SCN1B
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Summary
SCN1B (sodium voltage-gated channel beta subunit 1, HGNC:10586) is a protein-coding gene on chromosome 19q13.11, encoding Sodium channel regulatory subunit beta-1 (Q07699). Regulatory subunit of multiple voltage-gated sodium (Nav) channels directly mediating the depolarization of excitable membranes.
Voltage-gated sodium channels are heteromeric proteins that function in the generation and propagation of action potentials in muscle and neuronal cells. They are composed of one alpha and two beta subunits, where the alpha subunit provides channel activity and the beta-1 subunit modulates the kinetics of channel inactivation. This gene encodes a sodium channel beta-1 subunit. Mutations in this gene result in generalized epilepsy with febrile seizures plus, Brugada syndrome 5, and defects in cardiac conduction. Multiple transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 6324 — RefSeq curated summary.
At a glance
- Gene–disease (curated): generalized epilepsy with febrile seizures plus (Definitive, ClinGen) — +8 more curated relationships
- GWAS associations: 4
- Clinical variants (ClinVar): 702 total — 27 pathogenic, 5 likely-pathogenic
- Phenotypes (HPO): 148
- Druggable target: yes — 2 molecules with ChEMBL bioactivity
- Dosage sensitivity (ClinGen): haploinsufficiency no evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_001037
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:10586 |
| Approved symbol | SCN1B |
| Name | sodium voltage-gated channel beta subunit 1 |
| Location | 19q13.11 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000105711 |
| Ensembl biotype | protein_coding |
| OMIM | 600235 |
| Entrez | 6324 |
Gene structure
Transcript identifiers
Ensembl transcripts: 11 — 8 protein_coding, 2 retained_intron, 1 nonsense_mediated_decay
ENST00000262631, ENST00000415950, ENST00000595652, ENST00000596348, ENST00000602150, ENST00000638536, ENST00000639260, ENST00000640135, ENST00000675741, ENST00000676410, ENST00000955983
RefSeq mRNA: 3 — MANE Select: NM_001037
NM_001037, NM_001321605, NM_199037
CCDS: CCDS12441, CCDS46047, CCDS86744
Canonical transcript exons
ENST00000262631 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000862735 | 35039635 | 35039706 |
| ENSE00000862736 | 35039797 | 35040449 |
| ENSE00001254304 | 35039117 | 35039258 |
| ENSE00003501372 | 35033499 | 35033739 |
| ENSE00003557397 | 35032528 | 35032694 |
| ENSE00003806938 | 35030470 | 35030860 |
Expression profiles
Bgee: expression breadth ubiquitous, 133 present calls, max score 99.43.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 10.9798 / max 458.3845, expressed in 1337 samples.
FANTOM5 promoters (10 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 175184 | 5.3467 | 1073 |
| 175186 | 1.6628 | 595 |
| 175189 | 1.5350 | 436 |
| 175191 | 0.9853 | 217 |
| 175188 | 0.3910 | 163 |
| 175185 | 0.3474 | 139 |
| 175183 | 0.3367 | 177 |
| 175190 | 0.1557 | 53 |
| 175187 | 0.1410 | 68 |
| 175192 | 0.0783 | 32 |
Top tissues by expression
134 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| primary visual cortex | UBERON:0002436 | 99.43 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 99.29 | gold quality |
| cerebellum | UBERON:0002037 | 99.21 | gold quality |
| cerebellar cortex | UBERON:0002129 | 99.21 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 99.21 | gold quality |
| gastrocnemius | UBERON:0001388 | 99.13 | gold quality |
| right frontal lobe | UBERON:0002810 | 98.50 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 98.46 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 98.20 | gold quality |
| muscle of leg | UBERON:0001383 | 98.16 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 98.15 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 97.92 | gold quality |
| frontal cortex | UBERON:0001870 | 97.72 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 97.56 | gold quality |
| prefrontal cortex | UBERON:0000451 | 97.17 | gold quality |
| cerebral cortex | UBERON:0000956 | 96.59 | gold quality |
| putamen | UBERON:0001874 | 96.43 | gold quality |
| right atrium auricular region | UBERON:0006631 | 96.29 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 96.14 | gold quality |
| caudate nucleus | UBERON:0001873 | 95.26 | gold quality |
| Ammon’s horn | UBERON:0001954 | 94.85 | gold quality |
| substantia nigra | UBERON:0002038 | 94.70 | gold quality |
| brain | UBERON:0000955 | 94.69 | gold quality |
| apex of heart | UBERON:0002098 | 94.16 | gold quality |
| nucleus accumbens | UBERON:0001882 | 93.14 | gold quality |
| temporal lobe | UBERON:0001871 | 93.10 | gold quality |
| amygdala | UBERON:0001876 | 93.06 | gold quality |
| muscle tissue | UBERON:0002385 | 92.84 | gold quality |
| heart left ventricle | UBERON:0002084 | 92.61 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 92.56 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 4.33 |
| E-CURD-112 | no | 3.28 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
25 targeting SCN1B, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-MIR-6721-5P | 99.93 | 68.92 | 2981 |
| HSA-MIR-3686 | 99.90 | 70.53 | 2432 |
| HSA-MIR-4447 | 99.85 | 67.81 | 2900 |
| HSA-MIR-765 | 99.84 | 68.24 | 2442 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-7154-5P | 99.69 | 70.52 | 1900 |
| HSA-MIR-486-3P | 99.51 | 66.82 | 1901 |
| HSA-MIR-3182 | 99.40 | 68.15 | 2454 |
| HSA-MIR-4311 | 99.31 | 70.47 | 3041 |
| HSA-MIR-504-3P | 99.30 | 67.18 | 1745 |
| HSA-MIR-606 | 98.72 | 67.34 | 960 |
| HSA-MIR-1227-5P | 98.65 | 65.32 | 1549 |
| HSA-MIR-924 | 97.78 | 66.21 | 681 |
| HSA-MIR-296-5P | 97.61 | 64.02 | 851 |
| HSA-MIR-6787-5P | 97.54 | 63.85 | 457 |
| HSA-MIR-4313 | 97.18 | 63.15 | 420 |
| HSA-MIR-1913 | 97.07 | 66.20 | 1417 |
| HSA-MIR-6773-5P | 97.04 | 64.30 | 595 |
| HSA-MIR-5591-3P | 96.23 | 67.03 | 489 |
| HSA-MIR-6815-5P | 96.05 | 65.55 | 662 |
| HSA-MIR-6865-5P | 96.05 | 65.58 | 675 |
| HSA-MIR-10396B-5P | 94.99 | 63.57 | 358 |
| HSA-MIR-744-5P | 93.78 | 65.29 | 230 |
Functional genomics
ClinGen dosage: haploinsufficiency 0 (no evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- Mutation of the sodium channel subunit SCN1B linked again to generalized epilepsy with febrile seizures (PMID:12011299)
- Functional and biochemical analysis of a sodium channel beta1 subunit mutation responsible for generalized epilepsy with febrile seizures plus type 1. (PMID:12486163)
- the expression of NaCh beta1 subunit protein in astrocytes is plastic, and indicate a novel mechanism for modulation of glial function in gliosis-associated pathologies. (PMID:12677453)
- The IVS2-2A>C transition deletes AA 70-74 in the central hydrophobic core of the extracellular Ig domain, disrupting the hydrophobic interaction in the Ig-like fold & proper [beta]1 folding & causing a persistent inward Na+ current & hyperexcitability. (PMID:14504340)
- identification and characterization of a novel splicing variant; functional studies in oocytes demonstrate that the beta1B subunit increases the ionic current when coexpressed with the tetrodotoxin sensitive channel, NaV1.2 (PMID:14622265)
- Although data suggest that SCN1B activity does not directly influence membrane potential, intracellular Ca(2+) release, or proliferation in normal human pulmonary artery smooth muscle cells, its physiological functions remain unresolved. (PMID:16052353)
- Use of these Na+ channel models in simple neuron models revealed that both mutations(R85C, R85H) cause an increase in excitability but the R85H mutation was more excitable. (PMID:17604911)
- In summary, the mutant beta1 subunits essentially fail to modulate alpha subunits which could increase neuronal excitability and underlie GEFS+ pathogenesis. (PMID:17629415)
- This suggests that mutations in the SCN1B gene is not a prevalent cause of familial cases of FS and epilepsy or GEFS+ in Scandinavia. (PMID:17927801)
- SCN1B mutations were not found to directly cause long QT syndrome. (PMID:18052691)
- In patient with epilepsy were carried the mutation (C121W) of SCN1B. (PMID:18093548)
- Febrile Seizure is not related to the most common mutations of SCN1B in two Tunisian families (PMID:18175077)
- SCN1B may have a role in human arrhythmia susceptibility (PMID:18464934)
- The data of this study suggested that SCN1B p.R125C is an autosomal recessive cause of Dravet syndrome through functional gene inactivation. (PMID:19710327)
- Loss of function mutations in sodium channel beta-subunits were identified in patients with atrial fibrillation and were associated with a distinctive ECG phenotype (PMID:19808477)
- Enhanced tubulin polymerization reduces sarcolemmal Na(v)1.5 expression and I(Na) amplitude in a beta1-subunit-independent fashion and causes I(Na) fast and slow inactivation impairment in a beta1-subunit-dependent way (PMID:19861310)
- The IVS3+ 2996(TTA)8 allele in SCN1B commonly seen in Japanese would not be pathogenic itself but may render male, middle-aged Japanese more susceptible to Brugada syndrome (PMID:20137763)
