S1PR1

gene
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Also known as edg-1D1S3362CD363

Summary

S1PR1 (sphingosine-1-phosphate receptor 1, HGNC:3165) is a protein-coding gene on chromosome 1p21.2, encoding Sphingosine 1-phosphate receptor 1 (P21453). G-protein coupled receptor for the bioactive lysosphingolipid sphingosine 1-phosphate (S1P) that seems to be coupled to the G(i) subclass of heteromeric G proteins.

The protein encoded by this gene is structurally similar to G protein-coupled receptors and is highly expressed in endothelial cells. It binds the ligand sphingosine-1-phosphate with high affinity and high specificity, and suggested to be involved in the processes that regulate the differentiation of endothelial cells. Activation of this receptor induces cell-cell adhesion. Alternative splicing results in multiple transcript variants.

Source: NCBI Gene 1901 — RefSeq curated summary.

At a glance

  • GWAS associations: 15
  • Clinical variants (ClinVar): 28 total
  • Druggable target: yes — 13 molecules with ChEMBL bioactivity
  • MANE Select transcript: NM_001400

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:3165
Approved symbolS1PR1
Namesphingosine-1-phosphate receptor 1
Location1p21.2
Locus typegene with protein product
StatusApproved
Aliasesedg-1, D1S3362, CD363
Ensembl geneENSG00000170989
Ensembl biotypeprotein_coding
OMIM601974
Entrez1901

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 9 protein_coding, 1 protein_coding_CDS_not_defined

ENST00000305352, ENST00000475289, ENST00000475821, ENST00000561748, ENST00000648480, ENST00000649383, ENST00000876129, ENST00000876130, ENST00000945456, ENST00000945457

RefSeq mRNA: 2 — MANE Select: NM_001400 NM_001320730, NM_001400

CCDS: CCDS777

Canonical transcript exons

ENST00000305352 — 2 exons

ExonStartEnd
ENSE00001167649101238822101241518
ENSE00001356737101237019101237099

Expression profiles

Bgee: expression breadth ubiquitous, 234 present calls, max score 97.46.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 37.1880 / max 678.4133, expressed in 1264 samples.

FANTOM5 promoters (11 alternative TSS)

Promoter IDTPM avgSamples expressed
427419.27701020
42779.36881034
42733.3973518
42722.0522492
42760.7981395
42750.7692339
42790.6389237
42780.2929157
42810.2416143
42820.213894

Top tissues by expression

279 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
right lungUBERON:000216797.46gold quality
upper lobe of left lungUBERON:000895297.01gold quality
ventricular zoneUBERON:000305396.70gold quality
omental fat padUBERON:001041496.60gold quality
peritoneumUBERON:000235896.50gold quality
upper lobe of lungUBERON:000894896.42gold quality
adipose tissue of abdominal regionUBERON:000780896.12gold quality
granulocyteCL:000009495.89gold quality
subcutaneous adipose tissueUBERON:000219095.18gold quality
apex of heartUBERON:000209894.00gold quality
adipose tissueUBERON:000101393.77gold quality
heart left ventricleUBERON:000208493.43gold quality
cardiac ventricleUBERON:000208293.16gold quality
right atrium auricular regionUBERON:000663193.06gold quality
lungUBERON:000204892.98gold quality
caudate nucleusUBERON:000187392.69gold quality
connective tissueUBERON:000238492.59gold quality
right lobe of thyroid glandUBERON:000111992.19gold quality
ganglionic eminenceUBERON:000402392.16gold quality
nucleus accumbensUBERON:000188292.06gold quality
amygdalaUBERON:000187692.05gold quality
spleenUBERON:000210692.05gold quality
gall bladderUBERON:000211091.95gold quality
heartUBERON:000094891.82gold quality
putamenUBERON:000187491.56gold quality
left lobe of thyroid glandUBERON:000112091.49gold quality
adrenal tissueUBERON:001830391.10gold quality
cardiac atriumUBERON:000208191.05gold quality
tibial nerveUBERON:000132390.56gold quality
left uterine tubeUBERON:000130390.51gold quality

Single-cell (SCXA)

Detected in 17 experiment(s), a significant marker in 12.

ExperimentMarker?Max mean expression
E-GEOD-135922yes44.96
E-MTAB-8410yes29.08
E-CURD-46yes29.06
E-GEOD-93593yes18.27
E-MTAB-9067yes16.20
E-GEOD-84465yes13.55
E-MTAB-8498yes11.38
E-MTAB-9543yes11.04
E-MTAB-5061yes6.43
E-GEOD-130148yes4.92
E-MTAB-9801yes4.69
E-MTAB-8205no369.90
E-CURD-95no272.67
E-MTAB-8911no201.47
E-CURD-112no3.85

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): ATF6, CEBPB, ESR1, FLI1, FOS, FOXO1, KLF2, MYC, NFKB1, PITX2, PPARA, PPARG, STAT3, TEAD4

miRNA regulators (miRDB)

110 targeting S1PR1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-4262100.0073.263931
HSA-MIR-3162-3P100.0065.37363
HSA-MIR-1277-5P100.0073.955056
HSA-MIR-181A-5P99.9972.962995
HSA-MIR-181B-5P99.9972.972996
HSA-MIR-181C-5P99.9972.952996
HSA-MIR-181D-5P99.9973.042997
HSA-MIR-548AW99.9972.573559
HSA-MIR-4789-3P99.9970.752484
HSA-MIR-19A-3P99.9875.332762
HSA-MIR-19B-3P99.9875.442754
HSA-MIR-3065-5P99.9771.563281
HSA-MIR-1468-3P99.9672.743797
HSA-MIR-551B-5P99.9671.283493
HSA-MIR-9-3P99.9670.882068
HSA-MIR-55999.9572.283609
HSA-MIR-548AB99.9571.313488
HSA-MIR-548A-5P99.9471.273482
HSA-MIR-548AD-5P99.9471.233502
HSA-MIR-548AE-5P99.9471.233502
HSA-MIR-548AK99.9471.243488
HSA-MIR-548AM-5P99.9471.243488
HSA-MIR-548AP-5P99.9471.143489
HSA-MIR-548AQ-5P99.9471.343426
HSA-MIR-548AR-5P99.9471.283515
HSA-MIR-548AS-5P99.9471.223482
HSA-MIR-548AU-5P99.9471.243488
HSA-MIR-548AY-5P99.9471.233502
HSA-MIR-548B-5P99.9471.233502
HSA-MIR-548BB-5P99.9471.273509

Literature-anchored findings (GeneRIF, showing 40)

