SCARNA6

Summary

SCARNA6 (small Cajal body-specific RNA 6, HGNC:32562) is a small Cajal body RNA gene on chromosome 2q37.1.

Predicted to be involved in RNA processing. Predicted to be located in nucleolus.

Source: NCBI Gene 677772 — RefSeq curated summary.

At a glance

• Gene type: non-coding (scaRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:32562
Approved symbol	SCARNA6
Name	small Cajal body-specific RNA 6
Location	2q37.1
Locus type	RNA, small nucleolar
Status	Approved
Aliases	U88
Ensembl gene	ENSG00000251791
Ensembl biotype	scaRNA
OMIM	615641
Entrez	677772
RNAcentral	URS00005F3006 — lncRNA, 266 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 scaRNA

ENST00000515982

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000515982 — 1 exons

Exon	Start	End
ENSE00002088259	233288676	233288940

Expression profiles

Bgee: expression breadth ubiquitous, 127 present calls, max score 99.91.

Top tissues by expression

127 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
corpus callosum	UBERON:0002336	99.91	gold quality
colonic epithelium	UBERON:0000397	99.69	gold quality
bone marrow cell	CL:0002092	99.38	gold quality
sural nerve	UBERON:0015488	98.58	gold quality
adrenal tissue	UBERON:0018303	97.35	gold quality
tonsil	UBERON:0002372	91.82	gold quality
bone marrow	UBERON:0002371	89.70	gold quality
calcaneal tendon	UBERON:0003701	88.13	gold quality
skeletal muscle tissue	UBERON:0001134	87.68	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.17	gold quality
hindlimb stylopod muscle	UBERON:0004252	80.29	gold quality
urinary bladder	UBERON:0001255	80.05	gold quality
liver	UBERON:0002107	78.21	gold quality
uterine cervix	UBERON:0000002	77.14	gold quality
blood	UBERON:0000178	74.44	gold quality
lung	UBERON:0002048	74.06	gold quality
kidney	UBERON:0002113	73.98	gold quality
ganglionic eminence	UBERON:0004023	73.94	gold quality
stromal cell of endometrium	CL:0002255	72.87	gold quality
endocervix	UBERON:0000458	72.84	gold quality
stomach	UBERON:0000945	72.82	gold quality
granulocyte	CL:0000094	72.15	gold quality
skin of abdomen	UBERON:0001416	72.14	gold quality
zone of skin	UBERON:0000014	71.95	gold quality
right ovary	UBERON:0002118	71.93	gold quality
thyroid gland	UBERON:0002046	71.90	gold quality
right lobe of thyroid gland	UBERON:0001119	71.63	gold quality
skin of leg	UBERON:0001511	71.29	gold quality
left lobe of thyroid gland	UBERON:0001120	71.25	gold quality
minor salivary gland	UBERON:0001830	71.24	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.00

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.