- SCN1B is the gene responsible in one out of six Tunisian families with febrile seizures (FS) that may contribute susceptibility for the five others. (PMID:21040232)
- This study demonstrated that SCN1B may not be related to the occurrence of benign partial epilepsy in infancy or convulsions with gastroenteritis. (PMID:21882141)
- The results suggested that beta1B p.G257R may contribute to epilepsy through a mechanism that includes intracellular retention resulting in aberrant neuronal pathfinding. (PMID:21994374)
- Mutation analysis of the SCN1B, SCN1A and GABRG2 genes in children affected by Genetic (Generalised) Epilepsy with Febrile Seizures plus was performed (PMID:22011963)
- results suggest that R214Q variation in SCN1Bb is a functional polymorphism that may serve as a modifier of the substrate responsible for Brugada syndrome or SIDS phenotypes (PMID:22155597)
- Our study supports the association of SCN1Bb with BrS. (PMID:22284586)
- A novel seizure-causing mechanism is suggested for NaV1.2beta1 in patients harboring mutant C121W subunit: increased channel excitability at elevated temperature. (PMID:22292491)
- SCN1B mutation is not a common cause of Dravet syndrome. (PMID:23182416)
- sodium channel polymorphisms are associated with epilepsy (PMID:24337656)
- experimental data indicate that sodium channel voltage-gated type I beta subunit (Navbeta1b)/H162P results in reduced sodium channel activity functionally affecting the ventricular action potential. (PMID:24561865)
- Hippocampal networks of a NaV beta1 transgenic mouse model of genetic epilepsy show enhanced excitability. (PMID:24605816)
- data revealed SCN1Bb as a susceptibility gene responsible for LQTS (PMID:24662403)
- High SCN1B expression is associated with increased tumour growth and metastasis in breast cancer. (PMID:24729314)
- Study showed that the human SCN1B C121W epilepsy mutation leads to decreased axon initial segments expression of SCN1B in heterozygous CW mice and a complete lack of SCN1B in homozygous WW mice (PMID:25421039)
- In a nonreferred nationwide Danish cohort of SIDS cases, up to 5/66 (7.5%) of SIDS cases can be explained by genetic variants in the sodium channel complex genes. (PMID:25757662)
- SCN1B gene mutations that reduce sodium channel current may provide a mechanistic link between Atrioventricular nodal reentrant tachycardia and Brugada syndrome and predispose to expression of both phenotypes. (PMID:25998140)
- We also identified an SCN1B T189M variant in 2 probands with lone AF and in 1 of 250 control subjects. (PMID:26129877)
- Contribution of Cardiac Sodium Channel beta-Subunit Variants to Brugada Syndrome. (PMID:26179811)
- we confirm the recessive inheritance of 2 novel SCN1B mutations in 5 children from 3 families with developmental epileptic encephalopathy. The recessive inheritance and early death in these patients is consistent with the Dravet-like phenotype observed in Scn1b(-/-) mice. (PMID:28218389)
- This report provides the first genetic evidence of SCN1B mutation causing the Benign Familial Infantile Epilepsy (BFIE) phenotype. (PMID:28566192)
- Genetic analysis was suggestive of SCN1B gene mutation associated with Dravet syndrome (PMID:28681755)
- results show that the primary defect of E87Q mutation of the beta1 subunit is to compromise the correct voltage gated sodium channel maturation and traffic (PMID:28878239)
- The lack of genotype-phenotype concordance among families, combined with the high frequency of previously reported mutations in the Genome Aggregation Database browser, suggests that SCN1B is not a monogenic cause of BrS or SADS. (PMID:29758173)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | scn1ba | ENSDARG00000060222 |
| danio_rerio | si:ch211-225p5.8 | ENSDARG00000070170 |
| danio_rerio | scn1bb | ENSDARG00000105003 |
| mus_musculus | Scn1b | ENSMUSG00000019194 |
| rattus_norvegicus | Scn1b | ENSRNOG00000021102 |
Paralogs (1): SCN3B (ENSG00000166257)
Protein
Protein identifiers
Sodium channel regulatory subunit beta-1 — Q07699 (reviewed: Q07699)
All UniProt accessions (6): Q07699, A0A1W2PR05, A0A1W2PS68, A0A6Q8PGS1, A0A6Q8PHF7, B4DI92
UniProt curated annotations — full annotation on UniProt →
Function. Regulatory subunit of multiple voltage-gated sodium (Nav) channels directly mediating the depolarization of excitable membranes. Navs, also called VGSCs (voltage-gated sodium channels) or VDSCs (voltage-dependent sodium channels), operate by switching between closed and open conformations depending on the voltage difference across the membrane. In the open conformation they allow Na(+) ions to selectively pass through the pore, along their electrochemical gradient. The influx of Na+ ions provokes membrane depolarization, initiating the propagation of electrical signals throughout cells and tissues. The accessory beta subunits participate in localization and functional modulation of the Nav channels. Modulates the activity of SCN1A/Nav1.1, SCN2A/Nav1.2, SCN3A/Nav1.3, SCN4A/Nav1.4, SCN5A/Nav1.5, SCN8A/Nav1.6, SCN9A/Nav1.7 and SCN10A/Nav1.8. Cell adhesion molecule that plays a critical role in neuronal migration and pathfinding during brain development. Stimulates neurite outgrowth. Has no regulatory function on the SCN2A sodium channel complex.
Subunit / interactions. Voltage-gated sodium (Nav) channel consists of an ion-conducting pore-forming alpha subunit functional on its own that is regulated by one or more beta subunits. Interacts with SCN1A; regulatory subunit of SCN1A/Nav1.1. Interacts with SCN3A; regulatory subunit of SCN3A/Nav1.3. Interacts with SCN4A; regulatory subunit of SCN4A/Nav1.4. Interacts with SCN5A; regulatory subunit of SCN5A/Nav1.5. Interacts with SCN8A; regulatory subunit of SCN8A/Nav1.6. Interacts with SCN9A; regulatory subunit of SCN9A/Nav1.7. Interacts with SCN10A; regulatory subunit of SCN10A/Nav1.8. Interacts with NFASC. Interacts with TMEM65.
Subcellular location. Cell membrane. Perikaryon. Cell projection. Axon Perikaryon. Secreted.
Tissue specificity. The overall expression of isoform 1 and isoform 2 is very similar. Isoform 1 is abundantly expressed in skeletal muscle, heart and brain. Isoform 2 is highly expressed in brain and skeletal muscle and present at a very low level in heart, placenta, lung, liver, kidney and pancreas. In brain, isoform 2 is most abundant in the cerebellum, followed by the cerebral cortex and occipital lobe, while isoform 1 levels are higher in the cortex compared to the cerebellum. Isoform 2 is expressed in many regions of the brain, including cerebellar Purkinje cells, cortex pyramidal neurons and many of the neuronal fibers throughout the brain (at protein level). Also detected in dorsal root ganglion, in fibers of the spinal nerve and in cortical neurons and their processes (at protein level).
Disease relevance. Generalized epilepsy with febrile seizures plus 1 (GEFSP1) [MIM:604233] A rare autosomal dominant, familial condition with incomplete penetrance and large intrafamilial variability. Patients display febrile seizures persisting sometimes beyond the age of 6 years and/or a variety of afebrile seizure types. This disease combines febrile seizures, generalized seizures often precipitated by fever at age 6 years or more, and partial seizures, with a variable degree of severity. The disease is caused by variants affecting the gene represented in this entry. Brugada syndrome 5 (BRGDA5) [MIM:612838] A tachyarrhythmia characterized by right bundle branch block and ST segment elevation on an electrocardiogram (ECG). It can cause the ventricles to beat so fast that the blood is prevented from circulating efficiently in the body. When this situation occurs, the individual will faint and may die in a few minutes if the heart is not reset. The gene represented in this entry may be involved in disease pathogenesis. Atrial fibrillation, familial, 13 (ATFB13) [MIM:615377] A familial form of atrial fibrillation, a common sustained cardiac rhythm disturbance. Atrial fibrillation is characterized by disorganized atrial electrical activity and ineffective atrial contraction promoting blood stasis in the atria and reduces ventricular filling. It can result in palpitations, syncope, thromboembolic stroke, and congestive heart failure. The disease is caused by variants affecting the gene represented in this entry. Developmental and epileptic encephalopathy 52 (DEE52) [MIM:617350] A form of epileptic encephalopathy, a heterogeneous group of severe early-onset epilepsies characterized by refractory seizures, neurodevelopmental impairment, and poor prognosis. Development is normal prior to seizure onset, after which cognitive and motor delays become apparent. DEE52 inheritance is autosomal recessive. The disease is caused by variants affecting the gene represented in this entry.
Miscellaneous. Due to intron 3 retention.
