SCARNA7

Summary

SCARNA7 (small Cajal body-specific RNA 7, HGNC:32563) is a small Cajal body RNA gene on chromosome 3q25.33.

Predicted to be involved in RNA processing. Predicted to be located in nucleolus.

Source: NCBI Gene 677767 — RefSeq curated summary.

At a glance

• Gene type: non-coding (scaRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:32563
Approved symbol	SCARNA7
Name	small Cajal body-specific RNA 7
Location	3q25.33
Locus type	RNA, small nucleolar
Status	Approved
Aliases	U90
Ensembl gene	ENSG00000238741
Ensembl biotype	scaRNA
OMIM	615644
Entrez	677767
RNAcentral	URS00002B3204 — ncRNA, 330 nt, 2 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 scaRNA

ENST00000458797

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000458797 — 1 exons

Exon	Start	End
ENSE00001807171	160514907	160515236

Expression profiles

Bgee: expression breadth ubiquitous, 131 present calls, max score 99.87.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 37.2056 / max 8032.5747, expressed in 1764 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter ID	TPM avg	Samples expressed
45368	33.7452	1748
45367	2.6151	1023
45366	0.6007	218
45365	0.2446	105

Top tissues by expression

131 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
colonic epithelium	UBERON:0000397	99.87	gold quality
bone marrow cell	CL:0002092	99.74	gold quality
calcaneal tendon	UBERON:0003701	99.71	gold quality
adrenal tissue	UBERON:0018303	99.65	gold quality
sural nerve	UBERON:0015488	99.27	gold quality
corpus callosum	UBERON:0002336	97.92	gold quality
hindlimb stylopod muscle	UBERON:0004252	92.92	gold quality
bone marrow	UBERON:0002371	91.43	gold quality
skeletal muscle tissue	UBERON:0001134	90.11	gold quality
tonsil	UBERON:0002372	88.11	gold quality
muscle tissue	UBERON:0002385	85.13	gold quality
kidney	UBERON:0002113	82.26	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.94	silver quality
primary visual cortex	UBERON:0002436	81.66	gold quality
superior frontal gyrus	UBERON:0002661	80.64	gold quality
liver	UBERON:0002107	79.09	gold quality
monocyte	CL:0000576	78.13	gold quality
cortex of kidney	UBERON:0001225	77.83	gold quality
adult mammalian kidney	UBERON:0000082	77.77	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	72.88	gold quality
placenta	UBERON:0001987	72.41	gold quality
urinary bladder	UBERON:0001255	71.68	gold quality
blood	UBERON:0000178	71.31	gold quality
endometrium	UBERON:0001295	71.24	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	70.99	gold quality
ganglionic eminence	UBERON:0004023	70.50	gold quality
prefrontal cortex	UBERON:0000451	68.37	gold quality
islet of Langerhans	UBERON:0000006	68.19	gold quality
muscle of leg	UBERON:0001383	67.74	gold quality
stromal cell of endometrium	CL:0002255	67.33	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.06

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.