SALL1-AS1

Summary

SALL1-AS1 (SALL1 antisense RNA 1, HGNC:58539) is a long non-coding RNA gene on chromosome 16q12.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58539
Approved symbol	SALL1-AS1
Name	SALL1 antisense RNA 1
Location	16q12.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000285367
Ensembl biotype	lncRNA
Entrez	142592811

Gene structure

Transcript identifiers

Ensembl transcripts: 28 — 28 lncRNA

ENST00000642450, ENST00000642667, ENST00000643626, ENST00000644069, ENST00000644192, ENST00000693621, ENST00000701109, ENST00000717477, ENST00000717478, ENST00000717479, ENST00000741847, ENST00000741848, ENST00000741849, ENST00000741850, ENST00000741851, ENST00000741852, ENST00000741853, ENST00000741854, ENST00000741855, ENST00000741856, ENST00000798752, ENST00000798753, ENST00000798754, ENST00000798755, ENST00000798756, ENST00000798757, ENST00000798758, ENST00000798759

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000642450 — 4 exons

Exon	Start	End
ENSE00003821986	51150770	51151063
ENSE00003825305	51312944	51314879
ENSE00003826049	51311570	51311648
ENSE00003829326	51188954	51189009

Expression profiles

Bgee: expression breadth broad, 98 present calls, max score 75.98.

Top tissues by expression

98 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	75.98	gold quality
corpus callosum	UBERON:0002336	75.60	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	67.49	gold quality
ectocervix	UBERON:0012249	66.25	gold quality
body of uterus	UBERON:0009853	66.01	gold quality
uterine cervix	UBERON:0000002	65.45	gold quality
smooth muscle tissue	UBERON:0001135	65.17	gold quality
substantia nigra	UBERON:0002038	64.39	gold quality
ventricular zone	UBERON:0003053	64.39	gold quality
stromal cell of endometrium	CL:0002255	64.30	gold quality
endocervix	UBERON:0000458	64.28	gold quality
myometrium	UBERON:0001296	63.64	gold quality
left uterine tube	UBERON:0001303	62.93	gold quality
endometrium	UBERON:0001295	61.93	gold quality
amygdala	UBERON:0001876	61.93	gold quality
putamen	UBERON:0001874	61.80	gold quality
kidney	UBERON:0002113	61.60	gold quality
Ammon’s horn	UBERON:0001954	60.63	gold quality
ganglionic eminence	UBERON:0004023	60.58	gold quality
adult mammalian kidney	UBERON:0000082	60.50	gold quality
caudate nucleus	UBERON:0001873	60.16	gold quality
liver	UBERON:0002107	59.80	gold quality
prefrontal cortex	UBERON:0000451	59.43	gold quality
right lobe of liver	UBERON:0001114	59.43	gold quality
fallopian tube	UBERON:0003889	59.35	gold quality
nucleus accumbens	UBERON:0001882	58.49	gold quality
cerebral cortex	UBERON:0000956	57.97	gold quality
frontal cortex	UBERON:0001870	57.97	gold quality
ovary	UBERON:0000992	57.96	gold quality
hypothalamus	UBERON:0001898	57.88	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	6.52

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.