SCP2D1-AS1

Summary

SCP2D1-AS1 (SCP2D1 antisense RNA 1, HGNC:16210) is a long non-coding RNA gene on chromosome 20p11.23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:16210
Approved symbol	SCP2D1-AS1
Name	SCP2D1 antisense RNA 1
Location	20p11.23
Locus type	RNA, long non-coding
Status	Approved
Aliases	dJ1068E13.1
Ensembl gene	ENSG00000149443
Ensembl biotype	lncRNA
Entrez	100128496
RNAcentral	URS0000E60A24 — lncRNA, 1033 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000463425, ENST00000623418, ENST00000730019, ENST00000730020, ENST00000730021, ENST00000730022

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000463425 — 2 exons

Exon	Start	End
ENSE00001852787	18811585	18811716
ENSE00003488136	18809728	18810115

Expression profiles

Bgee: expression breadth broad, 69 present calls, max score 94.68.

Top tissues by expression

183 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	94.68	gold quality
left testis	UBERON:0004533	72.32	gold quality
right testis	UBERON:0004534	71.04	gold quality
testis	UBERON:0000473	69.94	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	60.96	gold quality
vena cava	UBERON:0004087	57.24	gold quality
monocyte	CL:0000576	56.74	gold quality
sperm	CL:0000019	56.60	gold quality
stromal cell of endometrium	CL:0002255	54.87	silver quality
apex of heart	UBERON:0002098	53.22	gold quality
endothelial cell	CL:0000115	52.33	gold quality
islet of Langerhans	UBERON:0000006	52.06	gold quality
gastrocnemius	UBERON:0001388	50.07	gold quality
smooth muscle tissue	UBERON:0001135	48.12	gold quality
upper leg skin	UBERON:0004262	47.36	silver quality
pancreas	UBERON:0001264	45.14	gold quality
heart left ventricle	UBERON:0002084	45.14	gold quality
vastus lateralis	UBERON:0001379	44.89	gold quality
quadriceps femoris	UBERON:0001377	44.77	gold quality
popliteal artery	UBERON:0002250	44.76	silver quality
tibial artery	UBERON:0007610	44.75	silver quality
cardiac ventricle	UBERON:0002082	44.29	silver quality
anatomical system	UBERON:0000467	44.27	gold quality
material anatomical entity	UBERON:0000465	44.02	gold quality
multicellular organism	UBERON:0000468	44.00	gold quality
adenohypophysis	UBERON:0002196	43.99	gold quality
endometrium	UBERON:0001295	43.91	gold quality
cortex of kidney	UBERON:0001225	43.85	gold quality
body of pancreas	UBERON:0001150	43.50	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.30

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.