SCART1
gene geneOn this page
Also known as CD163c-alpha
Summary
SCART1 (scavenger receptor family member expressed on T cells 1, HGNC:32411) is a protein-coding gene on chromosome 10q26.3, encoding Scavenger receptor cysteine-rich domain-containing protein SCART1 (Q4G0T1). May play a role in the immune system, perhaps as a co-receptor on alphabeta and gammadelta T-cells.
Predicted to enable scavenger receptor activity. Predicted to be involved in gamma-delta T cell lineage commitment. Located in brush border and cytoplasm.
Source: NCBI Gene 619207 — automated summary from GO annotations (Alliance of Genome Resources).
At a glance
- GTEx eGene: eQTL in 46 tissues, sQTL in 16 (q < 0.05)
- MANE Select transcript:
NM_001396050
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:32411 |
| Approved symbol | SCART1 |
| Name | scavenger receptor family member expressed on T cells 1 |
| Location | 10q26.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CD163c-alpha |
| Ensembl gene | ENSG00000214279 |
| Ensembl biotype | protein_coding |
| Entrez | 619207 |
Gene structure
Transcript identifiers
Ensembl transcripts: 7 — 5 retained_intron, 2 protein_coding
MANE Select: ENST00000640237
Transcript support level (Ensembl TSL; 1 = fully mRNA-supported): TSL 2: 5, TSL 5: 1
ENST00000640237, ENST00000462252, ENST00000463137, ENST00000475114, ENST00000482993, ENST00000488261, ENST00001136530
RefSeq mRNA: 1 — MANE Select: NM_001396050
NM_001396050
CCDS: CCDS91391
Canonical transcript exons
ENST00000640237 — 12 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001628808 | 133457279 | 133457575 |
| ENSE00003802017 | 133459021 | 133459326 |
| ENSE00003803573 | 133456237 | 133456554 |
| ENSE00003805075 | 133458360 | 133458656 |
| ENSE00003805472 | 133466235 | 133466381 |
| ENSE00003805698 | 133459487 | 133460170 |
| ENSE00003806019 | 133465106 | 133465174 |
| ENSE00003807120 | 133465251 | 133465565 |
| ENSE00003807709 | 133464606 | 133464911 |
| ENSE00003809737 | 133467198 | 133467353 |
| ENSE00003978156 | 133467847 | 133469760 |
| ENSE00003978157 | 133453945 | 133454064 |
Expression profiles
Bgee: expression breadth ubiquitous, 158 present calls, max score 81.95.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.3231 / max 66.2479, expressed in 89 samples.
Highest expression (Bgee): uterine tube, lower esophagus mucosa, male germ line stem cell (sensu Vertebrata) in testis, stromal cell of endometrium, esophagus mucosa.
Genetic regulation across tissues (GTEx eQTL / sQTL)
SCART1 is an eGene in GTEx v10 — its expression is genetically regulated (eQTL) in 46 tissues and its splicing (sQTL) in 16 (q < 0.05). Strongest associations first; slope = normalized effect of the lead variant’s alternative allele.