Similarity. Belongs to the sodium channel auxiliary subunit SCN1B (TC 8.A.17) family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q07699-1 | 1, Beta-1 | yes |
| Q07699-2 | 2, Beta-1B, beta1A, beta1B |
RefSeq proteins (3): NP_001028, NP_001308534, NP_950238 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR013106 | Ig_V-set | Domain |
| IPR013783 | Ig-like_fold | Homologous_superfamily |
| IPR027098 | Na_channel_b1/b3 | Family |
| IPR036179 | Ig-like_dom_sf | Homologous_superfamily |
Pfam: PF07686
UniProt features (42 total): strand 13, sequence variant 12, glycosylation site 4, helix 3, disulfide bond 2, topological domain 2, signal peptide 1, chain 1, splice variant 1, transmembrane region 1, turn 1, domain 1
Structure
Experimental structures (PDB)
39 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7W9K | ELECTRON MICROSCOPY | 2.2 |
| 25II | ELECTRON MICROSCOPY | 2.5 |
| 8I5Y | ELECTRON MICROSCOPY | 2.6 |
| 21TQ | ELECTRON MICROSCOPY | 2.7 |
| 7XVE | ELECTRON MICROSCOPY | 2.7 |
| 8I5B | ELECTRON MICROSCOPY | 2.7 |
| 8I5G | ELECTRON MICROSCOPY | 2.7 |
| 8THH | ELECTRON MICROSCOPY | 2.7 |
| 25IH | ELECTRON MICROSCOPY | 2.8 |
| 7XVF | ELECTRON MICROSCOPY | 2.8 |
| 8G1A | ELECTRON MICROSCOPY | 2.8 |
| 8XMM | ELECTRON MICROSCOPY | 2.89 |
| 7W9P | ELECTRON MICROSCOPY | 2.9 |
| 8I5X | ELECTRON MICROSCOPY | 2.9 |
| 8S9B | ELECTRON MICROSCOPY | 2.9 |
| 8THG | ELECTRON MICROSCOPY | 2.9 |
| 9DK5 | ELECTRON MICROSCOPY | 2.9 |
| 21TP | ELECTRON MICROSCOPY | 3 |
| 7W9M | ELECTRON MICROSCOPY | 3 |
| 7W9T | ELECTRON MICROSCOPY | 3 |
| 8J4F | ELECTRON MICROSCOPY | 3 |
| 7XMF | ELECTRON MICROSCOPY | 3.07 |
| 7XMG | ELECTRON MICROSCOPY | 3.09 |
| 25IJ | ELECTRON MICROSCOPY | 3.1 |
| 8FHD | ELECTRON MICROSCOPY | 3.1 |
| 6AGF | ELECTRON MICROSCOPY | 3.2 |
| 6J8G | ELECTRON MICROSCOPY | 3.2 |
| 6J8H | ELECTRON MICROSCOPY | 3.2 |
| 6J8I | ELECTRON MICROSCOPY | 3.2 |
| 6J8J | ELECTRON MICROSCOPY | 3.2 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q07699-F1 | 87.90 | 0.68 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (2): 21–43, 40–121
Glycosylation sites (4): 93, 110, 114, 135
Function
Pathways and Gene Ontology
Reactome pathways
11 pathways
| ID | Pathway |
|---|---|
| R-HSA-445095 | Interaction between L1 and Ankyrins |
| R-HSA-5576892 | Phase 0 - rapid depolarisation |
| R-HSA-9717207 | Sensory perception of sweet, bitter, and umami (glutamate) taste |
| R-HSA-1266738 | Developmental Biology |
| R-HSA-373760 | L1CAM interactions |
| R-HSA-397014 | Muscle contraction |
| R-HSA-422475 | Axon guidance |
| R-HSA-5576891 | Cardiac conduction |
| R-HSA-9675108 | Nervous system development |
| R-HSA-9709957 | Sensory Perception |
| R-HSA-9717189 | Sensory perception of taste |
MSigDB gene sets: 531 (showing top):
GOBP_MEMBRANE_DEPOLARIZATION, MODULE_274, GOBP_CIRCULATORY_SYSTEM_PROCESS, GOBP_POSITIVE_REGULATION_OF_CATION_CHANNEL_ACTIVITY, GOBP_SODIUM_ION_TRANSMEMBRANE_TRANSPORT, GOBP_MEMBRANE_DEPOLARIZATION_DURING_ACTION_POTENTIAL, GOBP_POSITIVE_REGULATION_OF_TRANSPORTER_ACTIVITY, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_UP, DARWICHE_SKIN_TUMOR_PROMOTER_DN, DARWICHE_PAPILLOMA_RISK_LOW_UP, GOBP_NEUROGENESIS, DARWICHE_PAPILLOMA_RISK_HIGH_DN, DARWICHE_SQUAMOUS_CELL_CARCINOMA_DN, TAL1ALPHAE47_01
GO Biological Process (25): cell adhesion (GO:0007155), axon guidance (GO:0007411), positive regulation of sodium ion transport (GO:0010765), positive regulation of neuron projection development (GO:0010976), neuronal action potential propagation (GO:0019227), corticospinal neuron axon guidance (GO:0021966), sodium ion transmembrane transport (GO:0035725), locomotion (GO:0040011), membrane depolarization (GO:0051899), cardiac muscle contraction (GO:0060048), regulation of ventricular cardiac muscle cell membrane repolarization (GO:0060307), regulation of atrial cardiac muscle cell membrane depolarization (GO:0060371), cardiac conduction (GO:0061337), cardiac muscle cell action potential involved in contraction (GO:0086002), membrane depolarization during action potential (GO:0086010), membrane depolarization during cardiac muscle cell action potential (GO:0086012), membrane depolarization during Purkinje myocyte cell action potential (GO:0086047), regulation of heart rate by cardiac conduction (GO:0086091), regulation of sodium ion transmembrane transport (GO:1902305), positive regulation of voltage-gated sodium channel activity (GO:1905152), regulation of sodium ion transport (GO:0002028), monoatomic ion transport (GO:0006811), sodium ion transport (GO:0006814), neuron projection development (GO:0031175), monoatomic ion transmembrane transport (GO:0034220)
GO Molecular Function (4): sodium channel regulator activity (GO:0017080), sodium channel inhibitor activity (GO:0019871), transmembrane transporter binding (GO:0044325), protein binding (GO:0005515)
GO Cellular Component (11): voltage-gated sodium channel complex (GO:0001518), extracellular region (GO:0005576), plasma membrane (GO:0005886), intercalated disc (GO:0014704), T-tubule (GO:0030315), node of Ranvier (GO:0033268), perikaryon (GO:0043204), membrane (GO:0016020), axon (GO:0030424), sodium channel complex (GO:0034706), cell projection (GO:0042995)
Reactome top-level categories
Rollup of top-8 pathways:
| Category | Pathways |
|---|---|
| L1CAM interactions | 1 |
| Cardiac conduction | 1 |
| Sensory perception of taste | 1 |
| Axon guidance | 1 |
| Nervous system development | 1 |
| Muscle contraction | 1 |
| Developmental Biology | 1 |
| Sensory Perception | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 6 |
| regulation of sodium ion transport | 2 |
| sodium ion transport | 2 |
| cardiac muscle cell action potential | 2 |
| sodium channel activity | 2 |
| cellular process | 1 |
| axonogenesis | 1 |
| neuron projection guidance | 1 |
| positive regulation of monoatomic ion transport | 1 |
| regulation of neuron projection development | 1 |
| neuron projection development | 1 |
| positive regulation of cell projection organization | 1 |
| transmission of nerve impulse | 1 |
| nervous system process | 1 |
| action potential propagation | 1 |
| axon guidance | 1 |
| corticospinal tract morphogenesis | 1 |
| monoatomic cation transmembrane transport | 1 |
| biological_process | 1 |
| regulation of membrane potential | 1 |
| striated muscle contraction | 1 |
| heart contraction | 1 |
| regulation of cardiac muscle cell membrane repolarization | 1 |
| ventricular cardiac muscle cell membrane repolarization | 1 |
| regulation of membrane depolarization | 1 |
| regulation of heart contraction | 1 |
| cardiac muscle cell contraction | 1 |
| action potential | 1 |
| membrane depolarization | 1 |
| membrane depolarization during action potential | 1 |
| membrane depolarization during cardiac muscle cell action potential | 1 |
| Purkinje myocyte action potential | 1 |
| regulation of heart rate | 1 |
| cardiac conduction | 1 |
| sodium ion transmembrane transport | 1 |
| regulation of monoatomic cation transmembrane transport | 1 |
| voltage-gated sodium channel activity | 1 |
| regulation of voltage-gated sodium channel activity | 1 |
| positive regulation of sodium ion transmembrane transporter activity | 1 |
| positive regulation of cation channel activity | 1 |
Protein interactions and networks
STRING
1306 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SCN1B | SCN2B | O60939 | 986 |
| SCN1B | SCN1A | P35498 | 980 |
| SCN1B | SCN4B | Q8IWT1 | 973 |
| SCN1B | SCN5A | Q14524 | 967 |
| SCN1B | GABRG2 | P18507 | 943 |
| SCN1B | SCN9A | Q15858 | 935 |
| SCN1B | SCN2A | Q99250 | 930 |
| SCN1B | GPD1L | Q8N335 | 894 |
| SCN1B | SCN3A | Q9NY46 | 889 |
| SCN1B | KCNE3 | Q9Y6H6 | 885 |
| SCN1B | SCN8A | Q9UQD0 | 876 |
| SCN1B | KCND3 | Q9UK17 | 837 |
| SCN1B | HCN4 | Q9Y3Q4 | 826 |
| SCN1B | CACNB2 | Q08289 | 825 |
| SCN1B | SCN4A | P35499 | 795 |
IntAct
