SCG3-AS1

Summary

SCG3-AS1 (SCG3 antisense RNA 1, HGNC:58294) is a long non-coding RNA gene on chromosome 15q21.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58294
Approved symbol	SCG3-AS1
Name	SCG3 antisense RNA 1
Location	15q21.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000259241
Ensembl biotype	lncRNA
Entrez	139432808
RNAcentral	URS00005FCCA4 — lncRNA, 855 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000559918

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000559918 — 2 exons

Exon	Start	End
ENSE00002541792	51695633	51695765
ENSE00002565841	51693216	51693937

Expression profiles

Bgee: expression breadth broad, 75 present calls, max score 94.24.

Top tissues by expression

75 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	94.24	silver quality
skeletal muscle tissue	UBERON:0001134	65.42	silver quality
cortical plate	UBERON:0005343	63.00	gold quality
myometrium	UBERON:0001296	53.21	gold quality
right lobe of liver	UBERON:0001114	52.84	gold quality
monocyte	CL:0000576	52.43	silver quality
islet of Langerhans	UBERON:0000006	50.70	gold quality
blood	UBERON:0000178	50.26	gold quality
cortex of kidney	UBERON:0001225	49.53	silver quality
lymph node	UBERON:0000029	49.27	silver quality
prefrontal cortex	UBERON:0000451	48.72	gold quality
stomach	UBERON:0000945	48.26	gold quality
primary visual cortex	UBERON:0002436	48.17	silver quality
body of uterus	UBERON:0009853	47.99	gold quality
corpus callosum	UBERON:0002336	47.83	silver quality
heart	UBERON:0000948	47.80	gold quality
heart left ventricle	UBERON:0002084	47.62	silver quality
muscle of leg	UBERON:0001383	47.61	gold quality
cerebellar hemisphere	UBERON:0002245	47.29	silver quality
gastrocnemius	UBERON:0001388	47.19	gold quality
kidney	UBERON:0002113	46.55	silver quality
right hemisphere of cerebellum	UBERON:0014890	46.39	silver quality
superior frontal gyrus	UBERON:0002661	45.88	silver quality
right testis	UBERON:0004534	45.67	gold quality
adrenal gland	UBERON:0002369	45.58	gold quality
esophagus mucosa	UBERON:0002469	45.34	gold quality
left adrenal gland	UBERON:0001234	44.93	gold quality
gall bladder	UBERON:0002110	44.69	gold quality
frontal cortex	UBERON:0001870	44.40	gold quality
left testis	UBERON:0004533	43.94	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.