showing 20 of 62 significant tissue × QTL associations:
| Tissue | QTL | q-value | Slope | Lead variant |
|---|---|---|---|---|
| Nerve Tibial | eqtl | 1.8e-22 | -0.44 | 10:133419150:C:T |
| Testis | eqtl | 4.1e-20 | -0.57 | 10:133419150:C:T |
| Pituitary | eqtl | 2.0e-19 | -0.70 | 10:133419150:C:T |
| Brain Frontal Cortex BA9 | eqtl | 5.0e-17 | -0.62 | 10:133429144:C:CAG |
| Thyroid | eqtl | 7.5e-17 | -0.37 | 10:133411456:A:G |
| Brain Cortex | eqtl | 4.4e-16 | +0.67 | 10:133449883:A:G |
| Brain Nucleus accumbens basal ganglia | eqtl | 2.8e-15 | +0.56 | 10:133429369:G:A |
| Brain Caudate basal ganglia | eqtl | 2.4e-14 | -0.49 | 10:133419150:C:T |
| Lung | eqtl | 1.5e-13 | -0.33 | 10:133411456:A:G |
| Brain Hypothalamus | eqtl | 4.3e-12 | -0.45 | 10:133421866:C:A |
| Adrenal Gland | eqtl | 6.2e-12 | -0.57 | 10:133403471:G:A |
| Adipose Subcutaneous | eqtl | 8.7e-12 | -0.65 | 10:133463654:G:A |
| Cells Cultured fibroblasts | eqtl | 8.9e-12 | -0.31 | 10:133419150:C:T |
| Brain Cerebellum | eqtl | 3.6e-11 | -0.61 | 10:133419150:C:T |
| Testis | sqtl | 7.0e-11 | +0.78 | 10:133469269:T:G |
| Artery Tibial | sqtl | 9.1e-11 | +0.45 | 10:133419150:C:T |
| Brain Anterior cingulate cortex BA24 | eqtl | 9.8e-11 | +0.49 | 10:133419430:C:T |
| Artery Tibial | eqtl | 3.1e-10 | -0.50 | 10:133458260:G:A |
| Muscle Skeletal | eqtl | 5.6e-10 | -0.55 | 10:133397517:C:T |
| Adipose Visceral Omentum | eqtl | 1.1e-09 | -0.34 | 10:133411456:A:G |
FANTOM5 promoters
2 alternative TSS:
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 107803 | 0.3060 | 88 |
| 107802 | 0.0171 | 5 |
Top tissues by expression
showing 100 of 246 tissues by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right uterine tube | UBERON:0001302 | 81.95 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 79.98 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 74.04 | gold quality |
| stromal cell of endometrium | CL:0002255 | 73.53 | gold quality |
| esophagus mucosa | UBERON:0002469 | 72.14 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 71.76 | gold quality |
| body of pancreas | UBERON:0001150 | 71.39 | gold quality |
| body of uterus | UBERON:0009853 | 70.99 | gold quality |
| body of stomach | UBERON:0001161 | 70.95 | gold quality |
| granulocyte | CL:0000094 | 70.85 | gold quality |
| right adrenal gland | UBERON:0001233 | 70.38 | gold quality |
| popliteal artery | UBERON:0002250 | 70.21 | gold quality |
| tibial artery | UBERON:0007610 | 70.21 | gold quality |
| esophagus | UBERON:0001043 | 70.15 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 70.09 | gold quality |
| right lobe of liver | UBERON:0001114 | 70.04 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 69.37 | gold quality |
| metanephros cortex | UBERON:0010533 | 69.28 | gold quality |
| spleen | UBERON:0002106 | 69.24 | gold quality |
| aorta | UBERON:0000947 | 69.20 | gold quality |
| sural nerve | UBERON:0015488 | 69.14 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 69.03 | gold quality |
| skin of abdomen | UBERON:0001416 | 68.86 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 68.83 | gold quality |
| left adrenal gland | UBERON:0001234 | 68.61 | gold quality |
| bone marrow cell | CL:0002092 | 68.55 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 68.46 | gold quality |
| left coronary artery | UBERON:0001626 | 68.45 | gold quality |
| right frontal lobe | UBERON:0002810 | 68.45 | gold quality |
| lower esophagus | UBERON:0013473 | 68.40 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 68.37 | gold quality |
| thoracic aorta | UBERON:0001515 | 68.24 | gold quality |
| ascending aorta | UBERON:0001496 | 68.20 | gold quality |
| right coronary artery | UBERON:0001625 | 68.08 | gold quality |