  • in mouse, this protein is essential for vascular maturation (PMID:11032855)
  • phosphorylation of the sphingosine 1-phosphate (SSP) receptor “endothelial differentiation gene 1” (EDG1 or S1P(1)) receptor is increased in response to either SSP or phorbol 12-myristate 13-acetate (PMA) exposure but not lysophosphatidic acid (PMID:11741892)
  • functions as an intracellular signaling molecule and angiogenesis factor (PMID:11915345)
  • activates Rho family G proteins and cell motility (PMID:11915348)
  • S1P(1) inhibits Ca(2+) signalling most likely via G(i) proteins and classical PKC isoforms. Co-expression of S1P(1) with S1P(3), but not S1P(2), reversed the inhibitory effect of S1P(1), furthermore suggesting a specific interplay of S1P receptor subtypes (PMID:12742228)
  • S1P1 receptors expressed in mouse Th1 cells mediate suppression of T cell proliferation and cytokine production. (PMID:14500646)
  • Immunosuppressant FTY720 activates sphingosine 1-phosphate receptors that affect responsiveness of lymphocytes to chemokines such as stromal cell-derived factor 1. (PMID:14988150)
  • cross-communication between the prototypical barrier-protective S1P and barrier-disruptive PAR1 pathway (PMID:15626732)
  • Persistent expression of S1P1 receptor by lymphocytes of S1P1 receptor-transgenic mice suppresses delayed-type hypersensitivity and results in production of significantly more IgE antibody (Ab) and less IgG2 Ab than in wild-type mice. (PMID:15699128)
  • endothelial protein C receptor ligation and sphingosine 1-phosphate receptor transactivation results in endothelial cell cytoskeletal rearrangement and barrier protection through activated protein C (PMID:15710622)
  • Signaling by S1P1 receptor-transgenic mice affects systemic trafficking of peripheral T cells and primary immune responses; levels of S1P1 receptor expression represent an important mechanism of immune regulation. (PMID:15728452)
  • Tyrosine sulfation of S1P1 may be a major controller of S1P effects on T cell traffic (PMID:16148028)
  • S1P-induced recruitment of S1P1 to CEM fractions promotes PI3 kinase-mediated Tiam1/Rac1 activation required for alpha-actinin-1/4-regulated cortical actin rearrangement and EC barrier enhancement (PMID:16195373)
  • The constitutively active endogenous S1P1 receptor enhances PDGF-induced cell migration. (PMID:16319133)
  • heterotrimeric G protein-dependent ERK1/2 activation is mediated by IGF-1 and IGF-2 by transactivating sphingosine 1-phosphate receptors (PMID:16926156)
  • Transactivation of sphingosine 1-phosphate receptors is essential for vascular barrier regulation (PMID:16963454)
  • FTY720-P targets the S1P1 receptor to the ubiquitinylation and proteasomal degradation pathway (PMID:17237497)
  • Sphingosine 1-phosphate-induced inflammatory response genes expression is mediated through S1P(1) and S1P(3) (PMID:17331465)
  • FTY720 induces time-dependent modulation of S1P receptors on human OPCs with consequent functional responses that are directly relevant for the remyelination process. (PMID:17918267)
  • S1P(1) receptor, without stimulating Ca(2+) increases, mediates chemotaxis of keratinocytes (PMID:18172456)
  • S1P-mediated signaling via the S1P1/Gi/Rho GTPases pathway activates integrin alpha v beta 3, which is indispensable for S1P-stimulated chemotactic response of ECs. (PMID:18247041)
  • S1P promotes lymphangiogenesis by stimulating S1P1/G(i)/phospholipase C/Ca(2+) signaling pathways. (PMID:18541717)
  • HDL has endothelial barrier promoting activities, which are attributable to its S1P component and signaling through the S1P1/Akt pathway. (PMID:18606817)
  • Datas suggest that filamin A links sphingosine kinase 1 and sphingosine-1-phosphate receptor 1 to locally influence the dynamics of actin cytoskeletal structures at lamellipodia to promote cell movement. (PMID:18644866)
  • Plays essential roles in the pathogenesis of rheumatoid arthritis by modulating fibroblast-like synoviocyte migration, cytokine/chemokine production, and cell survival. (PMID:18658144)
  • FOXO1 controls the expression of L-selectin and EDG1 and EDG6, receptors that regulate lymphocyte trafficking (PMID:18713968)
  • S1P(1) acts as an inhibitor of CXCR4-dependent migration of hematopoietic cells to sites of SDF-1 production. (PMID:18760838)
  • subconfluent pulmonary artery smooth muscle cells express predominantly S1P2 and S1P3 receptors; S1P1 receptor mRNA levels are significantly up-regulated following bFGF treatment (PMID:18773427)
  • the crucial role of activation of the SPHK1S1PS1P1 signaling pathway in response to inflammatory mediators in endothelial cells in regulating endothelial barrier homeostasis. (PMID:18849324)
  • plasma membrane S1P(1) receptors are rapidly internalized and subsequently translocated to nuclear compartment upon S1P stimulation; nuclear S1P(1) is able to regulate the transcription of Cyr61 and CTGF (PMID:18936953)
  • S1PR1 has an important role in disease-related angiogenesis, especially in the processes of migration/invasion and tube formation. (PMID:19150609)
  • Data suggest that human antibodies to the amino terminus of the type 1 sphingosine 1-phosphate receptor suppress T-cell trafficking sufficiently to impair host defense and provide therapeutic immunosuppression. (PMID:19158154)
  • Akt-mediated transactivation of the S1P1 receptor in caveolin-enriched microdomains regulates endothelial barrier enhancement by oxidized phospholipids. (PMID:19286607)
  • IGFBP-3 in MCF-10A cells requires SphK1 activity and S1P1/S1P3, suggesting that S1P, the product of SphK activity and ligand for S1P1 and S1P3 (PMID:19633297)
  • The activation of S1PR results in increased chemotactic response of CD34(+) hematopoietic stem cells to SDF-1. (PMID:19778812)
  • downregulation of S1P(1) expression enhances the malignancy of glioblastoma by increasing cell proliferation and correlates with the shorter survival of patients with glioblastoma. (PMID:19810093)
  • S1P(1) signaling linked to cell migration is facilitated by a functional interaction with P-Rex1 via a mechanism that involves the maintenance of S1P(1) receptors at the cell membrane. (PMID:20036214)
  • Sphingosine-1-phosphate receptor 1 immunohistochemistry may be useful in the histological diagnosis of mantle cell lymphoma with formalin-fixed and paraffin-embedded sections. (PMID:20081804)
  • Protein S controls hypoxic/ischemic blood-brain barrier disruption through the TAM receptor Tyro3 and sphingosine 1-phosphate receptor1. (PMID:20348395)
  • Mobilization with rhG-CSF obviously down-regulates the expression of S1P1 in CD4+ T cells. (PMID:20416181)

Cross-species orthologs

3 orthologs

OrganismSymbolGene ID
danio_rerios1pr1ENSDARG00000042690
mus_musculusS1pr1ENSMUSG00000045092
rattus_norvegicusS1pr1ENSRNOG00000013683

Paralogs (18): LPAR2 (ENSG00000064547), CNR1 (ENSG00000118432), MC3R (ENSG00000124089), S1PR4 (ENSG00000125910), GPR12 (ENSG00000132975), GPR6 (ENSG00000146360), GPR119 (ENSG00000147262), MC4R (ENSG00000166603), LPAR3 (ENSG00000171517), MC5R (ENSG00000176136), S1PR5 (ENSG00000180739), GPR3 (ENSG00000181773), MC2R (ENSG00000185231), CNR2 (ENSG00000188822), LPAR1 (ENSG00000198121), S1PR3 (ENSG00000213694), MC1R (ENSG00000258839), S1PR2 (ENSG00000267534)

Protein

Protein identifiers

Sphingosine 1-phosphate receptor 1P21453 (reviewed: P21453)

Alternative names: Endothelial differentiation G-protein coupled receptor 1, Sphingosine 1-phosphate receptor Edg-1

All UniProt accessions (2): P21453, A0A3B3IUD4

UniProt curated annotations — full annotation on UniProt →

Function. G-protein coupled receptor for the bioactive lysosphingolipid sphingosine 1-phosphate (S1P) that seems to be coupled to the G(i) subclass of heteromeric G proteins. Signaling leads to the activation of RAC1, SRC, PTK2/FAK1 and MAP kinases. Plays an important role in cell migration, probably via its role in the reorganization of the actin cytoskeleton and the formation of lamellipodia in response to stimuli that increase the activity of the sphingosine kinase SPHK1. Required for normal chemotaxis toward sphingosine 1-phosphate. Required for normal embryonic heart development and normal cardiac morphogenesis. Plays an important role in the regulation of sprouting angiogenesis and vascular maturation. Inhibits sprouting angiogenesis to prevent excessive sprouting during blood vessel development. Required for normal egress of mature T-cells from the thymus into the blood stream and into peripheral lymphoid organs. Plays a role in the migration of osteoclast precursor cells, the regulation of bone mineralization and bone homeostasis. Plays a role in responses to oxidized 1-palmitoyl-2-arachidonoyl-sn-glycero-3-phosphocholine by pulmonary endothelial cells and in the protection against ventilator-induced lung injury.

Subunit / interactions. Interacts with GNAI1 and GNAI3. Interacts with CD69; this interaction promotes S1PR1 degradation.

Subcellular location. Cell membrane. Endosome. Membrane raft.

Tissue specificity. Endothelial cells, and to a lesser extent, in vascular smooth muscle cells, fibroblasts, melanocytes, and cells of epithelioid origin.

Post-translational modifications. S1P-induced endothelial cell migration requires the PKB/AKT1-mediated phosphorylation of the third intracellular loop at the Thr-236 residue. Palmitoylated by ZDHHC5. Palmitoylation is required for targeting to plasma membrane, enabling G(i) coupling.

Induction. By the tumor promoter phorbol 12-myristate 13-acetate (PMA) in the presence of cycloheximide.

Similarity. Belongs to the G-protein coupled receptor 1 family.

RefSeq proteins (2): NP_001307659, NP_001391* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR000276GPCR_RhodpsnFamily
IPR000987EDG1Family
IPR004061S1P_rcptFamily
IPR017452GPCR_Rhodpsn_7TMDomain

Pfam: PF00001

UniProt features (67 total): helix 13, mutagenesis site 10, topological domain 8, transmembrane region 7, turn 5, strand 5, modified residue 4, sequence variant 3, compositionally biased region 2, binding site 2, glycosylation site 2, disulfide bond 2, chain 1, region of interest 1, lipid moiety-binding region 1, sequence conflict 1

Structure

Experimental structures (PDB)

21 structures.

