SCARNA16

Summary

SCARNA16 (small Cajal body-specific RNA 16, HGNC:32573) is a small Cajal body RNA gene on chromosome 17q25.2.

Predicted to be involved in RNA processing. Predicted to be located in nucleolus.

Source: NCBI Gene 677781 — RefSeq curated summary.

At a glance

• Gene type: non-coding (scaRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:32573
Approved symbol	SCARNA16
Name	small Cajal body-specific RNA 16
Location	17q25.2
Locus type	RNA, small nucleolar
Status	Approved
Aliases	ACA47
Ensembl gene	ENSG00000275143
Ensembl biotype	scaRNA
Entrez	677781
RNAcentral	URS000015F227 — ncRNA, 187 nt, 2 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 scaRNA

ENST00000515981

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000515981 — 1 exons

Exon	Start	End
ENSE00002088258	77089307	77089493

Expression profiles

Bgee: expression breadth ubiquitous, 110 present calls, max score 99.20.

Top tissues by expression

110 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
adrenal tissue	UBERON:0018303	99.20	gold quality
sural nerve	UBERON:0015488	99.04	gold quality
colonic epithelium	UBERON:0000397	91.92	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	88.06	gold quality
corpus callosum	UBERON:0002336	84.51	gold quality
ganglionic eminence	UBERON:0004023	83.97	gold quality
hindlimb stylopod muscle	UBERON:0004252	83.72	gold quality
tonsil	UBERON:0002372	82.29	gold quality
bone marrow cell	CL:0002092	82.25	gold quality
bone marrow	UBERON:0002371	77.58	gold quality
kidney	UBERON:0002113	77.51	gold quality
liver	UBERON:0002107	76.57	gold quality
granulocyte	CL:0000094	75.06	gold quality
blood	UBERON:0000178	74.09	gold quality
lung	UBERON:0002048	73.08	gold quality
monocyte	CL:0000576	72.34	gold quality
adult mammalian kidney	UBERON:0000082	72.16	gold quality
leukocyte	CL:0000738	71.60	gold quality
muscle tissue	UBERON:0002385	71.42	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	71.13	gold quality
prefrontal cortex	UBERON:0000451	70.14	gold quality
stomach	UBERON:0000945	69.50	gold quality
adrenal gland	UBERON:0002369	68.13	gold quality
descending thoracic aorta	UBERON:0002345	67.74	gold quality
islet of Langerhans	UBERON:0000006	65.95	gold quality
calcaneal tendon	UBERON:0003701	65.91	gold quality
skeletal muscle tissue	UBERON:0001134	65.40	gold quality
heart	UBERON:0000948	64.94	gold quality
lymph node	UBERON:0000029	64.51	gold quality
pancreas	UBERON:0001264	64.49	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.00

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.