| left uterine tube | UBERON:0001303 | 68.05 | gold quality |
| minor salivary gland | UBERON:0001830 | 68.03 | gold quality |
| right ovary | UBERON:0002118 | 67.82 | gold quality |
| adrenal cortex | UBERON:0001235 | 67.80 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 67.71 | gold quality |
| skin of leg | UBERON:0001511 | 67.70 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 67.56 | gold quality |
| ectocervix | UBERON:0012249 | 67.54 | gold quality |
| transverse colon | UBERON:0001157 | 67.46 | gold quality |
| stomach | UBERON:0000945 | 67.30 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 67.19 | gold quality |
| thyroid gland | UBERON:0002046 | 67.17 | gold quality |
| endocervix | UBERON:0000458 | 67.10 | gold quality |
| coronary artery | UBERON:0001621 | 66.89 | gold quality |
| tibial nerve | UBERON:0001323 | 66.83 | gold quality |
| gall bladder | UBERON:0002110 | 66.67 | gold quality |
| left ovary | UBERON:0002119 | 66.60 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 66.50 | gold quality |
| colonic epithelium | UBERON:0000397 | 66.45 | silver quality |
| mucosa of stomach | UBERON:0001199 | 66.20 | gold quality |
| spinal cord | UBERON:0002240 | 65.90 | gold quality |
| omental fat pad | UBERON:0010414 | 65.73 | gold quality |
| peritoneum | UBERON:0002358 | 65.66 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 65.65 | gold quality |
| adrenal gland | UBERON:0002369 | 65.35 | gold quality |
| small intestine | UBERON:0002108 | 65.33 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 65.15 | gold quality |
| right lung | UBERON:0002167 | 65.04 | gold quality |
| zone of skin | UBERON:0000014 | 65.03 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 65.03 | gold quality |
| cortex of kidney | UBERON:0001225 | 64.77 | gold quality |
| uterine cervix | UBERON:0000002 | 64.72 | gold quality |
| mouth mucosa | UBERON:0003729 | 64.45 | gold quality |
| adenohypophysis | UBERON:0002196 | 64.43 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 64.38 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 64.21 | gold quality |
| gastrocnemius | UBERON:0001388 | 64.13 | gold quality |
| pituitary gland | UBERON:0000007 | 64.07 | gold quality |
| muscle of leg | UBERON:0001383 | 64.00 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 63.99 | gold quality |
| colon | UBERON:0001155 | 63.80 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 63.77 | gold quality |
| vagina | UBERON:0000996 | 63.67 | gold quality |
| apex of heart | UBERON:0002098 | 63.66 | gold quality |
| cerebellar cortex | UBERON:0002129 | 63.66 | gold quality |
| fundus of stomach | UBERON:0001160 | 63.52 | gold quality |
| upper lobe of lung | UBERON:0008948 | 63.46 | gold quality |
| intestine | UBERON:0000160 | 63.28 | gold quality |
| vermiform appendix | UBERON:0001154 | 63.22 | gold quality |
| large intestine | UBERON:0000059 | 62.99 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 62.54 | gold quality |
| prostate gland | UBERON:0002367 | 62.29 | gold quality |
| ovary | UBERON:0000992 | 62.22 | gold quality |
| cerebellum | UBERON:0002037 | 62.07 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 62.00 | gold quality |
| lymph node | UBERON:0000029 | 61.85 | gold quality |
| rectum | UBERON:0001052 | 61.84 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 61.70 | gold quality |
| right atrium auricular region | UBERON:0006631 | 61.64 | gold quality |
| endothelial cell | CL:0000115 | 61.53 | gold quality |
| pancreas | UBERON:0001264 | 61.53 | gold quality |
| heart left ventricle | UBERON:0002084 | 61.24 | gold quality |
| Ammon’s horn | UBERON:0001954 | 61.23 | gold quality |