PDBMethodResolution (Å)
7TD4ELECTRON MICROSCOPY2.6
9VNZELECTRON MICROSCOPY2.79
9VO0ELECTRON MICROSCOPY2.79
3V2YX-RAY DIFFRACTION2.8
7VIFELECTRON MICROSCOPY2.83
7EO4ELECTRON MICROSCOPY2.86
7VIEELECTRON MICROSCOPY2.86
7EO2ELECTRON MICROSCOPY2.89
7VIGELECTRON MICROSCOPY2.89
9VO1ELECTRON MICROSCOPY2.97
7EVYELECTRON MICROSCOPY2.98
7VIHELECTRON MICROSCOPY2.98
7TD3ELECTRON MICROSCOPY3
7EVZELECTRON MICROSCOPY3.07
8G94ELECTRON MICROSCOPY3.15
7EW7ELECTRON MICROSCOPY3.27
3V2WX-RAY DIFFRACTION3.35
7WF7ELECTRON MICROSCOPY3.4
7EW0ELECTRON MICROSCOPY3.42
8YICELECTRON MICROSCOPY3.47
9VNYELECTRON MICROSCOPY3.69

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P21453-F181.510.54

Antibody-complex structures (SAbDab): 127EO2, 7EO4, 7EVY, 7EVZ, 7EW0, 7EW7, 7VIE, 7VIF, 7VIG, 7VIH, 7WF7, 8G94

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Ligand- & substrate-binding residues (2): 120–121; 265–269

Post-translational modifications (5): 10, 236, 351, 353, 328

Disulfide bonds (2): 184–191, 282–287

Glycosylation sites (2): 30, 36

Mutagenesis-validated functional residues (10):

PositionPhenotype
120drastically reduced affinity for sphingosine 1-phosphate.
121drastically reduced affinity for sphingosine 1-phosphate.
121slight activation of the receptor at maximal ligand concentration.
169strongly reduced interaction with cd69.
180strongly reduced interaction with cd69.
210impairs sphingosine 1-phosphate binding and signaling.
236acts as a dominant negative gpcr and inhibits s1p-induced rac activation, chemotaxis, and angiogenesis.
265impairs sphingosine 1-phosphate binding and signaling.
269impairs sphingosine 1-phosphate binding and signaling.
292drastically reduced affinity for sphingosine 1-phosphate.

Function

Pathways and Gene Ontology

Reactome pathways

14 pathways

IDPathway
R-HSA-419408Lysosphingolipid and LPA receptors
R-HSA-6785807Interleukin-4 and Interleukin-13 signaling
R-HSA-9679191Potential therapeutics for SARS
R-HSA-1280215Cytokine Signaling in Immune system
R-HSA-162582Signal Transduction
R-HSA-1643685Disease
R-HSA-168256Immune System
R-HSA-372790Signaling by GPCR
R-HSA-373076Class A/1 (Rhodopsin-like receptors)
R-HSA-449147Signaling by Interleukins
R-HSA-500792GPCR ligand binding
R-HSA-5663205Infectious disease
R-HSA-9679506SARS-CoV Infections
R-HSA-9824446Viral Infection Pathways

MSigDB gene sets: 514 (showing top): RNGTGGGC_UNKNOWN, GOBP_EPITHELIUM_DEVELOPMENT, PID_S1P_S1P1_PATHWAY, BROWNE_HCMV_INFECTION_6HR_DN, GOBP_ACTIN_FILAMENT_BUNDLE_ORGANIZATION, GOBP_MUSCLE_TISSUE_DEVELOPMENT, GOBP_CELL_CHEMOTAXIS, GOBP_HEART_TRABECULA_MORPHOGENESIS, BIOCARTA_EDG1_PATHWAY, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, LFA1_Q6, GOBP_SPHINGOLIPID_MEDIATED_SIGNALING_PATHWAY, AREB6_03, GOBP_GROWTH, GOCC_CELL_SURFACE

GO Biological Process (31): angiogenesis (GO:0001525), blood vessel maturation (GO:0001955), cardiac muscle tissue growth involved in heart morphogenesis (GO:0003245), sphingosine-1-phosphate receptor signaling pathway (GO:0003376), chemotaxis (GO:0006935), cell adhesion (GO:0007155), G protein-coupled receptor signaling pathway (GO:0007186), adenylate cyclase-activating G protein-coupled receptor signaling pathway (GO:0007189), adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (GO:0007193), phospholipase C-activating G protein-coupled receptor signaling pathway (GO:0007200), brain development (GO:0007420), cell population proliferation (GO:0008283), cell migration (GO:0016477), transmission of nerve impulse (GO:0019226), lamellipodium assembly (GO:0030032), actin cytoskeleton organization (GO:0030036), regulation of cell adhesion (GO:0030155), neuron differentiation (GO:0030182), positive regulation of cell migration (GO:0030335), regulation of bone mineralization (GO:0030500), leukocyte chemotaxis (GO:0030595), regulation of bone resorption (GO:0045124), endothelial cell differentiation (GO:0045446), positive regulation of transcription by RNA polymerase II (GO:0045944), positive regulation of smooth muscle cell proliferation (GO:0048661), positive regulation of positive chemotaxis (GO:0050927), negative regulation of stress fiber assembly (GO:0051497), heart trabecula morphogenesis (GO:0061384), T cell migration (GO:0072678), signal transduction (GO:0007165), positive regulation of cell population proliferation (GO:0008284)

GO Molecular Function (5): G protein-coupled receptor binding (GO:0001664), G protein-coupled receptor activity (GO:0004930), sphingosine-1-phosphate receptor activity (GO:0038036), sphingolipid binding (GO:0046625), protein binding (GO:0005515)

GO Cellular Component (8): nucleoplasm (GO:0005654), cytoplasm (GO:0005737), endosome (GO:0005768), plasma membrane (GO:0005886), external side of plasma membrane (GO:0009897), membrane raft (GO:0045121), presynapse (GO:0098793), membrane (GO:0016020)

Reactome top-level categories

Rollup of top-11 pathways:

CategoryPathways
Class A/1 (Rhodopsin-like receptors)1
Signaling by Interleukins1
SARS-CoV Infections1
Immune System1
Signal Transduction1
GPCR ligand binding1
Cytokine Signaling in Immune system1
Signaling by GPCR1
Disease1
Viral Infection Pathways1
Infectious disease1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cellular anatomical structure4
G protein-coupled receptor signaling pathway3
cellular process2
adenylate cyclase-modulating G protein-coupled receptor signaling pathway2
blood vessel morphogenesis1
anatomical structure formation involved in morphogenesis1
blood vessel development1
anatomical structure maturation1
heart morphogenesis1
growth involved in heart morphogenesis1
cardiac muscle tissue morphogenesis1
cardiac muscle tissue growth1
sphingolipid mediated signaling pathway1
response to chemical1
taxis1
G protein-coupled receptor activity1
signal transduction1
adenylate cyclase activator activity1
adenylate cyclase inhibitor activity1
phospholipase C activator activity1
central nervous system development1
animal organ development1
head development1
cell motility1
action potential1
cell communication1
chemical synaptic transmission1
nervous system process1
lamellipodium organization1
plasma membrane bounded cell projection assembly1
cytoskeleton organization1
actin filament-based process1
cell adhesion1
regulation of cellular process1
cell differentiation1
generation of neurons1
cell migration1
regulation of cell migration1
positive regulation of cell motility1
regulation of ossification1

Protein interactions and networks

STRING

1903 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
S1PR1CD69Q07108993
S1PR1SPHK1Q9NYA1918
S1PR1SPHK2Q9NRA0870
S1PR1KLF2Q9Y5W3822
S1PR1SELLP14151801
S1PR1F2RL1P55085786
S1PR1ACER2Q5QJU3717
S1PR1PROCRQ9UNN8714
S1PR1CXCR5P32302698
S1PR1CCR7P32248692
S1PR1CXCR4P30991688
S1PR1ARRB2P32121682
S1PR1CXCR3P49682651
S1PR1STAT3P40763640
S1PR1IL6P05231631

IntAct

20 interactions, top by confidence:

ABTypeScore
TRDNTMEM223psi-mi:“MI:0914”(association)0.640
CD69S1PR1psi-mi:“MI:0915”(physical association)0.520
S1PR1RAMP1psi-mi:“MI:0915”(physical association)0.400
RAMP2S1PR1psi-mi:“MI:0915”(physical association)0.400
RAMP3S1PR1psi-mi:“MI:0915”(physical association)0.400
S1PR1RAMP3psi-mi:“MI:0915”(physical association)0.400
CMSS1S1PR1psi-mi:“MI:0915”(physical association)0.370
CLEC2DTMEM120Bpsi-mi:“MI:0914”(association)0.350
S1PR1POTEFpsi-mi:“MI:0914”(association)0.350
S1PR1STXBP3psi-mi:“MI:0914”(association)0.350
S1PR1TNPO2psi-mi:“MI:0914”(association)0.350
S1PR1ISLRpsi-mi:“MI:0914”(association)0.350
SCN3BNBASpsi-mi:“MI:0914”(association)0.350
S1PR1S1PR2psi-mi:“MI:2364”(proximity)0.270
SP1S1PR1psi-mi:“MI:0915”(physical association)0.000

