SCARNA5

Summary

SCARNA5 (small Cajal body-specific RNA 5, HGNC:32561) is a small Cajal body RNA gene on chromosome 2q37.1.

Predicted to be involved in RNA processing. Located in Cajal body.

Source: NCBI Gene 677775 — RefSeq curated summary.

At a glance

• Gene type: non-coding (scaRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:32561
Approved symbol	SCARNA5
Name	small Cajal body-specific RNA 5
Location	2q37.1
Locus type	RNA, small nucleolar
Status	Approved
Aliases	U87
Ensembl gene	ENSG00000252010
Ensembl biotype	scaRNA
OMIM	615640
Entrez	677775
RNAcentral	URS000075D68F — lncRNA, 278 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 scaRNA

ENST00000516201

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000516201 — 1 exons

Exon	Start	End
ENSE00002088478	233275727	233276002

Expression profiles

Bgee: expression breadth ubiquitous, 126 present calls, max score 99.90.

FANTOM5 (CAGE): breadth broad, TPM avg 1.5983 / max 279.2376, expressed in 531 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
26039	1.5983	531

Top tissues by expression

126 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
colonic epithelium	UBERON:0000397	99.90	gold quality
corpus callosum	UBERON:0002336	99.86	gold quality
bone marrow cell	CL:0002092	99.76	gold quality
tonsil	UBERON:0002372	99.74	gold quality
skeletal muscle tissue	UBERON:0001134	99.53	gold quality
sural nerve	UBERON:0015488	99.39	gold quality
adrenal tissue	UBERON:0018303	99.37	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	89.93	gold quality
bone marrow	UBERON:0002371	89.31	gold quality
hindlimb stylopod muscle	UBERON:0004252	86.99	gold quality
calcaneal tendon	UBERON:0003701	86.89	gold quality
primary visual cortex	UBERON:0002436	78.90	gold quality
liver	UBERON:0002107	78.39	gold quality
kidney	UBERON:0002113	77.58	gold quality
urinary bladder	UBERON:0001255	76.62	gold quality
ganglionic eminence	UBERON:0004023	76.32	gold quality
superior frontal gyrus	UBERON:0002661	72.94	gold quality
blood	UBERON:0000178	72.46	gold quality
cortex of kidney	UBERON:0001225	71.95	gold quality
lymph node	UBERON:0000029	71.09	gold quality
prefrontal cortex	UBERON:0000451	70.44	gold quality
monocyte	CL:0000576	68.76	gold quality
leukocyte	CL:0000738	68.66	gold quality
adult mammalian kidney	UBERON:0000082	67.10	gold quality
lung	UBERON:0002048	67.02	gold quality
stomach	UBERON:0000945	65.95	gold quality
uterine cervix	UBERON:0000002	65.31	gold quality
gall bladder	UBERON:0002110	65.09	gold quality
islet of Langerhans	UBERON:0000006	64.84	gold quality
stromal cell of endometrium	CL:0002255	64.60	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.22

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): TP53

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.