S100A14

gene
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Also known as S100A15BCMP84

Summary

S100A14 (S100 calcium binding protein A14, HGNC:18901) is a protein-coding gene on chromosome 1q21.3, encoding Protein S100-A14 (Q9HCY8). Modulates P53/TP53 protein levels, and thereby plays a role in the regulation of cell survival and apoptosis.

This gene encodes a member of the S100 protein family which contains an EF-hand motif and binds calcium. The gene is located in a cluster of S100 genes on chromosome 1. Levels of the encoded protein have been found to be lower in cancerous tissue and associated with metastasis suggesting a tumor suppressor function (PMID: 19956863, 19351828).

Source: NCBI Gene 57402 — RefSeq curated summary.

At a glance

  • Clinical variants (ClinVar): 25 total
  • MANE Select transcript: NM_020672

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:18901
Approved symbolS100A14
NameS100 calcium binding protein A14
Location1q21.3
Locus typegene with protein product
StatusApproved
AliasesS100A15, BCMP84
Ensembl geneENSG00000189334
Ensembl biotypeprotein_coding
OMIM607986
Entrez57402

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 6 protein_coding, 2 protein_coding_CDS_not_defined

ENST00000344616, ENST00000368700, ENST00000368701, ENST00000368702, ENST00000469571, ENST00000476873, ENST00000859573, ENST00000946612

RefSeq mRNA: 1 — MANE Select: NM_020672 NM_020672

CCDS: CCDS1046

Canonical transcript exons

ENST00000344616 — 4 exons

ExonStartEnd
ENSE00001387931153616295153616325
ENSE00003619904153615235153615381
ENSE00003630533153615829153615936
ENSE00003890238153614255153615022

Expression profiles

Bgee: expression breadth ubiquitous, 206 present calls, max score 99.94.

FANTOM5 (CAGE): breadth broad, TPM avg 26.8678 / max 1473.6466, expressed in 437 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter IDTPM avgSamples expressed
1468926.8505436
146880.01736

Top tissues by expression

281 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
lower esophagus mucosaUBERON:003583499.94gold quality
pharyngeal mucosaUBERON:000035599.63gold quality
esophagus mucosaUBERON:000246999.60gold quality
mucosa of transverse colonUBERON:000499199.46gold quality
tongue squamous epitheliumUBERON:000691999.36gold quality
skin of abdomenUBERON:000141699.28gold quality
oral cavityUBERON:000016799.08gold quality
body of tongueUBERON:001187699.01gold quality
skin of legUBERON:000151198.84gold quality
gingivaUBERON:000182898.83gold quality
rectumUBERON:000105298.82gold quality
gingival epitheliumUBERON:000194998.79gold quality
zone of skinUBERON:000001498.61gold quality
esophagus squamous epitheliumUBERON:000692098.41gold quality
mammalian vulvaUBERON:000099798.21gold quality
penisUBERON:000098998.05gold quality
squamous epitheliumUBERON:000691497.93gold quality
epithelium of esophagusUBERON:000197697.81gold quality
nasal cavity epitheliumUBERON:000538497.75gold quality
nippleUBERON:000203097.71gold quality
tongueUBERON:000172397.66gold quality
ileal mucosaUBERON:000033197.51gold quality
cervix epitheliumUBERON:000480197.51gold quality
mouth mucosaUBERON:000372997.41gold quality
hair follicleUBERON:000207397.38gold quality
duodenumUBERON:000211497.35gold quality
olfactory segment of nasal mucosaUBERON:000538697.24gold quality
upper arm skinUBERON:000426397.19gold quality
minor salivary glandUBERON:000183097.15gold quality
upper leg skinUBERON:000426296.73gold quality

Single-cell (SCXA)

Detected in 17 experiment(s), a significant marker in 16.

ExperimentMarker?Max mean expression
E-HCAD-1yes8744.09
E-MTAB-8142yes5265.10
E-MTAB-8060yes2023.79
E-CURD-79yes1992.03
E-CURD-114yes1880.29
E-MTAB-8221yes1545.78
E-MTAB-10885yes1405.08
E-MTAB-8495yes1191.86
E-MTAB-10662yes588.81
E-ANND-5yes573.54
E-MTAB-8410yes62.70
E-MTAB-5061yes26.93
E-HCAD-10yes25.33
E-MTAB-10553yes24.89
E-HCAD-9yes10.80

Regulation

Is transcription factor: no

miRNA regulators (miRDB)