BioGRID (123): S1PR1 (Reconstituted Complex), ACP2 (Affinity Capture-MS), ATP2B3 (Affinity Capture-MS), HK3 (Affinity Capture-MS), SRC (Affinity Capture-MS), GOLPH3L (Affinity Capture-MS), GNAQ (Affinity Capture-MS), ATP12A (Affinity Capture-MS), CD47 (Affinity Capture-MS), ARL10 (Affinity Capture-MS), GNG5 (Affinity Capture-MS), HRAS (Affinity Capture-MS), S1PR1 (Affinity Capture-MS), RAP2A (Affinity Capture-MS), LMBR1 (Affinity Capture-MS)

ESM2 similar proteins: A0A2R9YJI3, B2ZHY2, B4XF06, D4A3U0, O02777, O08530, O43194, O46635, P06199, P14842, P17200, P18599, P20272, P21453, P21554, P28223, P30372, P30544, P32240, P34979, P35363, P43114, P47746, P47936, P48303, P50128, P50129, P56971, Q333S9, Q5E9P3, Q5IS73, Q5U431, Q60F97, Q71SP5, Q75Z89, Q801M1, Q8BZL4, Q91178, Q91559, Q98894

Diamond homologs: O02777, O08530, O77408, O77621, O95136, P20272, P21453, P21554, P30546, P30966, P31389, P31390, P34972, P35367, P47746, P47752, P47936, P48303, P52592, P56971, P70174, Q17232, Q28928, Q333S9, Q5E9P3, Q5IS73, Q71SP5, Q7JQF1, Q801M1, Q90WY5, Q98894, Q98895, Q9DDK4, Q9H228, Q9I8K8, Q9N2B0, Q9N2B1, Q9N2B2, Q9PUI7, Q9PUQ8

SIGNOR signaling

11 interactions.

AEffectBMechanism
AKT“up-regulates activity”S1PR1phosphorylation
“sphingosine 1-phosphate”up-regulatesS1PR1“chemical activation”
fingolimoddown-regulatesS1PR1“chemical inhibition”
AKT1“up-regulates activity”S1PR1phosphorylation
S1PR1“up-regulates activity”GNAI1binding
S1PR1“up-regulates activity”GNAI3binding
S1PR1“up-regulates activity”GNAO1binding
S1PR1“up-regulates activity”GNAZbinding
“sphingosine 1-phosphate(1-)”“up-regulates activity”S1PR1“chemical activation”
ZDHHC5“up-regulates activity”S1PR1palmitoylation
S1PR1up-regulatesGNAI1

Disease & clinical

Cancer significance

Clinical variants and AI predictions

ClinVar

28 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance24
Likely benign0
Benign2

Top pathogenic / likely-pathogenic (0)

SpliceAI

277 predictions. Top by Δscore:

VariantEffectΔscore
1:101237095:GCGAG:Gdonor_gain1.0000
1:101237097:GAGG:Gdonor_loss1.0000
1:101237098:AGGTA:Adonor_loss1.0000
1:101237101:T:Gdonor_loss1.0000
1:101238819:A:AGacceptor_gain0.9900
1:101238820:A:Gacceptor_gain0.9900
1:101238821:G:GGacceptor_gain0.9900
1:101238817:TTAA:Tacceptor_loss0.9800
1:101238819:AAG:Aacceptor_gain0.9800
1:101238821:G:Aacceptor_gain0.9800
1:101238821:GG:Gacceptor_loss0.9800
1:101238821:GGCT:Gacceptor_gain0.9800
1:101236992:G:GGdonor_gain0.9700
1:101237097:GAG:Gdonor_gain0.9700
1:101237766:G:GGdonor_gain0.9700
1:101238809:T:Aacceptor_gain0.9600
1:101238820:AG:Aacceptor_gain0.9600
1:101237100:G:GGdonor_gain0.9300
1:101237753:G:GTdonor_gain0.9300
1:101237097:G:GTdonor_gain0.9200
1:101237676:TAG:Tacceptor_gain0.9200
1:101238814:T:Aacceptor_gain0.9100
1:101238820:AGGCT:Aacceptor_gain0.9100
1:101238821:GGCTG:Gacceptor_gain0.9100
1:101237678:G:Tacceptor_gain0.9000
1:101238821:GGC:Gacceptor_gain0.8900
1:101236990:GA:Gdonor_gain0.8800
1:101238809:T:TAacceptor_loss0.8800
1:101238824:T:Aacceptor_gain0.8700
1:101237677:AG:Aacceptor_gain0.8600

AlphaMissense

0 scored. Top likely-pathogenic:

dbSNP variants (sampled 300 via entrez): RS1000325160 (1:101238370 A>G), RS1000648737 (1:101237667 G>A), RS1000676695 (1:101237908 A>G), RS1001562306 (1:101238277 G>A,T), RS1001601173 (1:101237142 C>G,T), RS1001932612 (1:101238053 G>A,C,T), RS1001945715 (1:101237328 CT>C), RS1002036833 (1:101241987 T>C), RS1002333486 (1:101236052 C>A,T), RS1003729307 (1:101240585 C>T), RS1003907675 (1:101236536 G>C), RS1004546362 (1:101237239 C>A,T), RS1004563521 (1:101242503 C>CA), RS1004598569 (1:101237004 G>C), RS1005211950 (1:101240606 T>A)

Disease associations

OMIM: gene MIM:601974 | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

15 associations (top):

StudyTraitp-value
GCST004627_123Lymphocyte count3.000000e-10
GCST004627_124Lymphocyte count3.000000e-15
GCST004627_125Lymphocyte count2.000000e-19
GCST005997_7Lymphocyte count3.000000e-32
GCST006535_2Irritable bowel syndrome3.000000e-06
GCST007121_2Multiple sclerosis and C-reactive protein levels (pleiotropy)3.000000e-06
GCST007124_1Multiple sclerosis and HDL levels (pleiotropy)4.000000e-06
GCST009310_30Sensorimotor dexterity4.000000e-07
GCST010732_1Sensory peripheral neuropathy in microtubule targeting agent-treated breast cancer4.000000e-07
GCST90002388_615Lymphocyte count2.000000e-10
GCST90002388_616Lymphocyte count2.000000e-17
GCST90002388_617Lymphocyte count2.000000e-12
GCST90002388_618Lymphocyte count9.000000e-21
GCST90002389_63Lymphocyte percentage of white cells3.000000e-14
GCST90002389_64Lymphocyte percentage of white cells6.000000e-17

EFO canonical traits (6, from GWAS)

EFO IDTrait name
EFO:0004587lymphocyte count
EFO:0004458C-reactive protein measurement
EFO:0004612high density lipoprotein cholesterol measurement
EFO:0008354cognitive function measurement
EFO:0005260response to antimicrotubule agent
EFO:0007993lymphocyte percentage of leukocytes

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (2): CHEMBL2363041 (PROTEIN FAMILY), CHEMBL4333 (SINGLE PROTEIN)

Molecules with ChEMBL bioactivity

13 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 27,325 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL1096146PONESIMOD4672
CHEMBL2336071SIPONIMOD41,508
CHEMBL314854FINGOLIMOD416,015
CHEMBL3358920ETRASIMOD4817
CHEMBL3707247OZANIMOD41,588
CHEMBL544665FINGOLIMOD HYDROCHLORIDE41,671
CHEMBL4297505CENERIMOD3244
CHEMBL3707375AMISELIMOD2399
CHEMBL405355NIGULDIPINE21,802
CHEMBL4097139ICANBELIMOD241
CHEMBL46874PINAFIDE22,444
CHEMBL4297350ASP-4058124
CHEMBL4297542GSK-20186821100

PharmGKB: 1 entry (VIP=true, CPIC=false)

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: gpcr — Lysophospholipid (S1P) receptors

Most potent curated ligand interactions (35 total), top 25:

LigandActionAffinityParameter
RP-001Agonist11.05pEC50
amiselimod phosphateAgonist10.12pEC50
siponimodAgonist10.11pEC50
RP-101075Agonist9.57pEC50
fingolimod-phosphateAgonist9.5pEC50
ozanimodAgonist9.48pEC50
NIBR-0213Antagonist9.43pKd
sphingosine 1-phosphateAgonist9.41pKd
etrasimodAgonist9.24pEC50
BMS-986166Partial agonist9.22pEC50
compound 26 [PMID: 16190743]Agonist9.22pIC50
mocravimod-phosphateAgonist9.07pEC50
cenerimodAgonist9.0pEC50
AUY954Agonist8.92pEC50
CYM5442Agonist8.91pEC50
AFD(R)Agonist8.8pEC50
compound 43 [PMID: 26751273]Agonist8.8pEC50
BMS-986104 derivative 12Biased agonist8.68pEC50
BMS-986104 derivative 24Biased agonist8.68pEC50
CYM5181Agonist8.47pEC50
ASP4058Agonist8.13pIC50
ponesimodAgonist8.04pEC50
icanbelimodAgonist8.01pEC50
SAR247799Biased agonist7.9pEC50
VPC23019Antagonist7.86pKi

Binding affinities (BindingDB)