| anatomical system | UBERON:0000467 | 61.16 | gold quality |
| cardiac atrium | UBERON:0002081 | 61.10 | gold quality |
| liver | UBERON:0002107 | 60.90 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 4.29 |
HPA expression
RNA tissue specificity: Low tissue specificity
43 HPA tissues / cells by nTPM:
| Tissue / cell | Axis | nTPM | Protein (IHC) |
|---|---|---|---|
| Hippocampus | tissue | 13.4 | not detected |
| Postcentral gyrus | tissue | 9.6 | |
| Choroid plexus | tissue | 7.6 | |
| Nucleus accumbens | tissue | 7.5 | |
| Locus coeruleus | tissue | 6.3 | |
| Skin 1 | tissue | 0.8 | not detected |
| Bone marrow | tissue | 0.8 | not detected |
| Epididymis | tissue | 0.7 | not detected |
| Spleen | tissue | 0.7 | medium |
| Retina | tissue | 0.6 | |
| Breast | tissue | 0.5 | not detected |
| Skeletal muscle | tissue | 0.5 | not detected |
| Liver | tissue | 0.5 | not detected |
| Small intestine | tissue | 0.5 | not detected |
| Duodenum | tissue | 0.5 | not detected |
| Lymph node | tissue | 0.4 | medium |
| Testis | tissue | 0.3 | not detected |
| Stomach 1 | tissue | 0.3 | not detected |
| Adipose tissue | tissue | 0.3 | not detected |
| Lung | tissue | 0.3 | low |
| Appendix | tissue | 0.3 | not detected |
| Salivary gland | tissue | 0.2 | not detected |
| Rectum | tissue | 0.2 | not detected |
| Colon | tissue | 0.2 | not detected |
| Pancreas | tissue | 0.2 | not detected |
| Endometrium 1 | tissue | 0.2 | not detected |
| Placenta | tissue | 0.2 | not detected |
| Gallbladder | tissue | 0.2 | not detected |
| Kidney | tissue | 0.2 | not detected |
| Prostate | tissue | 0.2 | not detected |
| Adrenal gland | tissue | 0.2 | not detected |
| Tonsil | tissue | 0.2 | medium |
| Cervix | tissue | 0.1 | not detected |
| Pituitary gland | tissue | 0.1 | |
| Heart muscle | tissue | 0.1 | not detected |
| Ovary | tissue | 0.1 | not detected |
| Seminal vesicle | tissue | 0.1 | not detected |
| Esophagus | tissue | 0.1 | not detected |
| Parathyroid gland | tissue | 0.1 | not detected |
| Smooth muscle | tissue | 0.1 | not detected |
| Thyroid gland | tissue | 0.1 | not detected |
| Thymus | tissue | 0.1 | |
| Fallopian tube | tissue | 0.1 | not detected |
Brain sub-regions (HPA Brain Atlas): detected in 183; highest nTPM — Posterior cingulate cortex (17.7), Hippocampus, CA3 (17.6), Dentate gyrus (13.6), Hippocampus, CA1 (13.1), Flocculonodular lobe (11.8).
Regulation
Is transcription factor: no
Functional genomics
Regional missense constraint (gnomAD RMC): no regional variation along ENST00000640237 — one region, missense o/e 1.93.
Literature-anchored findings (GeneRIF, showing 1)
- the characterization of hSCART1 at the mRNA and protein level suggests that the protein plays a role in the immune system, perhaps as a co-receptor on alphabeta and gammadelta T cells. (PMID:22795646)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Scart1 | ENSMUSG00000025461 |
| rattus_norvegicus | Scart1 | ENSRNOG00000018978 |
Paralogs (15): CD6 (ENSG00000013725), CD5L (ENSG00000073754), LGALS3BP (ENSG00000108679), CD5 (ENSG00000110448), LOX (ENSG00000113083), LOXL3 (ENSG00000115318), LOXL1 (ENSG00000129038), LOXL2 (ENSG00000134013), LOXL4 (ENSG00000138131), SSC4D (ENSG00000146700), PRSS12 (ENSG00000164099), CD163 (ENSG00000177575), CD163L1 (ENSG00000177675), SSC5D (ENSG00000179954), DMBT1 (ENSG00000187908)
Additional cross-species homologs
Sequence homologs in species beyond Ensembl Compara’s model organisms, by Diamond local protein alignment (% sequence identity; best hit per species). Lower-identity rows are more distant homologs. The matched accessions’ gene symbols aren’t in biobtree yet, so each row shows the UniProt accession.
