SCAANT1

Summary

SCAANT1 (SCA7/ATXN7 antisense RNA 1, HGNC:43718) is a long non-coding RNA gene on chromosome 3p14.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:43718
Approved symbol	SCAANT1
Name	SCA7/ATXN7 antisense RNA 1
Location	3p14.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	ATXN7-AS1
Ensembl gene	ENSG00000280620
Ensembl biotype	lncRNA
OMIM	614481
Entrez	100861563
RNAcentral	URS0002853B03 — lncRNA, 872 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000626439

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000626439 — 1 exons

Exon	Start	End
ENSE00003767215	63911512	63912383

Expression profiles

Bgee: expression breadth ubiquitous, 127 present calls, max score 92.19.

Top tissues by expression

127 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	92.19	gold quality
sural nerve	UBERON:0015488	83.49	gold quality
ventricular zone	UBERON:0003053	75.67	gold quality
bone marrow cell	CL:0002092	74.90	gold quality
blood	UBERON:0000178	73.72	gold quality
mucosa of stomach	UBERON:0001199	73.48	gold quality
left testis	UBERON:0004533	73.18	gold quality
stromal cell of endometrium	CL:0002255	72.94	gold quality
testis	UBERON:0000473	72.67	gold quality
bone marrow	UBERON:0002371	72.17	gold quality
monocyte	CL:0000576	71.63	gold quality
lower esophagus mucosa	UBERON:0035834	71.61	gold quality
right testis	UBERON:0004534	71.41	gold quality
right uterine tube	UBERON:0001302	70.42	gold quality
muscle tissue	UBERON:0002385	69.92	gold quality
skeletal muscle tissue	UBERON:0001134	69.72	gold quality
right coronary artery	UBERON:0001625	69.70	gold quality
descending thoracic aorta	UBERON:0002345	69.47	gold quality
adrenal tissue	UBERON:0018303	67.89	gold quality
endometrium	UBERON:0001295	67.78	gold quality
prefrontal cortex	UBERON:0000451	67.61	gold quality
primary visual cortex	UBERON:0002436	67.12	gold quality
popliteal artery	UBERON:0002250	67.10	gold quality
tibial artery	UBERON:0007610	67.09	gold quality
myometrium	UBERON:0001296	66.97	gold quality
liver	UBERON:0002107	66.73	gold quality
tibial nerve	UBERON:0001323	66.71	gold quality
gall bladder	UBERON:0002110	66.67	gold quality
smooth muscle tissue	UBERON:0001135	66.66	gold quality
thoracic aorta	UBERON:0001515	66.50	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.67

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): CTCF

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.