1428 measured of 1692 human assays (1705 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
(E)-3-amino-2-[2-[[5-[(4-chlorobenzyl)thio]-1,3,4-thiadiazol-2-yl]thio]acetyl]but-2-enenitrileEC500.00314 nM
1-Phenylbenzimidazole deriv. 76EC500.00399 nM
3-(4-ethoxy-3-methoxy-phenyl)-5-(3-pyridyl)-1,2,4-oxadiazoleEC500.0571 nM
3-(3-methyl-4-{5-[4-(propan-2-yloxy)-3-(trifluoromethyl)phenyl]-1,2,4-oxadiazol-3-yl}phenyl)propanoic acidEC500.08 nM
3-(4-{5-[3-cyano-4-(propan-2-yloxy)phenyl]-1,2,4-oxadiazol-3-yl}-3-methylphenyl)propanoic acidEC500.08 nM
3-[[5-chloro-2-[[(1R)-1-(4-chloro-3-methylphenyl)propyl]amino]-4-pyridinyl]methylamino]propanoic acidIC500.1 nMUS-8791100: Aryl benzylamine compounds
1-[[5-[[(1S)-1-(4-chloro-3-methylphenyl)-2,2,2-trifluoroethyl]amino]-2-methylphenyl]methyl]azetidine-3-carboxylic acidIC500.1 nMUS-8791100: Aryl benzylamine compounds
1-[[5-[[(1S)-1-(4-chloro-3-methylphenyl)-2,2,2-trifluoroethyl]amino]-2-fluorophenyl]methyl]azetidine-3-carboxylic acidIC500.1 nMUS-8791100: Aryl benzylamine compounds
1-[[4-[5-[1-cyclohexyl-5-(2-methoxyethyl)pyrazol-4-yl]-1,2,4-oxadiazol-3-yl]phenyl]methyl]azetidine-3-carboxylic acidKI0.1 nMUS-8802663: Pyrazole oxadiazole derivatives as S1P1 agonists
N-[(2S)-3-[2-ethyl-6-methyl-4-[5-[2-methyl-6-(2-methylpropyl)-4-pyridinyl]-1,2,4-oxadiazol-3-yl]phenoxy]-2-hydroxypropyl]-2-hydroxyacetamideEC500.1 nMUS-9617250: Pyridin-4-yl derivatives
N-[(2S)-3-[4-[5-(2-cyclopentyl-4-pyridinyl)-1,2,4-oxadiazol-3-yl]-2-ethyl-6-methylphenoxy]-2-hydroxypropyl]-2-hydroxyacetamideEC500.1 nMUS-9617250: Pyridin-4-yl derivatives
N-[(2S)-3-[2-ethyl-6-methyl-4-[5-(2-pentan-3-yl-4-pyridinyl)-1,2,4-oxadiazol-3-yl]phenoxy]-2-hydroxypropyl]-2-hydroxyacetamideEC500.1 nMUS-9617250: Pyridin-4-yl derivatives
methyl 2-[7-[[4-cyclopentyl-3-(trifluoromethyl)phenyl]methoxy]-1,2,3,4-tetrahydrocyclopenta[b]indol-3-yl]acetateEC500.102 nMUS-9175320: Processes for the preparation of (R)-2-(7-4-cyclopentyl-3-(trifluoromethyl)benzyloxy)-1,2,3,4-tetrahydrocyclopenta[B]indol-3-yl)acetic acid and salts thereof
(2S)-3-[4-[5-[2-[1-(4-fluorophenyl)cyclohexyl]ethyl]-1,2,4-oxadiazol-3-yl]-2,6-dimethylphenoxy]propane-1,2-diolIC500.12 nMUS-8822510: Substituted 3-phenyl-1,2,4-Oxadiazole compounds
3-(3-methyl-4-{5-[4-(propan-2-yloxy)-3-(trifluoromethyl)phenyl]-1,2,4-oxadiazol-3-yl}phenyl)butanoic acidEC500.12 nM
1-[[5-[1-(4-chloro-3-methylphenyl)propylamino]-2-methylphenyl]methyl]azetidine-3-carboxylic acidIC500.2 nMUS-8791100: Aryl benzylamine compounds
1-[[2-chloro-5-[[(1S)-1-(4-chloro-3-methylphenyl)-2,2,2-trifluoroethyl]amino]phenyl]methyl]-3-methylazetidine-3-carboxylic acidIC500.2 nMUS-8791100: Aryl benzylamine compounds
BDBM50165434EC500.2 nMUS-9617250: Pyridin-4-yl derivatives
N-[(2S)-3-[4-[5-(2-cyclopentyl-6-methyl-4-pyridinyl)-1,2,4-oxadiazol-3-yl]-2-ethyl-6-methylphenoxy]-2-hydroxypropyl]-2-hydroxyacetamideEC500.2 nMUS-9617250: Pyridin-4-yl derivatives
N-[(2S)-3-[2-ethyl-6-methyl-4-[5-[2-(2-methylpropyl)-4-pyridinyl]-1,2,4-oxadiazol-3-yl]phenoxy]-2-hydroxypropyl]-2-hydroxyacetamideEC500.2 nMUS-9617250: Pyridin-4-yl derivatives
1-[[4-[5-[2-[1-(4-fluorophenyl)cyclohexyl]ethyl]-1,2,4-oxadiazol-3-yl]phenyl]methyl]azetidine-3-carboxylic acidIC500.21 nMUS-8822510: Substituted 3-phenyl-1,2,4-Oxadiazole compounds
(1S,2S)-2-(3-methyl-4-{5-[4-(propan-2-yloxy)-3-(trifluoromethyl)phenyl]-1,2,4-oxadiazol-3-yl}phenyl)cyclopropane-1-carboxylic acidEC500.21 nM
3-[7-[5-[3-(methoxymethyl)-4-(2-methylphenyl)phenyl]-1,2,4-oxadiazol-3-yl]-3,4-dihydro-1H-isoquinolin-2-yl]propanoic acidKI0.23 nMUS-8741923: Oxadiazole fused heterocyclic derivatives useful for the treatment of multiple sclerosis
3-[[2-hydroxy-2-[4-[5-[3-phenyl-4-(trifluoromethyl)-1,2-oxazol-5-yl]-1,2,4-oxadiazol-3-yl]phenyl]acetyl]amino]-N,N-dimethylpropanamideIC500.3 nMUS-8835470: Mandelamide heterocyclic compounds
2-methyl-3-(3-methyl-4-{5-[4-(propan-2-yloxy)-3-(trifluoromethyl)phenyl]-1,2,4-oxadiazol-3-yl}phenyl)propanoic acidEC500.3 nM
N-[(2S)-3-[2-ethyl-4-[5-(2-ethyl-6-methyl-4-pyridinyl)-1,2,4-oxadiazol-3-yl]-6-methylphenoxy]-2-hydroxypropyl]-2-hydroxyacetamideEC500.3 nMUS-9617250: Pyridin-4-yl derivatives
N-[(2S)-3-[2-ethyl-6-methyl-4-[5-(2-propan-2-yl-4-pyridinyl)-1,2,4-oxadiazol-3-yl]phenoxy]-2-hydroxypropyl]-2-hydroxyacetamideEC500.3 nMUS-9617250: Pyridin-4-yl derivatives
1-[[4-[5-[[1-(4-fluorophenyl)cyclohexyl]methoxymethyl]-1,2,4-oxadiazol-3-yl]phenyl]methyl]azetidine-3-carboxylic acidIC500.31 nMUS-8822510: Substituted 3-phenyl-1,2,4-Oxadiazole compounds
1-[[3-[3-phenyl-4-(trifluoromethyl)-1,2-oxazol-5-yl]-4H-chromeno[4,3-c][1,2]oxazol-7-yl]methyl]azetidine-3-carboxylic acidEC500.32 nMUS-9216972: Tricyclic heterocyclic compounds
1-[[3-[1-(4-chloro-3-methylphenyl)propylamino]-5-methylphenyl]methyl]azetidine-3-carboxylic acidIC500.4 nMUS-8791100: Aryl benzylamine compounds
(3R)-1-[[2-chloro-5-[[(1S)-1-(4-chloro-3-methylphenyl)-2,2,2-trifluoroethyl]amino]phenyl]methyl]pyrrolidine-3-carboxylic acidIC500.4 nMUS-8791100: Aryl benzylamine compounds
3-[[3-[[(1S)-1-(4-chloro-3-methylphenyl)-2,2,2-trifluoroethyl]amino]-2,6-dimethylphenyl]methylamino]propanoic acidIC500.4 nMUS-8791100: Aryl benzylamine compounds
(3R)-1-[[5-chloro-2-[[(1S)-1-(4-chloro-3-methylphenyl)-2,2,2-trifluoroethyl]amino]-4-pyridinyl]methyl]pyrrolidine-3-carboxylic acidIC500.4 nMUS-8791100: Aryl benzylamine compounds
[2-amino-7-[5-[4-propan-2-yloxy-3-(trifluoromethyl)phenyl]-1,3,4-oxadiazol-2-yl]-3,4-dihydro-1H-naphthalen-2-yl]methanolIC500.4 nMUS-9315492: Heterocyclic group contained amino-methanol derivative, and salt, synthetic method and use thereof
[2-amino-7-[5-(3-methyl-4-propan-2-yloxyphenyl)-3H-1,2,4-triazol-3-yl]-3,4-dihydro-1H-naphthalen-2-yl]methanolIC500.4 nMUS-9315492: Heterocyclic group contained amino-methanol derivative, and salt, synthetic method and use thereof
1-({4-[5-(4-cyclopentylphenyl)-1,2,4-oxadiazol-3-yl]phenyl}methyl)azetidine-3-carboxylic acidIC500.4 nM
1-[(4-{5-[4-(3,3,3-trifluoropropyl)phenyl]-1,2,4-oxadiazol-3-yl}phenyl)methyl]azetidine-3-carboxylic acidIC500.4 nM
N-[(2S)-3-[2-ethyl-6-methyl-4-[5-(2-methyl-6-propyl-4-pyridinyl)-1,2,4-oxadiazol-3-yl]phenoxy]-2-hydroxypropyl]-2-hydroxyacetamideEC500.4 nMUS-9617250: Pyridin-4-yl derivatives
3-(5-{5-[3-cyano-4-(propan-2-yloxy)phenyl]-1,2,4-oxadiazol-3-yl}-6-methylpyridin-2-yl)propanoic acidEC500.44 nM
(1S,2S)-2-(4-{5-[3-cyano-4-(propan-2-yloxy)phenyl]-1,2,4-oxadiazol-3-yl}-3-methylphenyl)cyclopropane-1-carboxylic acidEC500.45 nM
N-(2-hydroxy-2-methylpropyl)-3-[[2-hydroxy-2-[4-[5-[3-phenyl-4-(trifluoromethyl)-1,2-oxazol-5-yl]-1,2,4-oxadiazol-3-yl]phenyl]acetyl]amino]propanamideIC500.46 nMUS-8835470: Mandelamide heterocyclic compounds
1-[[4-[5-[3-[1-(4-fluorophenyl)cyclohexyl]propyl]-1,2,4-oxadiazol-3-yl]phenyl]methyl]azetidine-3-carboxylic acidIC500.47 nMUS-8822510: Substituted 3-phenyl-1,2,4-Oxadiazole compounds
2-[7-[5-[4-(2-methylphenyl)-3-(trifluoromethyl)phenyl]-1,2,4-oxadiazol-3-yl]-3,4-dihydro-1H-isoquinolin-2-yl]acetic acidKI0.49 nMUS-8741923: Oxadiazole fused heterocyclic derivatives useful for the treatment of multiple sclerosis
1-[1-[3-[[(1R)-1-(4-chloro-3-methylphenyl)propyl]amino]phenyl]ethyl]azetidine-3-carboxylic acidIC500.5 nMUS-8791100: Aryl benzylamine compounds
(3R)-1-[[5-chloro-2-[[(1R)-1-(4-chloro-3-methylphenyl)propyl]amino]-4-pyridinyl]methyl]pyrrolidine-3-carboxylic acidIC500.5 nMUS-8791100: Aryl benzylamine compounds
1-[[4-[5-[3-[1-(4-chlorophenyl)cyclohexyl]propyl]-1,2,4-oxadiazol-3-yl]phenyl]methyl]azetidine-3-carboxylic acidIC500.54 nMUS-8822510: Substituted 3-phenyl-1,2,4-Oxadiazole compounds
1-[[3-[5-phenyl-4-(trifluoromethyl)-1,2-oxazol-3-yl]-4,5-dihydrobenzo[g][2,1]benzoxazol-7-yl]methyl]azetidine-3-carboxylic acidEC500.59 nMUS-9216972: Tricyclic heterocyclic compounds
3-[7-[5-[4-(2-methylphenyl)-3-(trifluoromethyl)phenyl]-1,2,4-oxadiazol-3-yl]-3,4-dihydro-1H-isoquinolin-2-yl]propanoic acidKI0.6 nMUS-8741923: Oxadiazole fused heterocyclic derivatives useful for the treatment of multiple sclerosis
1-[[3-[[(1R)-1-(4-chloro-3-methylphenyl)propyl]amino]-2,6-dimethylphenyl]methyl]azetidine-3-carboxylic acidIC500.6 nMUS-8791100: Aryl benzylamine compounds
1-[[5-chloro-2-[[(1R)-1-(4-chloro-3-methylphenyl)propyl]amino]-4-pyridinyl]methyl]azetidine-3-carboxylic acidIC500.6 nMUS-8791100: Aryl benzylamine compounds