6 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SCN1B | GET4 | psi-mi:“MI:0915”(physical association) | 0.400 |
| SCN1B | ADRA1A | psi-mi:“MI:0915”(physical association) | 0.370 |
| SCN1B | C5AR2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| SCN1B | F2RL1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| SCN1B | UBB | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (16): ANK3 (Affinity Capture-Western), CNTN1 (Affinity Capture-Western), SCN1B (Affinity Capture-Western), SCN1B (Affinity Capture-Western), SCN4B (Affinity Capture-Western), SCN1B (Two-hybrid), SCN1B (Two-hybrid), SCN1B (Two-hybrid), TTC1 (Affinity Capture-MS), RNF126 (Affinity Capture-MS), UBB (Affinity Capture-MS), RNF115 (Affinity Capture-MS), DHRS7 (Affinity Capture-MS), AMFR (Affinity Capture-MS), GET4 (Affinity Capture-MS)
ESM2 similar proteins: A3KPA0, A5A6L6, A5D7C3, O60487, O70255, O88792, P01865, P01903, P01904, P01910, P04224, P04228, P14434, P14439, P14778, P15980, P22646, P23150, P53788, P57087, P59822, P97952, Q00954, Q02955, Q07699, Q17QN4, Q1WIM2, Q28740, Q2WGK2, Q30631, Q3TEW6, Q3V3F6, Q4PPC4, Q5EAB0, Q5R804, Q61730, Q62929, Q63621, Q66KX2, Q68FQ2
Diamond homologs: A5A6L6, P53788, P97952, Q00954, Q07699, Q17QN4, Q2KI11, Q4PPC4, Q8BHK2, Q8HXJ7, Q9JK00, Q9NY72, O70255, Q5EAB0, Q6WEB5
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| SCN1B | “form complex” | “Nax cation channel complex, SCN1B-SCN4B variant” | binding |
| SCN1B | “form complex” | “Nax cation channel complex, SCN1B-SCN2B variant” | binding |
Disease & clinical
Clinical variants and AI predictions
ClinVar
702 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 27 |
| Likely pathogenic | 5 |
| Uncertain significance | 369 |
| Likely benign | 164 |
| Benign | 35 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1376394 | NM_001037.5(SCN1B):c.219T>G (p.Tyr73Ter) | Pathogenic |
| 1449534 | NM_001037.5(SCN1B):c.304C>T (p.Gln102Ter) | Pathogenic |
| 190871 | NM_001037.5(SCN1B):c.449-1G>A | Pathogenic |
| 2014378 | NM_001037.5(SCN1B):c.312_315del (p.Ile106fs) | Pathogenic |
| 2031780 | NM_001037.5(SCN1B):c.518G>A (p.Trp173Ter) | Pathogenic |
| 2035464 | NM_001037.5(SCN1B):c.447del (p.Ala150fs) | Pathogenic |
| 2123799 | NM_001037.5(SCN1B):c.448+10del | Pathogenic |
| 2709805 | NM_001037.5(SCN1B):c.178dup (p.Arg60fs) | Pathogenic |
| 2728379 | NM_001037.5(SCN1B):c.59dup (p.Cys21fs) | Pathogenic |
| 2728854 | NM_001037.5(SCN1B):c.105del (p.Phe36fs) | Pathogenic |
| 2762136 | NM_001037.5(SCN1B):c.94_95insC (p.Tyr32fs) | Pathogenic |
| 2891167 | NM_001037.5(SCN1B):c.3G>A (p.Met1Ile) | Pathogenic |
| 3644786 | NM_001037.5(SCN1B):c.20del (p.Ala6_Leu7insTer) | Pathogenic |
| 3672329 | NM_001037.5(SCN1B):c.166G>T (p.Glu56Ter) | Pathogenic |
| 3726861 | NM_001037.5(SCN1B):c.24_25insT (p.Val9fs) | Pathogenic |
| 3730944 | NM_001037.5(SCN1B):c.40+1G>A | Pathogenic |
| 375404 | NM_001037.5(SCN1B):c.308A>T (p.Asp103Val) | Pathogenic |
| 375687 | NM_001037.5(SCN1B):c.316A>T (p.Ile106Phe) | Pathogenic |
| 4720677 | NM_001037.5(SCN1B):c.77C>A (p.Ser26Ter) | Pathogenic |
| 4726829 | NM_001037.5(SCN1B):c.357C>A (p.Tyr119Ter) | Pathogenic |
| 4728335 | NM_001037.5(SCN1B):c.178del (p.Arg60fs) | Pathogenic |
| 4796654 | NM_001037.5(SCN1B):c.40+1G>T | Pathogenic |
| 694617 | NM_001037.5(SCN1B):c.449-2A>G | Pathogenic |
| 694618 | NM_001037.5(SCN1B):c.355T>G (p.Tyr119Asp) | Pathogenic |
| 855779 | NM_001037.5(SCN1B):c.207+1G>A | Pathogenic |
| 9253 | NM_001037.5(SCN1B):c.208-2A>C | Pathogenic |
| 9256 | NM_001037.5(SCN1B):c.448+89G>A | Pathogenic |
| 1677458 | NM_001037.5(SCN1B):c.41-1G>T | Likely pathogenic |
| 2146865 | NM_001037.5(SCN1B):c.449-1G>T | Likely pathogenic |
| 3065198 | NM_001037.5(SCN1B):c.448+349del | Likely pathogenic |
SpliceAI
1090 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:35032526:A:AG | acceptor_gain | 1.0000 |
| 19:35032526:AGT:A | acceptor_gain | 1.0000 |
| 19:35032527:G:GT | acceptor_gain | 1.0000 |
| 19:35032527:GT:G | acceptor_gain | 1.0000 |
| 19:35032527:GTG:G | acceptor_gain | 1.0000 |
| 19:35032527:GTGT:G | acceptor_gain | 1.0000 |
| 19:35032527:GTGTC:G | acceptor_gain | 1.0000 |
| 19:35032674:GGCAC:G | donor_gain | 1.0000 |
| 19:35032682:G:GT | donor_gain | 1.0000 |
| 19:35032690:TCAAG:T | donor_loss | 1.0000 |
| 19:35032694:GG:G | donor_loss | 1.0000 |
| 19:35033486:T:A | acceptor_gain | 1.0000 |
| 19:35033492:C:G | acceptor_gain | 1.0000 |
| 19:35033495:CTAG:C | acceptor_loss | 1.0000 |
| 19:35033496:TA:T | acceptor_loss | 1.0000 |
| 19:35033497:A:AG | acceptor_gain | 1.0000 |
| 19:35033497:AGAT:A | acceptor_loss | 1.0000 |
| 19:35033498:G:GC | acceptor_gain | 1.0000 |
| 19:35033498:GA:G | acceptor_gain | 1.0000 |
| 19:35033498:GAT:G | acceptor_gain | 1.0000 |
| 19:35033498:GATC:G | acceptor_gain | 1.0000 |
| 19:35033498:GATCC:G | acceptor_gain | 1.0000 |
| 19:35033740:G:C | donor_loss | 1.0000 |
| 19:35033741:T:A | donor_loss | 1.0000 |
| 19:35039171:T:TA | acceptor_gain | 1.0000 |
| 19:35039251:GAGAA:G | donor_gain | 1.0000 |
| 19:35039255:ATGC:A | donor_gain | 1.0000 |
| 19:35039256:TGC:T | donor_gain | 1.0000 |
| 19:35039256:TGCG:T | donor_loss | 1.0000 |
| 19:35039257:GC:G | donor_gain | 1.0000 |
AlphaMissense
1434 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 19:35032605:T:A | C40S | 1.000 |
| 19:35032605:T:C | C40R | 1.000 |
| 19:35032606:G:A | C40Y | 1.000 |
| 19:35032606:G:C | C40S | 1.000 |
| 19:35032607:C:G | C40W | 1.000 |
| 19:35032614:T:A | C43S | 1.000 |
| 19:35032615:G:A | C43Y | 1.000 |
| 19:35032615:G:C | C43S | 1.000 |
| 19:35032616:C:G | C43W | 1.000 |
| 19:35032656:T:A | W57R | 1.000 |
| 19:35032656:T:C | W57R | 1.000 |
| 19:35032657:G:C | W57S | 1.000 |
| 19:35032658:G:C | W57C | 1.000 |
| 19:35032658:G:T | W57C | 1.000 |
| 19:35032662:T:C | F59L | 1.000 |
| 19:35032664:C:A | F59L | 1.000 |
| 19:35032664:C:G | F59L | 1.000 |
| 19:35033565:T:A | W92R | 1.000 |
| 19:35033565:T:C | W92R | 1.000 |
| 19:35033567:G:C | W92C | 1.000 |
| 19:35033567:G:T | W92C | 1.000 |
| 19:35033652:T:A | C121S | 1.000 |
| 19:35033652:T:C | C121R | 1.000 |
| 19:35033653:G:C | C121S | 1.000 |
| 19:35033654:C:G | C121W | 1.000 |
| 19:35033665:G:C | R125P | 1.000 |
| 19:35032606:G:T | C40F | 0.999 |
| 19:35032614:T:C | C43R | 0.999 |
| 19:35032615:G:T | C43F | 0.999 |
| 19:35032619:G:C | K44N | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000092363 (19:35036127 G>GT), RS1000117221 (19:35040367 G>A), RS1001222519 (19:35035645 T>C), RS1002043027 (19:35038064 G>A,C,T), RS1002137782 (19:35030952 C>G), RS1002200861 (19:35029966 C>T), RS1002487178 (19:35030697 G>A), RS1003177665 (19:35029137 C>A,T), RS1003567394 (19:35034250 G>A,C), RS1003784441 (19:35039970 C>T), RS1003906744 (19:35030893 G>A,T), RS1004045980 (19:35038790 G>A), RS1004092373 (19:35032236 C>T), RS1004104847 (19:35030677 C>A), RS1005229466 (19:35030109 G>A)
Disease associations
OMIM: gene MIM:600235 | disease phenotypes: MIM:612838, MIM:604233, MIM:615377, MIM:617350, MIM:601144, MIM:308350, MIM:117100, MIM:600131, MIM:608583
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| genetic developmental and epileptic encephalopathy | Definitive | Autosomal recessive |
| generalized epilepsy with febrile seizures plus, type 1 | Definitive | Autosomal dominant |
| developmental and epileptic encephalopathy, 52 | Definitive | Autosomal recessive |
| Brugada syndrome 5 | Moderate | Autosomal dominant |
| Dravet syndrome | Supportive | Autosomal dominant |
| generalized epilepsy with febrile seizures plus | Supportive | Autosomal dominant |
| progressive familial heart block | Supportive | Autosomal dominant |
| atrial fibrillation, familial, 13 | Limited | Unknown |
| Brugada syndrome 1 | Disputed Evidence | Autosomal dominant |
ClinGen Gene-Disease Validity (3)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| generalized epilepsy with febrile seizures plus | Definitive | AD |