| Organism | UniProt | Identity | Method |
|---|---|---|---|
| Pongo abelii | Q5RDA4 | 99.5% | Diamond |
| Pan troglodytes | Q5G271 | 99.2% | Diamond |
| Nomascus leucogenys | Q5G268 | 98.5% | Diamond |
| Gorilla gorilla gorilla | Q5G270 | 98.5% | Diamond |
| Trachypithecus phayrei | Q5G266 | 98.3% | Diamond |
| Macaca mulatta | Q5G267 | 98.3% | Diamond |
| Pongo pygmaeus | Q5G269 | 96.7% | Diamond |
| Chlorocebus aethiops | Q2VLG4 | 95.8% | Diamond |
| Saguinus labiatus | Q5G265 | 95.5% | Diamond |
| Bos taurus | A6H737 | 92.9% | Diamond |
| Xenopus tropicalis | B4F6N6 | 91.4% | Diamond |
| Xenopus laevis | Q08B63 | 91.4% | Diamond |
| Sus scrofa | Q2VL90 | 84.0% | Diamond |
| Canis lupus familiaris | Q2VLG6 | 84.0% | Diamond |
| Mesocricetus auratus | P70117 | 82.3% | Diamond |
| Gallus gallus | E1C3U7 | 79.4% | Diamond |
| Danio rerio | Q24JV9 | 78.8% | Diamond |
| Oryctolagus cuniculus | Q05585 | 78.4% | Diamond |
| Patiria pectinifera | F7J220 | 54.5% | Diamond |
| Drosophila melanogaster | M9NDE3 | 41.9% | Diamond |
Genomic neighbors (locus context)
Genes flanking this one on the chromosome (NCBI/Entrez gene neighborhood). Positional context only — some neighbors share regulatory elements (bidirectional promoters, antisense/overlapping transcripts), but chromosomal adjacency is not itself a functional relationship (see Interactions for that).
| Symbol | Type | Entrez |
|---|---|---|
| CYP2E1 | protein-coding | 1571 |
| SYCE1 | protein-coding | 93426 |
| PAOX | protein-coding | 196743 |
| SPRN | protein-coding | 503542 |
| MTG1 | protein-coding | 92170 |
Protein
Protein identifiers
Scavenger receptor cysteine-rich domain-containing protein SCART1 — Q4G0T1 (reviewed: Q4G0T1)
Alternative names: Scavenger receptor family member expressed on T cells 1
All UniProt accessions (1): Q4G0T1
UniProt curated annotations — full annotation on UniProt →
Function. May play a role in the immune system, perhaps as a co-receptor on alphabeta and gammadelta T-cells.
Subcellular location. Membrane.
Tissue specificity. Mainly expressed by CD4(+) and CD8(+) T lymphocytes. Also highly expressed in small intestine and colon. Expressed (at protein level) in small intestine, stomach, gall bladder, and placental villi.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q4G0T1-1 | 1 | yes |
| Q4G0T1-2 | Gamma | |
| Q4G0T1-3 | Alpha |
RefSeq proteins (1): NP_001382979* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001190 | SRCR | Domain |
| IPR036772 | SRCR-like_dom_sf | Homologous_superfamily |
Pfam: PF00530
UniProt features (40 total): disulfide bond 18, domain 8, splice variant 4, glycosylation site 3, topological domain 2, sequence conflict 2, signal peptide 1, chain 1, transmembrane region 1
Structure
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q4G0T1-F1 | 70.15 | 0.17 |
Human Protein Atlas
Protein class: Predicted membrane proteins
Protein evidence: Evidence at protein level
Antibody reliability (HPA): IH supported
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (18)
| Type | Positions |
|---|---|
| Disulfide bond | 53–117, 66–127, 97–107, 160–216, 171–226, 196–206, 253–315, 266–325, 297–307, 353–417, 366–427, 397–407, 472–533, 503–513, 594–655, 625–635, 824–885, 855–865 |
Glycosylation sites (3)
| Type | Positions |
|---|---|
| N-linked (glcnac…) asparagine | 94, 129, 332 |
Function
Pathways and Gene Ontology
Reactome pathways
0 curated (TAS) of 0; 0 disease pathways. Curated-first; evidence = TAS (manually curated) vs IEA (electronic inference).