ChEMBL bioactivities

4274 potent at pChembl≥5 of 4427 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
11.00EC500.01nMCHEMBL2032300
11.00IC500.01nMCHEMBL3403631
11.00IC500.01nMCHEMBL3806205
10.92EC500.012nMFTY720-P
10.90EC500.01259nMCHEMBL2018176
10.85IC500.014nMCHEMBL114606
10.85IC500.014nMCHEMBL4637401
10.80EC500.01585nMCHEMBL2059683
10.80IC500.016nMCHEMBL4752394
10.74EC500.018nMCHEMBL1093686
10.70EC500.01995nMCHEMBL2059684
10.70EC500.02nMCHEMBL114606
10.70EC500.02nMFTY720-P
10.68EC500.021nMCHEMBL3359523
10.60EC500.02512nMCHEMBL2032301
10.60EC500.025nMCHEMBL3359522
10.57EC500.027nMCHEMBL4093489
10.57EC500.027nMCHEMBL225155
10.56EC500.02754nMCHEMBL4093489
10.52EC500.03nMCHEMBL3403619
10.52EC500.03nMCHEMBL378436
10.50EC500.03162nMCHEMBL2018320
10.50EC500.03162nMCHEMBL2032428
10.50EC500.03162nMCHEMBL2032430
10.49EC500.032nMCHEMBL3959509
10.40EC500.03981nMCHEMBL2011746
10.40EC500.03981nMCHEMBL2018321
10.40EC500.04nMETRASIMOD
10.40EC500.04nMCHEMBL3400910
10.40EC500.04nMCHEMBL3400909
10.40EC500.04nMCHEMBL3403630
10.40EC500.04nMCHEMBL3403631
10.40EC500.04nMCHEMBL3403632
10.40IC500.04nMCHEMBL4786296
10.39EC500.041nMCHEMBL3358955
10.30EC500.05012nMCHEMBL2018319
10.30EC500.05nMCHEMBL3926787
10.30EC500.05nMCHEMBL3924073
10.30EC500.05nMCHEMBL3896496
10.30EC500.05nMCHEMBL3984513
10.30EC500.05nMCHEMBL3944842
10.30EC500.05nMCHEMBL3926299
10.30EC500.05nMCHEMBL3954097
10.30EC500.05nMCHEMBL3916821
10.30EC500.05nMCHEMBL3970830
10.30EC500.05nMCHEMBL3979740
10.30EC500.05nMCHEMBL3939008
10.30EC500.05nMCHEMBL3940245
10.30EC500.05nMCHEMBL3895822
10.30EC500.05nMCHEMBL3918031

