEIN COMPLEX)
PharmGKB: 1 entry (VIP=true, CPIC=true)
PharmGKB clinical annotations
48 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs111888148 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs112563513 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs118192116 | Toxicity | 3 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs118192122 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs118192124 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs118192161 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs118192162 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs118192163 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs118192167 | Toxicity | 3 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs118192168 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs118192170 | Toxicity | 3 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs118192172 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs118192172 | Toxicity | 3 | HMG-CoA reductase inhibitors | Muscular Diseases |
| rs118192175 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs118192176 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs118192177 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs118192178 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs118192178 | Toxicity | 3 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs118204423 | Toxicity | 3 | succinylcholine;volatile anesthetics | Malignant Hyperthermia |
| rs121918592 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs121918593 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs121918594 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs121918595 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs121918596 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs144336148 | Toxicity | 3 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs1801086 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs186983396 | Other | 3 | caffeine;chlorocresol | Malignant Hyperthermia |
| rs193922747 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs193922748 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs193922753 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs193922762 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs193922764 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs193922768 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs193922770 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs193922772 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs193922802 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs193922803 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs193922807 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs193922809 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
| rs193922816 | Toxicity | 1A | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Malignant Hyperthermia |
PharmGKB variants
74 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs1801086 | RYR1 | 1A | 101.25 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs28933396 | RYR1 | 1A | 102.25 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs28933397 | RYR1 | 1A | 102.75 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs63749869 | RYR1 | 3 | 0.25 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs111888148 | RYR1 | 1A | 100.25 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs112563513 | RYR1 | 1A | 102.25 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs118192116 | RYR1 | 3 | 0.00 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs118192122 | RYR1 | 1A | 103.00 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs118192123 | RYR1 | 0.00 | 0 | ||
| rs118192124 | RYR1 | 1A | 100.50 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs118192161 | RYR1 | 1A | 107.00 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs118192162 | RYR1 | 1A | 102.50 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs118192163 | RYR1 | 1A | 101.50 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs118192167 | RYR1 | 3 | 0.00 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs118192170 | RYR1 | 3 | 0.25 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs118192172 | RYR1 | 1A | 106.75 | 2 | HMG-CoA reductase inhibitors;desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs118192175 | RYR1 | 1A | 100.00 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs118192176 | RYR1 | 1A | 103.75 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs118192177 | RYR1 | 1A | 103.25 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs118192178 | RYR1 | 1A | 101.50 | 2 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs118204423 | RYR1 | 3 | 0.25 | 1 | succinylcholine;volatile anesthetics |
| rs121918592 | RYR1 | 1A | 104.75 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs121918593 | RYR1 | 1A | 105.50 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs121918594 | RYR1 | 1A | 101.25 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs121918595 | RYR1 | 1A | 100.75 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs142474192 | RYR1 | 0.00 | 0 | ||
| rs146429605 | RYR1 | 0.00 | 0 | ||
| rs147136339 | RYR1 | 0.00 | 0 | ||
| rs147213895 | RYR1 | 0.00 | 0 | ||
| rs148399313 | RYR1 | 0.00 | 0 | ||
| rs193922747 | RYR1 | 1A | 100.75 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs193922753 | RYR1 | 1A | 100.75 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs193922767 | RYR1 | 0.00 | 0 | ||
| rs193922770 | RYR1 | 1A | 101.00 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs193922772 | RYR1 | 1A | 102.50 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs193922802 | RYR1 | 1A | 101.00 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs193922803 | RYR1 | 1A | 100.25 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs193922807 | RYR1 | 1A | 100.00 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs193922809 | RYR1 | 1A | 100.25 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
| rs193922816 | RYR1 | 1A | 103.00 | 1 | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine |
PharmGKB dosing guidelines
1 guidelines.