| genetic developmental and epileptic encephalopathy | Definitive | AR |
| Brugada syndrome 1 | Disputed | AD |
Mondo (21): Brugada syndrome 5 (MONDO:0013015), Dravet syndrome (MONDO:0100135), generalized epilepsy with febrile seizures plus, type 1 (MONDO:0011416), atrial fibrillation, familial, 13 (MONDO:0014155), developmental and epileptic encephalopathy, 52 (MONDO:0033361), Brugada syndrome 1 (MONDO:0011001), long QT syndrome (MONDO:0002442), ventricular fibrillation (MONDO:0000190), cardiac rhythm disease (MONDO:0007263), cardiomyopathy (MONDO:0004994), developmental and epileptic encephalopathy, 1 (MONDO:0010632), self-limited epilepsy with centrotemporal spikes (MONDO:0007295), Brugada syndrome (MONDO:0015263), undetermined early-onset epileptic encephalopathy (MONDO:0018614), childhood absence epilepsy (MONDO:0010826)
Orphanet (8): Brugada syndrome (Orphanet:130), Hereditary progressive cardiac conduction defect (Orphanet:871), Dravet syndrome (Orphanet:33069), Genetic epilepsy with febrile seizure plus (Orphanet:36387), Rare cardiomyopathy (Orphanet:167848), Self-limited epilepsy with centrotemporal spikes (Orphanet:1945), Non-specific early-onset epileptic encephalopathy (Orphanet:442835), Childhood absence epilepsy (Orphanet:64280)
HPO phenotypes
148 total (30 of 148 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000054 | Micropenis |
| HP:0000070 | Ureterocele |
| HP:0000110 | Renal dysplasia |
| HP:0000175 | Cleft palate |
| HP:0000252 | Microcephaly |
| HP:0000340 | Sloping forehead |
| HP:0000463 | Anteverted nares |
| HP:0000466 | Limited neck range of motion |
| HP:0000486 | Strabismus |
| HP:0000729 | Autistic behavior |
| HP:0000736 | Short attention span |
| HP:0000739 | Anxiety |
| HP:0000752 | Hyperactivity |
| HP:0000826 | Precocious puberty |
| HP:0000980 | Pallor |
| HP:0001249 | Intellectual disability |
| HP:0001250 | Seizure |
| HP:0001251 | Ataxia |
| HP:0001252 | Hypotonia |
| HP:0001254 | Lethargy |
| HP:0001257 | Spasticity |
| HP:0001263 | Global developmental delay |
| HP:0001266 | Choreoathetosis |
| HP:0001272 | Cerebellar atrophy |
| HP:0001279 | Syncope |
| HP:0001290 | Generalized hypotonia |
| HP:0001300 | Parkinsonism |
| HP:0001302 | Pachygyria |
GWAS associations
4 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001699_14 | Serum albumin levels | 2.000000e-13 |
| GCST001699_5 | Serum albumin levels | 4.000000e-18 |
| GCST001699_8 | Serum albumin levels | 3.000000e-15 |
| GCST009391_1239 | Metabolite levels | 6.000000e-06 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0010422 | triacylglycerol 54:4 measurement |
MeSH disease descriptors (7)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D053840 | Brugada Syndrome | C14.280.067.322; C14.280.123.250; C16.320.100 |
| D009202 | Cardiomyopathies | C14.280.238 |
| D008133 | Long QT Syndrome | C14.280.067.565; C14.280.123.625; C16.131.240.400.715; C23.550.073.547 |
| D014693 | Ventricular Fibrillation | C14.280.067.922; C23.550.073.922 |
| C538261 | Atrial fibrillation, familial 1 (supp.) | |
| C565809 | Generalized Epilepsy With Febrile Seizures Plus, Type 1 (supp.) | |
| C565808 | Generalized Epilepsy with Febrile Seizures Plus (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (10): CHEMBL4523668 (PROTEIN COMPLEX), CHEMBL4523669 (PROTEIN COMPLEX), CHEMBL4523670 (PROTEIN COMPLEX), CHEMBL4523671 (PROTEIN COMPLEX), CHEMBL4523672 (PROTEIN COMPLEX), CHEMBL4630760 (PROTEIN COMPLEX), CHEMBL4630762 (PROTEIN COMPLEX), CHEMBL4630763 (PROTEIN COMPLEX), CHEMBL4630765 (PROTEIN COMPLEX), CHEMBL5487 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
2 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 236 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL4633566 | DS-1971 | 2 | 17 |
| CHEMBL2325014 | PF-05089771 | 2 | 219 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
85 potent at pChembl≥5 of 125 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 9.40 | IC50 | 0.4 | nM | CHEMBL3657855 |
| 9.22 | IC50 | 0.6 | nM | CHEMBL5094715 |
| 8.72 | IC50 | 1.9 | nM | CHEMBL2325622 |
| 7.97 | IC50 | 10.6 | nM | CHEMBL3657855 |
| 7.92 | IC50 | 12 | nM | CHEMBL4642571 |
| 7.89 | IC50 | 13 | nM | CHEMBL4580996 |
| 7.89 | IC50 | 13 | nM | PF-05089771 |
| 7.85 | IC50 | 14 | nM | CHEMBL5288162 |
| 7.82 | IC50 | 15 | nM | CHEMBL5286433 |
| 7.77 | IC50 | 17 | nM | CHEMBL4632675 |
| 7.72 | IC50 | 19 | nM | CHEMBL5276801 |
| 7.70 | IC50 | 20 | nM | CHEMBL4468899 |
| 7.70 | IC50 | 20 | nM | CHEMBL4435054 |
| 7.66 | IC50 | 21.7 | nM | DS-1971 |
| 7.62 | IC50 | 24 | nM | CHEMBL4637488 |
| 7.61 | IC50 | 24.5 | nM | DS-1971 |
| 7.55 | IC50 | 28 | nM | CHEMBL4633573 |
| 7.55 | IC50 | 28 | nM | CHEMBL4642940 |
| 7.52 | IC50 | 30 | nM | CHEMBL4444000 |
| 7.52 | IC50 | 30 | nM | CHEMBL4648397 |
| 7.51 | IC50 | 31 | nM | CHEMBL4460028 |
| 7.51 | IC50 | 31 | nM | CHEMBL4639987 |
| 7.50 | IC50 | 32 | nM | CHEMBL5286829 |
| 7.47 | IC50 | 34 | nM | CHEMBL5270366 |
| 7.42 | IC50 | 38 | nM | CHEMBL5280425 |
| 7.40 | IC50 | 40 | nM | CHEMBL4530743 |
| 7.40 | IC50 | 40 | nM | CHEMBL4544968 |
| 7.40 | IC50 | 40 | nM | CHEMBL4471825 |
| 7.40 | IC50 | 40 | nM | CHEMBL5284082 |
| 7.35 | IC50 | 45 | nM | CHEMBL4637909 |
| 7.33 | IC50 | 47 | nM | CHEMBL4466858 |
| 7.30 | IC50 | 50 | nM | CHEMBL4580815 |
| 7.29 | IC50 | 51 | nM | CHEMBL3657855 |
| 7.28 | IC50 | 52 | nM | CHEMBL5286125 |
| 7.24 | IC50 | 58 | nM | CHEMBL5285313 |
| 7.23 | IC50 | 59 | nM | CHEMBL5287784 |
| 7.22 | IC50 | 60 | nM | CHEMBL4466858 |
| 7.22 | IC50 | 60 | nM | CHEMBL4460028 |
| 7.22 | IC50 | 60 | nM | CHEMBL4645788 |
| 7.18 | IC50 | 66 | nM | CHEMBL4435054 |
| 7.16 | IC50 | 70 | nM | CHEMBL4529272 |
| 7.10 | IC50 | 80 | nM | CHEMBL4457973 |
| 7.07 | IC50 | 85 | nM | CHEMBL5267728 |
| 7.06 | IC50 | 87 | nM | CHEMBL5269981 |
| 7.00 | IC50 | 100 | nM | CHEMBL4462046 |
| 6.96 | IC50 | 110 | nM | CHEMBL4445144 |
| 6.95 | IC50 | 113 | nM | CHEMBL4640756 |
| 6.92 | IC50 | 119 | nM | CHEMBL4580996 |
| 6.92 | IC50 | 120 | nM | CHEMBL4558113 |
| 6.90 | IC50 | 125 | nM | CHEMBL4471825 |
PubChem BioAssay actives
85 with measured affinity, of 184 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-(1-adamantylmethoxy)-N-(azetidin-1-ylsulfonyl)-5-cyclopropyl-2-fluorobenzamide | 1948697: Inhibition of human Nav1.7/beta1/2 transfected in HEK293-A cells assessed as inhibition of channel current incubated for 5.5 mins by high-throughput electrophysiology system analysis | ic50 | 0.0004 | uM |
| 5-cyclopropyl-4-[[1-[(1S)-1-(3,5-dichlorophenyl)ethyl]piperidin-4-yl]methoxy]-2-fluoro-N-methylsulfonylbenzamide | 1948697: Inhibition of human Nav1.7/beta1/2 transfected in HEK293-A cells assessed as inhibition of channel current incubated for 5.5 mins by high-throughput electrophysiology system analysis | ic50 | 0.0006 | uM |
| 4-[4-chloro-2-[2-(1-methylazetidin-3-yl)pyrazol-3-yl]phenoxy]-2,5-difluoro-N-(1,2,4-thiadiazol-5-yl)benzenesulfonamide | 1662959: Inhibition of human NaV1.7/beta1/beta2 expressed in HEK293A cells by Ionworks high-throughput electrophysiology method | ic50 | 0.0019 | uM |
| 2,5-difluoro-4-[(1S,2R)-2-(2-methylpyrazol-3-yl)cyclohexyl]oxy-N-(1,2,4-thiadiazol-5-yl)benzenesulfonamide | 1662959: Inhibition of human NaV1.7/beta1/beta2 expressed in HEK293A cells by Ionworks high-throughput electrophysiology method | ic50 | 0.0120 | uM |
| 5-chloro-4-[[(1S)-1-(2,5-difluorophenyl)ethyl]amino]-2-fluoro-N-(1,3-thiazol-4-yl)benzenesulfonamide | 1616312: Inhibition of recombinant human full length Nav1.2 co-expressed with human SCN1B in HEK293 cells measured after 20 mins at -45 mV holding potential by whole cell patch clamp assay | ic50 | 0.0130 | uM |
| 4-[2-(5-amino-1H-pyrazol-4-yl)-4-chlorophenoxy]-5-chloro-2-fluoro-N-(1,3-thiazol-4-yl)benzenesulfonamide | 1662959: Inhibition of human NaV1.7/beta1/beta2 expressed in HEK293A cells by Ionworks high-throughput electrophysiology method | ic50 | 0.0130 | uM |