PubChem BioAssay actives

2344 with measured affinity, of 3485 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
[(2S)-2-amino-2-(hydroxymethyl)-4-(4-octylphenyl)butyl] dihydrogen phosphate1176592: Agonist activity at human S1P1 receptor assessed as cAMP accumulation by HTRF assayec50<0.0001uM
1-[[6-[(2-methoxy-4-propylphenyl)methoxy]-1-methyl-3,4-dihydronaphthalen-2-yl]methyl]azetidine-3-carboxylic acid1477093: Agonist activity at human S1P1 receptor expressed in CHO-K1 cells assessed as inhibition of forskolin-stimulated cAMP accumulation after 30 mins by ELISAec50<0.0001uM
[(1R,3S)-1-amino-3-[(6S)-6-[2-(2-methoxyphenyl)ethyl]-5,6,7,8-tetrahydronaphthalen-2-yl]cyclopentyl]methyl dihydrogen phosphate1735816: Displacement of [33P]-SIP from human recombinant S1P1 expressed in CHO cell membranes measured after 45 mins by radioligand competitive binding analysisic50<0.0001uM
[(1R,3S)-1-amino-3-[(6R)-6-(3-ethoxypropyl)-5,6,7,8-tetrahydronaphthalen-2-yl]cyclopentyl]methyl dihydrogen phosphate1730770: Displacement of [33P]-SIP from human recombinant S1P1 expressed in CHO cell membranes measured after 45 mins by TopCount scintillation counting methodic50<0.0001uM
[(1R,3S)-1-amino-3-[(6R)-6-(5-methoxypentyl)-5,6,7,8-tetrahydronaphthalen-2-yl]cyclopentyl]methyl dihydrogen phosphate1730770: Displacement of [33P]-SIP from human recombinant S1P1 expressed in CHO cell membranes measured after 45 mins by TopCount scintillation counting methodic50<0.0001uM
3-[4-[5-(3-chloro-4-propan-2-yloxyphenyl)-1,2,4-oxadiazol-3-yl]indol-1-yl]propanoic acid662678: Agonist activity at SIP1 receptor by tango assayec50<0.0001uM
3-[4-[5-[3-cyano-4-(1,1,1-trifluoropropan-2-yloxy)phenyl]-1,2,4-oxadiazol-3-yl]-3-methylphenyl]propanoic acid268302: Agonist activity at S1P1 receptor expressed in CHO cells measured as S1P-induced [35S]GTP-gamma-S uptakeec50<0.0001uM
3-[7-[5-(3-chloro-4-propan-2-yloxyphenyl)-1,2,4-oxadiazol-3-yl]-1H-indol-3-yl]propanoic acid656694: Agonist activity at S1P1 receptor by Tango assayec50<0.0001uM
3-[7-[5-(3-chloro-4-propan-2-yloxyphenyl)-1,2,4-oxadiazol-3-yl]-1-methylindol-3-yl]propanoic acid656694: Agonist activity at S1P1 receptor by Tango assayec50<0.0001uM
3-[7-[5-(3-chloro-4-propan-2-yloxyphenyl)-1,2,4-oxadiazol-3-yl]-4-fluoro-1-methylindol-3-yl]propanoic acid656694: Agonist activity at S1P1 receptor by Tango assayec50<0.0001uM
Etrasimod1176592: Agonist activity at human S1P1 receptor assessed as cAMP accumulation by HTRF assayec50<0.0001uM
2-[6-[[4-cyclopentyl-3-(trifluoromethyl)phenyl]methoxy]-2,3-dihydro-1H-pyrrolo[1,2-a]indol-3-yl]acetic acid1176728: Agonist activity at human S1P1 receptor assessed as cAMP accumulation by HTRF assayec50<0.0001uM
[(2R)-2-amino-2-[(2S)-6-octyl-1,2,3,4-tetrahydronaphthalen-2-yl]propyl] dihydrogen phosphate473717: Agonist activity at human S1P1 receptor assessed as effect on calcium mobilization by Gi dependent whole cell assayec50<0.0001uM
2-[6-[[4-cyclopentyl-3-(trifluoromethyl)phenyl]methoxy]-2,3,4,9-tetrahydro-1H-pyrido[3,4-b]indol-1-yl]acetic acid1192396: Agonist activity at human S1P1 receptor assessed as change in cAMP level by homogeneous time resolved fluorescence cyclase assayec50<0.0001uM
2-[6-[(3-cyano-4-propan-2-yloxyphenyl)methoxy]-2,3,4,9-tetrahydro-1H-pyrido[3,4-b]indol-1-yl]acetic acid1192396: Agonist activity at human S1P1 receptor assessed as change in cAMP level by homogeneous time resolved fluorescence cyclase assayec50<0.0001uM
2-[6-[[4-(2-methylpropyl)-3-(trifluoromethyl)phenyl]methoxy]-2,3,4,9-tetrahydro-1H-pyrido[3,4-b]indol-1-yl]acetic acid1192396: Agonist activity at human S1P1 receptor assessed as change in cAMP level by homogeneous time resolved fluorescence cyclase assayec50<0.0001uM
2-[10-chloro-8-[[4-cyclopentyl-3-(trifluoromethyl)phenyl]methoxy]-3,4-dihydro-1H-[1,4]oxazino[4,3-a]indol-1-yl]acetic acid1192396: Agonist activity at human S1P1 receptor assessed as change in cAMP level by homogeneous time resolved fluorescence cyclase assayec50<0.0001uM
2-[10-chloro-8-[[4-propan-2-yloxy-3-(trifluoromethyl)phenyl]methoxy]-3,4-dihydro-1H-[1,4]oxazino[4,3-a]indol-1-yl]acetic acid1192396: Agonist activity at human S1P1 receptor assessed as change in cAMP level by homogeneous time resolved fluorescence cyclase assayec50<0.0001uM
2-[10-chloro-8-[(3-cyano-4-propan-2-yloxyphenyl)methoxy]-3,4-dihydro-1H-[1,4]oxazino[4,3-a]indol-1-yl]acetic acid1192396: Agonist activity at human S1P1 receptor assessed as change in cAMP level by homogeneous time resolved fluorescence cyclase assayec50<0.0001uM
3-[[4-[5-(3-cyano-4-propan-2-yloxyphenyl)-1,2,4-oxadiazol-3-yl]-2,3-dihydro-1H-inden-1-yl]amino]propanoic acid2033333: Modulation of S1PR1 (unknown origin)ec50<0.0001uM
[(E,2S,3R)-2-amino-3-hydroxyoctadec-4-enyl] dihydrogen phosphate473717: Agonist activity at human S1P1 receptor assessed as effect on calcium mobilization by Gi dependent whole cell assayec50<0.0001uM
1-[[3-[3-phenyl-4-(trifluoromethyl)-1,2-oxazol-5-yl]-4,5-dihydrobenzo[g][2,1]benzoxazol-7-yl]methyl]azetidine-3-carboxylic acid1686123: Agonist activity at human S1P1 assessed as stimulation of cAMP accumulationec50<0.0001uM
2-[(3R)-4-chloro-6-[[4-propan-2-yloxy-3-(trifluoromethyl)phenyl]methoxy]-2,3-dihydro-1H-pyrrolo[1,2-a]indol-3-yl]acetic acid1176728: Agonist activity at human S1P1 receptor assessed as cAMP accumulation by HTRF assayec50<0.0001uM
2-[2-[2-ethyl-3-[5-[4-propan-2-yloxy-3-(trifluoromethyl)phenyl]-1,2,4-thiadiazol-3-yl]phenyl]ethylamino]acetic acid672824: Agonist activity against S1P1 receptor by cell based FRET assayec50<0.0001uM
2-[2-[2-ethyl-3-[5-[4-propan-2-yloxy-3-(trifluoromethyl)phenyl]-1,2,4-thiadiazol-3-yl]phenyl]ethyl-methylamino]acetic acid672824: Agonist activity against S1P1 receptor by cell based FRET assayec50<0.0001uM
3-[7-[5-(3-chloro-4-propan-2-yloxyphenyl)-1,2,4-oxadiazol-3-yl]-5-fluoro-1-methylindol-3-yl]propanoic acid656694: Agonist activity at S1P1 receptor by Tango assayec50<0.0001uM
2-[(3R)-4-chloro-6-[(3-cyano-4-propan-2-yloxyphenyl)methoxy]-2,3-dihydro-1H-pyrrolo[1,2-a]indol-3-yl]acetic acid1176728: Agonist activity at human S1P1 receptor assessed as cAMP accumulation by HTRF assayec50<0.0001uM
3-[7-[5-(3-chloro-4-propan-2-yloxyphenyl)-1,2,4-oxadiazol-3-yl]-1H-indol-3-yl]propanamide656694: Agonist activity at S1P1 receptor by Tango assayec50<0.0001uM
3-[2-[2-[4-phenyl-3-(trifluoromethyl)phenyl]-1,3-benzoxazol-5-yl]ethylamino]propanoic acid662678: Agonist activity at SIP1 receptor by tango assayec50<0.0001uM
3-[7-[5-(3-chloro-4-propan-2-yloxyphenyl)-1,2,4-oxadiazol-3-yl]-1H-indol-3-yl]-N-methylpropanamide656694: Agonist activity at S1P1 receptor by Tango assayec50<0.0001uM
2-[3-[2-[4-phenyl-3-(trifluoromethyl)phenyl]-1,3-benzoxazol-5-yl]propylamino]acetic acid662678: Agonist activity at SIP1 receptor by tango assayec50<0.0001uM
3-[4-[5-[butyl-[4-(trifluoromethyl)benzoyl]amino]-1,3,4-thiadiazol-2-yl]indol-1-yl]propanoic acid652657: Agonist activity at human S1P1 receptor expressed in human U2OS cells assessed as beta-arrestin-mediated receptor internalization by beta-lactamase reporter assayec50<0.0001uM
3-[3-chloro-4-[5-(3-chloro-4-propan-2-yloxyphenyl)-1,2,4-oxadiazol-3-yl]indol-1-yl]propanoic acid662678: Agonist activity at SIP1 receptor by tango assayec50<0.0001uM
[(1R,3S)-1-amino-3-[(6R)-6-hexyl-5,6,7,8-tetrahydronaphthalen-2-yl]cyclopentyl]methyl dihydrogen phosphate1300062: Displacement of 33-P-S1P from from human S1P receptor expressed in CHO cell membranes after 50 mins by scintillation countingic50<0.0001uM
[2-amino-2-(hydroxymethyl)-4-(4-octylphenyl)butyl] dihydrogen phosphate1300062: Displacement of 33-P-S1P from from human S1P receptor expressed in CHO cell membranes after 50 mins by scintillation countingic50<0.0001uM
[(1R,3R)-3-amino-1-hydroxy-5-(4-octylphenyl)pentyl]phosphonic acid1474269: Displacement of [33P]-S1P from human S1P1 receptor expressed in CHO cell membranesic500.0001uM
[(2R)-2-amino-2-(hydroxymethyl)-4-(4-octylphenyl)butyl] dihydrogen phosphate466802: Agonist activity at human S1P1 receptor expressed in CHO cells assessed as induction of [S35]GTPgammaS bindingec500.0001uM
3-[3-methyl-4-[5-[4-propan-2-yloxy-3-(trifluoromethyl)phenyl]-1,2,4-oxadiazol-3-yl]phenyl]butanoic acid1798174: Ligand-Induced Uptake of [35S]-GTP-gamma-S from Article 10.1016/j.bmcl.2006.10.057: “SAR studies of 3-arylpropionic acids as potent and selective agonists of sphingosine-1-phosphate receptor-1 (S1P1) with enhanced pharmacokinetic properties.”ec500.0001uM
3-[4-[5-(3-bromo-4-propan-2-yloxyphenyl)-1,2,4-oxadiazol-3-yl]-3-methylphenyl]propanoic acid268302: Agonist activity at S1P1 receptor expressed in CHO cells measured as S1P-induced [35S]GTP-gamma-S uptakeec500.0001uM
3-[4-[5-(3-chloro-4-propan-2-yloxyphenyl)-1,2,4-oxadiazol-3-yl]-3-methylphenyl]propanoic acid268555: Agonist activity at S1P1 receptor assessed as induction of [35S]GTP-gamma-S bindingec500.0001uM
1-[[6-[(2-methoxy-4-propylphenyl)methoxy]-1,5-dimethyl-3,4-dihydronaphthalen-2-yl]methyl]azetidine-3-carboxylic acid1477093: Agonist activity at human S1P1 receptor expressed in CHO-K1 cells assessed as inhibition of forskolin-stimulated cAMP accumulation after 30 mins by ELISAec500.0001uM
3-[4-[5-[5-chloro-6-(1,1,1-trifluoropropan-2-yloxy)-3-pyridinyl]-1,2,4-oxadiazol-3-yl]-3-methylphenyl]propanoic acid268302: Agonist activity at S1P1 receptor expressed in CHO cells measured as S1P-induced [35S]GTP-gamma-S uptakeec500.0001uM
3-[4-[5-(3-cyano-4-propan-2-yloxyphenyl)-1,2,4-oxadiazol-3-yl]-3-methylphenyl]propanoic acid1798174: Ligand-Induced Uptake of [35S]-GTP-gamma-S from Article 10.1016/j.bmcl.2006.10.057: “SAR studies of 3-arylpropionic acids as potent and selective agonists of sphingosine-1-phosphate receptor-1 (S1P1) with enhanced pharmacokinetic properties.”ec500.0001uM
5-[3-[4-[(2R)-2-amino-3-hydroxypropoxy]-2-chloro-5-fluorophenyl]-1,2,4-oxadiazol-5-yl]-2-propan-2-yloxybenzonitrile1271835: Agonist activity at human S1P1 receptor expressed in EDG1-bla U2OS cells incubated for 18 hrs prior to GenBlazer substrate addition by beta-arrestin recruitment assayec500.0001uM
3-[[2-hydroxy-2-[4-[5-(5-phenyl-4-propyl-1,2-oxazol-3-yl)-1,2,4-oxadiazol-3-yl]phenyl]ethyl]amino]propanoic acid1626256: Displacement of [33P]S1P from human S1P1 expressed in CHO cell membranes measured after 45 mins by TopCount methodic500.0001uM
3-[4-[5-[3-cyano-4-(2,2,2-trifluoroethoxy)phenyl]-1,2,4-oxadiazol-3-yl]-3-methylphenyl]propanoic acid268302: Agonist activity at S1P1 receptor expressed in CHO cells measured as S1P-induced [35S]GTP-gamma-S uptakeec500.0001uM
2-amino-2-[2-[4-heptoxy-3-(trifluoromethyl)phenyl]ethyl]propane-1,3-diol2033333: Modulation of S1PR1 (unknown origin)ec500.0001uM
3-[3-methyl-4-[5-[4-propan-2-yloxy-3-(trifluoromethyl)phenyl]-1,2,4-oxadiazol-3-yl]phenyl]propanoic acid1798174: Ligand-Induced Uptake of [35S]-GTP-gamma-S from Article 10.1016/j.bmcl.2006.10.057: “SAR studies of 3-arylpropionic acids as potent and selective agonists of sphingosine-1-phosphate receptor-1 (S1P1) with enhanced pharmacokinetic properties.”ec500.0001uM
[2-amino-3-hydroxy-2-[(2R)-6-octyl-1,2,3,4-tetrahydronaphthalen-2-yl]propyl] dihydrogen phosphate473717: Agonist activity at human S1P1 receptor assessed as effect on calcium mobilization by Gi dependent whole cell assayec500.0001uM
[(2R)-2-amino-2-[(2R)-6-octyl-1,2,3,4-tetrahydronaphthalen-2-yl]propyl] dihydrogen phosphate473717: Agonist activity at human S1P1 receptor assessed as effect on calcium mobilization by Gi dependent whole cell assayec500.0001uM

