SCARNA14

Summary

SCARNA14 (small Cajal body-specific RNA 14, HGNC:32571) is a small Cajal body RNA gene on chromosome 15q22.31.

Predicted to be involved in RNA processing. Predicted to be located in Cajal body and nucleolus.

Source: NCBI Gene 692149 — RefSeq curated summary.

At a glance

• Gene type: non-coding (scaRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:32571
Approved symbol	SCARNA14
Name	small Cajal body-specific RNA 14
Location	15q22.31
Locus type	RNA, small nucleolar
Status	Approved
Aliases	U100
Ensembl gene	ENSG00000252712
Ensembl biotype	scaRNA
Entrez	692149
RNAcentral	URS0000180559 — ncRNA, 137 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 scaRNA

ENST00000516903

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000516903 — 1 exons

Exon	Start	End
ENSE00002089180	66347207	66347342

Expression profiles

Bgee: expression breadth broad, 72 present calls, max score 91.85.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0243 / max 3.9241, expressed in 4 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
150588	0.0243	4

Top tissues by expression

72 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	91.85	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	86.35	gold quality
liver	UBERON:0002107	82.19	gold quality
calcaneal tendon	UBERON:0003701	80.18	gold quality
adult mammalian kidney	UBERON:0000082	77.50	gold quality
monocyte	CL:0000576	76.98	gold quality
kidney	UBERON:0002113	76.07	gold quality
lung	UBERON:0002048	74.26	gold quality
heart	UBERON:0000948	74.16	gold quality
blood	UBERON:0000178	73.82	gold quality
adrenal tissue	UBERON:0018303	72.39	gold quality
bone marrow	UBERON:0002371	71.53	gold quality
endometrium	UBERON:0001295	71.13	gold quality
gastrocnemius	UBERON:0001388	70.98	gold quality
islet of Langerhans	UBERON:0000006	70.69	gold quality
vagina	UBERON:0000996	70.08	gold quality
stomach	UBERON:0000945	69.32	gold quality
intestine	UBERON:0000160	68.84	gold quality
tibial nerve	UBERON:0001323	68.71	gold quality
colon	UBERON:0001155	68.44	gold quality
tibial artery	UBERON:0007610	68.18	gold quality
heart left ventricle	UBERON:0002084	68.13	gold quality
ascending aorta	UBERON:0001496	67.81	gold quality
Ammon’s horn	UBERON:0001954	67.34	gold quality
body of pancreas	UBERON:0001150	66.92	gold quality
lower esophagus muscularis layer	UBERON:0035833	66.53	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	66.38	gold quality
left adrenal gland cortex	UBERON:0035825	65.81	gold quality
left ovary	UBERON:0002119	65.60	gold quality
multicellular organism	UBERON:0000468	65.55	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.22

Regulation

Is transcription factor: no

Cross-species orthologs

2 orthologs

Organism	Symbol	Gene ID
danio_rerio	SCARNA14	ENSDARG00000105169
mus_musculus	Gm24289	ENSMUSG00000088254

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.