| Source | Drug | Guideline | Dosing? | Recommendation? |
|---|---|---|---|---|
| CPIC | desflurane;enflurane;halothane;isoflurane;methoxyflurane;sevoflurane;succinylcholine | Annotation of CPIC Guideline for desflurane, enflurane, halothane, isoflurane, methoxyflurane, sevoflurane, succinylcholine and CACNA1S, RYR1 | yes |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: vgic — Ryanodine receptors (RyR)
Binding affinities (BindingDB)
1 measured of 1 human assays (1 total across all organisms); most potent 1 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| Ryanodine Derivative | IC50 | 3.3 nM |
ChEMBL bioactivities
10 potent at pChembl≥5 of 19 total, top 9 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 8.74 | Ki | 1.8 | nM | CHEMBL308183 |
| 8.48 | IC50 | 3.3 | nM | CHEMBL308183 |
| 8.46 | IC50 | 3.5 | nM | CHEMBL308183 |
| 5.66 | EC50 | 2200 | nM | BASTADIN 5 |
| 5.58 | EC50 | 2600 | nM | CHEMBL505907 |
| 5.24 | EC50 | 5800 | nM | CHEMBL504851 |
| 5.22 | IC50 | 6000 | nM | CHEMBL213853 |
| 5.20 | EC50 | 6300 | nM | BASTADIN 7 |
| 5.19 | EC50 | 6500 | nM | CHEMBL377812 |
PubChem BioAssay actives
10 with measured affinity, of 91 total; 7 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (2,6,9,11,13,14-hexahydroxy-3,7,10-trimethyl-11-propan-2-yl-15-oxapentacyclo[7.5.1.01,6.07,13.010,14]pentadecan-12-yl) 1H-pyrrole-2-carboxylate | 198781: Binding to ryanodine receptor in canine cardiac membranes. | ki | 0.0018 | uM |
| (12Z,25Z)-5,16,21,32,36-pentabromo-4,20-dihydroxy-12,25-bis(hydroxyimino)-2,18-dioxa-10,27-diazapentacyclo[28.2.2.214,17.13,7.119,23]octatriaconta-1(32),3,5,7(38),14,16,19,21,23(35),30,33,36-dodecaene-11,26-dione | 266719: Agonist like activity at skeletal junction sarcoplasmic reticulum RyR1/FKBP12 complex assessed as increase in [3H]ryanodine binding | ec50 | 2.2000 | uM |
| (12Z,25Z)-5,16,21,32,33,36-hexabromo-4,20-dihydroxy-12,25-bis(hydroxyimino)-2,18-dioxa-10,27-diazapentacyclo[28.2.2.214,17.13,7.119,23]octatriaconta-1(32),3,5,7(38),14,16,19,21,23(35),30,33,36-dodecaene-11,26-dione | 334201: Displacement of [3H]ryanodine from RyR1 calcium channel in sarcoplasmic reticulum assessed as calcium mobilization | ec50 | 2.6000 | uM |
| (12Z,25E,29S)-5,16,21,32-tetrabromo-4,20,29-trihydroxy-12,25-bis(hydroxyimino)-2,18-dioxa-10,27-diazapentacyclo[28.2.2.214,17.13,7.119,23]octatriaconta-1(32),3,5,7(38),14,16,19,21,23(35),30,33,36-dodecaene-11,26-dione | 334201: Displacement of [3H]ryanodine from RyR1 calcium channel in sarcoplasmic reticulum assessed as calcium mobilization | ec50 | 5.8000 | uM |
| 5,20-dibromo-4-hydroxy-2-oxa-10,14-diazatricyclo[16.2.2.13,7]tricosa-1(20),3,5,7(23),18,21-hexaene-11,15-dione | 349210: Binding affinity to RYR1 channels by calcium mobilization assay | ic50 | 6.0000 | uM |
| (12E,25E,28E)-5,16,21,32-tetrabromo-4,20-dihydroxy-12,25-bis(hydroxyimino)-2,18-dioxa-10,27-diazapentacyclo[28.2.2.214,17.13,7.119,23]octatriaconta-1(32),3,5,7(38),14,16,19,21,23(35),28,30,33,36-tridecaene-11,26-dione | 349210: Binding affinity to RYR1 channels by calcium mobilization assay | ec50 | 6.3000 | uM |
| 2-azido-5-iodo-N-[4-[(13S)-5,19,21-tribromo-4-hydroxy-11,15-dioxo-2-oxa-10,14-diazatricyclo[16.2.2.13,7]tricosa-1(21),3,5,7(23),18(22),19-hexaen-13-yl]butyl]benzamide | 266719: Agonist like activity at skeletal junction sarcoplasmic reticulum RyR1/FKBP12 complex assessed as increase in [3H]ryanodine binding | ec50 | 6.5000 | uM |
CTD chemical–gene interactions