MSigDB gene sets: 51 (showing top):
GOBP_VESICLE_MEDIATED_TRANSPORT, GOBP_LEUKOCYTE_MEDIATED_IMMUNITY, CADWELL_ATG16L1_TARGETS_DN, GOBP_LYMPHOCYTE_MEDIATED_IMMUNITY, GOBP_ADAPTIVE_IMMUNE_RESPONSE, GOBP_IMMUNE_EFFECTOR_PROCESS, GOBP_T_CELL_LINEAGE_COMMITMENT, GOBP_T_CELL_MEDIATED_IMMUNITY, GOBP_CELL_FATE_COMMITMENT, ACEVEDO_METHYLATED_IN_LIVER_CANCER_DN, GOBP_ADAPTIVE_IMMUNE_RESPONSE_BASED_ON_SOMATIC_RECOMBINATION_OF_IMMUNE_RECEPTORS_BUILT_FROM_IMMUNOGLOBULIN_SUPERFAMILY_DOMAINS, GOCC_APICAL_PART_OF_CELL, GAVIN_FOXP3_TARGETS_CLUSTER_T7, GAVIN_FOXP3_TARGETS_CLUSTER_P3, GOCC_CLUSTER_OF_ACTIN_BASED_CELL_PROJECTIONS
GO Biological Process (4): gamma-delta T cell lineage commitment (GO:0002365), T cell mediated immunity (GO:0002456), immune system process (GO:0002376), vesicle-mediated transport (GO:0016192)
GO Molecular Function (1): scavenger receptor activity (GO:0005044)
GO Cellular Component (4): cytoplasm (GO:0005737), plasma membrane (GO:0005886), brush border (GO:0005903), membrane (GO:0016020)
GO top-level categories
15 GO namespaces:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| T cell lineage commitment | 1 |
| gamma-delta T cell differentiation | 1 |
| lymphocyte mediated immunity | 1 |
| adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains | 1 |
| biological_process | 1 |
| transport | 1 |
| cellular process | 1 |
| cargo receptor activity | 1 |
| intracellular anatomical structure | 1 |
| membrane | 1 |
| cell periphery | 1 |
| microvillus | 1 |
| apical part of cell | 1 |
| cluster of actin-based cell projections | 1 |
Experimentally-supported GO annotations
GO terms backed by direct experimental evidence (ECO experimental codes) — 2 of 9 annotations. The rest are phylogenetic / computational / electronic (IEA).
2 experimentally-supported GO terms:
| GO term | NS | Evidence |
|---|---|---|
| brush border | CC | direct assay |
| cytoplasm | CC | direct assay |
Protein interactions and networks
STRING
showing 15 of 262 interactions by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SCART1 | SYCE1 | Q8N0S2 | 389 |
| SCART1 | OR7A17 | O14581 | 384 |
| SCART1 | FHOD1 | Q9Y613 | 356 |
| SCART1 | EFCAB14 | O75071 | 340 |
| SCART1 | SOX13 | Q9UN79 | 338 |
| SCART1 | BMP1 | P13497 | 321 |
| SCART1 | GP2 | P55259 | 301 |
| SCART1 | CD151 | P48509 | 297 |
| SCART1 | FUOM | A2VDF0 | 295 |
| SCART1 | LDLRAD2 | Q5SZI1 | 285 |
| SCART1 | CD5 | P06127 | 277 |
| SCART1 | TEX101 | Q9BY14 | 271 |
| SCART1 | GK3 | Q14409 | 260 |
| SCART1 | SCARF2 | Q96GP6 | 241 |
| SCART1 | CASKIN2 | Q8WXE0 | 240 |
Disease & clinical
Genetic variants
ClinVar
No ClinVar records for this gene.