19 targeting S100A14, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-607799.9968.042299
HSA-MIR-4725-3P99.9669.532520
HSA-MIR-6780B-5P99.9669.602562
HSA-MIR-211099.9666.681930
HSA-MIR-335-3P99.9373.364958
HSA-MIR-153-5P99.8973.866317
HSA-MIR-427199.8868.322244
HSA-MIR-5004-5P99.6866.631294
HSA-MIR-6871-3P99.4368.85741
HSA-MIR-3678-3P99.3167.101432
HSA-MIR-6852-5P99.1766.692073
HSA-MIR-4477A98.8369.752952
HSA-MIR-445198.8268.171455
HSA-MIR-797798.6566.182590
HSA-MIR-450A-2-3P97.9167.561459
HSA-MIR-445697.5064.881678
HSA-MIR-6841-5P97.1967.29409
HSA-MIR-6736-3P96.9865.221342
HSA-MIR-624-5P96.0068.88728

Literature-anchored findings (GeneRIF, showing 31)

  • Data constitute strong evidence in support of the notion that S100A14 might function as a cancer suppressor working in the P53 pathway and play a role in esophageal carcinogenesis. (PMID:19351828)
  • S100A14 and S100A4 have roles in metastasis in colorectal cancer after surgery (PMID:19956863)
  • S100A14 induces cell apoptosis is partially in a RAGE-dependent manner (PMID:21559403)
  • S100A14 provides a novel role in oral squamous cell carcinoma cell proliferation by inducing G1-arrest (PMID:22032898)
  • that S100A14 promotes cell motility and invasiveness by regulating the expression and function of MMP2 in a p53-dependent manner. (PMID:22451655)
  • The solution structure of homodimeric S100A14 in the apo state solved by NMR (PMID:23197251)
  • High S100A14 expression is associated with metastasis of hepatocellular carcinoma. (PMID:23886191)
  • S100A14 interacts with S100A16 and regulates its expression in human cancer cells. (PMID:24086685)
  • Data demonstrate that S100A14 is transcriptionally regulated by JunB and involved in esophageal squamous cell carcinoma cell differentiation. (PMID:24107296)
  • Data show that S100A14 and HER2 are colocalized in plasma membrane of breast cancer tissue cells and breast cancer cell lines. (PMID:24285542)
  • Data indicate that S100A14 has a crucial role in EOC progression, and its overexpression is associated with poor prognosis. (PMID:24939856)
  • Data show that the genetic variant 425G>A on the 5’-UTR of calcium-binding protein S100A14 was associated with reduced S100A14 expression in gastric cancer (GC) cells. (PMID:25266115)
  • The antimicrobial peptides psoriasin (S100A7) and koebnerisin (S100A15) suppress extracellular matrix production and proliferation of human fibroblasts (PMID:25502330)
  • Co-expression of S100A14 and S100A16 correlates with a poor prognosis in human breast cancer and promotes cancer cell invasion (PMID:25884418)
  • S100A14 is expressed in epithelial-like, but not in mesenchymal-like, triple-negative breast cancer cells in vitro. (PMID:25912829)
  • We identified a two-gene signature including KCNN4 and S100A14 which was related to recurrence in optimally debulked serous ovarian carcinoma patients (PMID:27270322)
  • Increased S100A15 expression and decreased DNA methylation of its gene promoter region were associated with high metastasis potential and poor outcome in lung adenocarcinoma. (PMID:28498804)
  • results indicate that S100A14 may have a role in the induction of differentiation and inhibition of cell metastasis in gastric cancer. (PMID:28726786)
  • S100A14 is expressed in a subset of lung adenocarcinoma, and its expression is related to certain clinicopathological parameters. Furthermore, S100A14 expression was strongly correlated with migration and invasion in lung adenocarcinoma cells. (PMID:28950283)
  • S100A14 increases the motility of lung adenocarcinoma cells, and might be a diagnostic and prognostic serum biomarker and potential therapeutic target for lung adenocarcinoma. (PMID:29733545)
  • Low S100A14 expression is associated with Colorectal Cancer. (PMID:31882495)
  • Loss of S100A14 expression at the tumor-invading front correlates with poor differentiation and worse prognosis in oral squamous cell carcinoma. (PMID:32202693)
  • A S100A14-CCL2/CXCL5 signaling axis drives breast cancer metastasis. (PMID:32483412)
  • S100A14 suppresses metastasis of nasopharyngeal carcinoma by inhibition of NF-kB signaling through degradation of IRAK1. (PMID:32555330)
  • S100A14 serum level and its correlation with prognostic factors in breast cancer. (PMID:32984913)
  • S100A14 promotes progression and gemcitabine resistance in pancreatic cancer. (PMID:33579599)
  • S100A14 inhibits cell growth and epithelial-mesenchymal transition (EMT) in prostate cancer through FAT1-mediated Hippo signaling pathway. (PMID:33890248)
  • Circ_0003221 Downregulation Restrains Cervical Cancer Cell Growth, Metastasis and Angiogenesis by Governing the miR-139-3p/S100A14 Pathway. (PMID:35023052)
  • Construction of immune-related signature and identification of S100A14 determining immune-suppressive microenvironment in pancreatic cancer. (PMID:35953822)
  • Induction of Antimicrobial Protein S100A15 Expression by Oral Microbial Pathogens Is Toll-like Receptors-Dependent Activation of c-Jun-N-Terminal Kinase (JNK), p38, and NF-kappaB Pathways. (PMID:36982421)
  • LncRNA CTBP1-AS inhibits TP63-mediated activation of S100A14 during prostate cancer progression. (PMID:38476086)