49 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| chlorocresol | increases activity, increases expression, affects localization, increases transport, affects reaction (+4 more) | 8 |
| Calcium | increases activity, affects folding, affects activity, affects reaction, decreases reaction (+8 more) | 7 |
| Caffeine | increases activity, affects localization, increases response to substance, affects reaction, increases secretion | 6 |
| sodium arsenite | decreases expression, increases expression, increases reaction | 4 |
| Halothane | increases activity, affects localization, increases response to substance | 3 |
| Benzo(a)pyrene | affects methylation | 2 |
| Triclosan | affects binding, increases reaction, decreases expression | 2 |
| sotorasib | affects cotreatment, decreases expression | 1 |
| 2,4,6-tribromophenol | decreases expression | 1 |
| bisphenol A | decreases expression | 1 |
| sodium arsenate | decreases expression, increases abundance | 1 |
| 2,3,6,2’,3’,6’-hexachlorobiphenyl | affects cotreatment, affects response to substance | 1 |
| decabromobiphenyl ether | decreases expression | 1 |
| 11-nor-delta(9)-tetrahydrocannabinol-9-carboxylic acid | affects methylation, increases abundance | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| aflatoxin B2 | decreases methylation | 1 |
| oxymatrine | increases expression, increases reaction | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| ICG 001 | increases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 1 |
| hexabrominated diphenyl ether 153 | decreases expression | 1 |
| bisphenol S | decreases methylation | 1 |
| incobotulinumtoxinA | decreases expression | 1 |
| trametinib | decreases expression, affects cotreatment | 1 |
| NVP-BKM120 | affects cotreatment, decreases expression | 1 |
| excavatolide B | increases expression | 1 |
| Decitabine | decreases expression, decreases reaction | 1 |
| Vorinostat | decreases expression | 1 |
| Antimony Potassium Tartrate | decreases expression | 1 |
| Arsenic | decreases expression, increases abundance | 1 |
ChEMBL screening assays
16 unique, capped per target: 13 binding, 3 functional
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1006192 | Binding | Binding affinity to RYR1 channels by calcium mobilization assay | Open-chain half-bastadins mimic the effects of cyclic bastadins on calcium homeostasis in cultured neurons. — Bioorg Med Chem Lett |
| CHEMBL802320 | Functional | Potency compared to [3H]ryanodine for activity in canine ventricle. | Ryanodine action at calcium release channels. 1. importance of hydroxyl substituents. — J Med Chem |
Cellosaurus cell lines
36 cell lines: 20 transformed cell line, 9 induced pluripotent stem cell, 5 cancer cell line, 2 finite cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A2VI | GM26117 | Transformed cell line | Female |
| CVCL_A2VL | GM26130 | Transformed cell line | Male |
| CVCL_A2VP | GM26135 | Transformed cell line | Female |
| CVCL_A2VQ | GM26136 | Transformed cell line | Female |
| CVCL_A2VR | GM26137 | Transformed cell line | Female |
| CVCL_A2VS | GM26147 | Transformed cell line | Female |
| CVCL_A2VT | GM26153 | Transformed cell line | Female |
| CVCL_A2VV | GM26155 | Transformed cell line | Female |
| CVCL_A2WF | GM26186 | Transformed cell line | Female |
| CVCL_A2WG | GM26199 | Transformed cell line | Female |
Clinical trials (associated diseases)
297 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00793988 | PHASE4 | COMPLETED | Vibration-Assisted Anaesthesia |
