SCMH1-DT

Summary

SCMH1-DT (SCMH1 divergent transcript, HGNC:55675) is a long non-coding RNA gene on chromosome 1p34.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55675
Approved symbol	SCMH1-DT
Name	SCMH1 divergent transcript
Location	1p34.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000235358
Ensembl biotype	lncRNA
Entrez	102723924
RNAcentral	URS00026A228A — lncRNA, 638 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 30 — 30 lncRNA

ENST00000422305, ENST00000425554, ENST00000445073, ENST00000657314, ENST00000670398, ENST00000847534, ENST00000847535, ENST00000847536, ENST00000847537, ENST00000847538, ENST00000847539, ENST00000847540, ENST00000847541, ENST00000847542, ENST00000847543, ENST00000847544, ENST00000847545, ENST00000847546, ENST00000847547, ENST00000847548, ENST00000847549, ENST00000847550, ENST00000847551, ENST00000847552, ENST00000847553, ENST00000847554, ENST00000847555, ENST00000847556, ENST00000847557, ENST00000847558

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000422305 — 5 exons

Exon	Start	End
ENSE00001640799	41263841	41264108
ENSE00001766482	41260743	41260873
ENSE00004276359	41264401	41264555
ENSE00004276361	41259979	41260138
ENSE00004276386	41241897	41241976

Expression profiles

Bgee: expression breadth ubiquitous, 123 present calls, max score 92.43.

Top tissues by expression

123 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	92.43	gold quality
testis	UBERON:0000473	91.83	gold quality
right testis	UBERON:0004534	91.66	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	88.36	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.90	silver quality
skeletal muscle tissue	UBERON:0001134	73.02	gold quality
hindlimb stylopod muscle	UBERON:0004252	69.26	gold quality
tonsil	UBERON:0002372	68.86	gold quality
apex of heart	UBERON:0002098	67.91	gold quality
bone marrow	UBERON:0002371	67.48	gold quality
bone marrow cell	CL:0002092	67.33	silver quality
urinary bladder	UBERON:0001255	65.58	gold quality
mucosa of stomach	UBERON:0001199	63.61	gold quality
descending thoracic aorta	UBERON:0002345	60.13	gold quality
adrenal tissue	UBERON:0018303	59.89	gold quality
calcaneal tendon	UBERON:0003701	59.57	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	58.67	gold quality
adenohypophysis	UBERON:0002196	58.65	gold quality
liver	UBERON:0002107	58.63	gold quality
lower esophagus	UBERON:0013473	58.58	gold quality
lower esophagus muscularis layer	UBERON:0035833	58.54	gold quality
pituitary gland	UBERON:0000007	58.41	gold quality
muscle of leg	UBERON:0001383	57.96	gold quality
muscle layer of sigmoid colon	UBERON:0035805	57.94	gold quality
gastrocnemius	UBERON:0001388	57.61	gold quality
prostate gland	UBERON:0002367	57.35	gold quality
right coronary artery	UBERON:0001625	57.31	gold quality
tibial artery	UBERON:0007610	57.18	gold quality
popliteal artery	UBERON:0002250	57.17	gold quality
myometrium	UBERON:0001296	57.15	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.32

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.