Cross-species orthologs

5 orthologs

OrganismSymbolGene ID
danio_rerios100sENSDARG00000036773
danio_rerios100a10aENSDARG00000037425
danio_rerios100tENSDARG00000055589
mus_musculusS100a14ENSMUSG00000042306
rattus_norvegicusS100a14ENSRNOG00000069413

Paralogs (21): CRNN (ENSG00000143536), S100A8 (ENSG00000143546), S100A7 (ENSG00000143556), S100B (ENSG00000160307), S100A1 (ENSG00000160678), S100A11 (ENSG00000163191), S100A9 (ENSG00000163220), S100A12 (ENSG00000163221), S100P (ENSG00000163993), S100G (ENSG00000169906), S100Z (ENSG00000171643), S100A7A (ENSG00000184330), S100A3 (ENSG00000188015), S100A16 (ENSG00000188643), SNTN (ENSG00000188817), S100A13 (ENSG00000189171), S100A4 (ENSG00000196154), S100A5 (ENSG00000196420), S100A2 (ENSG00000196754), S100A10 (ENSG00000197747), S100A6 (ENSG00000197956)

Protein

Protein identifiers

Protein S100-A14Q9HCY8 (reviewed: Q9HCY8)

Alternative names: S100 calcium-binding protein A14

All UniProt accessions (1): Q9HCY8

UniProt curated annotations — full annotation on UniProt →

Function. Modulates P53/TP53 protein levels, and thereby plays a role in the regulation of cell survival and apoptosis. Depending on the context, it can promote cell proliferation or apoptosis. Plays a role in the regulation of cell migration by modulating the levels of MMP2, a matrix protease that is under transcriptional control of P53/TP53. Does not bind calcium.

Subunit / interactions. Homodimer. Interacts with AGER.

Subcellular location. Cytoplasm.

Tissue specificity. Expressed at highest levels in colon and at moderate levels in thymus, kidney, liver, small intestine, and lung. Low expression in heart and no expression is seen in brain, skeletal muscle, spleen, placenta and peripheral blood leukocytes.

Similarity. Belongs to the S-100 family.

RefSeq proteins (1): NP_065723* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR011992EF-hand-dom_pairHomologous_superfamily
IPR013787S100_Ca-bd_subDomain

Pfam: PF01023

UniProt features (11 total): helix 5, strand 2, turn 2, chain 1, domain 1

Structure

Experimental structures (PDB)

1 structures.

PDBMethodResolution (Å)
2M0RSOLUTION NMR

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q9HCY8-F177.330.30

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 179 (showing top): GOBP_MYELOID_LEUKOCYTE_MIGRATION, GOBP_CELL_CHEMOTAXIS, JAEGER_METASTASIS_DN, AREB6_01, GGGTGGRR_PAX4_03, GOBP_REGULATION_OF_LEUKOCYTE_MIGRATION, GOBP_LEUKOCYTE_CHEMOTAXIS, GOBP_REGULATION_OF_MONONUCLEAR_CELL_MIGRATION, KANG_FLUOROURACIL_RESISTANCE_DN, GOBP_POSITIVE_REGULATION_OF_RESPONSE_TO_EXTERNAL_STIMULUS, GOBP_TAXIS, GOBP_LEUKOCYTE_MIGRATION, GOBP_REGULATION_OF_IMMUNE_RESPONSE, RICKMAN_METASTASIS_DN, GOBP_DEFENSE_RESPONSE_TO_OTHER_ORGANISM

GO Biological Process (7): apoptotic process (GO:0006915), response to lipopolysaccharide (GO:0032496), toll-like receptor 4 signaling pathway (GO:0034142), defense response to bacterium (GO:0042742), calcium ion homeostasis (GO:0055074), positive regulation of granulocyte chemotaxis (GO:0071624), positive regulation of monocyte chemotaxis (GO:0090026)