| 6-fluoro-1-(3-fluorophenyl)-3-methyl-N-methylsulfonylindole-5-carboxamide | 1948697: Inhibition of human Nav1.7/beta1/2 transfected in HEK293-A cells assessed as inhibition of channel current incubated for 5.5 mins by high-throughput electrophysiology system analysis | ic50 | 0.0140 | uM |
| N-cyclopropylsulfonyl-3-methyl-1-[5-(trifluoromethyl)-3-pyridinyl]indole-5-carboxamide | 1948697: Inhibition of human Nav1.7/beta1/2 transfected in HEK293-A cells assessed as inhibition of channel current incubated for 5.5 mins by high-throughput electrophysiology system analysis | ic50 | 0.0150 | uM |
| 2,5-difluoro-4-[(1S,2R)-2-(2-methylpyrazol-3-yl)cyclopentyl]oxy-N-(1,2,4-thiadiazol-5-yl)benzenesulfonamide | 1662959: Inhibition of human NaV1.7/beta1/beta2 expressed in HEK293A cells by Ionworks high-throughput electrophysiology method | ic50 | 0.0170 | uM |
| 6-fluoro-3-methyl-N-methylsulfonyl-1-[3-(trifluoromethyl)phenyl]indole-5-carboxamide | 1948697: Inhibition of human Nav1.7/beta1/2 transfected in HEK293-A cells assessed as inhibition of channel current incubated for 5.5 mins by high-throughput electrophysiology system analysis | ic50 | 0.0190 | uM |
| 2,6-difluoro-4-[[2-fluoro-6-[[methyl(propan-2-yl)amino]methyl]phenyl]methylamino]-N-(1,3-thiazol-4-yl)benzenesulfonamide | 1616304: Inhibition of recombinant human full length Nav1.6 co-expressed with human SCN1B in HEK293 cells measured after 20 mins at -45 mV holding potential by whole cell patch clamp assay | ic50 | 0.0200 | uM |
| 5-chloro-2-fluoro-4-[[(1S)-1-phenylethyl]amino]-N-(1,3-thiazol-2-yl)benzenesulfonamide | 1616304: Inhibition of recombinant human full length Nav1.6 co-expressed with human SCN1B in HEK293 cells measured after 20 mins at -45 mV holding potential by whole cell patch clamp assay | ic50 | 0.0200 | uM |
| 5-chloro-2-fluoro-4-[(1S,2R)-2-(2-methylpyrazol-3-yl)cyclohexyl]oxy-N-pyrimidin-4-ylbenzenesulfonamide | 1662959: Inhibition of human NaV1.7/beta1/beta2 expressed in HEK293A cells by Ionworks high-throughput electrophysiology method | ic50 | 0.0217 | uM |
| 2-fluoro-5-methyl-4-[(1S,2R)-2-(2-methylpyrazol-3-yl)cyclopentyl]oxy-N-pyrimidin-4-ylbenzenesulfonamide | 1662959: Inhibition of human NaV1.7/beta1/beta2 expressed in HEK293A cells by Ionworks high-throughput electrophysiology method | ic50 | 0.0240 | uM |
| 2,5-difluoro-4-[(1S,2R)-2-(2-methylpyrazol-3-yl)cyclopentyl]oxy-N-(1,3-thiazol-2-yl)benzenesulfonamide | 1662959: Inhibition of human NaV1.7/beta1/beta2 expressed in HEK293A cells by Ionworks high-throughput electrophysiology method | ic50 | 0.0280 | uM |
| 2,6-difluoro-4-[(1S,2R)-2-(2-methylpyrazol-3-yl)cycloheptyl]oxy-N-pyrimidin-4-ylbenzenesulfonamide | 1662959: Inhibition of human NaV1.7/beta1/beta2 expressed in HEK293A cells by Ionworks high-throughput electrophysiology method | ic50 | 0.0280 | uM |
| 4-[[2-(azetidin-1-ylmethyl)-6-fluorophenyl]methylamino]-5-chloro-2-fluoro-N-(1,3-thiazol-4-yl)benzenesulfonamide | 1616304: Inhibition of recombinant human full length Nav1.6 co-expressed with human SCN1B in HEK293 cells measured after 20 mins at -45 mV holding potential by whole cell patch clamp assay | ic50 | 0.0300 | uM |
| 2,6-difluoro-4-[(1S,2R)-2-(2-methylpyrazol-3-yl)cyclohexyl]oxy-N-pyrimidin-4-ylbenzenesulfonamide | 1662959: Inhibition of human NaV1.7/beta1/beta2 expressed in HEK293A cells by Ionworks high-throughput electrophysiology method | ic50 | 0.0300 | uM |
| 4-[[2-[(2,2-dimethylazetidin-1-yl)methyl]-6-fluorophenyl]methylamino]-2,6-difluoro-N-(1,3-thiazol-4-yl)benzenesulfonamide | 1616312: Inhibition of recombinant human full length Nav1.2 co-expressed with human SCN1B in HEK293 cells measured after 20 mins at -45 mV holding potential by whole cell patch clamp assay | ic50 | 0.0310 | uM |
| 2-fluoro-5-methyl-4-[(1S,2R)-2-(2-methylpyrazol-3-yl)cyclohexyl]oxy-N-pyrimidin-4-ylbenzenesulfonamide | 1662959: Inhibition of human NaV1.7/beta1/beta2 expressed in HEK293A cells by Ionworks high-throughput electrophysiology method | ic50 | 0.0310 | uM |
| N-cyclopropylsulfonyl-1-(3-fluorophenyl)-3-methylindole-5-carboxamide | 1948697: Inhibition of human Nav1.7/beta1/2 transfected in HEK293-A cells assessed as inhibition of channel current incubated for 5.5 mins by high-throughput electrophysiology system analysis | ic50 | 0.0320 | uM |
| 3-methyl-N-methylsulfonyl-1-[3-(trifluoromethyl)phenyl]indole-5-carboxamide | 1948697: Inhibition of human Nav1.7/beta1/2 transfected in HEK293-A cells assessed as inhibition of channel current incubated for 5.5 mins by high-throughput electrophysiology system analysis | ic50 | 0.0340 | uM |
| 1-(3-fluorophenyl)-3-methyl-N-methylsulfonylindole-5-carboxamide | 1948697: Inhibition of human Nav1.7/beta1/2 transfected in HEK293-A cells assessed as inhibition of channel current incubated for 5.5 mins by high-throughput electrophysiology system analysis | ic50 | 0.0380 | uM |
| 5-chloro-2-fluoro-4-[[(1R)-2-methoxy-1-phenylethyl]amino]-N-(1,3-thiazol-2-yl)benzenesulfonamide | 1616304: Inhibition of recombinant human full length Nav1.6 co-expressed with human SCN1B in HEK293 cells measured after 20 mins at -45 mV holding potential by whole cell patch clamp assay | ic50 | 0.0400 | uM |
| 5-chloro-4-[[(1S)-1-(2,4-difluorophenyl)ethyl]amino]-2-fluoro-N-(1,3-thiazol-2-yl)benzenesulfonamide | 1616304: Inhibition of recombinant human full length Nav1.6 co-expressed with human SCN1B in HEK293 cells measured after 20 mins at -45 mV holding potential by whole cell patch clamp assay | ic50 | 0.0400 | uM |
| 4-[[2-[[tert-butyl(methyl)amino]methyl]-6-fluorophenyl]methylamino]-2,6-difluoro-N-(1,3-thiazol-4-yl)benzenesulfonamide | 1616304: Inhibition of recombinant human full length Nav1.6 co-expressed with human SCN1B in HEK293 cells measured after 20 mins at -45 mV holding potential by whole cell patch clamp assay | ic50 | 0.0400 | uM |
| N-cyclopropylsulfonyl-6-fluoro-3-methyl-1-[5-(trifluoromethyl)-3-pyridinyl]indole-5-carboxamide | 1948697: Inhibition of human Nav1.7/beta1/2 transfected in HEK293-A cells assessed as inhibition of channel current incubated for 5.5 mins by high-throughput electrophysiology system analysis | ic50 | 0.0400 | uM |
| 5-chloro-2-fluoro-4-[(1S,2R)-2-(2-methylpyrazol-3-yl)cyclopentyl]oxy-N-pyrimidin-4-ylbenzenesulfonamide | 1662959: Inhibition of human NaV1.7/beta1/beta2 expressed in HEK293A cells by Ionworks high-throughput electrophysiology method | ic50 | 0.0450 | uM |
| 2,6-difluoro-4-[[(1S)-1-(2-fluorophenyl)ethyl]amino]-N-(1,3-thiazol-4-yl)benzenesulfonamide | 1616312: Inhibition of recombinant human full length Nav1.2 co-expressed with human SCN1B in HEK293 cells measured after 20 mins at -45 mV holding potential by whole cell patch clamp assay | ic50 | 0.0470 | uM |
| 3-chloro-4-(1-phenylpropylamino)-N-(1,3-thiazol-2-yl)benzenesulfonamide | 1616304: Inhibition of recombinant human full length Nav1.6 co-expressed with human SCN1B in HEK293 cells measured after 20 mins at -45 mV holding potential by whole cell patch clamp assay | ic50 | 0.0500 | uM |
| 5-chloro-4-[(5-chloro-6-cyclopropyl-3-pyridinyl)oxy]-2-fluoro-N-methylsulfonylbenzamide | 1948697: Inhibition of human Nav1.7/beta1/2 transfected in HEK293-A cells assessed as inhibition of channel current incubated for 5.5 mins by high-throughput electrophysiology system analysis | ic50 | 0.0520 | uM |
| 3-methyl-1-(3-methylphenyl)-N-methylsulfonylindole-5-carboxamide | 1948697: Inhibition of human Nav1.7/beta1/2 transfected in HEK293-A cells assessed as inhibition of channel current incubated for 5.5 mins by high-throughput electrophysiology system analysis | ic50 | 0.0580 | uM |
| N-cyclopropylsulfonyl-3-methyl-1-[6-(trifluoromethyl)-3-pyridinyl]indole-5-carboxamide | 1948697: Inhibition of human Nav1.7/beta1/2 transfected in HEK293-A cells assessed as inhibition of channel current incubated for 5.5 mins by high-throughput electrophysiology system analysis | ic50 | 0.0590 | uM |