SpliceAI
Top 10 splice-impact sites by Δscore (adjacent positions with the same effect merged into one range; 34 predictions of 1,016):
| Position(s) | Effect | Δscore | Sites |
|---|---|---|---|
| 10:133467196–133467197 | acceptor_loss | 1.0000 | 2 |
| 10:133467354–133467355 | donor_loss | 1.0000 | 5 |
| 10:133454065–133454066 | donor_loss | 0.9900 | 5 |
| 10:133457576–133457577 | donor_loss | 0.9900 | 5 |
| 10:133459485–133459486 | acceptor_loss | 0.9900 | 6 |
| 10:133460171–133460172 | donor_loss | 0.9900 | 5 |
| 10:133467196–133467197 | acceptor_loss | 0.9900 | 3 |
| 10:133467355 | donor_loss | 0.9800 | |
| 10:133467774 | acceptor_gain | 0.9800 | |
| 10:133467358 | donor_gain | 0.9600 |
AlphaMissense
1,378 missense substitutions predicted likely pathogenic (of 6,543 scored), across 388 residues. Top 20 hotspot residues, ranked by the number of likely-pathogenic substitutions (of those reachable by a single-nucleotide change), then by mean score:
| Residue | Likely-pathogenic substitutions | Mean am_pathogenicity | Max am_pathogenicity |
|---|---|---|---|
| F170 | 8 | 0.812 | 0.970 |
| D38 | 8 | 0.806 | 0.915 |
| D528 | 8 | 0.754 | 0.856 |
| C66 | 7 | 0.963 | 0.984 |
| C366 | 7 | 0.960 | 0.983 |
| C171 | 7 | 0.959 | 0.984 |
| W57 | 7 | 0.955 | 0.998 |
| C97 | 7 | 0.955 | 0.981 |
| C53 | 7 | 0.953 | 0.977 |
| C206 | 7 | 0.949 | 0.973 |
| C226 | 7 | 0.947 | 0.976 |
| C71 | 7 | 0.946 | 0.980 |
| C297 | 7 | 0.945 | 0.981 |
| C127 | 7 | 0.944 | 0.978 |
| C397 | 7 | 0.943 | 0.976 |
| C513 | 7 | 0.943 | 0.984 |
| C176 | 7 | 0.941 | 0.979 |
| C196 | 7 | 0.940 | 0.972 |
| C37 | 7 | 0.939 | 0.963 |
| C407 | 7 | 0.937 | 0.963 |
HPA cancer prognostics
RNA cancer specificity: Not detected
Human Protein Atlas survival analysis — favorable = higher expression predicts better survival.
1 prognostic cancer types:
| Cancer | Prognostic | p-value |
|---|---|---|
| Glioblastoma Multiforme (validation) | favorable | 2.87e-05 |
Disease associations
OMIM: gene `` | disease phenotypes:
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (CPIC guideline: no)
CTD chemical–gene interactions
14 total (human), top 14 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, decreases expression | 2 |
| methyleugenol | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | affects cotreatment, decreases methylation | 1 |
| fipronil | affects cotreatment, decreases expression | 1 |
| bisphenol S | increases methylation | 1 |
| Fulvestrant | affects cotreatment, decreases methylation | 1 |
| DEET | decreases expression, affects cotreatment | 1 |
| Endosulfan | decreases expression | 1 |
| N-Nitrosopyrrolidine | decreases expression | 1 |
| Smoke | increases expression | 1 |
| Valproic Acid | increases methylation | 1 |
| Aflatoxin B1 | decreases expression | 1 |
| Permethrin | increases expression | 1 |
Clinical trials (associated diseases)
Via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.