SCAMP1-AS1

Summary

SCAMP1-AS1 (SCAMP1 antisense RNA 1, HGNC:50544) is a long non-coding RNA gene on chromosome 5q14.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50544
Approved symbol	SCAMP1-AS1
Name	SCAMP1 antisense RNA 1
Location	5q14.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000245556
Ensembl biotype	lncRNA
Entrez	728769
RNAcentral	URS000075A02D — lncRNA, 1550 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000421004, ENST00000513755, ENST00000665502, ENST00000812531, ENST00000812532

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000421004 — 2 exons

Exon	Start	End
ENSE00004211659	78358796	78359985
ENSE00004211660	78360214	78360532

Expression profiles

Bgee: expression breadth ubiquitous, 204 present calls, max score 90.99.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 3.9585 / max 91.3486, expressed in 1585 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
62204	3.9585	1585

Top tissues by expression

243 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
pancreatic ductal cell	CL:0002079	90.99	silver quality
epithelial cell of pancreas	CL:0000083	87.36	gold quality
endothelial cell	CL:0000115	87.29	silver quality
kidney epithelium	UBERON:0004819	86.66	silver quality
pigmented layer of retina	UBERON:0001782	85.63	gold quality
sperm	CL:0000019	83.93	silver quality
parotid gland	UBERON:0001831	83.57	silver quality
secondary oocyte	CL:0000655	81.78	gold quality
oocyte	CL:0000023	81.31	silver quality
palpebral conjunctiva	UBERON:0001812	81.13	gold quality
corpus epididymis	UBERON:0004359	79.80	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	79.73	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.48	gold quality
epithelium of mammary gland	UBERON:0003244	79.36	silver quality
mammary duct	UBERON:0001765	79.21	silver quality
spinal cord	UBERON:0002240	79.09	gold quality
nasal cavity epithelium	UBERON:0005384	79.09	gold quality
right adrenal gland	UBERON:0001233	78.77	gold quality
right adrenal gland cortex	UBERON:0035827	78.73	gold quality
left adrenal gland	UBERON:0001234	78.55	gold quality
left adrenal gland cortex	UBERON:0035825	78.46	gold quality
left lobe of thyroid gland	UBERON:0001120	78.29	gold quality
islet of Langerhans	UBERON:0000006	78.20	gold quality
bronchial epithelial cell	CL:0002328	78.18	silver quality
granulocyte	CL:0000094	78.17	gold quality
leukocyte	CL:0000738	78.16	gold quality
monocyte	CL:0000576	78.12	gold quality
thyroid gland	UBERON:0002046	78.09	gold quality
caput epididymis	UBERON:0004358	77.92	gold quality
adrenal cortex	UBERON:0001235	77.88	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.00

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• Knockdown of LncRNA SCAMP1 suppressed malignant biological behaviours of glioma cells via modulating miR-499a-5p/LMX1A/NLRC5 pathway. (PMID:31207033)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.