| 2,6-difluoro-4-[(1S,2R)-2-(2-methylpyrazol-3-yl)cyclopentyl]oxy-N-pyrimidin-4-ylbenzenesulfonamide | 1662959: Inhibition of human NaV1.7/beta1/beta2 expressed in HEK293A cells by Ionworks high-throughput electrophysiology method | ic50 | 0.0600 | uM |
| 2,6-difluoro-4-[[(1S)-1-(2-fluoro-5-methoxyphenyl)ethyl]amino]-N-(1,3-thiazol-4-yl)benzenesulfonamide | 1616304: Inhibition of recombinant human full length Nav1.6 co-expressed with human SCN1B in HEK293 cells measured after 20 mins at -45 mV holding potential by whole cell patch clamp assay | ic50 | 0.0700 | uM |
| 5-chloro-2-fluoro-4-[[(1S)-1-pyridin-3-ylethyl]amino]-N-(1,3-thiazol-2-yl)benzenesulfonamide | 1616304: Inhibition of recombinant human full length Nav1.6 co-expressed with human SCN1B in HEK293 cells measured after 20 mins at -45 mV holding potential by whole cell patch clamp assay | ic50 | 0.0800 | uM |
| 1-(5-chloro-3-pyridinyl)-N-cyclopropylsulfonyl-3-methylindole-5-carboxamide | 1948697: Inhibition of human Nav1.7/beta1/2 transfected in HEK293-A cells assessed as inhibition of channel current incubated for 5.5 mins by high-throughput electrophysiology system analysis | ic50 | 0.0850 | uM |
| 1-(3-chlorophenyl)-3-methyl-N-methylsulfonylindole-5-carboxamide | 1948697: Inhibition of human Nav1.7/beta1/2 transfected in HEK293-A cells assessed as inhibition of channel current incubated for 5.5 mins by high-throughput electrophysiology system analysis | ic50 | 0.0870 | uM |
| 3-chloro-4-(1-phenylethylamino)-N-(1,3-thiazol-2-yl)benzenesulfonamide | 1616304: Inhibition of recombinant human full length Nav1.6 co-expressed with human SCN1B in HEK293 cells measured after 20 mins at -45 mV holding potential by whole cell patch clamp assay | ic50 | 0.1000 | uM |
| 5-chloro-2-fluoro-4-[[(1S)-1-(2-fluoro-5-methoxyphenyl)ethyl]amino]-N-(1,3-thiazol-4-yl)benzenesulfonamide | 1616304: Inhibition of recombinant human full length Nav1.6 co-expressed with human SCN1B in HEK293 cells measured after 20 mins at -45 mV holding potential by whole cell patch clamp assay | ic50 | 0.1100 | uM |
| 2,5-difluoro-4-[(1S,2R)-2-(2-methylpyrazol-3-yl)cyclohexyl]oxy-N-pyrimidin-4-ylbenzenesulfonamide | 1662959: Inhibition of human NaV1.7/beta1/beta2 expressed in HEK293A cells by Ionworks high-throughput electrophysiology method | ic50 | 0.1130 | uM |
| 4-[[(1S)-1-[5-(azetidin-1-ylmethyl)-2-fluorophenyl]ethyl]amino]-5-chloro-2-fluoro-N-(1,3-thiazol-4-yl)benzenesulfonamide | 1616304: Inhibition of recombinant human full length Nav1.6 co-expressed with human SCN1B in HEK293 cells measured after 20 mins at -45 mV holding potential by whole cell patch clamp assay | ic50 | 0.1200 | uM |
| 3-chloro-4-[[(1S)-1-phenylethyl]amino]-N-(1,3-thiazol-2-yl)benzenesulfonamide | 1616304: Inhibition of recombinant human full length Nav1.6 co-expressed with human SCN1B in HEK293 cells measured after 20 mins at -45 mV holding potential by whole cell patch clamp assay | ic50 | 0.1300 | uM |
| 4-[[(1S)-1-(5-cyano-2-fluorophenyl)ethyl]amino]-2,6-difluoro-N-(1,3-thiazol-4-yl)benzenesulfonamide | 1616304: Inhibition of recombinant human full length Nav1.6 co-expressed with human SCN1B in HEK293 cells measured after 20 mins at -45 mV holding potential by whole cell patch clamp assay | ic50 | 0.1400 | uM |
| 2,5-difluoro-4-[(1S,2R)-2-(2-methylpyrazol-3-yl)cyclopentyl]oxy-N-pyrimidin-4-ylbenzenesulfonamide | 1662959: Inhibition of human NaV1.7/beta1/beta2 expressed in HEK293A cells by Ionworks high-throughput electrophysiology method | ic50 | 0.1800 | uM |
| 1-(3-methoxyphenyl)-3-methyl-N-methylsulfonylindole-5-carboxamide | 1948697: Inhibition of human Nav1.7/beta1/2 transfected in HEK293-A cells assessed as inhibition of channel current incubated for 5.5 mins by high-throughput electrophysiology system analysis | ic50 | 0.1900 | uM |
| 1-(4-fluorophenyl)-3-methyl-N-methylsulfonylindole-5-carboxamide | 1948697: Inhibition of human Nav1.7/beta1/2 transfected in HEK293-A cells assessed as inhibition of channel current incubated for 5.5 mins by high-throughput electrophysiology system analysis | ic50 | 0.1900 | uM |
| 5-chloro-2-fluoro-4-[[(1S)-1-(4-fluorophenyl)ethyl]amino]-N-(1,3-thiazol-2-yl)benzenesulfonamide | 1616304: Inhibition of recombinant human full length Nav1.6 co-expressed with human SCN1B in HEK293 cells measured after 20 mins at -45 mV holding potential by whole cell patch clamp assay | ic50 | 0.2300 | uM |
| 5-chloro-4-[[2-[(2,2-dimethylazetidin-1-yl)methyl]-6-fluorophenyl]methylamino]-2-fluoro-N-(1,3-thiazol-4-yl)benzenesulfonamide | 1616304: Inhibition of recombinant human full length Nav1.6 co-expressed with human SCN1B in HEK293 cells measured after 20 mins at -45 mV holding potential by whole cell patch clamp assay | ic50 | 0.2300 | uM |
| 1-(4-chlorophenyl)-3-methyl-N-methylsulfonylindole-5-carboxamide | 1948697: Inhibition of human Nav1.7/beta1/2 transfected in HEK293-A cells assessed as inhibition of channel current incubated for 5.5 mins by high-throughput electrophysiology system analysis | ic50 | 0.2600 | uM |
CTD chemical–gene interactions
27 total (human), top 27 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| cobaltous chloride | decreases expression, increases expression | 2 |
| S-(1,2-dichlorovinyl)cysteine | decreases reaction, increases expression, decreases expression | 2 |
| Benzo(a)pyrene | affects methylation | 2 |
| Particulate Matter | decreases expression, increases abundance | 2 |
| tris(2-butoxyethyl) phosphate | affects expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| sodium arsenite | affects methylation | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 2,3,5,6-tetrafluoro-4-methylbenzyl (Z)-(1RS)-cis-3-(2-chloro-3,3,3-trifluoroprop-1-enyl)-2,2-dimethylcyclopropanecarboxylate | increases transport, affects cotreatment, decreases reaction | 1 |
| abrine | decreases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
| Arbutin | increases expression | 1 |
| Aspirin | increases expression | 1 |
| Calcitriol | increases expression, affects cotreatment | 1 |
| Doxorubicin | decreases expression | 1 |
| Lipopolysaccharides | increases expression, decreases reaction | 1 |
| Phenytoin | affects binding, decreases activity, decreases response to substance | 1 |
| Silicon Dioxide | decreases expression | 1 |
| Smoke | decreases expression | 1 |
| Sodium | decreases reaction, increases transport, affects cotreatment | 1 |
| Testosterone | affects cotreatment, increases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Urethane | decreases expression | 1 |
| Cyclosporine | decreases expression | 1 |
| Okadaic Acid | decreases expression | 1 |
| Acrylamide | increases expression | 1 |
ChEMBL screening assays
15 unique, capped per target: 7 binding, 6 admet, 2 toxicity
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4415855 | ADMET | Inhibition of recombinant human full length Nav1.1 co-expressed with human SCN1B in HEK293 cells measured after 20 mins at -45 mV holding potential by whole cell patch clamp assay | Identification of CNS-Penetrant Aryl Sulfonamides as Isoform-Selective NaV1.6 Inhibitors with Efficacy in Mouse Models of Epilepsy. — J Med Chem |
| CHEMBL4415863 | Binding | Inhibition of recombinant human full length Nav1.7 co-expressed with human SCN1B in HEK293 cells measured after 20 mins at -60 mV holding potential by whole cell patch clamp assay | Identification of CNS-Penetrant Aryl Sulfonamides as Isoform-Selective NaV1.6 Inhibitors with Efficacy in Mouse Models of Epilepsy. — J Med Chem |
| CHEMBL5252387 | Toxicity | Inhibition of human Nav1.1/beta1/2 transfected in HEK293-A cells assessed as inhibition of channel current incubated for 5.5 mins by high-throughput electrophysiology system analysis | N-Aryl Indoles as a Novel Class of Potent NaV1.7 Inhibitors. — ACS Med Chem Lett |