| NCT01239498 | PHASE4 | UNKNOWN | Saline Injection - Assisted Anesthesia in Eyelid Surgery |
| NCT02761083 | PHASE4 | WITHDRAWN | PMCF-study Using Novosyn® Quick Suture Material in Ophthalmic Surgery |
| NCT04007276 | PHASE4 | NOT_YET_RECRUITING | The Effect of Lumify™ on Ocular Redness, Intraocular Pressure, and Eyelid Position in Glaucoma Patients |
| NCT07390578 | PHASE4 | NOT_YET_RECRUITING | Upneeq vs. Lumify Ptosis |
| NCT04564430 | PHASE4 | UNKNOWN | Clonidine for Tourniquet-related Pain in Children |
| NCT04766684 | PHASE4 | COMPLETED | Clubfoot Tenotomy Trial |
| NCT00331656 | PHASE4 | UNKNOWN | Comparative Study of Non-Invasive Mask Ventilation vs Cuirass Ventilation in Patients With Acute Respiratory Failure. |
| NCT00994552 | PHASE4 | UNKNOWN | Comparison of Pressure Support and Pressure Control Ventilation in Chronic Respiratory Failure |
| NCT02436759 | PHASE3 | COMPLETED | Study of the Safety and Efficacy of RVL-1201 in the Treatment of Acquired Blepharoptosis |
| NCT03536949 | PHASE3 | COMPLETED | Study of Safety of RVL-1201 in Treatment of Blepharoptosis |
| NCT03565887 | PHASE3 | COMPLETED | Study of Safety and Efficacy of RVL-1201 in the Treatment of Blepharoptosis |
| NCT05945615 | PHASE3 | COMPLETED | Oxymetazoline Drops for Acquired Blepharoptosis From Synkinesis |
| NCT06683651 | PHASE3 | RECRUITING | A Study in Chinese Patients With Acquired Blepharoptosis |
| NCT00839033 | PHASE3 | TERMINATED | Evaluation of a Mechanical Device During Acute Respiratory Failure in Patients With Neuromuscular Disorders |
| NCT00942227 | PHASE3 | COMPLETED | The Value of Traction in Treatment of Lumbar Radiculopathy |
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Related Atlas pages
- Associated diseases: malignant hyperthermia, susceptibility to, 1, RYR1-related myopathy, central core myopathy, congenital multicore myopathy with external ophthalmoplegia, autosomal recessive centronuclear myopathy, benign Samaritan congenital myopathy, lethal multiple pterygium syndrome, malignant hyperthermia of anesthesia, congenital myopathy with myasthenic-like onset, King-Denborough syndrome
- Targeted by drugs: Caffeine, Calcium, Dantrolene, Magnesium, Procaine, Suramin, Triphosphate
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): anterior segment dysgenesis 7, arrhythmogenic right ventricular cardiomyopathy, arthrogryposis multiplex congenita, asthma, autism spectrum disorder due to AUTS2 deficiency, autosomal dominant centronuclear myopathy, autosomal recessive centronuclear myopathy, benign Samaritan congenital myopathy, central core myopathy, centronuclear myopathy, clubfoot, congenital contractures, congenital fiber-type disproportion myopathy, congenital multicore myopathy with external ophthalmoplegia, congenital muscular dystrophy, congenital myasthenic syndrome, congenital myasthenic syndrome 12, congenital myopathy, congenital myopathy with myasthenic-like onset, distal arthrogryposis, distal myopathy, epilepsy, fetal akinesia deformation sequence 1, hereditary skeletal muscle disorder, hydrops fetalis, King-Denborough syndrome, lethal multiple pterygium syndrome, limb-girdle muscular dystrophy, long QT syndrome, Lynch syndrome 5, malignant hyperthermia of anesthesia, malignant hyperthermia, susceptibility to, malignant hyperthermia, susceptibility to, 1, multiminicore myopathy, muscle tissue disorder, myopathy, neuromuscular disease, osteoporosis, ptosis, rhabdomyolysis-myalgia syndrome, RYR1-related myopathy, scoliosis