GO Molecular Function (4): calcium ion binding (GO:0005509), chemokine receptor binding (GO:0042379), calcium-dependent protein binding (GO:0048306), protein binding (GO:0005515)

GO Cellular Component (4): obsolete extracellular space (GO:0005615), perinuclear region of cytoplasm (GO:0048471), extracellular exosome (GO:0070062), cytoplasm (GO:0005737)

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
positive regulation of leukocyte chemotaxis2
cellular anatomical structure2
programmed cell death1
apoptotic signaling pathway1
execution phase of apoptosis1
response to molecule of bacterial origin1
response to lipid1
response to oxygen-containing compound1
cell surface toll-like receptor signaling pathway1
defense response1
response to bacterium1
monoatomic cation homeostasis1
inorganic ion homeostasis1
granulocyte chemotaxis1
regulation of granulocyte chemotaxis1
monocyte chemotaxis1
positive regulation of mononuclear cell migration1
regulation of monocyte chemotaxis1
metal ion binding1
G protein-coupled receptor binding1
cytokine receptor binding1
calcium ion binding1
protein binding1
binding1
cytoplasm1
extracellular vesicle1
intracellular anatomical structure1

Protein interactions and networks

STRING

706 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
S100A14S100A16Q96FQ6802
S100A14HRNRQ86YZ3777
S100A14RNF6Q9Y252683
S100A14DLEC1Q9Y238669
S100A14NUCB1Q02818665
S100A14LZTS1Q9Y250650
S100A14S100A7AQ86SG5643
S100A14S100A2P29034604
S100A14S100A6P06703594
S100A14S100A3P33764591
S100A14S100A5P33763582
S100A14S100A1P23297570
S100A14ADH1BP00325544
S100A14S100A7P31151542
S100A14S100ZQ8WXG8541

IntAct

64 interactions, top by confidence:

ABTypeScore
XRCC5XRCC6psi-mi:“MI:0914”(association)0.970
S100A14S100A16psi-mi:“MI:0915”(physical association)0.780
S100A16S100A14psi-mi:“MI:0915”(physical association)0.780
ASF1AHAT1psi-mi:“MI:0914”(association)0.640
CEP20CEP20psi-mi:“MI:0915”(physical association)0.590
S100A14MAGEA6psi-mi:“MI:0915”(physical association)0.560
S100A13S100A14psi-mi:“MI:0915”(physical association)0.560
ERBB2NDUFA4psi-mi:“MI:0914”(association)0.530
S100A14MYH9psi-mi:“MI:0407”(direct interaction)0.440
S100A14SLC8A1psi-mi:“MI:0407”(direct interaction)0.440
TRPM4S100A14psi-mi:“MI:0407”(direct interaction)0.440
S100A14GOT1psi-mi:“MI:0915”(physical association)0.400
AKT1S100A14psi-mi:“MI:0915”(physical association)0.370
AURKAS100A14psi-mi:“MI:0915”(physical association)0.370
S100A14CASP8psi-mi:“MI:0915”(physical association)0.370
FGFR2S100A14psi-mi:“MI:0915”(physical association)0.370
SMAD4S100A14psi-mi:“MI:0915”(physical association)0.370
STK11S100A14psi-mi:“MI:0915”(physical association)0.370
ECH1A2ML1psi-mi:“MI:0914”(association)0.350
ZIC1IMPA2psi-mi:“MI:0914”(association)0.350
NEDD4HMGB1P1psi-mi:“MI:0914”(association)0.350
PRDM16GAPDHSpsi-mi:“MI:0914”(association)0.350
TDRKHGGCTpsi-mi:“MI:0914”(association)0.350
HTRA4PSMD12psi-mi:“MI:0914”(association)0.350
ATG16L1psi-mi:“MI:0914”(association)0.350

BioGRID (75): S100A14 (Two-hybrid), S100A16 (Two-hybrid), S100A14 (Affinity Capture-RNA), S100A14 (Affinity Capture-MS), S100A14 (Affinity Capture-MS), S100A14 (Affinity Capture-MS), S100A14 (Affinity Capture-MS), S100A16 (Two-hybrid), S100A14 (Affinity Capture-MS), S100A14 (Two-hybrid), S100A14 (Two-hybrid), S100A14 (Two-hybrid), S100A14 (Two-hybrid), S100A14 (Two-hybrid), S100A14 (Two-hybrid)

