SCARNA11

Summary

SCARNA11 (small Cajal body-specific RNA 11, HGNC:32568) is a small Cajal body RNA gene on chromosome 12p13.31.

Predicted to be involved in RNA processing. Predicted to be located in Cajal body and nucleolus.

Source: NCBI Gene 677780 — RefSeq curated summary.

At a glance

• Gene type: non-coding (scaRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:32568
Approved symbol	SCARNA11
Name	small Cajal body-specific RNA 11
Location	12p13.31
Locus type	RNA, small nucleolar
Status	Approved
Aliases	ACA57
Ensembl gene	ENSG00000251898
Ensembl biotype	scaRNA
Entrez	677780
RNAcentral	URS00001B2620 — ncRNA, 137 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 scaRNA

ENST00000516089

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000516089 — 1 exons

Exon	Start	End
ENSE00002088366	6581474	6581609

Expression profiles

Bgee: expression breadth broad, 83 present calls, max score 99.42.

FANTOM5 (CAGE): breadth broad, TPM avg 0.4688 / max 27.9844, expressed in 237 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
129123	0.4688	237

Top tissues by expression

83 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	99.42	gold quality
adult mammalian kidney	UBERON:0000082	98.81	gold quality
kidney	UBERON:0002113	94.42	gold quality
adrenal tissue	UBERON:0018303	90.77	gold quality
liver	UBERON:0002107	89.73	gold quality
corpus callosum	UBERON:0002336	79.12	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	79.00	gold quality
stomach	UBERON:0000945	78.50	gold quality
lung	UBERON:0002048	75.40	gold quality
blood	UBERON:0000178	75.00	gold quality
monocyte	CL:0000576	72.70	gold quality
bone marrow	UBERON:0002371	72.13	gold quality
islet of Langerhans	UBERON:0000006	71.52	gold quality
heart	UBERON:0000948	71.48	gold quality
calcaneal tendon	UBERON:0003701	71.22	gold quality
muscle of leg	UBERON:0001383	71.12	gold quality
gastrocnemius	UBERON:0001388	70.83	gold quality
body of pancreas	UBERON:0001150	68.59	gold quality
endometrium	UBERON:0001295	68.56	gold quality
popliteal artery	UBERON:0002250	68.53	gold quality
intestine	UBERON:0000160	68.33	gold quality
tibial artery	UBERON:0007610	68.27	gold quality
right lobe of liver	UBERON:0001114	68.09	gold quality
left coronary artery	UBERON:0001626	68.00	gold quality
heart left ventricle	UBERON:0002084	66.62	gold quality
tibial nerve	UBERON:0001323	66.51	gold quality
colon	UBERON:0001155	66.30	gold quality
multicellular organism	UBERON:0000468	66.27	gold quality
thoracic aorta	UBERON:0001515	66.23	gold quality
ascending aorta	UBERON:0001496	65.91	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.22

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Paralogs (1): (ENSG00000253085)

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.