Cellosaurus cell lines
7 cell lines: 3 cancer cell line, 3 transformed cell line, 1 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A8HC | BJTTHi001-A-2 | Induced pluripotent stem cell | Male |
| CVCL_B2ES | Abcam HeLa SCN1B KO | Cancer cell line | Female |
| CVCL_D1KK | PrecisION hNav1.8/beta1-HEK | Transformed cell line | Female |
| CVCL_TK15 | HAP1 SCN1B (-) 1 | Cancer cell line | Male |
| CVCL_TK16 | HAP1 SCN1B (-) 2 | Cancer cell line | Male |
| CVCL_WS18 | HEK293 SCN1A/SCN1B/SCN2B | Transformed cell line | Female |
| CVCL_YN15 | HEK-293 hNav1.9 | Transformed cell line | Female |
Clinical trials (associated diseases)
303 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05044819 | PHASE4 | ACTIVE_NOT_RECRUITING | Assessment of Potential for Chronic Liver Injury in Participants Treated With Epidiolex (Cannabidiol) Oral Solution |
| NCT06598449 | PHASE4 | RECRUITING | Assessment of Safety of the Use of Fenfluramine in Children With Dravet Syndrome Under 24 Months of Age |
| NCT06924827 | PHASE4 | NOT_YET_RECRUITING | A Study to Investigate the Transition of Children From ‘Artisanal Cannabidiol (CBD) to Epidiolex |
| NCT07112365 | PHASE4 | NOT_YET_RECRUITING | The FINTEPLA as an Anti-SUDEP Therapy in Dravet Syndrome Project |
| NCT02513940 | PHASE4 | COMPLETED | Influence of Testosterone Administration on Drug-Induced QT Interval Prolongation and Torsades de Pointes |
| NCT03834883 | PHASE4 | COMPLETED | Reducing the Risk of Drug-Induced QT Interval Lengthening in Women |
| NCT04169100 | PHASE4 | UNKNOWN | Novel Form of Acquired Long QT Syndrome |
| NCT04675788 | PHASE4 | COMPLETED | Novel Approaches for Minimizing Drug-Induced QT Interval Lengthening |
| NCT00147277 | PHASE4 | COMPLETED | ADVANCE-D: Antitachycardia Pacing (ATP) Delivery for Painless Implantable Cardioverter Defibrillator (ICD) Therapy |
| NCT00147290 | PHASE4 | COMPLETED | ADVANCE CRT - D: Antitachycardia Pacing (ATP) Delivery for Painless Implantable Cardioverter Defibrillator (ICD) Therapy |
| NCT00180427 | PHASE4 | COMPLETED | VERRARI - Are Ventricular Arrhythmic Episodes Reduced by Rate Response in ICDs? |
| NCT00401466 | PHASE4 | COMPLETED | Remote Follow-up of Patients Receiving Implantable Cardioverter Defibrillator for Prophylactic Therapy |
| NCT00538356 | PHASE4 | COMPLETED | Influence of Home Monitoring on the Clinical Status of Heart Failure Patients With an Impaired Left Ventricular Function |
| NCT00787800 | PHASE4 | COMPLETED | The Use of Dual Chamber ICD With Special Programmed Features to Lower the Risk of Inappropriate Shock |
| NCT03826524 | PHASE4 | RECRUITING | Epinephrine Dose: Optimal Versus Standard Evaluation Trial |
| NCT03855826 | PHASE4 | UNKNOWN | Evaluation of the Efficacy and Safety of Nifekalant Hydrochloride (NIF) Injection. |
| NCT06719141 | PHASE3 | RECRUITING | A Study to Investigate LP352 in Children and Adults With Developmental and Epileptic Encephalopathies (DEE) |
| NCT06908226 | PHASE3 | ENROLLING_BY_INVITATION | A Study to Investigate LP352 in Children and Adults With Developmental and Epileptic Encephalopathy (DEE) |
| NCT00098475 | PHASE3 | ACTIVE_NOT_RECRUITING | Lenalidomide and Dexamethasone With or Without Thalidomide in Treating Patients With Multiple Myeloma |
| NCT00114101 | PHASE3 | ACTIVE_NOT_RECRUITING | Lenalidomide in Treating Patients With Multiple Myeloma Undergoing Autologous Stem Cell Transplant |
| NCT00644228 | PHASE3 | ACTIVE_NOT_RECRUITING | Lenalidomide and Dexamethasone With or Without Bortezomib in Treating Patients With Previously Untreated Multiple Myeloma |
| NCT00869206 | PHASE3 | COMPLETED | Zoledronic Acid in Treating Patients With Metastatic Breast Cancer, Metastatic Prostate Cancer, or Multiple Myeloma With Bone Involvement |
| NCT02091375 | PHASE3 | COMPLETED | Antiepileptic Efficacy Study of GWP42003-P in Children and Young Adults With Dravet Syndrome (GWPCARE1) |
| NCT02174094 | PHASE3 | WITHDRAWN | Clobazam as Adjunctive Therapy in Paediatric Patients Aged ≥1 to ≤16 Years With Dravet Syndrome |
| NCT02187809 | PHASE3 | TERMINATED | Safety and Tolerability of Clobazam as Adjunctive Therapy in Paediatric Patients Aged ≥1 to ≤16 Years With Dravet Syndrome |
| NCT02224573 | PHASE3 | COMPLETED | An Open Label Extension Study of Cannabidiol (GWP42003-P) in Children and Adults With Dravet or Lennox-Gastaut Syndromes |
| NCT02224703 | PHASE3 | COMPLETED | GWPCARE2 A Study to Investigate the Efficacy and Safety of Cannabidiol (GWP42003-P) in Children and Young Adults With Dravet Syndrome |
| NCT02318563 | PHASE3 | WITHDRAWN | Cannabidiol Oral Solution as an Adjunctive Therapy for Treatment of Participants With Inadequately Controlled Dravet Syndrome |
| NCT02682927 | PHASE3 | COMPLETED | A Trial of Two Fixed Doses of ZX008 (Fenfluramine HCl) in Children and Young Adults With Dravet Syndrome |
| NCT02823145 | PHASE3 | COMPLETED | An Open-Label Extension Trial to Assess the Long-Term Safety of ZX008 (Fenfluramine Hydrochloride HCl) Oral Solution in Children and Young Adults With Dravet Syndrome |
| NCT02926898 | PHASE3 | COMPLETED | A 2-Part Study to Investigate the Dose-Ranging Safety and Pharmacokinetics, Followed by the Efficacy and Safety of ZX008 (Fenfluramine Hydrochloride) Oral Solution as an Adjunctive Therapy in Children ≥ 2 Years Old and Young Adults With Dravet Syndrome |
| NCT03299842 | PHASE3 | TERMINATED | A Study to Assess the Usability of the Embrace Seizure Detection Watch in Children and Young Adults With Dravet Syndrome |
| NCT03936777 | PHASE3 | COMPLETED | A Study to Investigate the Long-Term Safety of ZX008 (Fenfluramine Hydrochloride) Oral Solution in Children and Adults With Epileptic Encephalopathy Including Dravet Syndrome and Lennox-Gastaut Syndrome |
| NCT04462770 | PHASE3 | RECRUITING | A Study of EPX-100 (Clemizole Hydrochloride) in Participants With Dravet Syndrome |
| NCT04611438 | PHASE3 | UNKNOWN | Research on Cognitive Effect of Cannabidiol on Dravet Syndrome and Lennox-Gastaut SyndromeGastaut Syndrome |
| NCT04940624 | PHASE3 | COMPLETED | A Study of Soticlestat as an Add-on Therapy in Children and Young Adults With Dravet Syndrome |
| NCT05163314 | PHASE3 | TERMINATED | A Study of Soticlestat as an Add-on Therapy in Children and Adults With Dravet Syndrome or Lennox-Gastaut Syndrome |
| NCT05560282 | PHASE3 | TERMINATED | Fenfluramine for Adult Dravet Patients |
| NCT06118255 | PHASE3 | ACTIVE_NOT_RECRUITING | A Study to Evaluate Safety, Tolerability, and Pharmacokinetics of Fenfluramine (Hydrochloride) in Infants 1 Year to Less Than 2 Years of Age With Dravet Syndrome |
| NCT06422377 | PHASE3 | TERMINATED | A Study Evaluating Soticlestat in Participants With Dravet Syndrome or Lennox-Gastaut Syndrome Who Have Been Exposed to Fenfluramine |
Related Atlas pages
- Associated diseases: Brugada syndrome 1, genetic developmental and epileptic encephalopathy, Brugada syndrome 5, generalized epilepsy with febrile seizures plus, type 1, atrial fibrillation, familial, 13, developmental and epileptic encephalopathy, 52, Dravet syndrome, generalized epilepsy with febrile seizures plus, progressive familial heart block
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): atrial fibrillation, familial, 1, atrial fibrillation, familial, 13, Brugada syndrome, Brugada syndrome 1, Brugada syndrome 5, cardiac rhythm disease, cardiomyopathy, childhood absence epilepsy, conduction system disorder, developmental and epileptic encephalopathy, 1, developmental and epileptic encephalopathy, 52, Dravet syndrome, generalized epilepsy with febrile seizures plus, generalized epilepsy with febrile seizures plus, type 1, genetic developmental and epileptic encephalopathy, long QT syndrome, progressive familial heart block, self-limited epilepsy with centrotemporal spikes, undetermined early-onset epileptic encephalopathy, ventricular fibrillation