ESM2 similar proteins: A5PJN0, A8J3A0, F1SSF9, O73763, O76038, O81223, O81445, O93409, P02613, P04113, P05938, P05944, P05963, P08051, P08052, P13543, P18087, P30644, P45961, Q01449, Q02045, Q06A97, Q0P571, Q0VFG3, Q10131, Q3HRN7, Q3HRN9, Q3HRP0, Q3HRP2, Q3HRP5, Q3MHP3, Q5QIT3, Q5XJX1, Q63ZJ3, Q6R556, Q75KU4, Q7XC27, Q8CD10, Q8IYU8, Q8LAS7

Diamond homologs: O77691, O77791, P02632, P02633, P02634, P02638, P02639, P04163, P04271, P04631, P05109, P05942, P05943, P05964, P06702, P06703, P07091, P08207, P10462, P14069, P20930, P23297, P24479, P24480, P25815, P26447, P27003, P27005, P28318, P28782, P28783, P29034, P29377, P30801, P31725, P31949, P31950, P33763, P33764, P35466

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

25 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance21
Likely benign0
Benign0

Top pathogenic / likely-pathogenic (0)

SpliceAI

0 predictions. Top by Δscore:

AlphaMissense

682 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
1:153614957:G:CF81L0.994
1:153614957:G:TF81L0.994
1:153614959:A:GF81L0.994
1:153615266:A:GL49P0.994
1:153615325:A:CF29L0.992
1:153615325:A:TF29L0.992
1:153615327:A:GF29L0.992
1:153614947:A:GW85R0.991
1:153614947:A:TW85R0.991
1:153615326:A:GF29S0.989
1:153615351:C:GA21P0.989
1:153615275:A:GL46P0.988
1:153615338:A:GL25P0.987
1:153614925:G:TA92D0.986
1:153615355:C:AE19D0.986
1:153615355:C:GE19D0.986
1:153615251:A:GL54P0.985
1:153614948:G:CF84L0.984
1:153614948:G:TF84L0.984
1:153614950:A:GF84L0.984
1:153614958:A:CF81C0.984
1:153614958:A:GF81S0.984
1:153615290:A:GL41P0.984
1:153615347:A:TI22N0.983
1:153615338:A:TL25H0.980
1:153615356:T:AE19V0.980
1:153614945:C:AW85C0.979
1:153614945:C:GW85C0.979
1:153615290:A:TL41Q0.976
1:153614949:A:GF84S0.975

dbSNP variants (sampled 300 via entrez): RS1001624922 (1:153615290 A>G), RS1001836786 (1:153615047 C>A,T), RS1003413657 (1:153617881 C>T), RS1003633157 (1:153617791 C>T), RS1003665967 (1:153618139 C>T), RS1004208200 (1:153617513 C>T), RS1004474835 (1:153613928 A>C,G,T), RS1004931918 (1:153616928 G>C), RS1005418348 (1:153615186 G>A), RS1005498546 (1:153616585 CAG>C), RS1005738345 (1:153618111 G>A), RS1006973156 (1:153614196 C>T), RS1008006357 (1:153615934 G>A,C), RS1009065027 (1:153617160 G>C,T), RS1010355132 (1:153616519 G>A)

Disease associations

OMIM: gene MIM:607986 | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

0 associations (top):

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 1 entry (VIP=true, CPIC=false)

CTD chemical–gene interactions

57 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Valproic Acidincreases expression, affects cotreatment5
sodium arsenitedecreases expression, increases expression3
perfluorooctanoic acidincreases expression, decreases expression2
mercuric bromideincreases expression, affects cotreatment2
Benzo(a)pyrenedecreases methylation, increases expression2
Phenylmercuric Acetateincreases expression, affects cotreatment2
Tobacco Smoke Pollutionaffects expression, increases expression2
Cyclosporineincreases expression2
Aflatoxin B1increases expression, increases methylation, decreases expression2
Cadmium Chlorideincreases abundance, decreases expression2
p-Chloromercuribenzoic Acidaffects cotreatment, increases expression2
aristolochic acid Iincreases expression1
dicrotophosdecreases expression1
methyleugenolincreases expression1
bisphenol Adecreases expression1
tris(2-butoxyethyl) phosphateaffects expression1
beta-lapachoneincreases expression1
methylparabendecreases expression1
tris(1,3-dichloro-2-propyl)phosphateincreases expression1
butyraldehydeincreases expression1
cupric chloridedecreases expression1
lewisiteincreases expression1
isobutyl alcoholaffects cotreatment, increases abundance, increases expression1
perfluoro-n-nonanoic acidincreases expression1
4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamideaffects cotreatment, increases expression1
ICG 001decreases expression1
abrineincreases expression1
dorsomorphinaffects cotreatment, increases expression1
bisphenol Sdecreases expression1
Oxaliplatinincreases expression1

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.

No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.