CTD chemical–gene interactions

54 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
sodium arseniteincreases abundance, affects reaction, increases activity, increases expression, decreases expression (+1 more)4
Valproic Aciddecreases expression, increases expression4
sphingosine 1-phosphateaffects binding, affects reaction, increases expression3
Arsenicaffects expression, increases methylation, affects cotreatment, increases abundance, increases expression3
trichostatin Aaffects expression, decreases expression, affects cotreatment2
nickel sulfateaffects cotreatment, decreases expression2
Fingolimod Hydrochloridedecreases reaction, increases expression, affects binding, decreases expression, decreases activity2
Benzo(a)pyrenedecreases methylation, increases expression2
Aflatoxin B1affects expression, decreases expression2
triphenyl phosphateaffects expression1
kaempferoldecreases expression, decreases reaction1
tryptoquivalinedecreases reaction, increases secretion1
2-methyl-4-isothiazolin-3-oneincreases expression1
terbufosincreases methylation1
mono-(2-ethylhexyl)phthalateincreases expression1
cobaltous chloridedecreases expression1
manganese chlorideincreases abundance, increases expression, affects cotreatment1
ochratoxin Adecreases expression1
butylbenzyl phthalateincreases expression, increases secretion, affects reaction, decreases reaction1
S-(1,2-dichlorovinyl)cysteineaffects cotreatment, decreases expression, affects response to substance, increases expression1
diallyl trisulfideincreases expression1
di-n-butylphosphoric acidaffects expression1
perfluoro-n-nonanoic aciddecreases expression1
macrophage stimulatory lipopeptide 2affects cotreatment, decreases expression1
2-palmitoylglycerolincreases expression1
entinostatincreases expression1
lipopolysaccharide, Escherichia coli O111 B4decreases expression, decreases reaction1
abrinedecreases expression1
FTY 720Paffects binding1
(+)-JQ1 compounddecreases expression1

ChEMBL screening assays

385 unique, capped per target: 194 functional, 191 binding

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL1029035BindingDisplacement of [33P]sphingosine-1-phosphate from human S1P1 receptorSynthesis and evaluation of alkoxy-phenylamides and alkoxy-phenylimidazoles as potent sphingosine-1-phosphate receptor subtype-1 agonists. — Bioorg Med Chem Lett
CHEMBL1029040FunctionalAgonist activity at human S1P1 receptor assessed as stimulation of [35S]GTPgammaS bindingSynthesis and evaluation of alkoxy-phenylamides and alkoxy-phenylimidazoles as potent sphingosine-1-phosphate receptor subtype-1 agonists. — Bioorg Med Chem Lett

Cellosaurus cell lines

16 cell lines: 8 cancer cell line, 3 embryonic stem cell, 3 transformed cell line, 2 spontaneously immortalized cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_A6D6SEES3-1V human S1PR1, clone1Embryonic stem cellMale
CVCL_A6D7SEES3-1V human S1PR1, clone2Embryonic stem cellMale
CVCL_A6D8SEES3-1V human S1PR1, clone3Embryonic stem cellMale
CVCL_B2EKAbcam HeLa S1PR1 KOCancer cell lineFemale
CVCL_C0SLACTOne EDG1Transformed cell lineFemale
CVCL_D9R6Ubigene HEK293 S1PR1 KOTransformed cell lineFemale
CVCL_E0N5Ubigene HeLa S1PR1 KOCancer cell lineFemale
CVCL_E7C3Abcam SK-HEP-1 S1PR1 KOCancer cell lineMale
CVCL_KV12cAMP Hunter CHO-K1 EDG1 GiSpontaneously immortalized cell lineFemale
CVCL_KW92PathHunter CHO-K1 EDG1 beta-arrestinSpontaneously immortalized cell lineFemale

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.