SCARNA17

Summary

SCARNA17 (small Cajal body-specific RNA 17, HGNC:32574) is a small Cajal body RNA gene on chromosome 18q21.1.

Predicted to be involved in RNA processing. Predicted to be located in Cajal body and nucleolus.

Source: NCBI Gene 677769 — RefSeq curated summary.

At a glance

• Gene type: non-coding (scaRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:32574
Approved symbol	SCARNA17
Name	small Cajal body-specific RNA 17
Location	18q21.1
Locus type	RNA, small nucleolar
Status	Approved
Aliases	mgU12-22/U4-8, U91
Ensembl gene	ENSG00000251992
Ensembl biotype	scaRNA
OMIM	615645
Entrez	677769
RNAcentral	URS00004D18E1 — lncRNA, 421 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 scaRNA

ENST00000516183

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000516183 — 1 exons

Exon	Start	End
ENSE00002088460	49814133	49814276

Expression profiles

Bgee: expression breadth broad, 85 present calls, max score 84.00.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 3.2476 / max 59.5546, expressed in 1241 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
170242	397.0163	1823
170243	2.4898	1048
170244	0.7579	413

Top tissues by expression

85 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
blood	UBERON:0000178	84.00	gold quality
skeletal muscle tissue	UBERON:0001134	78.87	gold quality
monocyte	CL:0000576	78.41	gold quality
hypothalamus	UBERON:0001898	74.93	gold quality
adult mammalian kidney	UBERON:0000082	71.84	gold quality
body of uterus	UBERON:0009853	70.86	gold quality
islet of Langerhans	UBERON:0000006	70.73	gold quality
ectocervix	UBERON:0012249	70.29	gold quality
anterior cingulate cortex	UBERON:0009835	70.12	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	69.81	gold quality
myometrium	UBERON:0001296	66.92	gold quality
vermiform appendix	UBERON:0001154	66.48	gold quality
muscle of leg	UBERON:0001383	65.65	gold quality
stomach	UBERON:0000945	65.41	gold quality
right ovary	UBERON:0002118	65.13	gold quality
kidney	UBERON:0002113	64.94	gold quality
lung	UBERON:0002048	64.15	gold quality
gastrocnemius	UBERON:0001388	63.99	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	63.42	gold quality
Ammon’s horn	UBERON:0001954	63.24	gold quality
tibial artery	UBERON:0007610	63.22	gold quality
popliteal artery	UBERON:0002250	62.93	gold quality
heart left ventricle	UBERON:0002084	62.52	gold quality
vagina	UBERON:0000996	62.11	gold quality
skin of abdomen	UBERON:0001416	62.00	gold quality
tibial nerve	UBERON:0001323	61.65	gold quality
body of pancreas	UBERON:0001150	61.54	gold quality
transverse colon	UBERON:0001157	61.43	gold quality
Brodmann (1909) area 9	UBERON:0013540	61.33	gold quality
placenta	UBERON:0001987	61.30	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.00

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.