SCG5-AS1

Summary

SCG5-AS1 (SCG5 antisense RNA 1, HGNC:40524) is a long non-coding RNA gene on chromosome 15q13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40524
Approved symbol	SCG5-AS1
Name	SCG5 antisense RNA 1
Location	15q13.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000241818
Ensembl biotype	lncRNA
Entrez	105370757
RNAcentral	URS000051A98E — lncRNA, 461 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000460684, ENST00000486285, ENST00000757716, ENST00000757717

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000460684 — 4 exons

Exon	Start	End
ENSE00001814533	32666439	32666488
ENSE00001853982	32665702	32665917
ENSE00001865032	32672990	32673065
ENSE00001874548	32669000	32669118

Expression profiles

Bgee: expression breadth broad, 97 present calls, max score 91.55.

Top tissues by expression

97 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	91.55	gold quality
corpus callosum	UBERON:0002336	74.88	gold quality
stromal cell of endometrium	CL:0002255	66.04	gold quality
bone marrow cell	CL:0002092	64.64	silver quality
left testis	UBERON:0004533	64.14	gold quality
testis	UBERON:0000473	63.78	gold quality
lower esophagus mucosa	UBERON:0035834	63.17	gold quality
right testis	UBERON:0004534	63.16	gold quality
gall bladder	UBERON:0002110	63.03	gold quality
islet of Langerhans	UBERON:0000006	60.66	gold quality
bone marrow	UBERON:0002371	59.71	gold quality
lymph node	UBERON:0000029	58.53	gold quality
monocyte	CL:0000576	57.40	gold quality
prefrontal cortex	UBERON:0000451	56.25	gold quality
myometrium	UBERON:0001296	55.64	gold quality
vermiform appendix	UBERON:0001154	54.68	gold quality
blood	UBERON:0000178	53.93	gold quality
pituitary gland	UBERON:0000007	53.59	gold quality
calcaneal tendon	UBERON:0003701	52.85	silver quality
cortex of kidney	UBERON:0001225	51.56	silver quality
right coronary artery	UBERON:0001625	51.47	gold quality
adenohypophysis	UBERON:0002196	51.39	gold quality
endometrium	UBERON:0001295	50.53	gold quality
tonsil	UBERON:0002372	50.33	gold quality
kidney	UBERON:0002113	50.10	gold quality
gastrocnemius	UBERON:0001388	50.09	gold quality
adrenal tissue	UBERON:0018303	49.60	gold quality
esophagus mucosa	UBERON:0002469	49.36	gold quality
body of pancreas	UBERON:0001150	48.98	gold quality
multicellular organism	UBERON:0000468	48.86	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.23

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.