SCAT2

Summary

SCAT2 (S-phase cancer associated transcript 2, HGNC:53976) is a long non-coding RNA gene on chromosome 12q13.13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53976
Approved symbol	SCAT2
Name	S-phase cancer associated transcript 2
Location	12q13.13
Locus type	RNA, long non-coding
Status	Approved
Aliases	CBX5-AS1, AC078778.1
Ensembl gene	ENSG00000257596
Ensembl biotype	lncRNA
Entrez	112935960
RNAcentral	URS000028998C — lncRNA, 735 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000547177, ENST00000724024

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000547177 — 2 exons

Exon	Start	End
ENSE00002398949	54262615	54262937
ENSE00002403468	54278652	54279063

Expression profiles

Bgee: expression breadth ubiquitous, 133 present calls, max score 87.72.

Top tissues by expression

133 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.72	gold quality
lower esophagus mucosa	UBERON:0035834	78.61	gold quality
mucosa of transverse colon	UBERON:0004991	76.37	gold quality
colonic epithelium	UBERON:0000397	72.74	gold quality
ventricular zone	UBERON:0003053	72.15	gold quality
bone marrow	UBERON:0002371	72.00	gold quality
spleen	UBERON:0002106	71.28	gold quality
bone marrow cell	CL:0002092	71.03	gold quality
left adrenal gland cortex	UBERON:0035825	71.01	gold quality
metanephros cortex	UBERON:0010533	70.75	gold quality
pituitary gland	UBERON:0000007	70.35	gold quality
adenohypophysis	UBERON:0002196	70.30	gold quality
left adrenal gland	UBERON:0001234	69.83	gold quality
lymph node	UBERON:0000029	69.80	gold quality
left lobe of thyroid gland	UBERON:0001120	69.77	gold quality
thyroid gland	UBERON:0002046	69.49	gold quality
prostate gland	UBERON:0002367	69.30	gold quality
tonsil	UBERON:0002372	68.93	gold quality
adrenal gland	UBERON:0002369	68.78	gold quality
left ovary	UBERON:0002119	68.64	gold quality
right adrenal gland	UBERON:0001233	68.50	gold quality
right lobe of liver	UBERON:0001114	68.19	gold quality
rectum	UBERON:0001052	68.10	gold quality
esophagus mucosa	UBERON:0002469	67.96	gold quality
right adrenal gland cortex	UBERON:0035827	67.78	gold quality
right uterine tube	UBERON:0001302	67.74	gold quality
cortical plate	UBERON:0005343	67.60	gold quality
cortex of kidney	UBERON:0001225	67.37	gold quality
right lobe of thyroid gland	UBERON:0001119	67.31	gold quality
ovary	UBERON:0000992	67.22	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.94

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.